HEADER ENDOCYTOSIS 25-NOV-10 2XZG TITLE CLATHRIN TERMINAL DOMAIN COMPLEXED WITH PITSTOP 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLATHRIN HEAVY CHAIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 1-364; COMPND 5 SYNONYM: CLATHRIN HEAVY CHAIN ON CHROMOSOME 17, CLH-17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENDOCYTOSIS, ENDOCYTOSIS INHIBITION EXPDTA X-RAY DIFFRACTION AUTHOR H.BULUT,L.VON KLEIST,W.SAENGER,V.HAUCKE REVDAT 2 20-DEC-23 2XZG 1 REMARK REVDAT 1 17-AUG-11 2XZG 0 JRNL AUTH L.VON KLEIST,W.STAHLSCHMIDT,H.BULUT,K.GROMOVA,D.PUCHKOV, JRNL AUTH 2 M.J.ROBERTSON,K.A.MACGREGOR,N.TOMLIN,A.PECHSTEIN,N.CHAU, JRNL AUTH 3 M.CHIRCOP,J.SAKOFF,J.P.VON KRIES,W.SAENGER,H.KRAUSSLICH, JRNL AUTH 4 O.SHUPLIAKOV,P.J.ROBINSON,A.MCCLUSKEY,V.HAUCKE JRNL TITL ROLE OF THE CLATHRIN TERMINAL DOMAIN IN REGULATING COATED JRNL TITL 2 PIT DYNAMICS REVEALED BY SMALL MOLECULE INHIBITION. JRNL REF CELL(CAMBRIDGE,MASS.) V. 146 471 2011 JRNL REFN ISSN 0092-8674 JRNL PMID 21816279 JRNL DOI 10.1016/J.CELL.2011.06.025 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2366 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2404 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2803 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 458 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.48000 REMARK 3 B22 (A**2) : -0.80000 REMARK 3 B33 (A**2) : 1.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.679 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2945 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1971 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3996 ; 1.865 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4825 ; 1.006 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 365 ; 6.651 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;36.498 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 507 ;13.398 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.298 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 448 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3252 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 554 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1813 ; 1.275 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 726 ; 0.374 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2951 ; 2.116 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1132 ; 2.977 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1045 ; 4.663 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2XZG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1290046352. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 291.0 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47297 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 33.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 1.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1C9I REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 150 MM POTASSIUM REMARK 280 ACETATE, 0.1 M TRIS, PH 8.0. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.67000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.19200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.95750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.19200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.67000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.95750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 358 REMARK 465 GLY A 359 REMARK 465 ALA A 360 REMARK 465 GLU A 361 REMARK 465 GLU A 362 REMARK 465 LEU A 363 REMARK 465 PHE A 364 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2125 O HOH A 2126 1.81 REMARK 500 O HOH A 2193 O HOH A 2202 2.08 REMARK 500 O HOH A 2200 O HOH A 2205 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 157 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 320 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 57 64.70 -155.36 REMARK 500 ASN A 60 67.97 -114.35 REMARK 500 GLN A 174 -118.53 54.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2056 DISTANCE = 6.19 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 PITSTOP 1 COMPOUND IS RESIDUE VH1, 2-(4-AMINOBENZYL)- REMARK 600 1,3-DIOXO-2,3-DIHYDRO-1H-BENZO[DE]ISOQUINOLINE-5-SULFONATE. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1358 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VH1 A 1362 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XZH RELATED DB: PDB REMARK 900 CLATHRIN TERMINAL DOMAIN COMPLEXED WITH PITSTOP 2 DBREF 2XZG A 1 364 UNP Q00610 CLH1_HUMAN 1 364 SEQADV 2XZG PHE A 0 UNP Q00610 EXPRESSION TAG SEQRES 1 A 365 PHE MET ALA GLN ILE LEU PRO ILE ARG PHE GLN GLU HIS SEQRES 2 A 365 LEU GLN LEU GLN ASN LEU GLY ILE ASN PRO ALA ASN ILE SEQRES 3 A 365 GLY PHE SER THR LEU THR MET GLU SER ASP LYS PHE ILE SEQRES 4 A 365 CYS ILE ARG GLU LYS VAL GLY GLU GLN ALA GLN VAL VAL SEQRES 5 A 365 ILE ILE ASP MET ASN ASP PRO SER ASN PRO ILE ARG ARG SEQRES 6 A 365 PRO ILE SER ALA ASP SER ALA ILE MET ASN PRO ALA SER SEQRES 7 A 365 LYS VAL ILE ALA LEU LYS ALA GLY LYS THR LEU GLN ILE SEQRES 8 A 365 PHE ASN ILE GLU MET LYS SER LYS MET LYS ALA HIS THR SEQRES 9 A 365 MET THR ASP ASP VAL THR PHE TRP LYS TRP ILE SER LEU SEQRES 10 A 365 ASN THR VAL ALA LEU VAL THR ASP ASN ALA VAL TYR HIS SEQRES 11 A 365 TRP SER MET GLU GLY GLU SER GLN PRO VAL LYS MET PHE SEQRES 12 A 365 ASP ARG HIS SER SER LEU ALA GLY CYS GLN ILE ILE ASN SEQRES 13 A 365 TYR ARG THR ASP ALA LYS GLN LYS TRP LEU LEU LEU THR SEQRES 14 A 365 GLY ILE SER ALA GLN GLN ASN ARG VAL VAL GLY ALA MET SEQRES 15 A 365 GLN LEU TYR SER VAL ASP ARG LYS VAL SER GLN PRO ILE SEQRES 16 A 365 GLU GLY HIS ALA ALA SER PHE ALA GLN PHE LYS MET GLU SEQRES 17 A 365 GLY ASN ALA GLU GLU SER THR LEU PHE CYS PHE ALA VAL SEQRES 18 A 365 ARG GLY GLN ALA GLY GLY LYS LEU HIS ILE ILE GLU VAL SEQRES 19 A 365 GLY THR PRO PRO THR GLY ASN GLN PRO PHE PRO LYS LYS SEQRES 20 A 365 ALA VAL ASP VAL PHE PHE PRO PRO GLU ALA GLN ASN ASP SEQRES 21 A 365 PHE PRO VAL ALA MET GLN ILE SER GLU LYS HIS ASP VAL SEQRES 22 A 365 VAL PHE LEU ILE THR LYS TYR GLY TYR ILE HIS LEU TYR SEQRES 23 A 365 ASP LEU GLU THR GLY THR CYS ILE TYR MET ASN ARG ILE SEQRES 24 A 365 SER GLY GLU THR ILE PHE VAL THR ALA PRO HIS GLU ALA SEQRES 25 A 365 THR ALA GLY ILE ILE GLY VAL ASN ARG LYS GLY GLN VAL SEQRES 26 A 365 LEU SER VAL CYS VAL GLU GLU GLU ASN ILE ILE PRO TYR SEQRES 27 A 365 ILE THR ASN VAL LEU GLN ASN PRO ASP LEU ALA LEU ARG SEQRES 28 A 365 MET ALA VAL ARG ASN ASN LEU ALA GLY ALA GLU GLU LEU SEQRES 29 A 365 PHE HET PEG A1358 7 HET PEG A1359 7 HET GOL A1360 6 HET ACT A1361 4 HET VH1 A1362 27 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM VH1 2-(4-AMINOBENZYL)-1,3-DIOXO-2,3-DIHYDRO-1H- HETNAM 2 VH1 BENZO[DE]ISOQUINOLINE-5-SULFONATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PEG 2(C4 H10 O3) FORMUL 4 GOL C3 H8 O3 FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 VH1 C19 H13 N2 O5 S 1- FORMUL 7 HOH *458(H2 O) HELIX 1 1 GLN A 16 GLY A 19 5 4 HELIX 2 2 ASN A 21 ILE A 25 5 5 HELIX 3 3 HIS A 145 ALA A 149 5 5 HELIX 4 4 ASN A 333 VAL A 341 1 9 HELIX 5 5 ASN A 344 LEU A 357 1 14 SHEET 1 AA 4 ILE A 7 GLN A 14 0 SHEET 2 AA 4 GLN A 323 VAL A 329 -1 O VAL A 324 N HIS A 12 SHEET 3 AA 4 GLY A 314 ASN A 319 -1 O ILE A 315 N VAL A 327 SHEET 4 AA 4 ILE A 303 HIS A 309 -1 N PHE A 304 O VAL A 318 SHEET 1 AB 4 LEU A 30 SER A 34 0 SHEET 2 AB 4 PHE A 37 VAL A 44 -1 O PHE A 37 N SER A 34 SHEET 3 AB 4 GLN A 47 ASP A 54 -1 O GLN A 47 N VAL A 44 SHEET 4 AB 4 ILE A 62 PRO A 65 -1 O ILE A 62 N ILE A 52 SHEET 1 AC 4 SER A 70 MET A 73 0 SHEET 2 AC 4 VAL A 79 ALA A 84 -1 O ALA A 81 N ILE A 72 SHEET 3 AC 4 THR A 87 ASN A 92 -1 O THR A 87 N ALA A 84 SHEET 4 AC 4 SER A 97 THR A 103 -1 O SER A 97 N ASN A 92 SHEET 1 AD 4 VAL A 108 TRP A 113 0 SHEET 2 AD 4 THR A 118 THR A 123 -1 O ALA A 120 N LYS A 112 SHEET 3 AD 4 ALA A 126 SER A 131 -1 O ALA A 126 N THR A 123 SHEET 4 AD 4 VAL A 139 ASP A 143 -1 O VAL A 139 N HIS A 129 SHEET 1 AE 4 GLN A 152 THR A 158 0 SHEET 2 AE 4 TRP A 164 GLN A 173 -1 O LEU A 166 N ARG A 157 SHEET 3 AE 4 ARG A 176 SER A 185 -1 O ARG A 176 N GLN A 173 SHEET 4 AE 4 VAL A 190 ILE A 194 -1 O VAL A 190 N SER A 185 SHEET 1 AF 4 ALA A 198 PHE A 204 0 SHEET 2 AF 4 SER A 213 GLY A 222 -1 O SER A 213 N PHE A 204 SHEET 3 AF 4 GLY A 225 GLU A 232 -1 O GLY A 225 N GLY A 222 SHEET 4 AF 4 LYS A 246 VAL A 250 -1 O LYS A 246 N ILE A 230 SHEET 1 AG 4 PRO A 261 SER A 267 0 SHEET 2 AG 4 VAL A 272 THR A 277 -1 O VAL A 272 N SER A 267 SHEET 3 AG 4 TYR A 281 ASP A 286 -1 O TYR A 281 N THR A 277 SHEET 4 AG 4 CYS A 292 ARG A 297 -1 N ILE A 293 O LEU A 284 SITE 1 AC1 5 PHE A 0 GLY A 150 SER A 171 ALA A 172 SITE 2 AC1 5 HOH A2454 SITE 1 AC2 7 TRP A 164 LEU A 183 SER A 185 ARG A 188 SITE 2 AC2 7 VAL A 190 GLN A 192 GLY A 234 SITE 1 AC3 5 HIS A 129 HOH A2181 HOH A2203 HOH A2455 SITE 2 AC3 5 HOH A2456 SITE 1 AC4 3 LYS A 227 VAL A 248 ASP A 249 SITE 1 AC5 12 ILE A 62 ARG A 64 ILE A 66 LEU A 82 SITE 2 AC5 12 GLN A 89 PHE A 91 ILE A 93 LYS A 96 SITE 3 AC5 12 GLN A 174 HOH A2007 HOH A2097 HOH A2103 CRYST1 71.340 73.915 84.384 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014017 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011851 0.00000