HEADER OXIDOREDUCTASE 09-NOV-10 2XXB TITLE PENTA-MUTANT OF THERMUS THERMOPHILUS LACTATE DEHYDROGENASE, COMPLEX TITLE 2 WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-LACTATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: L-LDH; COMPND 5 EC: 1.1.1.27; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTTHLDH12 KEYWDS OXIDOREDUCTASE, HYPERTHERMOPHILE EXPDTA X-RAY DIFFRACTION AUTHOR F.DIOP,N.COQUELLE,F.M.D.VELLIEUX REVDAT 4 20-DEC-23 2XXB 1 REMARK REVDAT 3 08-MAY-19 2XXB 1 REMARK REVDAT 2 28-FEB-18 2XXB 1 SOURCE REMARK REVDAT 1 17-NOV-10 2XXB 0 JRNL AUTH F.DIOP,N.COQUELLE,F.M.D.VELLIEUX JRNL TITL LACTATE DEHYDROGENASE FROM T. THERMOPHILUS, PENTA-MUTANT JRNL TITL 2 (COMPLEX WITH AMP) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 32759 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9687 - 4.6314 0.99 3482 184 0.1369 0.1681 REMARK 3 2 4.6314 - 3.6765 0.96 3270 172 0.1586 0.2255 REMARK 3 3 3.6765 - 3.2118 0.96 3214 169 0.2020 0.2927 REMARK 3 4 3.2118 - 2.9182 0.99 3290 173 0.2047 0.2660 REMARK 3 5 2.9182 - 2.7091 0.99 3285 173 0.2091 0.2831 REMARK 3 6 2.7091 - 2.5493 0.99 3257 172 0.2115 0.3067 REMARK 3 7 2.5493 - 2.4217 0.98 3257 171 0.1981 0.2916 REMARK 3 8 2.4217 - 2.3163 0.98 3237 170 0.2156 0.3165 REMARK 3 9 2.3163 - 2.2271 0.76 2515 133 0.4841 0.6989 REMARK 3 10 2.2271 - 2.1502 0.71 2314 121 0.3325 0.3900 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 27.94 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.81040 REMARK 3 B22 (A**2) : -4.16260 REMARK 3 B33 (A**2) : 0.35220 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4768 REMARK 3 ANGLE : 1.142 6512 REMARK 3 CHIRALITY : 0.071 765 REMARK 3 PLANARITY : 0.004 842 REMARK 3 DIHEDRAL : 17.326 1700 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 22:113) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5198 -31.7515 -14.3852 REMARK 3 T TENSOR REMARK 3 T11: 0.0273 T22: 0.1412 REMARK 3 T33: 0.0695 T12: -0.0190 REMARK 3 T13: 0.0035 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 0.1244 L22: 1.2107 REMARK 3 L33: 0.9911 L12: 0.1462 REMARK 3 L13: -0.0399 L23: -0.8041 REMARK 3 S TENSOR REMARK 3 S11: -0.0624 S12: -0.1426 S13: -0.0818 REMARK 3 S21: 0.1922 S22: -0.0504 S23: -0.1491 REMARK 3 S31: -0.1227 S32: 0.0913 S33: 0.1090 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 114:204) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9253 -14.2010 -18.1969 REMARK 3 T TENSOR REMARK 3 T11: 0.1369 T22: 0.0591 REMARK 3 T33: 0.0811 T12: -0.0889 REMARK 3 T13: -0.1066 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 0.1361 L22: 0.5984 REMARK 3 L33: 0.9604 L12: -0.0690 REMARK 3 L13: 0.0978 L23: -0.4957 REMARK 3 S TENSOR REMARK 3 S11: 0.0510 S12: 0.0121 S13: -0.0127 REMARK 3 S21: 0.3287 S22: -0.1767 S23: -0.1207 REMARK 3 S31: -0.3934 S32: 0.1563 S33: 0.2561 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 205:296) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0931 -10.6441 -24.5813 REMARK 3 T TENSOR REMARK 3 T11: 0.1153 T22: 0.0499 REMARK 3 T33: 0.0538 T12: -0.0438 REMARK 3 T13: -0.0341 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.1991 L22: 0.9647 REMARK 3 L33: 1.2017 L12: -0.0609 REMARK 3 L13: 0.2741 L23: -0.4835 REMARK 3 S TENSOR REMARK 3 S11: -0.0690 S12: -0.0353 S13: 0.0252 REMARK 3 S21: 0.2582 S22: -0.1411 S23: -0.1095 REMARK 3 S31: -0.3495 S32: 0.0340 S33: 0.1422 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 297:331) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9157 -1.4533 -15.1890 REMARK 3 T TENSOR REMARK 3 T11: 0.6011 T22: 0.0792 REMARK 3 T33: 0.1306 T12: -0.2062 REMARK 3 T13: -0.0294 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.4175 L22: 3.2355 REMARK 3 L33: 0.5742 L12: -0.3800 REMARK 3 L13: -0.1761 L23: -1.0303 REMARK 3 S TENSOR REMARK 3 S11: 0.1564 S12: -0.0865 S13: 0.1652 REMARK 3 S21: 1.2987 S22: -0.1613 S23: -0.0458 REMARK 3 S31: -0.4276 S32: 0.1242 S33: 0.0629 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 22:119) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9760 -33.1459 -21.0206 REMARK 3 T TENSOR REMARK 3 T11: 0.0145 T22: 0.1658 REMARK 3 T33: 0.0891 T12: -0.0303 REMARK 3 T13: 0.0109 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.3333 L22: 0.3228 REMARK 3 L33: 0.8567 L12: 0.1411 REMARK 3 L13: -0.4121 L23: 0.1010 REMARK 3 S TENSOR REMARK 3 S11: -0.0390 S12: 0.0665 S13: 0.1208 REMARK 3 S21: 0.0329 S22: 0.0128 S23: 0.0943 REMARK 3 S31: 0.0249 S32: -0.2353 S33: 0.0226 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 120:209D) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9088 -50.7436 -25.4835 REMARK 3 T TENSOR REMARK 3 T11: 0.0390 T22: 0.0814 REMARK 3 T33: 0.0440 T12: -0.0346 REMARK 3 T13: 0.0129 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.4508 L22: 0.6546 REMARK 3 L33: 0.5585 L12: 0.2916 REMARK 3 L13: -0.0632 L23: 0.0118 REMARK 3 S TENSOR REMARK 3 S11: 0.0298 S12: -0.0463 S13: 0.0920 REMARK 3 S21: -0.0451 S22: -0.0287 S23: -0.0180 REMARK 3 S31: 0.1490 S32: -0.1871 S33: -0.0055 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 210A:297) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0730 -52.7240 -24.7184 REMARK 3 T TENSOR REMARK 3 T11: 0.0449 T22: 0.0906 REMARK 3 T33: 0.0681 T12: -0.0277 REMARK 3 T13: -0.0028 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.4285 L22: 0.0301 REMARK 3 L33: 1.0488 L12: -0.0963 REMARK 3 L13: 0.0247 L23: -0.1011 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: 0.0104 S13: -0.0421 REMARK 3 S21: -0.0380 S22: -0.0729 S23: 0.0025 REMARK 3 S31: 0.1960 S32: 0.0802 S33: 0.0346 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 298:331) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3952 -62.6381 -21.8281 REMARK 3 T TENSOR REMARK 3 T11: 0.2151 T22: 0.0408 REMARK 3 T33: 0.1313 T12: -0.0853 REMARK 3 T13: -0.0438 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 0.3656 L22: 1.1381 REMARK 3 L33: 0.5712 L12: -0.3352 REMARK 3 L13: 0.0408 L23: 0.6466 REMARK 3 S TENSOR REMARK 3 S11: -0.0457 S12: -0.0732 S13: -0.1022 REMARK 3 S21: 0.5180 S22: -0.1265 S23: -0.0656 REMARK 3 S31: 0.1928 S32: -0.1095 S33: 0.1329 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XXB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1290046139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9334 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32767 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 48.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 7.290 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.02 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2V6M REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROPS, 2 MICROL PROTEIN AND 2 REMARK 280 MICROL PRECIPITANT. 0.1 M BICINE, 1 M LICL, 15% PEG 6000 PH 9.0, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.30500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.30500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.49500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.73500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.49500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.73500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.30500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.49500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.73500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.30500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.49500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.73500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -75.30500 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 79 TO TRP REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 151 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 279 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 299 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 313 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ARG 79 TO TRP REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ARG 151 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLU 279 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLU 299 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLU 313 TO ALA REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 HIS A 188 CG CE1 NE2 REMARK 480 GLU A 223 CG REMARK 480 GLU B 178 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 29 53.49 -103.11 REMARK 500 ALA A 73 -95.89 -145.99 REMARK 500 PRO A 156 150.74 -47.72 REMARK 500 HIS A 195 99.52 -66.90 REMARK 500 ARG A 216 -14.79 -177.63 REMARK 500 ARG A 218 53.82 -170.27 REMARK 500 ALA A 219 -64.15 -19.10 REMARK 500 LEU A 220 76.09 101.59 REMARK 500 TYR A 247 -34.41 -155.64 REMARK 500 ALA A 299 76.78 -115.52 REMARK 500 ALA A 326 -71.88 -63.21 REMARK 500 LEU A 329 -5.61 -142.07 REMARK 500 SER B 29 42.22 -107.20 REMARK 500 ALA B 73 -93.61 -158.14 REMARK 500 PRO B 75 97.65 -60.87 REMARK 500 ARG B 109 -55.13 -16.88 REMARK 500 ALA B 138 -30.07 -130.50 REMARK 500 ARG B 218 62.44 -163.41 REMARK 500 LYS B 243 -0.50 -141.34 REMARK 500 TYR B 247 -39.22 -166.50 REMARK 500 GLU B 283 71.85 46.73 REMARK 500 ALA B 299 61.70 -156.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 1332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 1332 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V7P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LACTATE DEHYDROGENASE FROM THERMUS REMARK 900 THERMOPHILUS HB8 (HOLO FORM) REMARK 900 RELATED ID: 2V6M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LACTATE DEHYDROGENASE FROM THERMUS REMARK 900 THERMOPHILUS HB8 (APO FORM) REMARK 900 RELATED ID: 2XXE RELATED DB: PDB REMARK 900 SINGLE POINT MUTANT OF THERMUS THERMOPHILUS LACTATE DEHYDROGENASE REMARK 900 RELATED ID: 2XXJ RELATED DB: PDB REMARK 900 PENTA MUTANT OF LACTATE DEHYDROGENASE FROM THERMUS THERMOPHILUS, REMARK 900 TERNARY COMPLEX DBREF 2XXB A 22 331 UNP Q5SJA1 LDH_THET8 1 310 DBREF 2XXB B 22 331 UNP Q5SJA1 LDH_THET8 1 310 SEQADV 2XXB TRP A 79 UNP Q5SJA1 ARG 58 ENGINEERED MUTATION SEQADV 2XXB ALA A 151 UNP Q5SJA1 ARG 128 ENGINEERED MUTATION SEQADV 2XXB ALA A 279 UNP Q5SJA1 GLU 260 ENGINEERED MUTATION SEQADV 2XXB ALA A 299 UNP Q5SJA1 GLU 279 ENGINEERED MUTATION SEQADV 2XXB ALA A 313 UNP Q5SJA1 GLU 292 ENGINEERED MUTATION SEQADV 2XXB TRP B 79 UNP Q5SJA1 ARG 58 ENGINEERED MUTATION SEQADV 2XXB ALA B 151 UNP Q5SJA1 ARG 128 ENGINEERED MUTATION SEQADV 2XXB ALA B 279 UNP Q5SJA1 GLU 260 ENGINEERED MUTATION SEQADV 2XXB ALA B 299 UNP Q5SJA1 GLU 279 ENGINEERED MUTATION SEQADV 2XXB ALA B 313 UNP Q5SJA1 GLU 292 ENGINEERED MUTATION SEQRES 1 A 310 MET LYS VAL GLY ILE VAL GLY SER GLY MET VAL GLY SER SEQRES 2 A 310 ALA THR ALA TYR ALA LEU ALA LEU LEU GLY VAL ALA ARG SEQRES 3 A 310 GLU VAL VAL LEU VAL ASP LEU ASP ARG LYS LEU ALA GLN SEQRES 4 A 310 ALA HIS ALA GLU ASP ILE LEU HIS ALA THR PRO PHE ALA SEQRES 5 A 310 HIS PRO VAL TRP VAL TRP ALA GLY SER TYR GLY ASP LEU SEQRES 6 A 310 GLU GLY ALA ARG ALA VAL VAL LEU ALA ALA GLY VAL ALA SEQRES 7 A 310 GLN ARG PRO GLY GLU THR ARG LEU GLN LEU LEU ASP ARG SEQRES 8 A 310 ASN ALA GLN VAL PHE ALA GLN VAL VAL PRO ARG VAL LEU SEQRES 9 A 310 GLU ALA ALA PRO GLU ALA VAL LEU LEU VAL ALA THR ASN SEQRES 10 A 310 PRO VAL ASP VAL MET THR GLN VAL ALA TYR ALA LEU SER SEQRES 11 A 310 GLY LEU PRO PRO GLY ARG VAL VAL GLY SER GLY THR ILE SEQRES 12 A 310 LEU ASP THR ALA ARG PHE ARG ALA LEU LEU ALA GLU TYR SEQRES 13 A 310 LEU ARG VAL ALA PRO GLN SER VAL HIS ALA TYR VAL LEU SEQRES 14 A 310 GLY GLU HIS GLY ASP SER GLU VAL LEU VAL TRP SER SER SEQRES 15 A 310 ALA GLN VAL GLY GLY VAL PRO LEU LEU GLU PHE ALA GLU SEQRES 16 A 310 ALA ARG GLY ARG ALA LEU SER PRO GLU ASP ARG ALA ARG SEQRES 17 A 310 ILE ASP GLU GLY VAL ARG ARG ALA ALA TYR ARG ILE ILE SEQRES 18 A 310 GLU GLY LYS GLY ALA THR TYR TYR GLY ILE GLY ALA GLY SEQRES 19 A 310 LEU ALA ARG LEU VAL ARG ALA ILE LEU THR ASP GLU LYS SEQRES 20 A 310 GLY VAL TYR THR VAL SER ALA PHE THR PRO GLU VAL ALA SEQRES 21 A 310 GLY VAL LEU GLU VAL SER LEU SER LEU PRO ARG ILE LEU SEQRES 22 A 310 GLY ALA GLY GLY VAL ALA GLY THR VAL TYR PRO SER LEU SEQRES 23 A 310 SER PRO GLU GLU ARG ALA ALA LEU ARG ARG SER ALA GLU SEQRES 24 A 310 ILE LEU LYS GLU ALA ALA PHE ALA LEU GLY PHE SEQRES 1 B 310 MET LYS VAL GLY ILE VAL GLY SER GLY MET VAL GLY SER SEQRES 2 B 310 ALA THR ALA TYR ALA LEU ALA LEU LEU GLY VAL ALA ARG SEQRES 3 B 310 GLU VAL VAL LEU VAL ASP LEU ASP ARG LYS LEU ALA GLN SEQRES 4 B 310 ALA HIS ALA GLU ASP ILE LEU HIS ALA THR PRO PHE ALA SEQRES 5 B 310 HIS PRO VAL TRP VAL TRP ALA GLY SER TYR GLY ASP LEU SEQRES 6 B 310 GLU GLY ALA ARG ALA VAL VAL LEU ALA ALA GLY VAL ALA SEQRES 7 B 310 GLN ARG PRO GLY GLU THR ARG LEU GLN LEU LEU ASP ARG SEQRES 8 B 310 ASN ALA GLN VAL PHE ALA GLN VAL VAL PRO ARG VAL LEU SEQRES 9 B 310 GLU ALA ALA PRO GLU ALA VAL LEU LEU VAL ALA THR ASN SEQRES 10 B 310 PRO VAL ASP VAL MET THR GLN VAL ALA TYR ALA LEU SER SEQRES 11 B 310 GLY LEU PRO PRO GLY ARG VAL VAL GLY SER GLY THR ILE SEQRES 12 B 310 LEU ASP THR ALA ARG PHE ARG ALA LEU LEU ALA GLU TYR SEQRES 13 B 310 LEU ARG VAL ALA PRO GLN SER VAL HIS ALA TYR VAL LEU SEQRES 14 B 310 GLY GLU HIS GLY ASP SER GLU VAL LEU VAL TRP SER SER SEQRES 15 B 310 ALA GLN VAL GLY GLY VAL PRO LEU LEU GLU PHE ALA GLU SEQRES 16 B 310 ALA ARG GLY ARG ALA LEU SER PRO GLU ASP ARG ALA ARG SEQRES 17 B 310 ILE ASP GLU GLY VAL ARG ARG ALA ALA TYR ARG ILE ILE SEQRES 18 B 310 GLU GLY LYS GLY ALA THR TYR TYR GLY ILE GLY ALA GLY SEQRES 19 B 310 LEU ALA ARG LEU VAL ARG ALA ILE LEU THR ASP GLU LYS SEQRES 20 B 310 GLY VAL TYR THR VAL SER ALA PHE THR PRO GLU VAL ALA SEQRES 21 B 310 GLY VAL LEU GLU VAL SER LEU SER LEU PRO ARG ILE LEU SEQRES 22 B 310 GLY ALA GLY GLY VAL ALA GLY THR VAL TYR PRO SER LEU SEQRES 23 B 310 SER PRO GLU GLU ARG ALA ALA LEU ARG ARG SER ALA GLU SEQRES 24 B 310 ILE LEU LYS GLU ALA ALA PHE ALA LEU GLY PHE HET AMP A1332 23 HET AMP B1332 23 HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 3 AMP 2(C10 H14 N5 O7 P) FORMUL 5 HOH *293(H2 O) HELIX 1 1 GLY A 30 LEU A 43 1 14 HELIX 2 2 ASP A 55 HIS A 68 1 14 HELIX 3 3 ALA A 69 ALA A 73 5 5 HELIX 4 4 SER A 84 GLU A 89 5 6 HELIX 5 5 THR A 108 ALA A 131 1 24 HELIX 6 6 PRO A 141 GLY A 154 1 14 HELIX 7 7 PRO A 156 GLY A 158 5 3 HELIX 8 8 THR A 165 LEU A 180 1 16 HELIX 9 9 ALA A 183 GLN A 185 5 3 HELIX 10 10 LEU A 210A ALA A 215 1 7 HELIX 11 11 SER A 221 ARG A 234 1 14 HELIX 12 12 ARG A 234 GLY A 244 1 11 HELIX 13 13 TYR A 247 THR A 263 1 17 HELIX 14 14 SER A 308 ALA A 328 1 21 HELIX 15 15 GLY B 30 GLY B 44 1 15 HELIX 16 16 ASP B 55 HIS B 68 1 14 HELIX 17 17 ALA B 69 ALA B 73 5 5 HELIX 18 18 SER B 84 GLU B 89 5 6 HELIX 19 19 THR B 108 ALA B 131 1 24 HELIX 20 20 PRO B 141 GLY B 154 1 14 HELIX 21 21 PRO B 156 GLY B 158 5 3 HELIX 22 22 THR B 165 ARG B 181 1 17 HELIX 23 23 ALA B 183 GLN B 185 5 3 HELIX 24 24 LEU B 210A ARG B 216 1 8 HELIX 25 25 SER B 221 ARG B 234 1 14 HELIX 26 26 ARG B 234 GLY B 244 1 11 HELIX 27 27 TYR B 247 ASP B 264 1 18 HELIX 28 28 SER B 308 LEU B 329 1 22 SHEET 1 AA 6 TRP A 77 ALA A 80 0 SHEET 2 AA 6 GLU A 48 VAL A 52 1 O VAL A 49 N TRP A 79 SHEET 3 AA 6 LYS A 23 VAL A 27 1 O VAL A 24 N VAL A 50 SHEET 4 AA 6 ALA A 91 LEU A 96 1 N ARG A 92 O LYS A 23 SHEET 5 AA 6 VAL A 134 VAL A 137 1 O VAL A 134 N VAL A 94 SHEET 6 AA 6 VAL A 160 GLY A 162 1 O VAL A 161 N VAL A 137 SHEET 1 AB 3 VAL A 187 HIS A 188 0 SHEET 2 AB 3 GLN A 207 VAL A 208 -1 O GLN A 207 N HIS A 188 SHEET 3 AB 3 VAL A 209C PRO A 209D-1 O VAL A 209C N VAL A 208 SHEET 1 AC 2 VAL A 191 LEU A 192 0 SHEET 2 AC 2 VAL A 200 LEU A 201 -1 O VAL A 200 N LEU A 192 SHEET 1 AD 3 GLY A 267 VAL A 278 0 SHEET 2 AD 3 VAL A 281 GLY A 294 -1 O VAL A 281 N VAL A 278 SHEET 3 AD 3 GLY A 297 THR A 302 -1 O GLY A 297 N GLY A 294 SHEET 1 BA 6 TRP B 77 ALA B 80 0 SHEET 2 BA 6 GLU B 48 VAL B 52 1 O VAL B 49 N TRP B 79 SHEET 3 BA 6 LYS B 23 VAL B 27 1 O VAL B 24 N VAL B 50 SHEET 4 BA 6 ALA B 91 LEU B 96 1 N ARG B 92 O LYS B 23 SHEET 5 BA 6 VAL B 134 VAL B 137 1 O VAL B 134 N VAL B 94 SHEET 6 BA 6 VAL B 160 GLY B 162 1 O VAL B 161 N VAL B 137 SHEET 1 BB 3 VAL B 187 HIS B 188 0 SHEET 2 BB 3 GLN B 207 VAL B 208 -1 O GLN B 207 N HIS B 188 SHEET 3 BB 3 VAL B 209C PRO B 209D-1 O VAL B 209C N VAL B 208 SHEET 1 BC 2 VAL B 191 LEU B 192 0 SHEET 2 BC 2 VAL B 200 LEU B 201 -1 O VAL B 200 N LEU B 192 SHEET 1 BD 3 GLY B 267 VAL B 278 0 SHEET 2 BD 3 VAL B 281 GLY B 294 -1 O VAL B 281 N VAL B 278 SHEET 3 BD 3 GLY B 297 THR B 302 -1 O GLY B 297 N GLY B 294 CISPEP 1 ASN A 140 PRO A 141 0 -7.06 CISPEP 2 ASN B 140 PRO B 141 0 -10.17 SITE 1 AC1 19 VAL A 27 GLY A 28 GLY A 30 MET A 31 SITE 2 AC1 19 VAL A 32 ASP A 53 LEU A 54 LEU A 58 SITE 3 AC1 19 TYR A 85 ALA A 98 GLY A 99 VAL A 119 SITE 4 AC1 19 VAL A 123 HOH A2135 HOH A2136 HOH A2137 SITE 5 AC1 19 HOH A2138 GLY B 106 GLN B 111 SITE 1 AC2 17 GLY B 30 MET B 31 VAL B 32 ASP B 53 SITE 2 AC2 17 LEU B 54 LEU B 58 TYR B 85 ALA B 98 SITE 3 AC2 17 GLY B 99 VAL B 123 HOH B2148 HOH B2149 SITE 4 AC2 17 HOH B2150 HOH B2151 HOH B2152 HOH B2153 SITE 5 AC2 17 HOH B2154 CRYST1 54.990 153.470 150.610 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018185 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006640 0.00000