HEADER LYASE 04-NOV-10 2XWQ TITLE ANAEROBIC COBALT CHELATASE FROM ARCHEAOGLOBUS FULGIDUS (CBIX) IN TITLE 2 COMPLEX WITH METALATED SIROHYDROCHLORIN PRODUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIROHYDROCHLORIN COBALTOCHELATASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: CBIXS; COMPND 5 EC: 4.99.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 STAR DE3; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET3A KEYWDS LYASE, BETA-ALPHA-BETA, COBALAMIN BIOSYNTHESIS, METAL-BINDING, KEYWDS 2 PARALLEL BETA SHEET EXPDTA X-RAY DIFFRACTION AUTHOR D.LADAKIS,A.A.BRINDLEY,E.DEERY,M.J.WARREN,R.W.PICKERSGILL REVDAT 4 20-DEC-23 2XWQ 1 REMARK REVDAT 3 26-JAN-11 2XWQ 1 JRNL REVDAT 2 29-DEC-10 2XWQ 1 JRNL REVDAT 1 22-DEC-10 2XWQ 0 JRNL AUTH C.V.ROMAO,D.LADAKIS,S.A.LOBO,M.A.CARRONDO,A.A.BRINDLEY, JRNL AUTH 2 E.DEERY,P.M.MATIAS,R.W.PICKERSGILL,L.M.SARAIVA,M.J.WARREN JRNL TITL EVOLUTION IN A FAMILY OF CHELATASES FACILITATED BY THE JRNL TITL 2 INTRODUCTION OF ACTIVE SITE ASYMMETRY AND PROTEIN JRNL TITL 3 OLIGOMERIZATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 97 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21173279 JRNL DOI 10.1073/PNAS.1014298108 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1847 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2582 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.3950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4040 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.980 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4404 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5990 ; 2.384 ; 2.049 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 498 ; 7.726 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 204 ;35.970 ;22.157 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 744 ;20.410 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;21.898 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 604 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3452 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2480 ; 1.170 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4002 ; 2.011 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1924 ; 3.104 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1988 ; 4.832 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 2XWQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1290045863. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0079 REMARK 200 MONOCHROMATOR : SILICON MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 253190 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2DJ5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.50500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.33000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.33000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.50500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 126 REMARK 465 ASP A 127 REMARK 465 GLY A 128 REMARK 465 LYS A 129 REMARK 465 GLY A 130 REMARK 465 GLU A 131 REMARK 465 GLU A 132 REMARK 465 GLY B 0 REMARK 465 ARG B 126 REMARK 465 ASP B 127 REMARK 465 GLY B 128 REMARK 465 LYS B 129 REMARK 465 GLY B 130 REMARK 465 GLU B 131 REMARK 465 GLU B 132 REMARK 465 ARG C 126 REMARK 465 ASP C 127 REMARK 465 GLY C 128 REMARK 465 LYS C 129 REMARK 465 GLY C 130 REMARK 465 GLU C 131 REMARK 465 GLU C 132 REMARK 465 GLY D 0 REMARK 465 ARG D 126 REMARK 465 ASP D 127 REMARK 465 GLY D 128 REMARK 465 LYS D 129 REMARK 465 GLY D 130 REMARK 465 GLU D 131 REMARK 465 GLU D 132 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG B 18 O HOH B 2008 1.88 REMARK 500 NZ LYS B 26 OE2 GLU B 30 2.07 REMARK 500 NH2 ARG D 46 O1B SIR D 1126 2.07 REMARK 500 NH1 ARG B 3 O GLY D 32 2.10 REMARK 500 NH1 ARG B 18 O HOH B 2009 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 80 C - N - CA ANGL. DEV. = -9.4 DEGREES REMARK 500 ARG B 46 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 42 44.98 -142.04 REMARK 500 LYS A 45 16.04 56.36 REMARK 500 ASN A 58 65.94 -106.28 REMARK 500 GLU A 97 53.11 34.22 REMARK 500 ASN B 58 68.26 -103.26 REMARK 500 GLU B 77 -59.22 -123.41 REMARK 500 GLU B 97 55.49 37.27 REMARK 500 HIS C 10 -75.22 -79.96 REMARK 500 ALA C 42 62.05 -115.46 REMARK 500 ARG C 44 -128.32 46.51 REMARK 500 GLU C 77 -69.40 -122.90 REMARK 500 GLU C 93 53.28 -97.79 REMARK 500 SER D 12 -55.02 -149.23 REMARK 500 GLN D 13 -37.55 98.09 REMARK 500 ALA D 43 -114.13 43.09 REMARK 500 ARG D 44 -70.29 -19.62 REMARK 500 LYS D 45 22.23 155.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS C 10 GLY C 11 -140.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2002 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A2003 DISTANCE = 6.22 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 COBALT-SIROHYDROCHLORIN (SIR): METAL AT THE CENTER OF THE REMARK 600 SHC IS UNKNOWN, COBALT WAS USED FOR THE PURPOSE OF REMARK 600 MODELLING. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SIR B 1126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SIR D 1126 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XWS RELATED DB: PDB REMARK 900 ANAEROBIC COBALT CHELATASE (CBIX) FROM SALMONELLA TYPHIMURIUM REMARK 900 RELATED ID: 2DJ5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE VITAMIN B12 BIOSYNTHETICCOBALTOCHELATASE, REMARK 900 CBIXS, FROM ARCHAEOGLOBUS FULGIDUS REMARK 900 RELATED ID: 1TJN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN AF0721 FROMARCHAEOGLOBUS REMARK 900 FULGIDUS REMARK 900 RELATED ID: 2XWP RELATED DB: PDB REMARK 900 ANAEROBIC COBALT CHELATASE (CBIK) FROM SALMONELLA TYPHIMURIUM IN REMARK 900 COMPLEX WITH METALATED TETRAPYRROLE DBREF 2XWQ A 1 132 UNP O29537 CBIX_ARCFU 1 132 DBREF 2XWQ B 1 132 UNP O29537 CBIX_ARCFU 1 132 DBREF 2XWQ C 1 132 UNP O29537 CBIX_ARCFU 1 132 DBREF 2XWQ D 1 132 UNP O29537 CBIX_ARCFU 1 132 SEQADV 2XWQ GLY A 0 UNP O29537 EXPRESSION TAG SEQADV 2XWQ GLY B 0 UNP O29537 EXPRESSION TAG SEQADV 2XWQ GLY C 0 UNP O29537 EXPRESSION TAG SEQADV 2XWQ GLY D 0 UNP O29537 EXPRESSION TAG SEQRES 1 A 133 GLY MET ARG ARG GLY LEU VAL ILE VAL GLY HIS GLY SER SEQRES 2 A 133 GLN LEU ASN HIS TYR ARG GLU VAL MET GLU LEU HIS ARG SEQRES 3 A 133 LYS ARG ILE GLU GLU SER GLY ALA PHE ASP GLU VAL LYS SEQRES 4 A 133 ILE ALA PHE ALA ALA ARG LYS ARG ARG PRO MET PRO ASP SEQRES 5 A 133 GLU ALA ILE ARG GLU MET ASN CYS ASP ILE ILE TYR VAL SEQRES 6 A 133 VAL PRO LEU PHE ILE SER TYR GLY LEU HIS VAL THR GLU SEQRES 7 A 133 ASP LEU PRO ASP LEU LEU GLY PHE PRO ARG GLY ARG GLY SEQRES 8 A 133 ILE LYS GLU GLY GLU PHE GLU GLY LYS LYS VAL VAL ILE SEQRES 9 A 133 CYS GLU PRO ILE GLY GLU ASP TYR PHE VAL THR TYR ALA SEQRES 10 A 133 ILE LEU ASN SER VAL PHE ARG ILE GLY ARG ASP GLY LYS SEQRES 11 A 133 GLY GLU GLU SEQRES 1 B 133 GLY MET ARG ARG GLY LEU VAL ILE VAL GLY HIS GLY SER SEQRES 2 B 133 GLN LEU ASN HIS TYR ARG GLU VAL MET GLU LEU HIS ARG SEQRES 3 B 133 LYS ARG ILE GLU GLU SER GLY ALA PHE ASP GLU VAL LYS SEQRES 4 B 133 ILE ALA PHE ALA ALA ARG LYS ARG ARG PRO MET PRO ASP SEQRES 5 B 133 GLU ALA ILE ARG GLU MET ASN CYS ASP ILE ILE TYR VAL SEQRES 6 B 133 VAL PRO LEU PHE ILE SER TYR GLY LEU HIS VAL THR GLU SEQRES 7 B 133 ASP LEU PRO ASP LEU LEU GLY PHE PRO ARG GLY ARG GLY SEQRES 8 B 133 ILE LYS GLU GLY GLU PHE GLU GLY LYS LYS VAL VAL ILE SEQRES 9 B 133 CYS GLU PRO ILE GLY GLU ASP TYR PHE VAL THR TYR ALA SEQRES 10 B 133 ILE LEU ASN SER VAL PHE ARG ILE GLY ARG ASP GLY LYS SEQRES 11 B 133 GLY GLU GLU SEQRES 1 C 133 GLY MET ARG ARG GLY LEU VAL ILE VAL GLY HIS GLY SER SEQRES 2 C 133 GLN LEU ASN HIS TYR ARG GLU VAL MET GLU LEU HIS ARG SEQRES 3 C 133 LYS ARG ILE GLU GLU SER GLY ALA PHE ASP GLU VAL LYS SEQRES 4 C 133 ILE ALA PHE ALA ALA ARG LYS ARG ARG PRO MET PRO ASP SEQRES 5 C 133 GLU ALA ILE ARG GLU MET ASN CYS ASP ILE ILE TYR VAL SEQRES 6 C 133 VAL PRO LEU PHE ILE SER TYR GLY LEU HIS VAL THR GLU SEQRES 7 C 133 ASP LEU PRO ASP LEU LEU GLY PHE PRO ARG GLY ARG GLY SEQRES 8 C 133 ILE LYS GLU GLY GLU PHE GLU GLY LYS LYS VAL VAL ILE SEQRES 9 C 133 CYS GLU PRO ILE GLY GLU ASP TYR PHE VAL THR TYR ALA SEQRES 10 C 133 ILE LEU ASN SER VAL PHE ARG ILE GLY ARG ASP GLY LYS SEQRES 11 C 133 GLY GLU GLU SEQRES 1 D 133 GLY MET ARG ARG GLY LEU VAL ILE VAL GLY HIS GLY SER SEQRES 2 D 133 GLN LEU ASN HIS TYR ARG GLU VAL MET GLU LEU HIS ARG SEQRES 3 D 133 LYS ARG ILE GLU GLU SER GLY ALA PHE ASP GLU VAL LYS SEQRES 4 D 133 ILE ALA PHE ALA ALA ARG LYS ARG ARG PRO MET PRO ASP SEQRES 5 D 133 GLU ALA ILE ARG GLU MET ASN CYS ASP ILE ILE TYR VAL SEQRES 6 D 133 VAL PRO LEU PHE ILE SER TYR GLY LEU HIS VAL THR GLU SEQRES 7 D 133 ASP LEU PRO ASP LEU LEU GLY PHE PRO ARG GLY ARG GLY SEQRES 8 D 133 ILE LYS GLU GLY GLU PHE GLU GLY LYS LYS VAL VAL ILE SEQRES 9 D 133 CYS GLU PRO ILE GLY GLU ASP TYR PHE VAL THR TYR ALA SEQRES 10 D 133 ILE LEU ASN SER VAL PHE ARG ILE GLY ARG ASP GLY LYS SEQRES 11 D 133 GLY GLU GLU HET SIR B1126 126 HET SIR D1126 126 HETNAM SIR COBALT SIROHYDROCHLORIN FORMUL 5 SIR 2(C42 H44 CO N4 O16 2+) FORMUL 7 HOH *183(H2 O) HELIX 1 1 ASN A 15 GLY A 32 1 18 HELIX 2 2 MET A 49 GLU A 56 1 8 HELIX 3 3 GLY A 72 GLU A 77 1 6 HELIX 4 4 GLU A 77 LEU A 83 1 7 HELIX 5 5 ASP A 110 ARG A 123 1 14 HELIX 6 6 ASN B 15 GLY B 32 1 18 HELIX 7 7 MET B 49 MET B 57 1 9 HELIX 8 8 GLY B 72 GLU B 77 1 6 HELIX 9 9 GLU B 77 GLY B 84 1 8 HELIX 10 10 PRO B 106 GLU B 109 5 4 HELIX 11 11 ASP B 110 ARG B 123 1 14 HELIX 12 12 ASN C 15 GLY C 32 1 18 HELIX 13 13 MET C 49 GLU C 56 1 8 HELIX 14 14 GLY C 72 GLU C 77 1 6 HELIX 15 15 GLU C 77 LEU C 83 1 7 HELIX 16 16 PRO C 106 GLU C 109 5 4 HELIX 17 17 ASP C 110 ARG C 123 1 14 HELIX 18 18 ASN D 15 SER D 31 1 17 HELIX 19 19 MET D 49 MET D 57 1 9 HELIX 20 20 GLY D 72 GLU D 77 1 6 HELIX 21 21 GLU D 77 LEU D 83 1 7 HELIX 22 22 ASP D 110 ARG D 123 1 14 SHEET 1 AA 5 GLU A 36 PHE A 41 0 SHEET 2 AA 5 ARG A 3 GLY A 9 1 O LEU A 5 N LYS A 38 SHEET 3 AA 5 ILE A 61 PRO A 66 1 O ILE A 61 N GLY A 4 SHEET 4 AA 5 LYS A 99 ILE A 103 1 O LYS A 100 N ILE A 62 SHEET 5 AA 5 LYS A 92 PHE A 96 -1 O LYS A 92 N ILE A 103 SHEET 1 BA 5 GLU B 36 PHE B 41 0 SHEET 2 BA 5 ARG B 3 GLY B 9 1 O LEU B 5 N LYS B 38 SHEET 3 BA 5 ILE B 61 PRO B 66 1 O ILE B 61 N GLY B 4 SHEET 4 BA 5 LYS B 99 ILE B 103 1 O LYS B 100 N ILE B 62 SHEET 5 BA 5 LYS B 92 PHE B 96 -1 O LYS B 92 N ILE B 103 SHEET 1 CA 5 GLU C 36 PHE C 41 0 SHEET 2 CA 5 ARG C 3 GLY C 9 1 O LEU C 5 N LYS C 38 SHEET 3 CA 5 ILE C 61 LEU C 67 1 O ILE C 61 N GLY C 4 SHEET 4 CA 5 LYS C 99 ILE C 103 1 O LYS C 100 N ILE C 62 SHEET 5 CA 5 GLU C 95 PHE C 96 -1 O PHE C 96 N LYS C 99 SHEET 1 DA 5 GLU D 36 PHE D 41 0 SHEET 2 DA 5 ARG D 3 GLY D 9 1 O LEU D 5 N LYS D 38 SHEET 3 DA 5 ILE D 61 PRO D 66 1 O ILE D 61 N GLY D 4 SHEET 4 DA 5 LYS D 99 ILE D 103 1 O LYS D 100 N ILE D 62 SHEET 5 DA 5 LYS D 92 PHE D 96 -1 O LYS D 92 N ILE D 103 CISPEP 1 ARG A 47 PRO A 48 0 0.76 CISPEP 2 ARG B 47 PRO B 48 0 -0.90 CISPEP 3 GLY C 11 SER C 12 0 -3.53 CISPEP 4 ARG C 47 PRO C 48 0 -6.01 CISPEP 5 ARG D 47 PRO D 48 0 -4.40 SITE 1 AC1 29 HIS A 10 GLY A 11 SER A 12 GLN A 13 SITE 2 AC1 29 ARG A 44 ARG A 46 PHE A 68 ILE A 69 SITE 3 AC1 29 SER A 70 GLY A 72 LEU A 73 HIS A 74 SITE 4 AC1 29 HOH A2005 HOH A2025 HIS B 10 GLY B 11 SITE 5 AC1 29 SER B 12 ARG B 44 ARG B 46 PHE B 68 SITE 6 AC1 29 ILE B 69 SER B 70 GLY B 72 LEU B 73 SITE 7 AC1 29 HIS B 74 HOH B2056 HOH B2057 HOH B2058 SITE 8 AC1 29 HOH B2059 SITE 1 AC2 28 HIS C 10 SER C 12 GLN C 13 TYR C 17 SITE 2 AC2 28 ARG C 44 ARG C 46 ARG C 47 ARG C 55 SITE 3 AC2 28 PHE C 68 ILE C 69 SER C 70 GLY C 72 SITE 4 AC2 28 LEU C 73 HIS C 74 HIS D 10 SER D 12 SITE 5 AC2 28 TYR D 17 ARG D 44 ARG D 46 PHE D 68 SITE 6 AC2 28 ILE D 69 SER D 70 GLY D 72 LEU D 73 SITE 7 AC2 28 HIS D 74 HOH D2047 HOH D2048 HOH D2049 CRYST1 47.010 99.000 116.660 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021272 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010101 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008572 0.00000 MTRIX1 1 -0.995150 0.096500 0.018980 7.48496 1 MTRIX2 1 0.094670 0.887500 0.450970 -6.19439 1 MTRIX3 1 0.026670 0.450580 -0.892340 24.90189 1 MTRIX1 2 0.270260 -0.323780 0.906710 -8.82397 1 MTRIX2 2 -0.226560 -0.936700 -0.266950 11.24481 1 MTRIX3 2 0.935750 -0.133280 -0.326510 14.95735 1 MTRIX1 3 -0.265270 0.212780 -0.940400 17.64079 1 MTRIX2 3 0.236390 -0.931220 -0.277380 9.17131 1 MTRIX3 3 -0.934750 -0.295890 0.196720 16.48726 1