HEADER HYDROLASE 01-NOV-10 2XWA TITLE CRYSTAL STRUCTURE OF COMPLEMENT FACTOR D MUTANT R202A COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT FACTOR D; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADIPSIN, C3 CONVERTASE ACTIVATOR, PROPERDIN FACTOR D; COMPND 5 EC: 3.4.21.46; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293-E; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PUPE.05.05 KEYWDS IMMUNE SYSTEM, HYDROLASE, SERINE PROTEASE, ALTERNATIVE PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR F.FORNERIS,D.RICKLIN,J.WU,A.TZEKOU,R.S.WALLACE,J.D.LAMBRIS,P.GROS REVDAT 3 20-DEC-23 2XWA 1 REMARK REVDAT 2 11-APR-12 2XWA 1 JRNL REMARK VERSN HETSYN REVDAT 1 12-JAN-11 2XWA 0 JRNL AUTH F.FORNERIS,D.RICKLIN,J.WU,A.TZEKOU,R.S.WALLACE,J.D.LAMBRIS, JRNL AUTH 2 P.GROS JRNL TITL STRUCTURES OF C3B IN COMPLEX WITH FACTORS B AND D GIVE JRNL TITL 2 INSIGHT INTO COMPLEMENT CONVERTASE FORMATION. JRNL REF SCIENCE V. 330 1816 2010 JRNL REFN ISSN 0036-8075 JRNL PMID 21205667 JRNL DOI 10.1126/SCIENCE.1195821 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 9719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 491 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 656 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.4690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3412 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 64 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.15000 REMARK 3 B22 (A**2) : -2.33000 REMARK 3 B33 (A**2) : 4.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.486 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.385 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 42.762 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.897 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.850 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3509 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4783 ; 1.241 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 456 ; 6.271 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;33.870 ;22.789 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 549 ;19.114 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;19.012 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 539 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2683 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2267 ; 0.173 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3626 ; 0.299 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1242 ; 0.329 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1156 ; 0.557 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 11 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 41 1 REMARK 3 1 B 1 B 41 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 300 ; 0.03 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 300 ; 0.03 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 300 ; 0.05 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 300 ; 0.05 ; 0.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 50 A 105 1 REMARK 3 1 B 50 B 105 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 430 ; 0.03 ; 0.05 REMARK 3 TIGHT POSITIONAL 2 B (A): 430 ; 0.03 ; 0.05 REMARK 3 TIGHT THERMAL 2 A (A**2): 430 ; 0.05 ; 0.50 REMARK 3 TIGHT THERMAL 2 B (A**2): 430 ; 0.05 ; 0.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 107 A 155 1 REMARK 3 1 B 107 B 155 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 A (A): 370 ; 0.04 ; 0.05 REMARK 3 TIGHT POSITIONAL 3 B (A): 370 ; 0.04 ; 0.05 REMARK 3 TIGHT THERMAL 3 A (A**2): 370 ; 0.05 ; 0.50 REMARK 3 TIGHT THERMAL 3 B (A**2): 370 ; 0.05 ; 0.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 204 A 228 1 REMARK 3 1 B 204 B 228 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 4 A (A): 193 ; 0.08 ; 0.05 REMARK 3 TIGHT POSITIONAL 4 B (A): 193 ; 0.08 ; 0.05 REMARK 3 TIGHT THERMAL 4 A (A**2): 193 ; 0.06 ; 0.50 REMARK 3 TIGHT THERMAL 4 B (A**2): 193 ; 0.06 ; 0.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 42 A 49 6 REMARK 3 1 B 42 B 49 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 5 A (A): 53 ; 1.12 ; 5.00 REMARK 3 LOOSE POSITIONAL 5 B (A): 53 ; 1.12 ; 5.00 REMARK 3 LOOSE THERMAL 5 A (A**2): 53 ; 0.46 ; 10.00 REMARK 3 LOOSE THERMAL 5 B (A**2): 53 ; 0.46 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 6 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 106 A 106 6 REMARK 3 1 B 106 B 106 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 6 A (A): 11 ; 0.66 ; 5.00 REMARK 3 LOOSE POSITIONAL 6 B (A): 11 ; 0.66 ; 5.00 REMARK 3 LOOSE THERMAL 6 A (A**2): 11 ; 0.80 ; 10.00 REMARK 3 LOOSE THERMAL 6 B (A**2): 11 ; 0.80 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 7 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 198 A 204 6 REMARK 3 1 B 198 B 204 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 7 A (A): 41 ; 0.61 ; 5.00 REMARK 3 LOOSE POSITIONAL 7 B (A): 41 ; 0.61 ; 5.00 REMARK 3 LOOSE THERMAL 7 A (A**2): 41 ; 0.93 ; 10.00 REMARK 3 LOOSE THERMAL 7 B (A**2): 41 ; 0.93 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 8 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 158 A 174 1 REMARK 3 1 B 158 B 174 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 8 A (A): 129 ; 0.03 ; 0.05 REMARK 3 TIGHT POSITIONAL 8 B (A): 129 ; 0.03 ; 0.05 REMARK 3 TIGHT THERMAL 8 A (A**2): 129 ; 0.05 ; 0.50 REMARK 3 TIGHT THERMAL 8 B (A**2): 129 ; 0.05 ; 0.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 9 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 156 A 157 6 REMARK 3 1 B 156 B 157 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 9 A (A): 22 ; 0.85 ; 5.00 REMARK 3 LOOSE POSITIONAL 9 B (A): 22 ; 0.85 ; 5.00 REMARK 3 LOOSE THERMAL 9 A (A**2): 22 ; 0.36 ; 10.00 REMARK 3 LOOSE THERMAL 9 B (A**2): 22 ; 0.36 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 10 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 176 A 197 1 REMARK 3 1 B 176 B 197 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 10 A (A): 144 ; 0.04 ; 0.05 REMARK 3 TIGHT POSITIONAL 10 B (A): 144 ; 0.04 ; 0.05 REMARK 3 TIGHT THERMAL 10 A (A**2): 144 ; 0.07 ; 0.50 REMARK 3 TIGHT THERMAL 10 B (A**2): 144 ; 0.07 ; 0.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 11 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 175 A 175 6 REMARK 3 1 B 175 B 175 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 11 A (A): 11 ; 0.59 ; 5.00 REMARK 3 LOOSE POSITIONAL 11 B (A): 11 ; 0.59 ; 5.00 REMARK 3 LOOSE THERMAL 11 A (A**2): 11 ; 1.50 ; 10.00 REMARK 3 LOOSE THERMAL 11 B (A**2): 11 ; 1.50 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 228 REMARK 3 RESIDUE RANGE : B 1 B 228 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2708 17.1964 33.1011 REMARK 3 T TENSOR REMARK 3 T11: 0.0377 T22: 0.0424 REMARK 3 T33: 0.1892 T12: 0.0252 REMARK 3 T13: 0.0044 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.3667 L22: 1.8040 REMARK 3 L33: 1.7626 L12: 0.2856 REMARK 3 L13: -0.1184 L23: 0.9460 REMARK 3 S TENSOR REMARK 3 S11: 0.0265 S12: 0.0206 S13: 0.1119 REMARK 3 S21: 0.1605 S22: 0.0286 S23: -0.0705 REMARK 3 S31: 0.1160 S32: 0.0352 S33: -0.0551 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2XWA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1290046041. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10248 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 67.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1DSU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.11100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.79400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.74550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.79400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.11100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.74550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 227 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ARG 227 TO ALA REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 45 -18.06 103.26 REMARK 500 ALA A 46 -166.80 89.38 REMARK 500 ASP A 48 5.95 -166.36 REMARK 500 HIS A 58 -56.13 -124.88 REMARK 500 HIS A 159 -105.27 -82.52 REMARK 500 ARG A 175 -35.32 75.75 REMARK 500 CYS A 179 -169.56 -122.62 REMARK 500 THR A 198 -153.31 -87.07 REMARK 500 SER A 201 -100.10 -146.31 REMARK 500 ALA A 202 -34.36 126.08 REMARK 500 LEU B 43 39.13 -83.18 REMARK 500 ALA B 47 94.41 117.48 REMARK 500 ASP B 48 -1.98 57.25 REMARK 500 HIS B 58 -53.62 -123.89 REMARK 500 HIS B 159 -104.97 -83.54 REMARK 500 ARG B 175 -22.21 76.14 REMARK 500 SER B 199 46.18 34.66 REMARK 500 SER B 201 78.71 133.83 REMARK 500 VAL B 203 -7.28 173.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 44 ASP B 45 140.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1230 REMARK 800 REMARK 800 SITE_IDENTIFIER: CAT REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CATALYTIC SITE SHOWS FLIPPED HIS 41 DUE TO SELF REMARK 800 -INHIBITORY LOOP REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DFP RELATED DB: PDB REMARK 900 FACTOR D INHIBITED BY DIISOPROPYL FLUOROPHOSPHATE REMARK 900 RELATED ID: 1DIC RELATED DB: PDB REMARK 900 STRUCTURE OF 3,4-DICHLOROISOCOUMARIN-INHIBITED FACTOR D REMARK 900 RELATED ID: 1DST RELATED DB: PDB REMARK 900 MUTANT OF FACTOR D WITH ENHANCED CATALYTIC ACTIVITY REMARK 900 RELATED ID: 2XW9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COMPLEMENT FACTOR D MUTANT S183A REMARK 900 RELATED ID: 1BIO RELATED DB: PDB REMARK 900 HUMAN COMPLEMENT FACTOR D IN COMPLEX WITH ISATOIC ANHYDRIDE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 2XWB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COMPLEMENT C3B IN COMPLEX WITH FACTORS B AND D REMARK 900 RELATED ID: 1DSU RELATED DB: PDB REMARK 900 HUMAN FACTOR D, COMPLEMENT ACTIVATING ENZYME REMARK 900 RELATED ID: 1HFD RELATED DB: PDB REMARK 900 HUMAN COMPLEMENT FACTOR D IN A P21 CRYSTAL FORM REMARK 900 RELATED ID: 1FDP RELATED DB: PDB REMARK 900 PROENZYME OF HUMAN COMPLEMENT FACTOR D, RECOMBINANT PROFACTOR D REMARK 900 RELATED ID: 2XWJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COMPLEMENT C3B IN COMPLEX WITH FACTOR B REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE NUMBERING IN COORDINATES FOLLOWS THAT OF THE MATURE REMARK 999 PROTEIN. THIS APPLIES TO MUTATION R202A IN THE COORDINATES. DBREF 2XWA A 1 228 UNP P00746 CFAD_HUMAN 26 253 DBREF 2XWA B 1 228 UNP P00746 CFAD_HUMAN 26 253 SEQADV 2XWA ALA A 202 UNP P00746 ARG 227 ENGINEERED MUTATION SEQADV 2XWA ALA B 202 UNP P00746 ARG 227 ENGINEERED MUTATION SEQRES 1 A 228 ILE LEU GLY GLY ARG GLU ALA GLU ALA HIS ALA ARG PRO SEQRES 2 A 228 TYR MET ALA SER VAL GLN LEU ASN GLY ALA HIS LEU CYS SEQRES 3 A 228 GLY GLY VAL LEU VAL ALA GLU GLN TRP VAL LEU SER ALA SEQRES 4 A 228 ALA HIS CYS LEU GLU ASP ALA ALA ASP GLY LYS VAL GLN SEQRES 5 A 228 VAL LEU LEU GLY ALA HIS SER LEU SER GLN PRO GLU PRO SEQRES 6 A 228 SER LYS ARG LEU TYR ASP VAL LEU ARG ALA VAL PRO HIS SEQRES 7 A 228 PRO ASP SER GLN PRO ASP THR ILE ASP HIS ASP LEU LEU SEQRES 8 A 228 LEU LEU GLN LEU SER GLU LYS ALA THR LEU GLY PRO ALA SEQRES 9 A 228 VAL ARG PRO LEU PRO TRP GLN ARG VAL ASP ARG ASP VAL SEQRES 10 A 228 ALA PRO GLY THR LEU CYS ASP VAL ALA GLY TRP GLY ILE SEQRES 11 A 228 VAL ASN HIS ALA GLY ARG ARG PRO ASP SER LEU GLN HIS SEQRES 12 A 228 VAL LEU LEU PRO VAL LEU ASP ARG ALA THR CYS ASN ARG SEQRES 13 A 228 ARG THR HIS HIS ASP GLY ALA ILE THR GLU ARG LEU MET SEQRES 14 A 228 CYS ALA GLU SER ASN ARG ARG ASP SER CYS LYS GLY ASP SEQRES 15 A 228 SER GLY GLY PRO LEU VAL CYS GLY GLY VAL LEU GLU GLY SEQRES 16 A 228 VAL VAL THR SER GLY SER ALA VAL CYS GLY ASN ARG LYS SEQRES 17 A 228 LYS PRO GLY ILE TYR THR ARG VAL ALA SER TYR ALA ALA SEQRES 18 A 228 TRP ILE ASP SER VAL LEU ALA SEQRES 1 B 228 ILE LEU GLY GLY ARG GLU ALA GLU ALA HIS ALA ARG PRO SEQRES 2 B 228 TYR MET ALA SER VAL GLN LEU ASN GLY ALA HIS LEU CYS SEQRES 3 B 228 GLY GLY VAL LEU VAL ALA GLU GLN TRP VAL LEU SER ALA SEQRES 4 B 228 ALA HIS CYS LEU GLU ASP ALA ALA ASP GLY LYS VAL GLN SEQRES 5 B 228 VAL LEU LEU GLY ALA HIS SER LEU SER GLN PRO GLU PRO SEQRES 6 B 228 SER LYS ARG LEU TYR ASP VAL LEU ARG ALA VAL PRO HIS SEQRES 7 B 228 PRO ASP SER GLN PRO ASP THR ILE ASP HIS ASP LEU LEU SEQRES 8 B 228 LEU LEU GLN LEU SER GLU LYS ALA THR LEU GLY PRO ALA SEQRES 9 B 228 VAL ARG PRO LEU PRO TRP GLN ARG VAL ASP ARG ASP VAL SEQRES 10 B 228 ALA PRO GLY THR LEU CYS ASP VAL ALA GLY TRP GLY ILE SEQRES 11 B 228 VAL ASN HIS ALA GLY ARG ARG PRO ASP SER LEU GLN HIS SEQRES 12 B 228 VAL LEU LEU PRO VAL LEU ASP ARG ALA THR CYS ASN ARG SEQRES 13 B 228 ARG THR HIS HIS ASP GLY ALA ILE THR GLU ARG LEU MET SEQRES 14 B 228 CYS ALA GLU SER ASN ARG ARG ASP SER CYS LYS GLY ASP SEQRES 15 B 228 SER GLY GLY PRO LEU VAL CYS GLY GLY VAL LEU GLU GLY SEQRES 16 B 228 VAL VAL THR SER GLY SER ALA VAL CYS GLY ASN ARG LYS SEQRES 17 B 228 LYS PRO GLY ILE TYR THR ARG VAL ALA SER TYR ALA ALA SEQRES 18 B 228 TRP ILE ASP SER VAL LEU ALA HET GOL A1230 6 HET GOL B1230 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *64(H2 O) HELIX 1 1 ALA A 39 LEU A 43 5 5 HELIX 2 2 ASP A 150 ASN A 155 1 6 HELIX 3 3 TYR A 219 ALA A 228 1 10 HELIX 4 4 ALA B 39 LEU B 43 5 5 HELIX 5 5 ASP B 150 ASN B 155 1 6 HELIX 6 6 TYR B 219 ALA B 228 1 10 SHEET 1 AA 8 ARG A 5 GLU A 6 0 SHEET 2 AA 8 GLN A 142 LEU A 149 -1 O HIS A 143 N ARG A 5 SHEET 3 AA 8 LEU A 168 ALA A 171 -1 O CYS A 170 N LEU A 149 SHEET 4 AA 8 GLY A 211 ARG A 215 -1 O GLY A 211 N ALA A 171 SHEET 5 AA 8 VAL A 192 VAL A 197 -1 O VAL A 196 N THR A 214 SHEET 6 AA 8 PRO A 186 CYS A 189 -1 O LEU A 187 N GLY A 195 SHEET 7 AA 8 LEU A 122 GLY A 127 -1 O ASP A 124 N VAL A 188 SHEET 8 AA 8 ARG A 5 GLU A 6 0 SHEET 1 AB 7 MET A 15 LEU A 20 0 SHEET 2 AB 7 ALA A 23 ALA A 32 -1 O ALA A 23 N LEU A 20 SHEET 3 AB 7 TRP A 35 SER A 38 -1 O TRP A 35 N VAL A 31 SHEET 4 AB 7 LEU A 91 LEU A 95 -1 O LEU A 91 N SER A 38 SHEET 5 AB 7 ARG A 68 PRO A 77 -1 N LEU A 73 O GLN A 94 SHEET 6 AB 7 VAL A 51 LEU A 55 -1 O VAL A 51 N VAL A 72 SHEET 7 AB 7 MET A 15 LEU A 20 -1 O SER A 17 N LEU A 54 SHEET 1 BA 8 ARG B 5 GLU B 6 0 SHEET 2 BA 8 GLN B 142 LEU B 149 -1 O HIS B 143 N ARG B 5 SHEET 3 BA 8 LEU B 168 ALA B 171 -1 O CYS B 170 N LEU B 149 SHEET 4 BA 8 GLY B 211 ARG B 215 -1 O GLY B 211 N ALA B 171 SHEET 5 BA 8 VAL B 192 VAL B 197 -1 O VAL B 196 N THR B 214 SHEET 6 BA 8 PRO B 186 CYS B 189 -1 O LEU B 187 N GLY B 195 SHEET 7 BA 8 LEU B 122 GLY B 127 -1 O ASP B 124 N VAL B 188 SHEET 8 BA 8 ARG B 5 GLU B 6 0 SHEET 1 BB 7 MET B 15 LEU B 20 0 SHEET 2 BB 7 ALA B 23 ALA B 32 -1 O ALA B 23 N LEU B 20 SHEET 3 BB 7 TRP B 35 SER B 38 -1 O TRP B 35 N VAL B 31 SHEET 4 BB 7 LEU B 91 LEU B 95 -1 O LEU B 91 N SER B 38 SHEET 5 BB 7 ARG B 68 PRO B 77 -1 N LEU B 73 O GLN B 94 SHEET 6 BB 7 VAL B 51 LEU B 55 -1 O VAL B 51 N VAL B 72 SHEET 7 BB 7 MET B 15 LEU B 20 -1 O SER B 17 N LEU B 54 SSBOND 1 CYS A 26 CYS A 42 1555 1555 2.01 SSBOND 2 CYS A 123 CYS A 189 1555 1555 2.01 SSBOND 3 CYS A 154 CYS A 170 1555 1555 2.02 SSBOND 4 CYS A 179 CYS A 204 1555 1555 2.06 SSBOND 5 CYS B 26 CYS B 42 1555 1555 2.05 SSBOND 6 CYS B 123 CYS B 189 1555 1555 2.04 SSBOND 7 CYS B 154 CYS B 170 1555 1555 2.03 SSBOND 8 CYS B 179 CYS B 204 1555 1555 2.03 CISPEP 1 ASP A 48 GLY A 49 0 -2.19 CISPEP 2 GLY A 200 SER A 201 0 3.60 CISPEP 3 ALA B 47 ASP B 48 0 -4.48 CISPEP 4 GLY B 200 SER B 201 0 2.88 CISPEP 5 CYS B 204 GLY B 205 0 -21.30 SITE 1 AC1 6 VAL A 117 VAL A 148 LEU A 149 ARG A 151 SITE 2 AC1 6 MET A 169 CYS A 170 SITE 1 AC2 7 ASP B 116 VAL B 117 PRO B 119 VAL B 148 SITE 2 AC2 7 LEU B 149 MET B 169 CYS B 170 SITE 1 CAT 3 HIS A 41 ASP A 89 SER A 199 CRYST1 44.222 67.491 133.588 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022613 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007486 0.00000