HEADER TRANSFERASE 23-NOV-10 2XZ7 TITLE CRYSTAL STRUCTURE OF THE PHOSPHOENOLPYRUVATE-BINDING DOMAIN OF ENZYME TITLE 2 I IN COMPLEX WITH PHOSPHOENOLPYRUVATE FROM THE THERMOANAEROBACTER TITLE 3 TENGCONGENSIS PEP-SUGAR PHOSPHOTRANSFERASE SYSTEM (PTS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE-PROTEIN KINASE (PTS SYSTEM EI COMPONENT COMPND 3 IN BACTERIA); COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: PHOSPHOENOLPYRUVATE-BINDING DOMAIN, RESIDUES 251-573; COMPND 6 EC: 2.7.3.9; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: COFACTOR-PHOSPHOENOLPYRUVATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOANAEROBACTER TENGCONGENSIS; SOURCE 3 ORGANISM_TAXID: 119072; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA (DE3) KEYWDS THERMOPHILIC, PEP-UTILISING ENZYME, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.M.WALTERSPERGER,A.E.OBERHOLZER,P.SCHNEIDER,U.BAUMANN,B.ERNI REVDAT 2 20-DEC-23 2XZ7 1 REMARK LINK REVDAT 1 15-JUN-11 2XZ7 0 JRNL AUTH V.NAVDAEVA,A.ZURBRIGGEN,S.M.WALTERSPERGER,P.SCHNEIDER, JRNL AUTH 2 A.E.OBERHOLZER,P.BAHLER,C.BACHLER,A.GRIEDER,U.BAUMANN,B.ERNI JRNL TITL PHOSPHOENOLPYRUVATE: SUGAR PHOSPHOTRANSFERASE SYSTEM FROM JRNL TITL 2 THE HYPERTHERMOPHILIC THERMOANAEROBACTER TENGCONGENSIS. JRNL REF BIOCHEMISTRY V. 50 1184 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21250658 JRNL DOI 10.1021/BI101721F REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 58067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.9035 - 5.0450 0.93 2621 127 0.1473 0.1815 REMARK 3 2 5.0450 - 4.0046 0.97 2714 139 0.1241 0.1244 REMARK 3 3 4.0046 - 3.4984 0.89 2507 135 0.1372 0.1347 REMARK 3 4 3.4984 - 3.1786 0.95 2626 143 0.1502 0.1688 REMARK 3 5 3.1786 - 2.9508 0.97 2728 146 0.1665 0.2058 REMARK 3 6 2.9508 - 2.7768 0.98 2744 145 0.1613 0.1649 REMARK 3 7 2.7768 - 2.6377 0.97 2732 143 0.1696 0.1918 REMARK 3 8 2.6377 - 2.5229 0.89 2506 135 0.1746 0.2466 REMARK 3 9 2.5229 - 2.4258 0.94 2639 134 0.1608 0.2243 REMARK 3 10 2.4258 - 2.3421 0.96 2679 149 0.1577 0.2053 REMARK 3 11 2.3421 - 2.2688 0.97 2739 145 0.1612 0.1980 REMARK 3 12 2.2688 - 2.2040 0.97 2722 138 0.1878 0.2035 REMARK 3 13 2.2040 - 2.1459 0.98 2704 145 0.1728 0.2134 REMARK 3 14 2.1459 - 2.0936 0.98 2789 143 0.1707 0.2209 REMARK 3 15 2.0936 - 2.0460 0.97 2641 138 0.1765 0.2210 REMARK 3 16 2.0460 - 2.0024 0.91 2588 140 0.1839 0.2246 REMARK 3 17 2.0024 - 1.9624 0.91 2539 128 0.2024 0.2719 REMARK 3 18 1.9624 - 1.9254 0.95 2702 135 0.2144 0.2279 REMARK 3 19 1.9254 - 1.8910 0.96 2697 146 0.2407 0.2284 REMARK 3 20 1.8910 - 1.8589 0.96 2686 144 0.2502 0.3175 REMARK 3 21 1.8589 - 1.8289 0.66 1873 93 0.2506 0.2750 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 36.69 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.98680 REMARK 3 B22 (A**2) : 1.57310 REMARK 3 B33 (A**2) : 4.41370 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2654 REMARK 3 ANGLE : 0.762 3592 REMARK 3 CHIRALITY : 0.052 407 REMARK 3 PLANARITY : 0.003 466 REMARK 3 DIHEDRAL : 13.054 1060 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 249:258) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6498 25.5174 10.7915 REMARK 3 T TENSOR REMARK 3 T11: 0.1700 T22: 0.2934 REMARK 3 T33: 0.3346 T12: 0.0404 REMARK 3 T13: -0.0208 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 0.1427 L22: 1.2203 REMARK 3 L33: 1.9598 L12: 0.4084 REMARK 3 L13: 0.0606 L23: 0.0901 REMARK 3 S TENSOR REMARK 3 S11: 0.1319 S12: 0.4651 S13: 0.0941 REMARK 3 S21: -0.1819 S22: -0.3276 S23: 0.2817 REMARK 3 S31: 0.0030 S32: -0.2588 S33: 0.1406 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 259:344) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9143 4.5484 24.0882 REMARK 3 T TENSOR REMARK 3 T11: 0.1186 T22: 0.1661 REMARK 3 T33: 0.1444 T12: 0.0147 REMARK 3 T13: -0.0110 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 0.4907 L22: 1.3739 REMARK 3 L33: 0.5261 L12: -0.1215 REMARK 3 L13: 0.0124 L23: -0.6834 REMARK 3 S TENSOR REMARK 3 S11: 0.0618 S12: -0.0573 S13: 0.0289 REMARK 3 S21: 0.0380 S22: -0.0345 S23: 0.1868 REMARK 3 S31: -0.0389 S32: -0.0837 S33: -0.0310 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 345:462) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1937 -7.2713 20.7197 REMARK 3 T TENSOR REMARK 3 T11: 0.0909 T22: 0.0935 REMARK 3 T33: 0.1163 T12: 0.0038 REMARK 3 T13: -0.0110 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 0.7912 L22: 0.6403 REMARK 3 L33: 0.5011 L12: 0.0597 REMARK 3 L13: -0.2166 L23: -0.2702 REMARK 3 S TENSOR REMARK 3 S11: 0.0652 S12: 0.0582 S13: -0.1225 REMARK 3 S21: -0.0201 S22: -0.0651 S23: 0.0895 REMARK 3 S31: 0.0148 S32: -0.0479 S33: 0.0061 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 463:498) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7309 7.2897 15.1633 REMARK 3 T TENSOR REMARK 3 T11: 0.1384 T22: 0.1393 REMARK 3 T33: 0.1052 T12: 0.0275 REMARK 3 T13: -0.0034 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.0824 L22: 0.6272 REMARK 3 L33: 0.8939 L12: 0.2345 REMARK 3 L13: 0.8895 L23: 0.4405 REMARK 3 S TENSOR REMARK 3 S11: 0.0459 S12: -0.0317 S13: 0.1551 REMARK 3 S21: 0.0600 S22: -0.1585 S23: 0.0875 REMARK 3 S31: 0.1278 S32: -0.1187 S33: 0.0454 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 499:549) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6398 16.0569 8.9258 REMARK 3 T TENSOR REMARK 3 T11: 0.2053 T22: 0.1593 REMARK 3 T33: 0.1597 T12: 0.0616 REMARK 3 T13: 0.0008 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.4686 L22: 0.2754 REMARK 3 L33: 0.3078 L12: -0.0490 REMARK 3 L13: 0.1269 L23: -0.0482 REMARK 3 S TENSOR REMARK 3 S11: 0.0646 S12: 0.0652 S13: 0.2125 REMARK 3 S21: -0.2095 S22: -0.1301 S23: -0.0472 REMARK 3 S31: -0.1168 S32: -0.0172 S33: 0.0567 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 550:572) REMARK 3 ORIGIN FOR THE GROUP (A): 38.8917 21.2935 7.6164 REMARK 3 T TENSOR REMARK 3 T11: 0.3108 T22: 0.1725 REMARK 3 T33: 0.3634 T12: -0.0081 REMARK 3 T13: 0.0068 T23: 0.0638 REMARK 3 L TENSOR REMARK 3 L11: 3.7021 L22: 1.1643 REMARK 3 L33: 2.6051 L12: -1.6982 REMARK 3 L13: 1.3897 L23: -1.5128 REMARK 3 S TENSOR REMARK 3 S11: -0.0643 S12: 0.3704 S13: 0.8900 REMARK 3 S21: -0.0528 S22: -0.2063 S23: -0.6987 REMARK 3 S31: -0.4410 S32: 0.3664 S33: 0.2540 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XZ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1290046331. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58115 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.050 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2BG5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.74950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.06250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.74950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.06250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 83.49900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2068 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2274 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 573 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2147 O HOH A 2148 2.04 REMARK 500 O HOH A 2173 O HOH A 2197 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 346 74.15 69.63 REMARK 500 ALA A 359 -126.71 54.40 REMARK 500 GLU A 431 -22.10 -143.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2101 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A2138 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A2141 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A2206 DISTANCE = 6.18 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A6081 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 431 OE1 REMARK 620 2 ASP A 455 OD2 91.4 REMARK 620 3 HOH A2080 O 71.7 139.6 REMARK 620 4 HOH A2272 O 84.4 65.6 76.2 REMARK 620 5 PEP A6080 O1 95.8 88.9 128.1 154.6 REMARK 620 6 PEP A6080 O2 129.1 133.0 82.3 131.2 67.1 REMARK 620 7 PEP A6080 O1P 167.7 85.6 103.2 83.5 96.0 59.4 REMARK 620 N 1 2 3 4 5 6 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 9-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 10-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEP A 6080 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 6081 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XZ9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE FROM THE PHOSPHOENOLPYRUVATE- BINDING DOMAIN OF REMARK 900 ENZYME I IN COMPLEX WITH PYRUVATE FROM THE THERMOANAEROBACTER REMARK 900 TENGCONGENSIS PEP-SUGAR PHOSPHOTRANSFERASE SYSTEM (PTS) REMARK 900 RELATED ID: 2BG5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PHOSPHOENOLPYRUVATE- BINDING ENZYME I- REMARK 900 DOMAIN FROM THE THERMOANAEROBACTER TENGCONGENSIS PEP: SUGAR REMARK 900 PHOSPHOTRANSFERASE SYSTEM (PTS) DBREF 2XZ7 A 251 573 UNP Q8R7R4 Q8R7R4_THETN 251 573 SEQADV 2XZ7 HIS A 249 UNP Q8R7R4 EXPRESSION TAG SEQADV 2XZ7 MET A 250 UNP Q8R7R4 EXPRESSION TAG SEQRES 1 A 325 HIS MET GLU GLY LEU LYS GLN LEU LYS ASP LEU PRO ALA SEQRES 2 A 325 GLU THR PRO ASP GLY LYS LYS VAL MET LEU ALA ALA ASN SEQRES 3 A 325 ILE GLY THR PRO LYS ASP VAL ALA SER ALA LEU ALA ASN SEQRES 4 A 325 GLY ALA GLU GLY VAL GLY LEU PHE ARG THR GLU PHE LEU SEQRES 5 A 325 TYR MET ASP ARG ASN SER LEU PRO SER GLU GLU GLU GLN SEQRES 6 A 325 PHE GLU ALA TYR LYS GLU VAL VAL GLU LYS MET GLY GLY SEQRES 7 A 325 ARG PRO VAL THR ILE ARG THR LEU ASP ILE GLY GLY ASP SEQRES 8 A 325 LYS GLU LEU PRO TYR LEU ASP MET PRO LYS GLU MET ASN SEQRES 9 A 325 PRO PHE LEU GLY TYR ARG ALA ILE ARG LEU CYS LEU ASP SEQRES 10 A 325 ARG PRO ASP ILE PHE LYS THR GLN LEU ARG ALA ILE LEU SEQRES 11 A 325 ARG ALA SER ALA TYR GLY ASN VAL GLN ILE MET TYR PRO SEQRES 12 A 325 MET ILE SER SER VAL GLU GLU VAL ARG LYS ALA ASN SER SEQRES 13 A 325 ILE LEU GLU GLU VAL LYS ALA GLU LEU ASP ARG GLU GLY SEQRES 14 A 325 VAL LYS TYR ASP LYS GLU ILE LYS VAL GLY ILE MET VAL SEQRES 15 A 325 GLU ILE PRO SER ALA ALA VAL THR ALA ASP ILE LEU ALA SEQRES 16 A 325 LYS GLU VAL ASP PHE PHE SER ILE GLY THR ASN ASP LEU SEQRES 17 A 325 THR GLN TYR THR LEU ALA VAL ASP ARG MET ASN GLU HIS SEQRES 18 A 325 VAL LYS GLU TYR TYR GLN PRO PHE HIS PRO ALA ILE LEU SEQRES 19 A 325 ARG LEU VAL LYS MET VAL ILE ASP ALA ALA HIS LYS GLU SEQRES 20 A 325 GLY LYS PHE ALA ALA MET CYS GLY GLU MET ALA GLY ASP SEQRES 21 A 325 PRO LEU ALA ALA VAL ILE LEU LEU GLY LEU GLY LEU ASP SEQRES 22 A 325 GLU PHE SER MET SER ALA THR SER ILE PRO GLU ILE LYS SEQRES 23 A 325 ASN ILE ILE ARG ASN VAL GLU TYR GLU LYS ALA LYS GLU SEQRES 24 A 325 ILE ALA GLU LYS ALA LEU ASN MET SER GLU ALA ARG GLU SEQRES 25 A 325 ILE GLU LYS MET MET LYS ASP VAL ILE LYS ASP ILE GLY HET PEP A6080 10 HET MG A6081 1 HETNAM PEP PHOSPHOENOLPYRUVATE HETNAM MG MAGNESIUM ION FORMUL 2 PEP C3 H5 O6 P FORMUL 3 MG MG 2+ FORMUL 4 HOH *371(H2 O) HELIX 1 1 GLY A 252 LYS A 257 1 6 HELIX 2 2 THR A 277 LYS A 279 5 3 HELIX 3 3 ASP A 280 ASN A 287 1 8 HELIX 4 4 GLU A 298 TYR A 301 5 4 HELIX 5 5 SER A 309 MET A 324 1 16 HELIX 6 6 ASN A 352 GLY A 356 5 5 HELIX 7 7 ALA A 359 ARG A 366 1 8 HELIX 8 8 ARG A 366 SER A 381 1 16 HELIX 9 9 ALA A 382 GLY A 384 5 3 HELIX 10 10 SER A 395 GLY A 417 1 23 HELIX 11 11 ILE A 432 THR A 438 1 7 HELIX 12 12 THR A 438 LYS A 444 1 7 HELIX 13 13 GLY A 452 ALA A 462 1 11 HELIX 14 14 ASN A 467 TYR A 474 5 8 HELIX 15 15 HIS A 478 GLU A 495 1 18 HELIX 16 16 GLY A 503 GLY A 507 5 5 HELIX 17 17 ASP A 508 GLY A 519 1 12 HELIX 18 18 SER A 526 THR A 528 5 3 HELIX 19 19 SER A 529 ASN A 539 1 11 HELIX 20 20 GLU A 541 ASN A 554 1 14 HELIX 21 21 GLU A 557 ILE A 572 1 16 SHEET 1 AA10 ALA A 261 GLU A 262 0 SHEET 2 AA10 LYS A 268 ILE A 275 -1 O VAL A 269 N ALA A 261 SHEET 3 AA10 VAL A 292 ARG A 296 1 N GLY A 293 O ALA A 273 SHEET 4 AA10 VAL A 329 ARG A 332 1 O THR A 330 N PHE A 295 SHEET 5 AA10 VAL A 386 TYR A 390 1 O GLN A 387 N ILE A 331 SHEET 6 AA10 LYS A 425 VAL A 430 1 O LYS A 425 N ILE A 388 SHEET 7 AA10 PHE A 448 ILE A 451 1 O PHE A 448 N ILE A 428 SHEET 8 AA10 PHE A 498 MET A 501 1 O PHE A 498 N PHE A 449 SHEET 9 AA10 GLU A 522 MET A 525 1 O GLU A 522 N MET A 501 SHEET 10 AA10 ALA A 261 GLU A 262 0 LINK OE1 GLU A 431 MG MG A6081 1555 1555 2.41 LINK OD2 ASP A 455 MG MG A6081 1555 1555 2.38 LINK O HOH A2080 MG MG A6081 1555 1555 2.79 LINK O HOH A2272 MG MG A6081 1555 1555 2.68 LINK O1 PEP A6080 MG MG A6081 1555 1555 2.51 LINK O2 PEP A6080 MG MG A6081 1555 1555 2.57 LINK O1P PEP A6080 MG MG A6081 1555 1555 2.53 SITE 1 AC1 17 LEU A 294 ARG A 296 ARG A 332 MET A 429 SITE 2 AC1 17 GLU A 431 GLY A 452 THR A 453 ASN A 454 SITE 3 AC1 17 ASP A 455 ARG A 465 CYS A 502 GLY A 503 SITE 4 AC1 17 HOH A2278 HOH A2369 HOH A2370 HOH A2371 SITE 5 AC1 17 MG A6081 SITE 1 AC2 5 GLU A 431 ASP A 455 HOH A2080 HOH A2272 SITE 2 AC2 5 PEP A6080 CRYST1 83.499 92.125 47.069 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011976 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010855 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021245 0.00000