data_2XX3 # _entry.id 2XX3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2XX3 PDBE EBI-45824 WWPDB D_1290045824 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1E2D unspecified 'HUMAN THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE MONOPHOSPHATE, ADENOSINE DIPHOSPHATE AND A MAGNESIUM-ION' PDB 1E2G unspecified 'HUMAN THYMIDYLATE KINASE COMPLEXED WITH ADP, TDP AND A MAGNESIUM-ION' PDB 1E9A unspecified 'HUMAN THYMIDYLATE KINASE COMPLEXED WITH THE BISUBSTRATE INHIBITOR AZTP5A' PDB 1E9B unspecified 'HUMAN THYMIDYLATE KINASE COMPLEXED WITH AZTMP AND APPNP' PDB 1E98 unspecified 'WILD TYPE HUMAN THYMIDYLATE KINASE COMPLEXED WITH AZTMP AND ADP' PDB 1NN3 unspecified 'CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH D4TMP +ADP' PDB 1E2E unspecified 'HUMAN THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE MONOPHOSPHATE, ADENOSINE DIPHOSPHATE,A MAGNESIUM-ION AND ALF3' PDB 1E9E unspecified 'MUTANT HUMAN THYMIDYLATE KINASE (F105Y) COMPLEXED WITH DTMP AND ADP' PDB 1E2Q unspecified 'HUMAN THYMIDYLATE KINASE COMPLEXED WITH TP5A AND A MAGNESIUM-ION' PDB 1E99 unspecified 'HUMAN THYMIDYLATE KINASE COMPLEXED WITH AZTMP AND ADP' PDB 1NMX unspecified 'CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH FLTMPAND ADP' PDB 1NN5 unspecified 'CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH D4TMP +APPNHP' PDB 1NMZ unspecified 'CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH NH2TMPAND APPNHP' PDB 1NN1 unspecified 'CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH DDTMPAND APPNHP' PDB 1E9D unspecified 'MUTANT HUMAN THYMIDYLATE KINASE (F105Y) COMPLEXED WITH AZTMP AND ADP' PDB 1NMY unspecified 'CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH FLTMPAND APPNHP' PDB 1E2F unspecified 'HUMAN THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE MONOPHOSPHATE, ADENOSINE DIPHOSPHATE AND A MAGNESIUM-ION' PDB 1NN0 unspecified 'CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH DDTMPAND ADP' PDB 1E9F unspecified 'MUTANT HUMAN THYMIDYLATE KINASE COMPLEXED WITH TMP AND ADP' PDB 1E9C unspecified 'MUTANT HUMAN THYMIDYLATE KINASE COMPLEXED WITH TMP AND APPNP' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XX3 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-11-08 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Caillat, C.' 1 'Meyer, P.' 2 # _citation.id primary _citation.title 'Novel Antiviral C5-Substituted Pyrimidine Acyclic Nucleoside Phosphonates Selected as Human Thymidylate Kinase Substrates.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 54 _citation.page_first 222 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21128666 _citation.pdbx_database_id_DOI 10.1021/JM1011462 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Topalis, D.' 1 primary 'Pradere, U.' 2 primary 'Roy, V.' 3 primary 'Caillat, C.' 4 primary 'Azzouzi, A.' 5 primary 'Broggi, J.' 6 primary 'Snoeck, R.' 7 primary 'Andrei, G.' 8 primary 'Lin, J.' 9 primary 'Eriksson, S.' 10 primary 'Alexandre, J.A.C.' 11 primary 'El-Amri, C.' 12 primary 'Deville-Bonne, D.' 13 primary 'Meyer, P.' 14 primary 'Balzarini, J.' 15 primary 'Agrofoglio, L.A.' 16 # _cell.entry_id 2XX3 _cell.length_a 102.440 _cell.length_b 38.320 _cell.length_c 73.160 _cell.angle_alpha 90.00 _cell.angle_beta 123.07 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XX3 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'THYMIDYLATE KINASE' 26027.740 1 2.7.4.9 ? ? '6 HISTIDINE TAG' 2 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn 'N1-[(E)-4-DIHYDROXYPHOSPHONYL-BUT-2-ENYL]-THYMINE' 340.164 1 ? ? ? ? 5 non-polymer syn 'NITRATE ION' 62.005 1 ? ? ? ? 6 water nat water 18.015 203 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DTMP KINASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMAARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKK SDVEDHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADA AKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIRTATEKPLGELWK ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMAARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKK SDVEDHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADA AKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIRTATEKPLGELWK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 ALA n 1 23 ALA n 1 24 ARG n 1 25 ARG n 1 26 GLY n 1 27 ALA n 1 28 LEU n 1 29 ILE n 1 30 VAL n 1 31 LEU n 1 32 GLU n 1 33 GLY n 1 34 VAL n 1 35 ASP n 1 36 ARG n 1 37 ALA n 1 38 GLY n 1 39 LYS n 1 40 SER n 1 41 THR n 1 42 GLN n 1 43 SER n 1 44 ARG n 1 45 LYS n 1 46 LEU n 1 47 VAL n 1 48 GLU n 1 49 ALA n 1 50 LEU n 1 51 CYS n 1 52 ALA n 1 53 ALA n 1 54 GLY n 1 55 HIS n 1 56 ARG n 1 57 ALA n 1 58 GLU n 1 59 LEU n 1 60 LEU n 1 61 ARG n 1 62 PHE n 1 63 PRO n 1 64 GLU n 1 65 ARG n 1 66 SER n 1 67 THR n 1 68 GLU n 1 69 ILE n 1 70 GLY n 1 71 LYS n 1 72 LEU n 1 73 LEU n 1 74 SER n 1 75 SER n 1 76 TYR n 1 77 LEU n 1 78 GLN n 1 79 LYS n 1 80 LYS n 1 81 SER n 1 82 ASP n 1 83 VAL n 1 84 GLU n 1 85 ASP n 1 86 HIS n 1 87 SER n 1 88 VAL n 1 89 HIS n 1 90 LEU n 1 91 LEU n 1 92 PHE n 1 93 SER n 1 94 ALA n 1 95 ASN n 1 96 ARG n 1 97 TRP n 1 98 GLU n 1 99 GLN n 1 100 VAL n 1 101 PRO n 1 102 LEU n 1 103 ILE n 1 104 LYS n 1 105 GLU n 1 106 LYS n 1 107 LEU n 1 108 SER n 1 109 GLN n 1 110 GLY n 1 111 VAL n 1 112 THR n 1 113 LEU n 1 114 VAL n 1 115 VAL n 1 116 ASP n 1 117 ARG n 1 118 TYR n 1 119 ALA n 1 120 PHE n 1 121 SER n 1 122 GLY n 1 123 VAL n 1 124 ALA n 1 125 PHE n 1 126 THR n 1 127 GLY n 1 128 ALA n 1 129 LYS n 1 130 GLU n 1 131 ASN n 1 132 PHE n 1 133 SER n 1 134 LEU n 1 135 ASP n 1 136 TRP n 1 137 CYS n 1 138 LYS n 1 139 GLN n 1 140 PRO n 1 141 ASP n 1 142 VAL n 1 143 GLY n 1 144 LEU n 1 145 PRO n 1 146 LYS n 1 147 PRO n 1 148 ASP n 1 149 LEU n 1 150 VAL n 1 151 LEU n 1 152 PHE n 1 153 LEU n 1 154 GLN n 1 155 LEU n 1 156 GLN n 1 157 LEU n 1 158 ALA n 1 159 ASP n 1 160 ALA n 1 161 ALA n 1 162 LYS n 1 163 ARG n 1 164 GLY n 1 165 ALA n 1 166 PHE n 1 167 GLY n 1 168 HIS n 1 169 GLU n 1 170 ARG n 1 171 TYR n 1 172 GLU n 1 173 ASN n 1 174 GLY n 1 175 ALA n 1 176 PHE n 1 177 GLN n 1 178 GLU n 1 179 ARG n 1 180 ALA n 1 181 LEU n 1 182 ARG n 1 183 CYS n 1 184 PHE n 1 185 HIS n 1 186 GLN n 1 187 LEU n 1 188 MET n 1 189 LYS n 1 190 ASP n 1 191 THR n 1 192 THR n 1 193 LEU n 1 194 ASN n 1 195 TRP n 1 196 LYS n 1 197 MET n 1 198 VAL n 1 199 ASP n 1 200 ALA n 1 201 SER n 1 202 LYS n 1 203 SER n 1 204 ILE n 1 205 GLU n 1 206 ALA n 1 207 VAL n 1 208 HIS n 1 209 GLU n 1 210 ASP n 1 211 ILE n 1 212 ARG n 1 213 VAL n 1 214 LEU n 1 215 SER n 1 216 GLU n 1 217 ASP n 1 218 ALA n 1 219 ILE n 1 220 ARG n 1 221 THR n 1 222 ALA n 1 223 THR n 1 224 GLU n 1 225 LYS n 1 226 PRO n 1 227 LEU n 1 228 GLY n 1 229 GLU n 1 230 LEU n 1 231 TRP n 1 232 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KTHY_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P23919 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2XX3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 21 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 232 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P23919 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 212 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 212 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2XX3 MET A 1 ? UNP P23919 ? ? 'expression tag' -19 1 1 2XX3 GLY A 2 ? UNP P23919 ? ? 'expression tag' -18 2 1 2XX3 SER A 3 ? UNP P23919 ? ? 'expression tag' -17 3 1 2XX3 SER A 4 ? UNP P23919 ? ? 'expression tag' -16 4 1 2XX3 HIS A 5 ? UNP P23919 ? ? 'expression tag' -15 5 1 2XX3 HIS A 6 ? UNP P23919 ? ? 'expression tag' -14 6 1 2XX3 HIS A 7 ? UNP P23919 ? ? 'expression tag' -13 7 1 2XX3 HIS A 8 ? UNP P23919 ? ? 'expression tag' -12 8 1 2XX3 HIS A 9 ? UNP P23919 ? ? 'expression tag' -11 9 1 2XX3 HIS A 10 ? UNP P23919 ? ? 'expression tag' -10 10 1 2XX3 SER A 11 ? UNP P23919 ? ? 'expression tag' -9 11 1 2XX3 SER A 12 ? UNP P23919 ? ? 'expression tag' -8 12 1 2XX3 GLY A 13 ? UNP P23919 ? ? 'expression tag' -7 13 1 2XX3 LEU A 14 ? UNP P23919 ? ? 'expression tag' -6 14 1 2XX3 VAL A 15 ? UNP P23919 ? ? 'expression tag' -5 15 1 2XX3 PRO A 16 ? UNP P23919 ? ? 'expression tag' -4 16 1 2XX3 ARG A 17 ? UNP P23919 ? ? 'expression tag' -3 17 1 2XX3 GLY A 18 ? UNP P23919 ? ? 'expression tag' -2 18 1 2XX3 SER A 19 ? UNP P23919 ? ? 'expression tag' -1 19 1 2XX3 HIS A 20 ? UNP P23919 ? ? 'expression tag' 0 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NO3 non-polymer . 'NITRATE ION' ? 'N O3 -1' 62.005 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TAE non-polymer . 'N1-[(E)-4-DIHYDROXYPHOSPHONYL-BUT-2-ENYL]-THYMINE' ? 'C9 H14 N2 O8 P2' 340.164 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2XX3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_percent_sol 51.23 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 7.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_wavelength 0.98 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2XX3 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 35.00 _reflns.d_resolution_high 2.20 _reflns.number_obs 16363 _reflns.number_all ? _reflns.percent_possible_obs 95.7 _reflns.pdbx_Rmerge_I_obs 0.12 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.90 _reflns.B_iso_Wilson_estimate 19.74 _reflns.pdbx_redundancy 2 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2XX3 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 15820 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.40 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1911 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1881 _refine.ls_R_factor_R_free 0.2354 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.33 _refine.ls_number_reflns_R_free 1001 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9307 _refine.correlation_coeff_Fo_to_Fc_free 0.8841 _refine.B_iso_mean 26.88 _refine.aniso_B[1][1] -0.4355 _refine.aniso_B[2][2] -0.4645 _refine.aniso_B[3][3] 0.9000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 1.9004 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;IDEAL-DIST CONTACT TERM CONTACT SETUP. RESIDUE TYPES WITHOUT CCP4 ATOM TYPE IN LIBRARY=ADP MG TAE NO3. NUMBER OF ATOMS WITH PROPER CCP4 ATOM TYPE=1790. NUMBER WITH APPR DEFAULT CCP4 ATOM TYPE=52. NUMBER TREATED BY BAD NON-BONDED CONTACTS=1. ; _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI 0.178 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.163 _refine.pdbx_overall_SU_R_Blow_DPI 0.194 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.169 # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 2XX3 _refine_analyze.Luzzati_coordinate_error_obs 0.245 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1585 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 53 _refine_hist.number_atoms_solvent 203 _refine_hist.number_atoms_total 1841 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 18.40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.007 ? 2.00 1667 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 1.00 ? 2.00 2254 'X-RAY DIFFRACTION' HARMONIC t_dihedral_angle_d ? ? 2.00 592 'X-RAY DIFFRACTION' SINUSOIDAL t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? 2.00 45 'X-RAY DIFFRACTION' HARMONIC t_gen_planes ? ? 5.00 238 'X-RAY DIFFRACTION' HARMONIC t_it ? ? 20.00 1646 'X-RAY DIFFRACTION' HARMONIC t_nbd ? ? 5.00 0 'X-RAY DIFFRACTION' SEMIHARMONIC t_omega_torsion 2.24 ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion 17.76 ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? 0.00 4 'X-RAY DIFFRACTION' HARMONIC t_chiral_improper_torsion ? ? 5.00 202 'X-RAY DIFFRACTION' SEMIHARMONIC t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? 4.00 2094 'X-RAY DIFFRACTION' SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.14 _refine_ls_shell.number_reflns_R_work 2646 _refine_ls_shell.R_factor_R_work 0.2166 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2301 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 5.80 _refine_ls_shell.number_reflns_R_free 163 _refine_ls_shell.number_reflns_all 2809 _refine_ls_shell.R_factor_all 0.2174 # _struct.entry_id 2XX3 _struct.title 'HUMAN THYMIDYLATE KINASE COMPLEXED WITH thymidine butenyl phosphonate monophosphate and ADP' _struct.pdbx_descriptor 'THYMIDYLATE KINASE (E.C.2.7.4.9)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XX3 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'TRANSFERASE, ACYCLIC NUCLEOSIDE PHOSPHONATE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 38 ? ALA A 52 ? GLY A 18 ALA A 32 1 ? 15 HELX_P HELX_P2 2 THR A 67 ? LEU A 73 ? THR A 47 LEU A 53 1 ? 7 HELX_P HELX_P3 3 GLU A 84 ? GLU A 98 ? GLU A 64 GLU A 78 1 ? 15 HELX_P HELX_P4 4 GLN A 99 ? GLN A 109 ? GLN A 79 GLN A 89 1 ? 11 HELX_P HELX_P5 5 TYR A 118 ? LYS A 129 ? TYR A 98 LYS A 109 1 ? 12 HELX_P HELX_P6 6 SER A 133 ? GLN A 139 ? SER A 113 GLN A 119 1 ? 7 HELX_P HELX_P7 7 PRO A 140 ? VAL A 142 ? PRO A 120 VAL A 122 5 ? 3 HELX_P HELX_P8 8 GLN A 156 ? LYS A 162 ? GLN A 136 LYS A 142 1 ? 7 HELX_P HELX_P9 9 HIS A 168 ? GLU A 172 ? HIS A 148 GLU A 152 5 ? 5 HELX_P HELX_P10 10 ASN A 173 ? MET A 188 ? ASN A 153 MET A 168 1 ? 16 HELX_P HELX_P11 11 SER A 203 ? THR A 221 ? SER A 183 THR A 201 1 ? 19 HELX_P HELX_P12 12 ALA A 222 ? LYS A 225 ? ALA A 202 LYS A 205 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? B ADP . O2B ? ? ? 1_555 C MG . MG ? ? A ADP 302 A MG 401 1_555 ? ? ? ? ? ? ? 2.071 ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 401 A HOH 2020 1_555 ? ? ? ? ? ? ? 1.950 ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 401 A HOH 2022 1_555 ? ? ? ? ? ? ? 1.954 ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 401 A HOH 2104 1_555 ? ? ? ? ? ? ? 2.052 ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 A SER 40 OG ? ? A MG 401 A SER 20 1_555 ? ? ? ? ? ? ? 2.427 ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 401 A HOH 2019 1_555 ? ? ? ? ? ? ? 2.299 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PHE _struct_mon_prot_cis.label_seq_id 62 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PHE _struct_mon_prot_cis.auth_seq_id 42 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 63 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 43 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.77 # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ALA A 57 ? ARG A 61 ? ALA A 37 ARG A 41 AA 2 THR A 112 ? ASP A 116 ? THR A 92 ASP A 96 AA 3 LEU A 28 ? GLU A 32 ? LEU A 8 GLU A 12 AA 4 LEU A 149 ? GLN A 154 ? LEU A 129 GLN A 134 AA 5 TRP A 195 ? ASP A 199 ? TRP A 175 ASP A 179 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N GLU A 58 ? N GLU A 38 O THR A 112 ? O THR A 92 AA 2 3 N VAL A 115 ? N VAL A 95 O ILE A 29 ? O ILE A 9 AA 3 4 N VAL A 30 ? N VAL A 10 O LEU A 149 ? O LEU A 129 AA 4 5 N PHE A 152 ? N PHE A 132 O LYS A 196 ? O LYS A 176 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 23 'BINDING SITE FOR RESIDUE ADP A 302' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MG A 401' AC3 Software ? ? ? ? 13 'BINDING SITE FOR RESIDUE TAE A 1213' AC4 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE NO3 A 1214' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 23 ARG A 36 ? ARG A 16 . ? 1_555 ? 2 AC1 23 ALA A 37 ? ALA A 17 . ? 1_555 ? 3 AC1 23 GLY A 38 ? GLY A 18 . ? 1_555 ? 4 AC1 23 LYS A 39 ? LYS A 19 . ? 1_555 ? 5 AC1 23 SER A 40 ? SER A 20 . ? 1_555 ? 6 AC1 23 THR A 41 ? THR A 21 . ? 1_555 ? 7 AC1 23 ARG A 163 ? ARG A 143 . ? 1_555 ? 8 AC1 23 GLY A 164 ? GLY A 144 . ? 1_555 ? 9 AC1 23 ALA A 165 ? ALA A 145 . ? 1_555 ? 10 AC1 23 MET A 197 ? MET A 177 . ? 4_445 ? 11 AC1 23 VAL A 198 ? VAL A 178 . ? 4_445 ? 12 AC1 23 ASP A 199 ? ASP A 179 . ? 4_445 ? 13 AC1 23 LYS A 202 ? LYS A 182 . ? 1_555 ? 14 AC1 23 ILE A 204 ? ILE A 184 . ? 1_555 ? 15 AC1 23 MG C . ? MG A 401 . ? 1_555 ? 16 AC1 23 HOH F . ? HOH A 2019 . ? 1_555 ? 17 AC1 23 HOH F . ? HOH A 2027 . ? 1_555 ? 18 AC1 23 HOH F . ? HOH A 2104 . ? 1_555 ? 19 AC1 23 HOH F . ? HOH A 2125 . ? 4_445 ? 20 AC1 23 HOH F . ? HOH A 2141 . ? 1_555 ? 21 AC1 23 HOH F . ? HOH A 2146 . ? 1_555 ? 22 AC1 23 HOH F . ? HOH A 2174 . ? 4_445 ? 23 AC1 23 HOH F . ? HOH A 2202 . ? 1_555 ? 24 AC2 6 SER A 40 ? SER A 20 . ? 1_555 ? 25 AC2 6 ADP B . ? ADP A 302 . ? 1_555 ? 26 AC2 6 HOH F . ? HOH A 2019 . ? 1_555 ? 27 AC2 6 HOH F . ? HOH A 2020 . ? 1_555 ? 28 AC2 6 HOH F . ? HOH A 2022 . ? 1_555 ? 29 AC2 6 HOH F . ? HOH A 2104 . ? 1_555 ? 30 AC3 13 PHE A 62 ? PHE A 42 . ? 1_555 ? 31 AC3 13 ARG A 65 ? ARG A 45 . ? 1_555 ? 32 AC3 13 PHE A 92 ? PHE A 72 . ? 1_555 ? 33 AC3 13 ARG A 96 ? ARG A 76 . ? 1_555 ? 34 AC3 13 ARG A 117 ? ARG A 97 . ? 1_555 ? 35 AC3 13 GLY A 122 ? GLY A 102 . ? 1_555 ? 36 AC3 13 PHE A 125 ? PHE A 105 . ? 1_555 ? 37 AC3 13 HIS A 168 ? HIS A 148 . ? 1_555 ? 38 AC3 13 ARG A 170 ? ARG A 150 . ? 1_555 ? 39 AC3 13 TYR A 171 ? TYR A 151 . ? 1_555 ? 40 AC3 13 HOH F . ? HOH A 2022 . ? 1_555 ? 41 AC3 13 HOH F . ? HOH A 2084 . ? 1_555 ? 42 AC3 13 HOH F . ? HOH A 2143 . ? 1_555 ? 43 AC4 7 LYS A 45 ? LYS A 25 . ? 4_455 ? 44 AC4 7 GLN A 154 ? GLN A 134 . ? 1_555 ? 45 AC4 7 LEU A 181 ? LEU A 161 . ? 1_555 ? 46 AC4 7 HIS A 185 ? HIS A 165 . ? 1_555 ? 47 AC4 7 ILE A 204 ? ILE A 184 . ? 4_455 ? 48 AC4 7 HOH F . ? HOH A 2126 . ? 1_555 ? 49 AC4 7 HOH F . ? HOH A 2129 . ? 1_555 ? # _database_PDB_matrix.entry_id 2XX3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2XX3 _atom_sites.fract_transf_matrix[1][1] 0.009762 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006356 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026096 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016311 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -19 ? ? ? A . n A 1 2 GLY 2 -18 ? ? ? A . n A 1 3 SER 3 -17 ? ? ? A . n A 1 4 SER 4 -16 ? ? ? A . n A 1 5 HIS 5 -15 ? ? ? A . n A 1 6 HIS 6 -14 ? ? ? A . n A 1 7 HIS 7 -13 ? ? ? A . n A 1 8 HIS 8 -12 ? ? ? A . n A 1 9 HIS 9 -11 ? ? ? A . n A 1 10 HIS 10 -10 ? ? ? A . n A 1 11 SER 11 -9 ? ? ? A . n A 1 12 SER 12 -8 ? ? ? A . n A 1 13 GLY 13 -7 ? ? ? A . n A 1 14 LEU 14 -6 ? ? ? A . n A 1 15 VAL 15 -5 ? ? ? A . n A 1 16 PRO 16 -4 ? ? ? A . n A 1 17 ARG 17 -3 ? ? ? A . n A 1 18 GLY 18 -2 ? ? ? A . n A 1 19 SER 19 -1 ? ? ? A . n A 1 20 HIS 20 0 ? ? ? A . n A 1 21 MET 21 1 ? ? ? A . n A 1 22 ALA 22 2 ? ? ? A . n A 1 23 ALA 23 3 3 ALA ALA A . n A 1 24 ARG 24 4 4 ARG ARG A . n A 1 25 ARG 25 5 5 ARG ARG A . n A 1 26 GLY 26 6 6 GLY GLY A . n A 1 27 ALA 27 7 7 ALA ALA A . n A 1 28 LEU 28 8 8 LEU LEU A . n A 1 29 ILE 29 9 9 ILE ILE A . n A 1 30 VAL 30 10 10 VAL VAL A . n A 1 31 LEU 31 11 11 LEU LEU A . n A 1 32 GLU 32 12 12 GLU GLU A . n A 1 33 GLY 33 13 13 GLY GLY A . n A 1 34 VAL 34 14 14 VAL VAL A . n A 1 35 ASP 35 15 15 ASP ASP A . n A 1 36 ARG 36 16 16 ARG ARG A . n A 1 37 ALA 37 17 17 ALA ALA A . n A 1 38 GLY 38 18 18 GLY GLY A . n A 1 39 LYS 39 19 19 LYS LYS A . n A 1 40 SER 40 20 20 SER SER A . n A 1 41 THR 41 21 21 THR THR A . n A 1 42 GLN 42 22 22 GLN GLN A . n A 1 43 SER 43 23 23 SER SER A . n A 1 44 ARG 44 24 24 ARG ARG A . n A 1 45 LYS 45 25 25 LYS LYS A . n A 1 46 LEU 46 26 26 LEU LEU A . n A 1 47 VAL 47 27 27 VAL VAL A . n A 1 48 GLU 48 28 28 GLU GLU A . n A 1 49 ALA 49 29 29 ALA ALA A . n A 1 50 LEU 50 30 30 LEU LEU A . n A 1 51 CYS 51 31 31 CYS CYS A . n A 1 52 ALA 52 32 32 ALA ALA A . n A 1 53 ALA 53 33 ? ? ? A . n A 1 54 GLY 54 34 ? ? ? A . n A 1 55 HIS 55 35 35 HIS HIS A . n A 1 56 ARG 56 36 36 ARG ARG A . n A 1 57 ALA 57 37 37 ALA ALA A . n A 1 58 GLU 58 38 38 GLU GLU A . n A 1 59 LEU 59 39 39 LEU LEU A . n A 1 60 LEU 60 40 40 LEU LEU A . n A 1 61 ARG 61 41 41 ARG ARG A . n A 1 62 PHE 62 42 42 PHE PHE A . n A 1 63 PRO 63 43 43 PRO PRO A . n A 1 64 GLU 64 44 44 GLU GLU A . n A 1 65 ARG 65 45 45 ARG ARG A . n A 1 66 SER 66 46 46 SER SER A . n A 1 67 THR 67 47 47 THR THR A . n A 1 68 GLU 68 48 48 GLU GLU A . n A 1 69 ILE 69 49 49 ILE ILE A . n A 1 70 GLY 70 50 50 GLY GLY A . n A 1 71 LYS 71 51 51 LYS LYS A . n A 1 72 LEU 72 52 52 LEU LEU A . n A 1 73 LEU 73 53 53 LEU LEU A . n A 1 74 SER 74 54 54 SER SER A . n A 1 75 SER 75 55 ? ? ? A . n A 1 76 TYR 76 56 ? ? ? A . n A 1 77 LEU 77 57 ? ? ? A . n A 1 78 GLN 78 58 ? ? ? A . n A 1 79 LYS 79 59 ? ? ? A . n A 1 80 LYS 80 60 ? ? ? A . n A 1 81 SER 81 61 ? ? ? A . n A 1 82 ASP 82 62 ? ? ? A . n A 1 83 VAL 83 63 63 VAL VAL A . n A 1 84 GLU 84 64 64 GLU GLU A . n A 1 85 ASP 85 65 65 ASP ASP A . n A 1 86 HIS 86 66 66 HIS HIS A . n A 1 87 SER 87 67 67 SER SER A . n A 1 88 VAL 88 68 68 VAL VAL A . n A 1 89 HIS 89 69 69 HIS HIS A . n A 1 90 LEU 90 70 70 LEU LEU A . n A 1 91 LEU 91 71 71 LEU LEU A . n A 1 92 PHE 92 72 72 PHE PHE A . n A 1 93 SER 93 73 73 SER SER A . n A 1 94 ALA 94 74 74 ALA ALA A . n A 1 95 ASN 95 75 75 ASN ASN A . n A 1 96 ARG 96 76 76 ARG ARG A . n A 1 97 TRP 97 77 77 TRP TRP A . n A 1 98 GLU 98 78 78 GLU GLU A . n A 1 99 GLN 99 79 79 GLN GLN A . n A 1 100 VAL 100 80 80 VAL VAL A . n A 1 101 PRO 101 81 81 PRO PRO A . n A 1 102 LEU 102 82 82 LEU LEU A . n A 1 103 ILE 103 83 83 ILE ILE A . n A 1 104 LYS 104 84 84 LYS LYS A . n A 1 105 GLU 105 85 85 GLU GLU A . n A 1 106 LYS 106 86 86 LYS LYS A . n A 1 107 LEU 107 87 87 LEU LEU A . n A 1 108 SER 108 88 88 SER SER A . n A 1 109 GLN 109 89 89 GLN GLN A . n A 1 110 GLY 110 90 90 GLY GLY A . n A 1 111 VAL 111 91 91 VAL VAL A . n A 1 112 THR 112 92 92 THR THR A . n A 1 113 LEU 113 93 93 LEU LEU A . n A 1 114 VAL 114 94 94 VAL VAL A . n A 1 115 VAL 115 95 95 VAL VAL A . n A 1 116 ASP 116 96 96 ASP ASP A . n A 1 117 ARG 117 97 97 ARG ARG A . n A 1 118 TYR 118 98 98 TYR TYR A . n A 1 119 ALA 119 99 99 ALA ALA A . n A 1 120 PHE 120 100 100 PHE PHE A . n A 1 121 SER 121 101 101 SER SER A . n A 1 122 GLY 122 102 102 GLY GLY A . n A 1 123 VAL 123 103 103 VAL VAL A . n A 1 124 ALA 124 104 104 ALA ALA A . n A 1 125 PHE 125 105 105 PHE PHE A . n A 1 126 THR 126 106 106 THR THR A . n A 1 127 GLY 127 107 107 GLY GLY A . n A 1 128 ALA 128 108 108 ALA ALA A . n A 1 129 LYS 129 109 109 LYS LYS A . n A 1 130 GLU 130 110 110 GLU GLU A . n A 1 131 ASN 131 111 111 ASN ASN A . n A 1 132 PHE 132 112 112 PHE PHE A . n A 1 133 SER 133 113 113 SER SER A . n A 1 134 LEU 134 114 114 LEU LEU A . n A 1 135 ASP 135 115 115 ASP ASP A . n A 1 136 TRP 136 116 116 TRP TRP A . n A 1 137 CYS 137 117 117 CYS CYS A . n A 1 138 LYS 138 118 118 LYS LYS A . n A 1 139 GLN 139 119 119 GLN GLN A . n A 1 140 PRO 140 120 120 PRO PRO A . n A 1 141 ASP 141 121 121 ASP ASP A . n A 1 142 VAL 142 122 122 VAL VAL A . n A 1 143 GLY 143 123 123 GLY GLY A . n A 1 144 LEU 144 124 124 LEU LEU A . n A 1 145 PRO 145 125 125 PRO PRO A . n A 1 146 LYS 146 126 126 LYS LYS A . n A 1 147 PRO 147 127 127 PRO PRO A . n A 1 148 ASP 148 128 128 ASP ASP A . n A 1 149 LEU 149 129 129 LEU LEU A . n A 1 150 VAL 150 130 130 VAL VAL A . n A 1 151 LEU 151 131 131 LEU LEU A . n A 1 152 PHE 152 132 132 PHE PHE A . n A 1 153 LEU 153 133 133 LEU LEU A . n A 1 154 GLN 154 134 134 GLN GLN A . n A 1 155 LEU 155 135 135 LEU LEU A . n A 1 156 GLN 156 136 136 GLN GLN A . n A 1 157 LEU 157 137 137 LEU LEU A . n A 1 158 ALA 158 138 138 ALA ALA A . n A 1 159 ASP 159 139 139 ASP ASP A . n A 1 160 ALA 160 140 140 ALA ALA A . n A 1 161 ALA 161 141 141 ALA ALA A . n A 1 162 LYS 162 142 142 LYS LYS A . n A 1 163 ARG 163 143 143 ARG ARG A . n A 1 164 GLY 164 144 144 GLY GLY A . n A 1 165 ALA 165 145 145 ALA ALA A . n A 1 166 PHE 166 146 146 PHE PHE A . n A 1 167 GLY 167 147 147 GLY GLY A . n A 1 168 HIS 168 148 148 HIS HIS A . n A 1 169 GLU 169 149 149 GLU GLU A . n A 1 170 ARG 170 150 150 ARG ARG A . n A 1 171 TYR 171 151 151 TYR TYR A . n A 1 172 GLU 172 152 152 GLU GLU A . n A 1 173 ASN 173 153 153 ASN ASN A . n A 1 174 GLY 174 154 154 GLY GLY A . n A 1 175 ALA 175 155 155 ALA ALA A . n A 1 176 PHE 176 156 156 PHE PHE A . n A 1 177 GLN 177 157 157 GLN GLN A . n A 1 178 GLU 178 158 158 GLU GLU A . n A 1 179 ARG 179 159 159 ARG ARG A . n A 1 180 ALA 180 160 160 ALA ALA A . n A 1 181 LEU 181 161 161 LEU LEU A . n A 1 182 ARG 182 162 162 ARG ARG A . n A 1 183 CYS 183 163 163 CYS CYS A . n A 1 184 PHE 184 164 164 PHE PHE A . n A 1 185 HIS 185 165 165 HIS HIS A . n A 1 186 GLN 186 166 166 GLN GLN A . n A 1 187 LEU 187 167 167 LEU LEU A . n A 1 188 MET 188 168 168 MET MET A . n A 1 189 LYS 189 169 169 LYS LYS A . n A 1 190 ASP 190 170 170 ASP ASP A . n A 1 191 THR 191 171 171 THR THR A . n A 1 192 THR 192 172 172 THR THR A . n A 1 193 LEU 193 173 173 LEU LEU A . n A 1 194 ASN 194 174 174 ASN ASN A . n A 1 195 TRP 195 175 175 TRP TRP A . n A 1 196 LYS 196 176 176 LYS LYS A . n A 1 197 MET 197 177 177 MET MET A . n A 1 198 VAL 198 178 178 VAL VAL A . n A 1 199 ASP 199 179 179 ASP ASP A . n A 1 200 ALA 200 180 180 ALA ALA A . n A 1 201 SER 201 181 181 SER SER A . n A 1 202 LYS 202 182 182 LYS LYS A . n A 1 203 SER 203 183 183 SER SER A . n A 1 204 ILE 204 184 184 ILE ILE A . n A 1 205 GLU 205 185 185 GLU GLU A . n A 1 206 ALA 206 186 186 ALA ALA A . n A 1 207 VAL 207 187 187 VAL VAL A . n A 1 208 HIS 208 188 188 HIS HIS A . n A 1 209 GLU 209 189 189 GLU GLU A . n A 1 210 ASP 210 190 190 ASP ASP A . n A 1 211 ILE 211 191 191 ILE ILE A . n A 1 212 ARG 212 192 192 ARG ARG A . n A 1 213 VAL 213 193 193 VAL VAL A . n A 1 214 LEU 214 194 194 LEU LEU A . n A 1 215 SER 215 195 195 SER SER A . n A 1 216 GLU 216 196 196 GLU GLU A . n A 1 217 ASP 217 197 197 ASP ASP A . n A 1 218 ALA 218 198 198 ALA ALA A . n A 1 219 ILE 219 199 199 ILE ILE A . n A 1 220 ARG 220 200 200 ARG ARG A . n A 1 221 THR 221 201 201 THR THR A . n A 1 222 ALA 222 202 202 ALA ALA A . n A 1 223 THR 223 203 203 THR THR A . n A 1 224 GLU 224 204 204 GLU GLU A . n A 1 225 LYS 225 205 205 LYS LYS A . n A 1 226 PRO 226 206 206 PRO PRO A . n A 1 227 LEU 227 207 207 LEU LEU A . n A 1 228 GLY 228 208 208 GLY GLY A . n A 1 229 GLU 229 209 209 GLU GLU A . n A 1 230 LEU 230 210 210 LEU LEU A . n A 1 231 TRP 231 211 211 TRP TRP A . n A 1 232 LYS 232 212 212 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP 1 302 302 ADP ADP A . C 3 MG 1 401 401 MG MG A . D 4 TAE 1 1213 1213 TAE TAE A . E 5 NO3 1 1214 1214 NO3 NO3 A . F 6 HOH 1 2001 2001 HOH HOH A . F 6 HOH 2 2002 2002 HOH HOH A . F 6 HOH 3 2003 2003 HOH HOH A . F 6 HOH 4 2004 2004 HOH HOH A . F 6 HOH 5 2005 2005 HOH HOH A . F 6 HOH 6 2006 2006 HOH HOH A . F 6 HOH 7 2007 2007 HOH HOH A . F 6 HOH 8 2008 2008 HOH HOH A . F 6 HOH 9 2009 2009 HOH HOH A . F 6 HOH 10 2010 2010 HOH HOH A . F 6 HOH 11 2011 2011 HOH HOH A . F 6 HOH 12 2012 2012 HOH HOH A . F 6 HOH 13 2013 2013 HOH HOH A . F 6 HOH 14 2014 2014 HOH HOH A . F 6 HOH 15 2015 2015 HOH HOH A . F 6 HOH 16 2016 2016 HOH HOH A . F 6 HOH 17 2017 2017 HOH HOH A . F 6 HOH 18 2018 2018 HOH HOH A . F 6 HOH 19 2019 2019 HOH HOH A . F 6 HOH 20 2020 2020 HOH HOH A . F 6 HOH 21 2021 2021 HOH HOH A . F 6 HOH 22 2022 2022 HOH HOH A . F 6 HOH 23 2023 2023 HOH HOH A . F 6 HOH 24 2024 2024 HOH HOH A . F 6 HOH 25 2025 2025 HOH HOH A . F 6 HOH 26 2026 2026 HOH HOH A . F 6 HOH 27 2027 2027 HOH HOH A . F 6 HOH 28 2028 2028 HOH HOH A . F 6 HOH 29 2029 2029 HOH HOH A . F 6 HOH 30 2030 2030 HOH HOH A . F 6 HOH 31 2031 2031 HOH HOH A . F 6 HOH 32 2032 2032 HOH HOH A . F 6 HOH 33 2033 2033 HOH HOH A . F 6 HOH 34 2034 2034 HOH HOH A . F 6 HOH 35 2035 2035 HOH HOH A . F 6 HOH 36 2036 2036 HOH HOH A . F 6 HOH 37 2037 2037 HOH HOH A . F 6 HOH 38 2038 2038 HOH HOH A . F 6 HOH 39 2039 2039 HOH HOH A . F 6 HOH 40 2040 2040 HOH HOH A . F 6 HOH 41 2041 2041 HOH HOH A . F 6 HOH 42 2042 2042 HOH HOH A . F 6 HOH 43 2043 2043 HOH HOH A . F 6 HOH 44 2044 2044 HOH HOH A . F 6 HOH 45 2045 2045 HOH HOH A . F 6 HOH 46 2046 2046 HOH HOH A . F 6 HOH 47 2047 2047 HOH HOH A . F 6 HOH 48 2048 2048 HOH HOH A . F 6 HOH 49 2049 2049 HOH HOH A . F 6 HOH 50 2050 2050 HOH HOH A . F 6 HOH 51 2051 2051 HOH HOH A . F 6 HOH 52 2052 2052 HOH HOH A . F 6 HOH 53 2053 2053 HOH HOH A . F 6 HOH 54 2054 2054 HOH HOH A . F 6 HOH 55 2055 2055 HOH HOH A . F 6 HOH 56 2056 2056 HOH HOH A . F 6 HOH 57 2057 2057 HOH HOH A . F 6 HOH 58 2058 2058 HOH HOH A . F 6 HOH 59 2059 2059 HOH HOH A . F 6 HOH 60 2060 2060 HOH HOH A . F 6 HOH 61 2061 2061 HOH HOH A . F 6 HOH 62 2062 2062 HOH HOH A . F 6 HOH 63 2063 2063 HOH HOH A . F 6 HOH 64 2064 2064 HOH HOH A . F 6 HOH 65 2065 2065 HOH HOH A . F 6 HOH 66 2066 2066 HOH HOH A . F 6 HOH 67 2067 2067 HOH HOH A . F 6 HOH 68 2068 2068 HOH HOH A . F 6 HOH 69 2069 2069 HOH HOH A . F 6 HOH 70 2070 2070 HOH HOH A . F 6 HOH 71 2071 2071 HOH HOH A . F 6 HOH 72 2072 2072 HOH HOH A . F 6 HOH 73 2073 2073 HOH HOH A . F 6 HOH 74 2074 2074 HOH HOH A . F 6 HOH 75 2075 2075 HOH HOH A . F 6 HOH 76 2076 2076 HOH HOH A . F 6 HOH 77 2077 2077 HOH HOH A . F 6 HOH 78 2078 2078 HOH HOH A . F 6 HOH 79 2079 2079 HOH HOH A . F 6 HOH 80 2080 2080 HOH HOH A . F 6 HOH 81 2081 2081 HOH HOH A . F 6 HOH 82 2082 2082 HOH HOH A . F 6 HOH 83 2083 2083 HOH HOH A . F 6 HOH 84 2084 2084 HOH HOH A . F 6 HOH 85 2085 2085 HOH HOH A . F 6 HOH 86 2086 2086 HOH HOH A . F 6 HOH 87 2087 2087 HOH HOH A . F 6 HOH 88 2088 2088 HOH HOH A . F 6 HOH 89 2089 2089 HOH HOH A . F 6 HOH 90 2090 2090 HOH HOH A . F 6 HOH 91 2091 2091 HOH HOH A . F 6 HOH 92 2092 2092 HOH HOH A . F 6 HOH 93 2093 2093 HOH HOH A . F 6 HOH 94 2094 2094 HOH HOH A . F 6 HOH 95 2095 2095 HOH HOH A . F 6 HOH 96 2096 2096 HOH HOH A . F 6 HOH 97 2097 2097 HOH HOH A . F 6 HOH 98 2098 2098 HOH HOH A . F 6 HOH 99 2099 2099 HOH HOH A . F 6 HOH 100 2100 2100 HOH HOH A . F 6 HOH 101 2101 2101 HOH HOH A . F 6 HOH 102 2102 2102 HOH HOH A . F 6 HOH 103 2103 2103 HOH HOH A . F 6 HOH 104 2104 2104 HOH HOH A . F 6 HOH 105 2105 2105 HOH HOH A . F 6 HOH 106 2106 2106 HOH HOH A . F 6 HOH 107 2107 2107 HOH HOH A . F 6 HOH 108 2108 2108 HOH HOH A . F 6 HOH 109 2109 2109 HOH HOH A . F 6 HOH 110 2110 2110 HOH HOH A . F 6 HOH 111 2111 2111 HOH HOH A . F 6 HOH 112 2112 2112 HOH HOH A . F 6 HOH 113 2113 2113 HOH HOH A . F 6 HOH 114 2114 2114 HOH HOH A . F 6 HOH 115 2115 2115 HOH HOH A . F 6 HOH 116 2116 2116 HOH HOH A . F 6 HOH 117 2117 2117 HOH HOH A . F 6 HOH 118 2118 2118 HOH HOH A . F 6 HOH 119 2119 2119 HOH HOH A . F 6 HOH 120 2120 2120 HOH HOH A . F 6 HOH 121 2121 2121 HOH HOH A . F 6 HOH 122 2122 2122 HOH HOH A . F 6 HOH 123 2123 2123 HOH HOH A . F 6 HOH 124 2124 2124 HOH HOH A . F 6 HOH 125 2125 2125 HOH HOH A . F 6 HOH 126 2126 2126 HOH HOH A . F 6 HOH 127 2127 2127 HOH HOH A . F 6 HOH 128 2128 2128 HOH HOH A . F 6 HOH 129 2129 2129 HOH HOH A . F 6 HOH 130 2130 2130 HOH HOH A . F 6 HOH 131 2131 2131 HOH HOH A . F 6 HOH 132 2132 2132 HOH HOH A . F 6 HOH 133 2133 2133 HOH HOH A . F 6 HOH 134 2134 2134 HOH HOH A . F 6 HOH 135 2135 2135 HOH HOH A . F 6 HOH 136 2136 2136 HOH HOH A . F 6 HOH 137 2137 2137 HOH HOH A . F 6 HOH 138 2138 2138 HOH HOH A . F 6 HOH 139 2139 2139 HOH HOH A . F 6 HOH 140 2140 2140 HOH HOH A . F 6 HOH 141 2141 2141 HOH HOH A . F 6 HOH 142 2142 2142 HOH HOH A . F 6 HOH 143 2143 2143 HOH HOH A . F 6 HOH 144 2144 2144 HOH HOH A . F 6 HOH 145 2145 2145 HOH HOH A . F 6 HOH 146 2146 2146 HOH HOH A . F 6 HOH 147 2147 2147 HOH HOH A . F 6 HOH 148 2148 2148 HOH HOH A . F 6 HOH 149 2149 2149 HOH HOH A . F 6 HOH 150 2150 2150 HOH HOH A . F 6 HOH 151 2151 2151 HOH HOH A . F 6 HOH 152 2152 2152 HOH HOH A . F 6 HOH 153 2153 2153 HOH HOH A . F 6 HOH 154 2154 2154 HOH HOH A . F 6 HOH 155 2155 2155 HOH HOH A . F 6 HOH 156 2156 2156 HOH HOH A . F 6 HOH 157 2157 2157 HOH HOH A . F 6 HOH 158 2158 2158 HOH HOH A . F 6 HOH 159 2159 2159 HOH HOH A . F 6 HOH 160 2160 2160 HOH HOH A . F 6 HOH 161 2161 2161 HOH HOH A . F 6 HOH 162 2162 2162 HOH HOH A . F 6 HOH 163 2163 2163 HOH HOH A . F 6 HOH 164 2164 2164 HOH HOH A . F 6 HOH 165 2165 2165 HOH HOH A . F 6 HOH 166 2166 2166 HOH HOH A . F 6 HOH 167 2167 2167 HOH HOH A . F 6 HOH 168 2168 2168 HOH HOH A . F 6 HOH 169 2169 2169 HOH HOH A . F 6 HOH 170 2170 2170 HOH HOH A . F 6 HOH 171 2171 2171 HOH HOH A . F 6 HOH 172 2172 2172 HOH HOH A . F 6 HOH 173 2173 2173 HOH HOH A . F 6 HOH 174 2174 2174 HOH HOH A . F 6 HOH 175 2175 2175 HOH HOH A . F 6 HOH 176 2176 2176 HOH HOH A . F 6 HOH 177 2177 2177 HOH HOH A . F 6 HOH 178 2178 2178 HOH HOH A . F 6 HOH 179 2179 2179 HOH HOH A . F 6 HOH 180 2180 2180 HOH HOH A . F 6 HOH 181 2181 2181 HOH HOH A . F 6 HOH 182 2182 2182 HOH HOH A . F 6 HOH 183 2183 2183 HOH HOH A . F 6 HOH 184 2184 2184 HOH HOH A . F 6 HOH 185 2185 2185 HOH HOH A . F 6 HOH 186 2186 2186 HOH HOH A . F 6 HOH 187 2187 2187 HOH HOH A . F 6 HOH 188 2188 2188 HOH HOH A . F 6 HOH 189 2189 2189 HOH HOH A . F 6 HOH 190 2190 2190 HOH HOH A . F 6 HOH 191 2191 2191 HOH HOH A . F 6 HOH 192 2192 2192 HOH HOH A . F 6 HOH 193 2193 2193 HOH HOH A . F 6 HOH 194 2194 2194 HOH HOH A . F 6 HOH 195 2195 2195 HOH HOH A . F 6 HOH 196 2196 2196 HOH HOH A . F 6 HOH 197 2197 2197 HOH HOH A . F 6 HOH 198 2198 2198 HOH HOH A . F 6 HOH 199 2199 2199 HOH HOH A . F 6 HOH 200 2200 2200 HOH HOH A . F 6 HOH 201 2201 2201 HOH HOH A . F 6 HOH 202 2202 2202 HOH HOH A . F 6 HOH 203 2203 2203 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3370 ? 1 MORE -48.6 ? 1 'SSA (A^2)' 17700 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 -39.9207239320 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 61.3084121532 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2049 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2B ? B ADP . ? A ADP 302 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O ? F HOH . ? A HOH 2020 ? 1_555 110.5 ? 2 O2B ? B ADP . ? A ADP 302 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O ? F HOH . ? A HOH 2022 ? 1_555 163.3 ? 3 O ? F HOH . ? A HOH 2020 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O ? F HOH . ? A HOH 2022 ? 1_555 83.8 ? 4 O2B ? B ADP . ? A ADP 302 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O ? F HOH . ? A HOH 2104 ? 1_555 93.8 ? 5 O ? F HOH . ? A HOH 2020 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O ? F HOH . ? A HOH 2104 ? 1_555 98.8 ? 6 O ? F HOH . ? A HOH 2022 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O ? F HOH . ? A HOH 2104 ? 1_555 92.4 ? 7 O2B ? B ADP . ? A ADP 302 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 OG ? A SER 40 ? A SER 20 ? 1_555 91.2 ? 8 O ? F HOH . ? A HOH 2020 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 OG ? A SER 40 ? A SER 20 ? 1_555 108.3 ? 9 O ? F HOH . ? A HOH 2022 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 OG ? A SER 40 ? A SER 20 ? 1_555 75.6 ? 10 O ? F HOH . ? A HOH 2104 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 OG ? A SER 40 ? A SER 20 ? 1_555 148.6 ? 11 O2B ? B ADP . ? A ADP 302 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O ? F HOH . ? A HOH 2019 ? 1_555 79.7 ? 12 O ? F HOH . ? A HOH 2020 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O ? F HOH . ? A HOH 2019 ? 1_555 169.6 ? 13 O ? F HOH . ? A HOH 2022 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O ? F HOH . ? A HOH 2019 ? 1_555 86.5 ? 14 O ? F HOH . ? A HOH 2104 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O ? F HOH . ? A HOH 2019 ? 1_555 78.0 ? 15 OG ? A SER 40 ? A SER 20 ? 1_555 MG ? C MG . ? A MG 401 ? 1_555 O ? F HOH . ? A HOH 2019 ? 1_555 72.5 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2011-12-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -13.5576 10.2550 5.7779 -0.1080 0.1429 -0.1231 -0.0075 -0.0017 0.0000 1.6548 0.7616 2.9962 -0.9299 0.4168 0.7945 0.0474 0.0297 -0.0695 0.0051 -0.0140 0.0691 0.0959 0.2003 -0.0334 'X-RAY DIFFRACTION' 2 ? refined -18.8253 2.1017 21.2244 -0.0500 0.1347 -0.0607 0.0376 -0.0323 0.0251 0.8423 1.0966 -0.1557 0.1381 0.1547 -0.3547 -0.0195 0.0035 -0.0190 0.0555 0.0171 0.0497 0.0534 0.0230 0.0025 'X-RAY DIFFRACTION' 3 ? refined -26.6281 9.5963 28.1026 -0.1063 0.2271 -0.1405 0.0050 -0.0570 -0.0292 0.7721 0.0000 0.9607 0.0681 0.4744 0.1716 -0.0229 -0.0118 -0.0153 0.0110 -0.0169 0.0528 0.0200 0.0168 0.0398 'X-RAY DIFFRACTION' 4 ? refined -16.5727 14.8675 19.1833 -0.1025 0.1839 -0.1627 -0.0160 -0.0097 -0.0047 1.7520 1.0424 3.0003 -0.3683 -0.5136 0.4013 0.0753 -0.0873 -0.1596 0.0667 -0.0751 -0.0320 0.0054 0.0804 -0.0002 'X-RAY DIFFRACTION' 5 ? refined -33.9555 11.8259 7.6630 -0.1147 0.2443 -0.1284 0.0065 -0.0102 -0.0467 1.9423 0.0099 0.9903 -0.7444 -0.0975 -1.1841 0.0186 0.0111 -0.0194 0.0482 0.0380 0.1022 0.0390 -0.0550 -0.0566 'X-RAY DIFFRACTION' 6 ? refined -17.3392 20.7358 7.1922 -0.1135 0.1575 -0.1402 -0.0023 0.0118 -0.0048 0.6567 0.7422 3.2965 0.0263 -0.2211 0.1585 0.0583 0.1182 0.2252 0.0443 -0.0432 -0.0748 -0.2965 0.1720 -0.0151 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 3-40)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 41-53)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 54-72)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 73-131)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 132-157)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 158-212)' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BUSTER refinement 2.8.0 ? 1 XDS 'data reduction' . ? 2 XDS 'data scaling' . ? 3 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 64 ? ? 64.96 99.99 2 1 ARG A 97 ? ? 77.18 140.76 3 1 TYR A 98 ? ? -143.58 -149.64 4 1 GLU A 110 ? ? 70.95 -27.76 5 1 THR A 201 ? ? -96.01 -62.14 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2088 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.20 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 205 ? CG ? A LYS 225 CG 2 1 Y 1 A LYS 205 ? CD ? A LYS 225 CD 3 1 Y 1 A LYS 205 ? CE ? A LYS 225 CE 4 1 Y 1 A LYS 205 ? NZ ? A LYS 225 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -19 ? A MET 1 2 1 Y 1 A GLY -18 ? A GLY 2 3 1 Y 1 A SER -17 ? A SER 3 4 1 Y 1 A SER -16 ? A SER 4 5 1 Y 1 A HIS -15 ? A HIS 5 6 1 Y 1 A HIS -14 ? A HIS 6 7 1 Y 1 A HIS -13 ? A HIS 7 8 1 Y 1 A HIS -12 ? A HIS 8 9 1 Y 1 A HIS -11 ? A HIS 9 10 1 Y 1 A HIS -10 ? A HIS 10 11 1 Y 1 A SER -9 ? A SER 11 12 1 Y 1 A SER -8 ? A SER 12 13 1 Y 1 A GLY -7 ? A GLY 13 14 1 Y 1 A LEU -6 ? A LEU 14 15 1 Y 1 A VAL -5 ? A VAL 15 16 1 Y 1 A PRO -4 ? A PRO 16 17 1 Y 1 A ARG -3 ? A ARG 17 18 1 Y 1 A GLY -2 ? A GLY 18 19 1 Y 1 A SER -1 ? A SER 19 20 1 Y 1 A HIS 0 ? A HIS 20 21 1 Y 1 A MET 1 ? A MET 21 22 1 Y 1 A ALA 2 ? A ALA 22 23 1 Y 1 A ALA 33 ? A ALA 53 24 1 Y 1 A GLY 34 ? A GLY 54 25 1 Y 1 A SER 55 ? A SER 75 26 1 Y 1 A TYR 56 ? A TYR 76 27 1 Y 1 A LEU 57 ? A LEU 77 28 1 Y 1 A GLN 58 ? A GLN 78 29 1 Y 1 A LYS 59 ? A LYS 79 30 1 Y 1 A LYS 60 ? A LYS 80 31 1 Y 1 A SER 61 ? A SER 81 32 1 Y 1 A ASP 62 ? A ASP 82 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-5'-DIPHOSPHATE" ADP 3 'MAGNESIUM ION' MG 4 'N1-[(E)-4-DIHYDROXYPHOSPHONYL-BUT-2-ENYL]-THYMINE' TAE 5 'NITRATE ION' NO3 6 water HOH #