HEADER REPLICATION 11-NOV-10 2XXQ TITLE A WIDESPREAD FAMILY OF BACTERIAL CELL WALL ASSEMBLY PROTEINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CPS2A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 98-481; COMPND 5 SYNONYM: INTEGRAL MEMBRANE REGULATORY PROTEIN CPS2A; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 373153; SOURCE 4 STRAIN: D39; SOURCE 5 VARIANT: SEROTYPE 2; SOURCE 6 ATCC: NCTC 7466; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS REPLICATION, PEPTIDOGLYCAN, LCP, LYTR EXPDTA X-RAY DIFFRACTION AUTHOR J.MARLES-WRIGHT,Y.KAWAI,R.EMMINS,S.ISHIKAWA,M.KUWANO,N.HEINZ, AUTHOR 2 R.M.CLEVERLEY,N.K.BUI,N.OGASAWARA,R.J.LEWIS,W.VOLLMER,R.A.DANIEL, AUTHOR 3 J.ERRINGTON REVDAT 4 20-DEC-23 2XXQ 1 REMARK REVDAT 3 28-MAR-12 2XXQ 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 HETSYN FORMUL SCALE1 SCALE2 REVDAT 3 3 1 SCALE3 ATOM ANISOU TER REVDAT 3 4 1 HETATM CONECT REVDAT 2 28-DEC-11 2XXQ 1 JRNL REVDAT 1 19-OCT-11 2XXQ 0 JRNL AUTH Y.KAWAI,J.MARLES-WRIGHT,R.M.CLEVERLEY,R.EMMINS,S.ISHIKAWA, JRNL AUTH 2 M.KUWANO,N.HEINZ,N.K.BUI,C.N.HOYLAND,N.OGASAWARA,R.J.LEWIS, JRNL AUTH 3 W.VOLLMER,R.A.DANIEL,J.ERRINGTON JRNL TITL A WIDESPREAD FAMILY OF BACTERIAL CELL WALL ASSEMBLY JRNL TITL 2 PROTEINS. JRNL REF EMBO J. V. 30 4931 2011 JRNL REFN ISSN 0261-4189 JRNL PMID 21964069 JRNL DOI 10.1038/EMBOJ.2011.358 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42348 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2260 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3061 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2886 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 374 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.037 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3017 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4094 ; 1.270 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 390 ; 5.480 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;37.145 ;25.923 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 519 ;11.271 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;16.210 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 481 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2249 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1881 ; 0.650 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3057 ; 1.212 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1136 ; 2.184 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1028 ; 3.686 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 213 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0246 -3.2170 -21.3661 REMARK 3 T TENSOR REMARK 3 T11: 0.0173 T22: 0.0205 REMARK 3 T33: 0.0643 T12: -0.0063 REMARK 3 T13: -0.0083 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 1.1902 L22: 2.8462 REMARK 3 L33: 3.8617 L12: -0.3721 REMARK 3 L13: 0.9163 L23: -1.6234 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: 0.0841 S13: 0.0578 REMARK 3 S21: 0.1739 S22: -0.1926 S23: -0.3388 REMARK 3 S31: -0.0666 S32: 0.1941 S33: 0.2127 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 216 A 482 REMARK 3 ORIGIN FOR THE GROUP (A): -5.7907 30.5431 -28.5512 REMARK 3 T TENSOR REMARK 3 T11: 0.0152 T22: 0.0183 REMARK 3 T33: 0.0236 T12: -0.0151 REMARK 3 T13: 0.0088 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.6778 L22: 0.6591 REMARK 3 L33: 0.9173 L12: -0.3993 REMARK 3 L13: -0.4221 L23: 0.1915 REMARK 3 S TENSOR REMARK 3 S11: -0.0403 S12: -0.0018 S13: 0.0261 REMARK 3 S21: 0.0070 S22: 0.0271 S23: -0.0415 REMARK 3 S31: 0.0018 S32: 0.0160 S33: 0.0132 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2XXQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1290046208. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : DCM REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44731 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 43.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.10 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XXP REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.6, 8 % PEG REMARK 280 W/V 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.89500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.75000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.84250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.75000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.94750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.75000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.75000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 122.84250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.75000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.75000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.94750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.89500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 267 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 97 REMARK 465 GLY A 98 REMARK 465 LEU A 99 REMARK 465 THR A 100 REMARK 465 ASN A 101 REMARK 465 ARG A 102 REMARK 465 LEU A 103 REMARK 465 ASN A 104 REMARK 465 ALA A 105 REMARK 465 THR A 106 REMARK 465 SER A 107 REMARK 465 ASN A 108 REMARK 465 TYR A 109 REMARK 465 LEU A 483 REMARK 465 ALA A 484 REMARK 465 ALA A 485 REMARK 465 ALA A 486 REMARK 465 LEU A 487 REMARK 465 GLU A 488 REMARK 465 HIS A 489 REMARK 465 HIS A 490 REMARK 465 HIS A 491 REMARK 465 HIS A 492 REMARK 465 HIS A 493 REMARK 465 HIS A 494 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 125 CD OE1 OE2 REMARK 480 LYS A 180 CD CE NZ REMARK 480 LYS A 213 CG CD CE NZ REMARK 480 LYS A 214 CB CG CD CE NZ REMARK 480 ASP A 293 CG OD1 OD2 REMARK 480 GLU A 393 OE1 OE2 REMARK 480 GLU A 479 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 125 CG GLU A 125 CD 0.160 REMARK 500 GLU A 393 CD GLU A 393 OE1 0.272 REMARK 500 GLU A 393 CD GLU A 393 OE2 -0.311 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 214 N - CA - CB ANGL. DEV. = 15.8 DEGREES REMARK 500 LYS A 214 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 ARG A 255 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 GLU A 393 CG - CD - OE1 ANGL. DEV. = -15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 275 -116.66 65.66 REMARK 500 HIS A 340 59.13 37.49 REMARK 500 ARG A 364 -39.43 -137.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1483 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1484 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1485 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1486 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1487 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1488 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZTP A 1489 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XXP RELATED DB: PDB REMARK 900 A WIDESPREAD FAMILY OF BACTERIAL CELL WALL ASSEMBLY PROTEINS DBREF 2XXQ A 98 481 UNP Q9ZII9 Q9ZII9_STRP2 98 481 SEQADV 2XXQ MET A 97 UNP Q9ZII9 EXPRESSION TAG SEQADV 2XXQ LYS A 482 UNP Q9ZII9 EXPRESSION TAG SEQADV 2XXQ LEU A 483 UNP Q9ZII9 EXPRESSION TAG SEQADV 2XXQ ALA A 484 UNP Q9ZII9 EXPRESSION TAG SEQADV 2XXQ ALA A 485 UNP Q9ZII9 EXPRESSION TAG SEQADV 2XXQ ALA A 486 UNP Q9ZII9 EXPRESSION TAG SEQADV 2XXQ LEU A 487 UNP Q9ZII9 EXPRESSION TAG SEQADV 2XXQ GLU A 488 UNP Q9ZII9 EXPRESSION TAG SEQADV 2XXQ HIS A 489 UNP Q9ZII9 EXPRESSION TAG SEQADV 2XXQ HIS A 490 UNP Q9ZII9 EXPRESSION TAG SEQADV 2XXQ HIS A 491 UNP Q9ZII9 EXPRESSION TAG SEQADV 2XXQ HIS A 492 UNP Q9ZII9 EXPRESSION TAG SEQADV 2XXQ HIS A 493 UNP Q9ZII9 EXPRESSION TAG SEQADV 2XXQ HIS A 494 UNP Q9ZII9 EXPRESSION TAG SEQADV 2XXQ ALA A 267 UNP Q9ZII9 ARG 267 ENGINEERED MUTATION SEQRES 1 A 398 MET GLY LEU THR ASN ARG LEU ASN ALA THR SER ASN TYR SEQRES 2 A 398 SER GLU TYR SER LEU SER VAL ALA VAL LEU ALA ASP SER SEQRES 3 A 398 GLU ILE GLU ASN VAL THR GLN LEU THR SER VAL THR ALA SEQRES 4 A 398 PRO THR GLY THR ASP ASN GLU ASN ILE GLN LYS LEU LEU SEQRES 5 A 398 ALA ASP ILE LYS SER SER GLN ASN THR ASP LEU THR VAL SEQRES 6 A 398 ASN GLN SER SER SER TYR LEU ALA ALA TYR LYS SER LEU SEQRES 7 A 398 ILE ALA GLY GLU THR LYS ALA ILE VAL LEU ASN SER VAL SEQRES 8 A 398 PHE GLU ASN ILE ILE GLU LEU GLU TYR PRO ASP TYR ALA SEQRES 9 A 398 SER LYS ILE LYS LYS ILE TYR THR LYS GLY PHE THR LYS SEQRES 10 A 398 LYS VAL GLU ALA PRO LYS THR SER LYS ASN GLN SER PHE SEQRES 11 A 398 ASN ILE TYR VAL SER GLY ILE ASP THR TYR GLY PRO ILE SEQRES 12 A 398 SER SER VAL SER ARG SER ASP VAL ASN ILE LEU MET THR SEQRES 13 A 398 VAL ASN ARG ASP THR LYS LYS ILE LEU LEU THR THR THR SEQRES 14 A 398 PRO ALA ASP ALA TYR VAL PRO ILE ALA ASP GLY GLY ASN SEQRES 15 A 398 ASN GLN LYS ASP LYS LEU THR HIS ALA GLY ILE TYR GLY SEQRES 16 A 398 VAL ASP SER SER ILE HIS THR LEU GLU ASN LEU TYR GLY SEQRES 17 A 398 VAL ASP ILE ASN TYR TYR VAL ARG LEU ASN PHE THR SER SEQRES 18 A 398 PHE LEU LYS MET ILE ASP LEU LEU GLY GLY VAL ASP VAL SEQRES 19 A 398 HIS ASN ASP GLN GLU PHE SER ALA LEU HIS GLY LYS PHE SEQRES 20 A 398 HIS PHE PRO VAL GLY ASN VAL HIS LEU ASP SER GLU GLN SEQRES 21 A 398 ALA LEU GLY PHE VAL ARG GLU ARG TYR SER LEU ALA ASP SEQRES 22 A 398 GLY ASP ARG ASP ARG GLY ARG ASN GLN GLN LYS VAL ILE SEQRES 23 A 398 VAL ALA ILE LEU GLN LYS LEU THR SER THR GLU ALA LEU SEQRES 24 A 398 LYS ASN TYR SER THR ILE ILE ASN SER LEU GLN ASP SER SEQRES 25 A 398 ILE GLN THR ASN VAL PRO LEU GLU THR MET ILE ASN LEU SEQRES 26 A 398 VAL ASN ALA GLN LEU GLU SER GLY GLY ASN TYR LYS VAL SEQRES 27 A 398 ASN SER GLN ASP LEU LYS GLY THR GLY ARG MET ASP LEU SEQRES 28 A 398 PRO SER TYR ALA MET PRO ASP SER ASN LEU TYR VAL MET SEQRES 29 A 398 GLU ILE ASP ASP SER SER LEU ALA VAL VAL LYS ALA ALA SEQRES 30 A 398 ILE GLN ASP VAL MET GLU GLY ARG LYS LEU ALA ALA ALA SEQRES 31 A 398 LEU GLU HIS HIS HIS HIS HIS HIS HET EDO A1483 4 HET ACT A1484 4 HET EDO A1485 4 HET EDO A1486 4 HET EDO A1487 4 HET EDO A1488 4 HET ZTP A1489 49 HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM ZTP (2Z,6Z,10Z,14Z,18Z,22Z,26Z)-3,7,11,15,19,23,27,31- HETNAM 2 ZTP OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAEN-1- HETNAM 3 ZTP YL TRIHYDROGEN DIPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 5(C2 H6 O2) FORMUL 3 ACT C2 H3 O2 1- FORMUL 8 ZTP C40 H68 O7 P2 FORMUL 9 HOH *374(H2 O) HELIX 1 1 ASN A 126 LEU A 130 5 5 HELIX 2 2 ASP A 140 ASN A 156 1 17 HELIX 3 3 SER A 166 ALA A 176 1 11 HELIX 4 4 SER A 186 TYR A 196 1 11 HELIX 5 5 ASP A 198 LYS A 202 1 5 HELIX 6 6 ALA A 274 ASN A 278 5 5 HELIX 7 7 HIS A 286 GLY A 291 1 6 HELIX 8 8 GLY A 291 GLY A 304 1 14 HELIX 9 9 PHE A 315 GLY A 326 1 12 HELIX 10 10 ASP A 353 GLU A 363 1 11 HELIX 11 11 ASP A 369 THR A 390 1 22 HELIX 12 12 SER A 391 ASN A 397 1 7 HELIX 13 13 ASN A 397 GLN A 406 1 10 HELIX 14 14 PRO A 414 GLY A 429 1 16 HELIX 15 15 ASP A 463 GLY A 480 1 18 SHEET 1 AA 3 ILE A 182 ASN A 185 0 SHEET 2 AA 3 GLU A 111 LEU A 119 -1 O SER A 115 N LEU A 184 SHEET 3 AA 3 ILE A 203 THR A 212 -1 O LYS A 204 N VAL A 118 SHEET 1 AB 2 SER A 132 ALA A 135 0 SHEET 2 AB 2 THR A 160 GLN A 163 1 O THR A 160 N VAL A 133 SHEET 1 AC 6 GLN A 410 THR A 411 0 SHEET 2 AC 6 TYR A 309 ASN A 314 -1 O ARG A 312 N GLN A 410 SHEET 3 AC 6 SER A 225 ILE A 233 1 O ASN A 227 N TYR A 309 SHEET 4 AC 6 SER A 245 ASN A 254 -1 N ASP A 246 O GLY A 232 SHEET 5 AC 6 LYS A 259 THR A 264 -1 O LYS A 259 N ASN A 254 SHEET 6 AC 6 LYS A 433 ASP A 438 1 O LYS A 433 N ILE A 260 SHEET 1 AD 4 GLN A 280 LYS A 283 0 SHEET 2 AD 4 ALA A 269 ILE A 273 -1 O VAL A 271 N ASP A 282 SHEET 3 AD 4 VAL A 459 ILE A 462 1 O MET A 460 N TYR A 270 SHEET 4 AD 4 GLY A 441 ARG A 444 -1 O THR A 442 N GLU A 461 SHEET 1 AE 2 VAL A 328 ASN A 332 0 SHEET 2 AE 2 GLY A 348 LEU A 352 -1 O GLY A 348 N ASN A 332 SHEET 1 AF 2 PHE A 336 ALA A 338 0 SHEET 2 AF 2 PHE A 343 PHE A 345 -1 O PHE A 343 N ALA A 338 SITE 1 AC1 3 TYR A 432 HOH A2368 HOH A2369 SITE 1 AC2 6 ARG A 364 GLU A 416 ILE A 419 ASN A 420 SITE 2 AC2 6 TYR A 458 HOH A2306 SITE 1 AC3 5 GLY A 138 THR A 139 ASP A 140 ASN A 141 SITE 2 AC3 5 GLU A 142 SITE 1 AC4 4 GLN A 437 ASP A 438 SER A 466 HOH A2370 SITE 1 AC5 3 LYS A 283 HIS A 286 HOH A2371 SITE 1 AC6 7 ASP A 333 GLN A 334 ASP A 373 ARG A 376 SITE 2 AC6 7 ASN A 377 LYS A 380 HOH A2262 SITE 1 AC7 19 ILE A 228 ASP A 234 ARG A 244 ASP A 246 SITE 2 AC7 19 MET A 251 LEU A 313 ASN A 314 PHE A 315 SITE 3 AC7 19 ARG A 362 ARG A 374 GLN A 378 ILE A 385 SITE 4 AC7 19 LEU A 389 THR A 390 MET A 418 LEU A 421 SITE 5 AC7 19 TYR A 432 HOH A2372 HOH A2373 CRYST1 73.500 73.500 163.790 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013605 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013605 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006105 0.00000