HEADER TRANSFERASE 29-OCT-10 2XW4 OBSLTE 02-FEB-11 2XW4 2Y4L TITLE MANNOSYLGLYCERATE SYNTHASE IN COMPLEX WITH MN-GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSYLGLYCERATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-382; COMPND 5 SYNONYM: MANNOSYL-3-PHOSPHOGLYCERATE SYNTHASE; COMPND 6 EC: 2.4.1.217; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: THE RECOMBINANT PROTEIN IS A 15 RESIDUE C-TERMINAL COMPND 10 TRUNCATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOTHERMUS MARINUS; SOURCE 3 ORGANISM_TAXID: 518766; SOURCE 4 STRAIN: DSM 4252; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TUNER CELLS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS TRANSFERASE, GLYCOSYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.M.NIELSEN,M.D.L.SUITS,M.YANG,C.S.BARRY,C.MARTINEZ-FLEITES, AUTHOR 2 L.E.TAILFORD,J.E.FLINT,B.G.DAVIS,G.J.DAVIES,H.J.GILBERT REVDAT 2 02-FEB-11 2XW4 1 OBSLTE REVDAT 1 17-NOV-10 2XW4 0 JRNL AUTH M.M.NIELSEN,M.D.L.SUITS,M.YANG,C.S.BARRY,C.MARTINEZ-FLEITES, JRNL AUTH 2 L.E.TAILFORD,J.E.FLINT,B.G.DAVIS,G.J.DAVIES,H.J.GILBERT JRNL TITL SUBSTRATE AND METAL-ION PROMISCUITY IN MANNOSYLGLYCERATE JRNL TITL 2 SYNTHASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.797 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.797 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.695 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.35 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.87 REMARK 3 NUMBER OF REFLECTIONS : 49839 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1837 REMARK 3 R VALUE (WORKING SET) : 0.1821 REMARK 3 FREE R VALUE : 0.2138 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 2528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7026 - 7.3240 1.00 2803 143 0.1777 0.1752 REMARK 3 2 7.3240 - 5.8162 1.00 2674 144 0.1601 0.2113 REMARK 3 3 5.8162 - 5.0818 1.00 2666 162 0.1483 0.1838 REMARK 3 4 5.0818 - 4.6175 1.00 2644 146 0.1228 0.1579 REMARK 3 5 4.6175 - 4.2868 1.00 2635 138 0.1263 0.1550 REMARK 3 6 4.2868 - 4.0342 1.00 2626 150 0.1427 0.1738 REMARK 3 7 4.0342 - 3.8322 1.00 2596 149 0.1529 0.1800 REMARK 3 8 3.8322 - 3.6654 1.00 2625 139 0.1685 0.1839 REMARK 3 9 3.6654 - 3.5244 1.00 2633 150 0.1824 0.2356 REMARK 3 10 3.5244 - 3.4028 1.00 2602 132 0.1918 0.2483 REMARK 3 11 3.4028 - 3.2964 1.00 2609 146 0.2103 0.2640 REMARK 3 12 3.2964 - 3.2022 1.00 2623 131 0.2174 0.2689 REMARK 3 13 3.2022 - 3.1179 1.00 2581 145 0.2295 0.2859 REMARK 3 14 3.1179 - 3.0418 1.00 2611 144 0.2481 0.3053 REMARK 3 15 3.0418 - 2.9727 1.00 2615 135 0.2456 0.3153 REMARK 3 16 2.9727 - 2.9095 1.00 2607 124 0.2452 0.3008 REMARK 3 17 2.9095 - 2.8513 1.00 2605 118 0.2480 0.3000 REMARK 3 18 2.8513 - 2.7975 0.98 2556 132 0.2521 0.2692 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.311 REMARK 3 B_SOL : 28.799 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.37 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.75 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.4762 REMARK 3 B22 (A**2) : -2.4762 REMARK 3 B33 (A**2) : 4.9525 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6532 REMARK 3 ANGLE : 1.173 8887 REMARK 3 CHIRALITY : 0.078 940 REMARK 3 PLANARITY : 0.005 1138 REMARK 3 DIHEDRAL : 19.877 2331 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XW4 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-10. REMARK 100 THE PDBE ID CODE IS EBI-42787. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47314 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.80 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.9 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.30 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.7 REMARK 200 R MERGE FOR SHELL (I) : 0.59 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2BO7 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.1 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION CONDITIONS: 4% REMARK 280 V/V ETHYLENE GLYCOL, BIS-TRIS PROPANE, PH 5.5, 0.2 MNCL2, REMARK 280 0.4 SODIUM MALONATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.14000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.57000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.57000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 103.14000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLN 201 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLN 201 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLN 202 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLN 202 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 382 REMARK 465 MET B 1 REMARK 465 ASN B 382 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 109 CG OD1 OD2 REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 LEU A 219 CG CD1 CD2 REMARK 470 GLU A 381 CG CD OE1 OE2 REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 218 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 219 CG CD1 CD2 REMARK 470 TYR B 220 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 381 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 9 -81.91 -116.33 REMARK 500 ASP A 40 -168.39 -127.66 REMARK 500 LEU A 72 -157.55 -91.60 REMARK 500 ILE A 142 -70.13 -107.89 REMARK 500 ASP A 188 -152.78 -95.71 REMARK 500 HIS A 217 -158.27 -151.32 REMARK 500 PHE A 310 -16.03 -152.41 REMARK 500 VAL A 355 -63.65 -135.36 REMARK 500 LYS B 9 -89.98 -127.52 REMARK 500 ASP B 40 -163.91 -110.20 REMARK 500 LEU B 72 -166.55 -102.75 REMARK 500 ASP B 188 -154.69 -98.03 REMARK 500 GLU B 243 172.38 -58.93 REMARK 500 HIS B 257 -173.73 -68.80 REMARK 500 PHE B 310 -12.58 -161.18 REMARK 500 VAL B 355 -57.55 -124.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 ETHYLENE GLYCOL (EDO): ETHYLENE GLYCOL WAS USED TO REMARK 600 CRYOPROTECT THIS PROTEIN CRYSTAL REMARK 600 MALONATE (MLI): MALONATE WAS THE PRECIPITATING AGENT IN THE REMARK 600 RESERVOIR DURING CRYSTALLIZATION REMARK 600 GUANOSINE DIPHOSPHATE (GDP): IS THE PRODUCT OF GDP-MANNOSE REMARK 600 CATALYZED ADDITION TO LACTATE OR GLYCERATE REMARK 600 MANGANESE (MN): MANGANESE IS THE METAL-ION PRESENT IN THE REMARK 600 ACTIVE CENTRE REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 400 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 217 ND1 REMARK 620 2 GDP A 401 O2B 76.3 REMARK 620 3 ASP A 102 OD2 109.3 170.0 REMARK 620 4 GDP A 401 O2A 156.4 93.2 78.4 REMARK 620 5 HOH A2067 O 99.5 92.5 94.6 102.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 400 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP B 401 O2B REMARK 620 2 GDP B 401 O2A 71.1 REMARK 620 3 ASP B 102 OD2 128.4 57.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XW2 RELATED DB: PDB REMARK 900 MANNOSYLGLYCERATE SYNTHASE IN COMPLEX WITH REMARK 900 LACTATE REMARK 900 RELATED ID: 2BO8 RELATED DB: PDB REMARK 900 DISSECTION OF MANNOSYLGLYCERATE SYNTHASE: AN REMARK 900 ARCHETYPAL MANNOSYLTRANSFERASE REMARK 900 RELATED ID: 2BO6 RELATED DB: PDB REMARK 900 DISSECTION OF MANNOSYLGLYCERATE SYNTHASE: AN REMARK 900 ARCHETYPAL MANNOSYLTRANSFERASE REMARK 900 RELATED ID: 2XW3 RELATED DB: PDB REMARK 900 MANNOSYLGLYCERATE SYNTHASE IN COMPLEX WITH MG REMARK 900 -GDP REMARK 900 RELATED ID: 2BO4 RELATED DB: PDB REMARK 900 DISSECTION OF MANNOSYLGLYCERATE SYNTHASE: AN REMARK 900 ARCHETYPAL MANNOSYLTRANSFERASE REMARK 900 RELATED ID: 2BO7 RELATED DB: PDB REMARK 900 DISSECTION OF MANNOSYLGLYCERATE SYNTHASE: AN REMARK 900 ARCHETYPAL MANNOSYLTRANSFERASE REMARK 999 REMARK 999 SEQUENCE REMARK 999 PROTEIN HAS BEEN MUTATED AT POSITION Q201A AND Q202A FOR THE REMARK 999 PURPOSE OF MINIMIZING SURFACE ENTROPY CONTRIBUTION. DBREF 2XW4 A 1 382 UNP Q9RFR0 Q9RFR0_RHOMR 1 382 DBREF 2XW4 B 1 382 UNP Q9RFR0 Q9RFR0_RHOMR 1 382 SEQADV 2XW4 ALA A 201 UNP Q9RFR0 GLN 201 ENGINEERED MUTATION SEQADV 2XW4 ALA A 202 UNP Q9RFR0 GLN 202 ENGINEERED MUTATION SEQADV 2XW4 ALA B 201 UNP Q9RFR0 GLN 201 ENGINEERED MUTATION SEQADV 2XW4 ALA B 202 UNP Q9RFR0 GLN 202 ENGINEERED MUTATION SEQRES 1 A 382 MET SER LEU VAL VAL PHE PRO PHE LYS HIS GLU HIS PRO SEQRES 2 A 382 GLU VAL LEU LEU HIS ASN VAL ARG VAL ALA ALA ALA HIS SEQRES 3 A 382 PRO ARG VAL HIS GLU VAL LEU CYS ILE GLY TYR GLU ARG SEQRES 4 A 382 ASP GLN THR TYR GLU ALA VAL GLU ARG ALA ALA PRO GLU SEQRES 5 A 382 ILE SER ARG ALA THR GLY THR PRO VAL SER VAL ARG LEU SEQRES 6 A 382 GLN GLU ARG LEU GLY THR LEU ARG PRO GLY LYS GLY ASP SEQRES 7 A 382 GLY MET ASN THR ALA LEU ARG TYR PHE LEU GLU GLU THR SEQRES 8 A 382 GLN TRP GLU ARG ILE HIS PHE TYR ASP ALA ASP ILE THR SEQRES 9 A 382 SER PHE GLY PRO ASP TRP ILE THR LYS ALA GLU GLU ALA SEQRES 10 A 382 ALA ASP PHE GLY TYR GLY LEU VAL ARG HIS TYR PHE PRO SEQRES 11 A 382 ARG ALA SER THR ASP ALA MET ILE THR TRP MET ILE THR SEQRES 12 A 382 ARG THR GLY PHE ALA LEU LEU TRP PRO HIS THR GLU LEU SEQRES 13 A 382 SER TRP ILE GLU GLN PRO LEU GLY GLY GLU LEU LEU MET SEQRES 14 A 382 ARG ARG GLU VAL ALA ALA MET LEU TYR GLU ASP GLU ARG SEQRES 15 A 382 VAL ARG ARG ARG SER ASP TRP GLY ILE ASP THR LEU TYR SEQRES 16 A 382 THR PHE VAL THR VAL ALA ALA GLY VAL SER ILE TYR GLU SEQRES 17 A 382 CYS TYR ILE PRO GLU GLY LYS ALA HIS ARG LEU TYR GLY SEQRES 18 A 382 GLY LEU ASP ASP LEU ARG THR MET LEU VAL GLU CYS PHE SEQRES 19 A 382 ALA ALA ILE GLN SER LEU GLN HIS GLU VAL VAL GLY GLN SEQRES 20 A 382 PRO ALA ILE HIS ARG GLN GLU HIS PRO HIS ARG VAL PRO SEQRES 21 A 382 VAL HIS ILE ALA GLU ARG VAL GLY TYR ASP VAL GLU ALA SEQRES 22 A 382 THR LEU HIS ARG LEU MET GLN HIS TRP THR PRO ARG GLN SEQRES 23 A 382 VAL GLU LEU LEU GLU LEU PHE THR THR PRO VAL ARG GLU SEQRES 24 A 382 GLY LEU ARG THR CYS GLN ARG ARG PRO ALA PHE ASN PHE SEQRES 25 A 382 MET ASP GLU MET ALA TRP ALA ALA THR TYR HIS VAL LEU SEQRES 26 A 382 LEU GLU HIS PHE GLN PRO GLY ASP PRO ASP TRP GLU GLU SEQRES 27 A 382 LEU LEU PHE LYS LEU TRP THR THR ARG VAL LEU ASN TYR SEQRES 28 A 382 THR MET THR VAL ALA LEU ARG GLY TYR ASP TYR ALA GLN SEQRES 29 A 382 GLN TYR LEU TYR ARG MET LEU GLY ARG TYR ARG TYR GLN SEQRES 30 A 382 ALA ALA LEU GLU ASN SEQRES 1 B 382 MET SER LEU VAL VAL PHE PRO PHE LYS HIS GLU HIS PRO SEQRES 2 B 382 GLU VAL LEU LEU HIS ASN VAL ARG VAL ALA ALA ALA HIS SEQRES 3 B 382 PRO ARG VAL HIS GLU VAL LEU CYS ILE GLY TYR GLU ARG SEQRES 4 B 382 ASP GLN THR TYR GLU ALA VAL GLU ARG ALA ALA PRO GLU SEQRES 5 B 382 ILE SER ARG ALA THR GLY THR PRO VAL SER VAL ARG LEU SEQRES 6 B 382 GLN GLU ARG LEU GLY THR LEU ARG PRO GLY LYS GLY ASP SEQRES 7 B 382 GLY MET ASN THR ALA LEU ARG TYR PHE LEU GLU GLU THR SEQRES 8 B 382 GLN TRP GLU ARG ILE HIS PHE TYR ASP ALA ASP ILE THR SEQRES 9 B 382 SER PHE GLY PRO ASP TRP ILE THR LYS ALA GLU GLU ALA SEQRES 10 B 382 ALA ASP PHE GLY TYR GLY LEU VAL ARG HIS TYR PHE PRO SEQRES 11 B 382 ARG ALA SER THR ASP ALA MET ILE THR TRP MET ILE THR SEQRES 12 B 382 ARG THR GLY PHE ALA LEU LEU TRP PRO HIS THR GLU LEU SEQRES 13 B 382 SER TRP ILE GLU GLN PRO LEU GLY GLY GLU LEU LEU MET SEQRES 14 B 382 ARG ARG GLU VAL ALA ALA MET LEU TYR GLU ASP GLU ARG SEQRES 15 B 382 VAL ARG ARG ARG SER ASP TRP GLY ILE ASP THR LEU TYR SEQRES 16 B 382 THR PHE VAL THR VAL ALA ALA GLY VAL SER ILE TYR GLU SEQRES 17 B 382 CYS TYR ILE PRO GLU GLY LYS ALA HIS ARG LEU TYR GLY SEQRES 18 B 382 GLY LEU ASP ASP LEU ARG THR MET LEU VAL GLU CYS PHE SEQRES 19 B 382 ALA ALA ILE GLN SER LEU GLN HIS GLU VAL VAL GLY GLN SEQRES 20 B 382 PRO ALA ILE HIS ARG GLN GLU HIS PRO HIS ARG VAL PRO SEQRES 21 B 382 VAL HIS ILE ALA GLU ARG VAL GLY TYR ASP VAL GLU ALA SEQRES 22 B 382 THR LEU HIS ARG LEU MET GLN HIS TRP THR PRO ARG GLN SEQRES 23 B 382 VAL GLU LEU LEU GLU LEU PHE THR THR PRO VAL ARG GLU SEQRES 24 B 382 GLY LEU ARG THR CYS GLN ARG ARG PRO ALA PHE ASN PHE SEQRES 25 B 382 MET ASP GLU MET ALA TRP ALA ALA THR TYR HIS VAL LEU SEQRES 26 B 382 LEU GLU HIS PHE GLN PRO GLY ASP PRO ASP TRP GLU GLU SEQRES 27 B 382 LEU LEU PHE LYS LEU TRP THR THR ARG VAL LEU ASN TYR SEQRES 28 B 382 THR MET THR VAL ALA LEU ARG GLY TYR ASP TYR ALA GLN SEQRES 29 B 382 GLN TYR LEU TYR ARG MET LEU GLY ARG TYR ARG TYR GLN SEQRES 30 B 382 ALA ALA LEU GLU ASN HET MN A 400 1 HET GDP A 401 28 HET MLI A 402 7 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HET MN B 400 1 HET GDP B 401 28 HET MLI B 402 7 HET EDO B 502 4 HET EDO B 503 4 HET EDO B 504 4 HET EDO B 505 4 HET EDO B 506 4 HET EDO B 507 4 HETNAM MN MANGANESE (II) ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MLI MALONATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MN 2(MN 2+) FORMUL 4 GDP 2(C10 H15 N5 O11 P2) FORMUL 5 MLI 2(C3 H2 O4 2-) FORMUL 6 EDO 11(C2 H6 O2) FORMUL 7 HOH *122(H2 O) HELIX 1 1 HIS A 12 HIS A 26 1 15 HELIX 2 2 ASP A 40 GLY A 58 1 19 HELIX 3 3 GLY A 75 THR A 91 1 17 HELIX 4 4 GLY A 107 GLY A 121 1 15 HELIX 5 5 ALA A 136 ILE A 142 1 7 HELIX 6 6 ILE A 142 TRP A 151 1 10 HELIX 7 7 GLU A 155 ILE A 159 5 5 HELIX 8 8 ARG A 171 GLU A 179 1 9 HELIX 9 9 ASP A 180 ARG A 186 1 7 HELIX 10 10 GLY A 190 ALA A 202 1 13 HELIX 11 11 GLY A 222 ASP A 225 5 4 HELIX 12 12 LEU A 226 GLN A 241 1 16 HELIX 13 13 PRO A 260 GLU A 265 1 6 HELIX 14 14 ASP A 270 LEU A 278 1 9 HELIX 15 15 THR A 283 LEU A 290 1 8 HELIX 16 16 GLU A 291 PHE A 293 5 3 HELIX 17 17 THR A 294 CYS A 304 1 11 HELIX 18 18 ASP A 314 PHE A 329 1 16 HELIX 19 19 ASP A 333 VAL A 355 1 23 HELIX 20 20 ALA A 356 ARG A 358 5 3 HELIX 21 21 GLY A 359 ALA A 379 1 21 HELIX 22 22 HIS B 12 HIS B 26 1 15 HELIX 23 23 ASP B 40 GLY B 58 1 19 HELIX 24 24 GLY B 75 THR B 91 1 17 HELIX 25 25 GLY B 107 PHE B 120 1 14 HELIX 26 26 ALA B 136 ILE B 142 1 7 HELIX 27 27 ILE B 142 TRP B 151 1 10 HELIX 28 28 GLU B 155 ILE B 159 5 5 HELIX 29 29 ARG B 171 GLU B 179 1 9 HELIX 30 30 ASP B 180 ARG B 186 1 7 HELIX 31 31 GLY B 190 ALA B 202 1 13 HELIX 32 32 GLY B 222 ASP B 225 5 4 HELIX 33 33 LEU B 226 GLN B 241 1 16 HELIX 34 34 PRO B 260 GLU B 265 1 6 HELIX 35 35 ASP B 270 LEU B 278 1 9 HELIX 36 36 THR B 283 LEU B 290 1 8 HELIX 37 37 GLU B 291 PHE B 293 5 3 HELIX 38 38 THR B 294 CYS B 304 1 11 HELIX 39 39 ASP B 314 PHE B 329 1 16 HELIX 40 40 ASP B 333 VAL B 355 1 23 HELIX 41 41 ALA B 356 ARG B 358 5 3 HELIX 42 42 GLY B 359 GLU B 381 1 23 SHEET 1 AA 8 VAL A 61 LEU A 65 0 SHEET 2 AA 8 GLU A 31 GLY A 36 1 O VAL A 32 N SER A 62 SHEET 3 AA 8 LEU A 3 PHE A 8 1 O VAL A 4 N LEU A 33 SHEET 4 AA 8 ARG A 95 PHE A 98 1 O ARG A 95 N LEU A 3 SHEET 5 AA 8 LEU A 167 ARG A 170 -1 O LEU A 167 N PHE A 98 SHEET 6 AA 8 LEU A 124 TYR A 128 -1 O VAL A 125 N LEU A 168 SHEET 7 AA 8 ILE A 206 TYR A 210 1 O TYR A 207 N ARG A 126 SHEET 8 AA 8 HIS A 251 GLN A 253 1 O ARG A 252 N GLU A 208 SHEET 1 BA 8 VAL B 61 LEU B 65 0 SHEET 2 BA 8 GLU B 31 GLY B 36 1 O VAL B 32 N SER B 62 SHEET 3 BA 8 LEU B 3 PHE B 8 1 O VAL B 4 N LEU B 33 SHEET 4 BA 8 ARG B 95 PHE B 98 1 O ARG B 95 N LEU B 3 SHEET 5 BA 8 LEU B 167 ARG B 170 -1 O LEU B 167 N PHE B 98 SHEET 6 BA 8 LEU B 124 TYR B 128 -1 O VAL B 125 N LEU B 168 SHEET 7 BA 8 ILE B 206 TYR B 210 1 O TYR B 207 N ARG B 126 SHEET 8 BA 8 HIS B 251 GLN B 253 1 O ARG B 252 N GLU B 208 LINK MN MN A 400 ND1 HIS A 217 1555 1555 2.50 LINK MN MN A 400 O2B GDP A 401 1555 1555 2.30 LINK MN MN A 400 OD2 ASP A 102 1555 1555 2.37 LINK MN MN A 400 O2A GDP A 401 1555 1555 2.38 LINK MN MN A 400 O HOH A2067 1555 1555 2.36 LINK MN MN B 400 O2A GDP B 401 1555 1555 2.58 LINK MN MN B 400 OD2 ASP B 102 1555 1555 2.77 LINK MN MN B 400 O2B GDP B 401 1555 1555 2.30 SITE 1 AC1 5 ASP A 102 HIS A 217 GDP A 401 HOH A2066 SITE 2 AC1 5 HOH A2067 SITE 1 AC2 18 PRO A 7 PHE A 8 LYS A 9 GLU A 11 SITE 2 AC2 18 ILE A 35 TYR A 37 GLN A 66 GLY A 75 SITE 3 AC2 18 LYS A 76 ASP A 100 ALA A 101 ASP A 102 SITE 4 AC2 18 TRP A 189 HIS A 217 ARG A 218 TYR A 220 SITE 5 AC2 18 MN A 400 MLI A 402 SITE 1 AC3 8 ARG A 131 ALA A 136 MET A 137 ILE A 138 SITE 2 AC3 8 THR A 139 LEU A 163 TYR A 220 GDP A 401 SITE 1 AC4 3 PHE A 120 TYR A 122 HOH B2017 SITE 1 AC5 5 GLU A 315 ARG A 347 ASN A 350 THR A 354 SITE 2 AC5 5 TYR A 366 SITE 1 AC6 5 PHE A 120 GLY A 121 TYR A 122 ARG A 252 SITE 2 AC6 5 HIS B 153 SITE 1 AC7 7 ARG A 126 PRO A 162 GLY A 164 LEU A 167 SITE 2 AC7 7 ASP A 192 TYR A 195 THR A 196 SITE 1 AC8 4 GLN A 365 ARG A 369 HOH A2068 HIS B 257 SITE 1 AC9 4 ASP B 102 LYS B 215 HIS B 217 GDP B 401 SITE 1 BC1 15 PRO B 7 PHE B 8 LYS B 9 GLU B 11 SITE 2 BC1 15 ILE B 35 TYR B 37 GLN B 66 GLY B 75 SITE 3 BC1 15 LYS B 76 ASP B 100 ALA B 101 ASP B 102 SITE 4 BC1 15 TRP B 189 HIS B 217 MN B 400 SITE 1 BC2 6 ARG B 131 ALA B 136 MET B 137 ILE B 138 SITE 2 BC2 6 THR B 139 HOH B2053 SITE 1 BC3 3 PHE B 120 TYR B 122 HOH B2054 SITE 1 BC4 5 GLU B 315 ARG B 347 ASN B 350 THR B 354 SITE 2 BC4 5 TYR B 366 SITE 1 BC5 5 HIS A 153 PHE B 120 GLY B 121 TYR B 122 SITE 2 BC5 5 ARG B 252 SITE 1 BC6 4 SER B 2 HIS B 30 TRP B 93 GLU B 94 SITE 1 BC7 5 ILE A 250 HIS B 153 VAL B 245 GLY B 246 SITE 2 BC7 5 PRO B 248 SITE 1 BC8 7 ARG B 126 PRO B 162 GLY B 164 LEU B 167 SITE 2 BC8 7 ASP B 192 TYR B 195 THR B 196 CRYST1 149.756 149.756 154.710 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006678 0.003855 0.000000 0.00000 SCALE2 0.000000 0.007711 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006464 0.00000