data_2Y1B # _entry.id 2Y1B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.312 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2Y1B PDBE EBI-46517 WWPDB D_1290046517 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Y1B _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-12-07 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Declercq, J.P.' 1 'Leverrier, P.' 2 'Boujtat, A.' 3 'Collet, J.F.' 4 # _citation.id primary _citation.title 'Crystal Structure of the Outer Membrane Protein Rcsf, a New Substrate for the Periplasmic Protein- Disulfide Isomerase Dsbc.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 286 _citation.page_first 16734 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21454485 _citation.pdbx_database_id_DOI 10.1074/JBC.M111.224865 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Leverrier, P.' 1 ? primary 'Declercq, J.P.' 2 ? primary 'Denoncin, K.' 3 ? primary 'Vertommen, D.' 4 ? primary 'Hiniker, A.' 5 ? primary 'Cho, S.H.' 6 ? primary 'Collet, J.F.' 7 ? # _cell.entry_id 2Y1B _cell.length_a 55.714 _cell.length_b 55.714 _cell.length_c 61.679 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y1B _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PUTATIVE OUTER MEMBRANE PROTEIN, SIGNAL' 13765.681 1 ? ? 'PERIPLASMIC DOMAIN, RESIDUES 17-134' ? 2 non-polymer syn '5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid' 558.835 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 46 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RCSF PROTEIN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQI NASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNITAKLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQI NASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNITAKLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 MET n 1 5 LEU n 1 6 SER n 1 7 ARG n 1 8 SER n 1 9 PRO n 1 10 VAL n 1 11 GLU n 1 12 PRO n 1 13 VAL n 1 14 GLN n 1 15 SER n 1 16 THR n 1 17 ALA n 1 18 PRO n 1 19 GLN n 1 20 PRO n 1 21 LYS n 1 22 ALA n 1 23 GLU n 1 24 PRO n 1 25 ALA n 1 26 LYS n 1 27 PRO n 1 28 LYS n 1 29 ALA n 1 30 PRO n 1 31 ARG n 1 32 ALA n 1 33 THR n 1 34 PRO n 1 35 VAL n 1 36 ARG n 1 37 ILE n 1 38 TYR n 1 39 THR n 1 40 ASN n 1 41 ALA n 1 42 GLU n 1 43 GLU n 1 44 LEU n 1 45 VAL n 1 46 GLY n 1 47 LYS n 1 48 PRO n 1 49 PHE n 1 50 ARG n 1 51 ASP n 1 52 LEU n 1 53 GLY n 1 54 GLU n 1 55 VAL n 1 56 SER n 1 57 GLY n 1 58 ASP n 1 59 SER n 1 60 CYS n 1 61 GLN n 1 62 ALA n 1 63 SER n 1 64 ASN n 1 65 GLN n 1 66 ASP n 1 67 SER n 1 68 PRO n 1 69 PRO n 1 70 SER n 1 71 ILE n 1 72 PRO n 1 73 THR n 1 74 ALA n 1 75 ARG n 1 76 LYS n 1 77 ARG n 1 78 MET n 1 79 GLN n 1 80 ILE n 1 81 ASN n 1 82 ALA n 1 83 SER n 1 84 LYS n 1 85 MET n 1 86 LYS n 1 87 ALA n 1 88 ASN n 1 89 ALA n 1 90 VAL n 1 91 LEU n 1 92 LEU n 1 93 HIS n 1 94 SER n 1 95 CYS n 1 96 GLU n 1 97 VAL n 1 98 THR n 1 99 SER n 1 100 GLY n 1 101 THR n 1 102 PRO n 1 103 GLY n 1 104 CYS n 1 105 TYR n 1 106 ARG n 1 107 GLN n 1 108 ALA n 1 109 VAL n 1 110 CYS n 1 111 ILE n 1 112 GLY n 1 113 SER n 1 114 ALA n 1 115 LEU n 1 116 ASN n 1 117 ILE n 1 118 THR n 1 119 ALA n 1 120 LYS n 1 121 LEU n 1 122 GLU n 1 123 HIS n 1 124 HIS n 1 125 HIS n 1 126 HIS n 1 127 HIS n 1 128 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K-12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant MC1000 _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant 'ROSETTA GAMI' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET28A _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A1A7P0_ECOK1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession A1A7P0 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2Y1B _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 120 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A1A7P0 _struct_ref_seq.db_align_beg 17 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 134 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 17 _struct_ref_seq.pdbx_auth_seq_align_end 134 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2Y1B MET A 1 ? UNP A1A7P0 ? ? 'expression tag' 15 1 1 2Y1B GLY A 2 ? UNP A1A7P0 ? ? 'expression tag' 16 2 1 2Y1B LEU A 121 ? UNP A1A7P0 ? ? 'expression tag' 135 3 1 2Y1B GLU A 122 ? UNP A1A7P0 ? ? 'expression tag' 136 4 1 2Y1B HIS A 123 ? UNP A1A7P0 ? ? 'expression tag' 137 5 1 2Y1B HIS A 124 ? UNP A1A7P0 ? ? 'expression tag' 138 6 1 2Y1B HIS A 125 ? UNP A1A7P0 ? ? 'expression tag' 139 7 1 2Y1B HIS A 126 ? UNP A1A7P0 ? ? 'expression tag' 140 8 1 2Y1B HIS A 127 ? UNP A1A7P0 ? ? 'expression tag' 141 9 1 2Y1B HIS A 128 ? UNP A1A7P0 ? ? 'expression tag' 142 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 I3C non-polymer . '5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid' '5-Amino-2,4,6-triiodoisophthalic acid' 'C8 H4 I3 N O4' 558.835 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2Y1B _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.92 _exptl_crystal.density_percent_sol 36 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;HANGING DROP: PROTEIN 11MG/ML MIXED WITH I3C 20 MM RESERVOIR: 1.8M AMMONIUM SULFATE, 0.1M SODIUM ACETATE PH 4.5, DROP: 1 MICROL AND 1 MICROL. ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2010-10-07 _diffrn_detector.details 'MIRROR 2 VERTICALLY FOCUSSING' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL SI(111), HORIZONTALLY FOCUSSING' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97791 1.0 2 1.5 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X12' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X12 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97791, 1.5' # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2Y1B _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.00 _reflns.d_resolution_high 2.00 _reflns.number_obs 7786 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.50 _reflns.B_iso_Wilson_estimate 34 _reflns.pdbx_redundancy 3.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.20 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.53 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.70 _reflns_shell.pdbx_redundancy 3.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2Y1B _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7428 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 48.25 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.55 _refine.ls_R_factor_obs 0.19913 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19644 _refine.ls_R_factor_R_free 0.25752 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 358 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.926 _refine.B_iso_mean 24.541 _refine.aniso_B[1][1] 1.54 _refine.aniso_B[2][2] 1.54 _refine.aniso_B[3][3] -2.31 _refine.aniso_B[1][2] 0.77 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.156 _refine.pdbx_overall_ESU_R_Free 0.161 _refine.overall_SU_ML 0.122 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.568 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 636 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 46 _refine_hist.number_atoms_total 703 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 48.25 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.022 0.022 ? 667 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 441 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.157 2.007 ? 908 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.048 3.000 ? 1084 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 8.614 5.000 ? 85 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.947 24.400 ? 25 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.598 15.000 ? 110 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.583 15.000 ? 5 'X-RAY DIFFRACTION' ? r_chiral_restr 0.119 0.200 ? 102 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.021 ? 739 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 114 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.248 1.500 ? 429 'X-RAY DIFFRACTION' ? r_mcbond_other 0.277 1.500 ? 171 'X-RAY DIFFRACTION' ? r_mcangle_it 2.370 2.000 ? 694 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.603 3.000 ? 238 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 6.013 4.500 ? 214 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.number_reflns_R_work 552 _refine_ls_shell.R_factor_R_work 0.254 _refine_ls_shell.percent_reflns_obs 99.14 _refine_ls_shell.R_factor_R_free 0.326 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 22 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2Y1B _struct.title 'Crystal structure of the E. coli outer membrane lipoprotein RcsF' _struct.pdbx_descriptor 'PUTATIVE OUTER MEMBRANE PROTEIN, SIGNAL' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Y1B _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text 'MEMBRANE PROTEIN, RCS, PHOSPHORELAY, MUCOIDITY, COLANIC ACID, CAPSULE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 40 ? VAL A 45 ? ASN A 54 VAL A 59 5 ? 6 HELX_P HELX_P2 2 SER A 70 ? MET A 85 ? SER A 84 MET A 99 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 60 SG ? ? ? 1_555 A CYS 104 SG ? ? A CYS 74 A CYS 118 1_555 ? ? ? ? ? ? ? 2.037 ? disulf2 disulf ? ? A CYS 95 SG ? ? ? 1_555 A CYS 110 SG ? ? A CYS 109 A CYS 124 1_555 ? ? ? ? ? ? ? 2.024 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ARG A 36 ? TYR A 38 ? ARG A 50 TYR A 52 AA 2 ALA A 89 ? THR A 98 ? ALA A 103 THR A 112 AA 3 ARG A 106 ? ILE A 117 ? ARG A 120 ILE A 131 AA 4 PHE A 49 ? GLN A 61 ? PHE A 63 GLN A 75 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N TYR A 38 ? N TYR A 52 O VAL A 90 ? O VAL A 104 AA 2 3 N THR A 98 ? N THR A 112 O GLN A 107 ? O GLN A 121 AA 3 4 N ASN A 116 ? N ASN A 130 O ARG A 50 ? O ARG A 64 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE I3C A 1133' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 1134' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 SER A 67 ? SER A 81 . ? 2_655 ? 2 AC1 7 PRO A 68 ? PRO A 82 . ? 2_655 ? 3 AC1 7 SER A 70 ? SER A 84 . ? 2_655 ? 4 AC1 7 PRO A 72 ? PRO A 86 . ? 2_655 ? 5 AC1 7 HIS A 93 ? HIS A 107 . ? 1_555 ? 6 AC1 7 HOH D . ? HOH A 2043 . ? 1_555 ? 7 AC1 7 HOH D . ? HOH A 2044 . ? 1_555 ? 8 AC2 6 SER A 59 ? SER A 73 . ? 1_555 ? 9 AC2 6 CYS A 60 ? CYS A 74 . ? 1_555 ? 10 AC2 6 ARG A 77 ? ARG A 91 . ? 1_555 ? 11 AC2 6 ASN A 81 ? ASN A 95 . ? 4_555 ? 12 AC2 6 HOH D . ? HOH A 2045 . ? 1_555 ? 13 AC2 6 HOH D . ? HOH A 2046 . ? 1_555 ? # _database_PDB_matrix.entry_id 2Y1B _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2Y1B _atom_sites.fract_transf_matrix[1][1] 0.017949 _atom_sites.fract_transf_matrix[1][2] 0.010363 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020726 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016213 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 15 ? ? ? A . n A 1 2 GLY 2 16 ? ? ? A . n A 1 3 SER 3 17 ? ? ? A . n A 1 4 MET 4 18 ? ? ? A . n A 1 5 LEU 5 19 ? ? ? A . n A 1 6 SER 6 20 ? ? ? A . n A 1 7 ARG 7 21 ? ? ? A . n A 1 8 SER 8 22 ? ? ? A . n A 1 9 PRO 9 23 ? ? ? A . n A 1 10 VAL 10 24 ? ? ? A . n A 1 11 GLU 11 25 ? ? ? A . n A 1 12 PRO 12 26 ? ? ? A . n A 1 13 VAL 13 27 ? ? ? A . n A 1 14 GLN 14 28 ? ? ? A . n A 1 15 SER 15 29 ? ? ? A . n A 1 16 THR 16 30 ? ? ? A . n A 1 17 ALA 17 31 ? ? ? A . n A 1 18 PRO 18 32 ? ? ? A . n A 1 19 GLN 19 33 ? ? ? A . n A 1 20 PRO 20 34 ? ? ? A . n A 1 21 LYS 21 35 ? ? ? A . n A 1 22 ALA 22 36 ? ? ? A . n A 1 23 GLU 23 37 ? ? ? A . n A 1 24 PRO 24 38 ? ? ? A . n A 1 25 ALA 25 39 ? ? ? A . n A 1 26 LYS 26 40 ? ? ? A . n A 1 27 PRO 27 41 ? ? ? A . n A 1 28 LYS 28 42 ? ? ? A . n A 1 29 ALA 29 43 ? ? ? A . n A 1 30 PRO 30 44 ? ? ? A . n A 1 31 ARG 31 45 ? ? ? A . n A 1 32 ALA 32 46 ? ? ? A . n A 1 33 THR 33 47 47 THR THR A . n A 1 34 PRO 34 48 48 PRO PRO A . n A 1 35 VAL 35 49 49 VAL VAL A . n A 1 36 ARG 36 50 50 ARG ARG A . n A 1 37 ILE 37 51 51 ILE ILE A . n A 1 38 TYR 38 52 52 TYR TYR A . n A 1 39 THR 39 53 53 THR THR A . n A 1 40 ASN 40 54 54 ASN ASN A . n A 1 41 ALA 41 55 55 ALA ALA A . n A 1 42 GLU 42 56 56 GLU GLU A . n A 1 43 GLU 43 57 57 GLU GLU A . n A 1 44 LEU 44 58 58 LEU LEU A . n A 1 45 VAL 45 59 59 VAL VAL A . n A 1 46 GLY 46 60 60 GLY GLY A . n A 1 47 LYS 47 61 61 LYS LYS A . n A 1 48 PRO 48 62 62 PRO PRO A . n A 1 49 PHE 49 63 63 PHE PHE A . n A 1 50 ARG 50 64 64 ARG ARG A . n A 1 51 ASP 51 65 65 ASP ASP A . n A 1 52 LEU 52 66 66 LEU LEU A . n A 1 53 GLY 53 67 67 GLY GLY A . n A 1 54 GLU 54 68 68 GLU GLU A . n A 1 55 VAL 55 69 69 VAL VAL A . n A 1 56 SER 56 70 70 SER SER A . n A 1 57 GLY 57 71 71 GLY GLY A . n A 1 58 ASP 58 72 72 ASP ASP A . n A 1 59 SER 59 73 73 SER SER A . n A 1 60 CYS 60 74 74 CYS CYS A . n A 1 61 GLN 61 75 75 GLN GLN A . n A 1 62 ALA 62 76 76 ALA ALA A . n A 1 63 SER 63 77 77 SER SER A . n A 1 64 ASN 64 78 78 ASN ASN A . n A 1 65 GLN 65 79 79 GLN GLN A . n A 1 66 ASP 66 80 80 ASP ASP A . n A 1 67 SER 67 81 81 SER SER A . n A 1 68 PRO 68 82 82 PRO PRO A . n A 1 69 PRO 69 83 83 PRO PRO A . n A 1 70 SER 70 84 84 SER SER A . n A 1 71 ILE 71 85 85 ILE ILE A . n A 1 72 PRO 72 86 86 PRO PRO A . n A 1 73 THR 73 87 87 THR THR A . n A 1 74 ALA 74 88 88 ALA ALA A . n A 1 75 ARG 75 89 89 ARG ARG A . n A 1 76 LYS 76 90 90 LYS LYS A . n A 1 77 ARG 77 91 91 ARG ARG A . n A 1 78 MET 78 92 92 MET MET A . n A 1 79 GLN 79 93 93 GLN GLN A . n A 1 80 ILE 80 94 94 ILE ILE A . n A 1 81 ASN 81 95 95 ASN ASN A . n A 1 82 ALA 82 96 96 ALA ALA A . n A 1 83 SER 83 97 97 SER SER A . n A 1 84 LYS 84 98 98 LYS LYS A . n A 1 85 MET 85 99 99 MET MET A . n A 1 86 LYS 86 100 100 LYS LYS A . n A 1 87 ALA 87 101 101 ALA ALA A . n A 1 88 ASN 88 102 102 ASN ASN A . n A 1 89 ALA 89 103 103 ALA ALA A . n A 1 90 VAL 90 104 104 VAL VAL A . n A 1 91 LEU 91 105 105 LEU LEU A . n A 1 92 LEU 92 106 106 LEU LEU A . n A 1 93 HIS 93 107 107 HIS HIS A . n A 1 94 SER 94 108 108 SER SER A . n A 1 95 CYS 95 109 109 CYS CYS A . n A 1 96 GLU 96 110 110 GLU GLU A . n A 1 97 VAL 97 111 111 VAL VAL A . n A 1 98 THR 98 112 112 THR THR A . n A 1 99 SER 99 113 113 SER SER A . n A 1 100 GLY 100 114 114 GLY GLY A . n A 1 101 THR 101 115 115 THR THR A . n A 1 102 PRO 102 116 116 PRO PRO A . n A 1 103 GLY 103 117 117 GLY GLY A . n A 1 104 CYS 104 118 118 CYS CYS A . n A 1 105 TYR 105 119 119 TYR TYR A . n A 1 106 ARG 106 120 120 ARG ARG A . n A 1 107 GLN 107 121 121 GLN GLN A . n A 1 108 ALA 108 122 122 ALA ALA A . n A 1 109 VAL 109 123 123 VAL VAL A . n A 1 110 CYS 110 124 124 CYS CYS A . n A 1 111 ILE 111 125 125 ILE ILE A . n A 1 112 GLY 112 126 126 GLY GLY A . n A 1 113 SER 113 127 127 SER SER A . n A 1 114 ALA 114 128 128 ALA ALA A . n A 1 115 LEU 115 129 129 LEU LEU A . n A 1 116 ASN 116 130 130 ASN ASN A . n A 1 117 ILE 117 131 131 ILE ILE A . n A 1 118 THR 118 132 132 THR THR A . n A 1 119 ALA 119 133 ? ? ? A . n A 1 120 LYS 120 134 ? ? ? A . n A 1 121 LEU 121 135 ? ? ? A . n A 1 122 GLU 122 136 ? ? ? A . n A 1 123 HIS 123 137 ? ? ? A . n A 1 124 HIS 124 138 ? ? ? A . n A 1 125 HIS 125 139 ? ? ? A . n A 1 126 HIS 126 140 ? ? ? A . n A 1 127 HIS 127 141 ? ? ? A . n A 1 128 HIS 128 142 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I3C 1 1133 1133 I3C I3C A . C 3 SO4 1 1134 1134 SO4 SO4 A . D 4 HOH 1 2001 2001 HOH HOH A . D 4 HOH 2 2002 2002 HOH HOH A . D 4 HOH 3 2003 2003 HOH HOH A . D 4 HOH 4 2004 2004 HOH HOH A . D 4 HOH 5 2005 2005 HOH HOH A . D 4 HOH 6 2006 2006 HOH HOH A . D 4 HOH 7 2007 2007 HOH HOH A . D 4 HOH 8 2008 2008 HOH HOH A . D 4 HOH 9 2009 2009 HOH HOH A . D 4 HOH 10 2010 2010 HOH HOH A . D 4 HOH 11 2011 2011 HOH HOH A . D 4 HOH 12 2012 2012 HOH HOH A . D 4 HOH 13 2013 2013 HOH HOH A . D 4 HOH 14 2014 2014 HOH HOH A . D 4 HOH 15 2015 2015 HOH HOH A . D 4 HOH 16 2016 2016 HOH HOH A . D 4 HOH 17 2017 2017 HOH HOH A . D 4 HOH 18 2018 2018 HOH HOH A . D 4 HOH 19 2019 2019 HOH HOH A . D 4 HOH 20 2020 2020 HOH HOH A . D 4 HOH 21 2021 2021 HOH HOH A . D 4 HOH 22 2022 2022 HOH HOH A . D 4 HOH 23 2023 2023 HOH HOH A . D 4 HOH 24 2024 2024 HOH HOH A . D 4 HOH 25 2025 2025 HOH HOH A . D 4 HOH 26 2026 2026 HOH HOH A . D 4 HOH 27 2027 2027 HOH HOH A . D 4 HOH 28 2028 2028 HOH HOH A . D 4 HOH 29 2029 2029 HOH HOH A . D 4 HOH 30 2030 2030 HOH HOH A . D 4 HOH 31 2031 2031 HOH HOH A . D 4 HOH 32 2032 2032 HOH HOH A . D 4 HOH 33 2033 2033 HOH HOH A . D 4 HOH 34 2034 2034 HOH HOH A . D 4 HOH 35 2035 2035 HOH HOH A . D 4 HOH 36 2036 2036 HOH HOH A . D 4 HOH 37 2037 2037 HOH HOH A . D 4 HOH 38 2038 2038 HOH HOH A . D 4 HOH 39 2039 2039 HOH HOH A . D 4 HOH 40 2040 2040 HOH HOH A . D 4 HOH 41 2041 2041 HOH HOH A . D 4 HOH 42 2042 2042 HOH HOH A . D 4 HOH 43 2043 2043 HOH HOH A . D 4 HOH 44 2044 2044 HOH HOH A . D 4 HOH 45 2045 2045 HOH HOH A . D 4 HOH 46 2046 2046 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2015 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-03-16 2 'Structure model' 1 1 2011-05-12 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-05-08 5 'Structure model' 1 4 2019-07-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Experimental preparation' 6 4 'Structure model' Other 7 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_PDB_rev 2 4 'Structure model' database_PDB_rev_record 3 4 'Structure model' exptl_crystal_grow 4 4 'Structure model' pdbx_database_proc 5 4 'Structure model' pdbx_database_status 6 4 'Structure model' pdbx_struct_special_symmetry 7 5 'Structure model' diffrn_source # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.method' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0102 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 Auto-Rickshaw phasing . ? 4 # _pdbx_entry_details.entry_id 2Y1B _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;5-AMINO-2,4,6-TRIIODOISOPHTHALIC ACID (I3C): THIS MOLECULE IS THE MAGIC TRIANGLE DESCRIBED BY TOBIAS BECK ET AL. ACTA CRYST. 2008, D64, 1179-1182 ; _pdbx_entry_details.sequence_details ;RCSF WAS CLONED WITHOUT THE SEQUENCE CORRESPONDING TO THE PUTATIVE LIPOBOX. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 48 ? ? -72.67 44.60 2 1 THR A 115 ? ? -36.77 129.78 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 15 ? A MET 1 2 1 Y 1 A GLY 16 ? A GLY 2 3 1 Y 1 A SER 17 ? A SER 3 4 1 Y 1 A MET 18 ? A MET 4 5 1 Y 1 A LEU 19 ? A LEU 5 6 1 Y 1 A SER 20 ? A SER 6 7 1 Y 1 A ARG 21 ? A ARG 7 8 1 Y 1 A SER 22 ? A SER 8 9 1 Y 1 A PRO 23 ? A PRO 9 10 1 Y 1 A VAL 24 ? A VAL 10 11 1 Y 1 A GLU 25 ? A GLU 11 12 1 Y 1 A PRO 26 ? A PRO 12 13 1 Y 1 A VAL 27 ? A VAL 13 14 1 Y 1 A GLN 28 ? A GLN 14 15 1 Y 1 A SER 29 ? A SER 15 16 1 Y 1 A THR 30 ? A THR 16 17 1 Y 1 A ALA 31 ? A ALA 17 18 1 Y 1 A PRO 32 ? A PRO 18 19 1 Y 1 A GLN 33 ? A GLN 19 20 1 Y 1 A PRO 34 ? A PRO 20 21 1 Y 1 A LYS 35 ? A LYS 21 22 1 Y 1 A ALA 36 ? A ALA 22 23 1 Y 1 A GLU 37 ? A GLU 23 24 1 Y 1 A PRO 38 ? A PRO 24 25 1 Y 1 A ALA 39 ? A ALA 25 26 1 Y 1 A LYS 40 ? A LYS 26 27 1 Y 1 A PRO 41 ? A PRO 27 28 1 Y 1 A LYS 42 ? A LYS 28 29 1 Y 1 A ALA 43 ? A ALA 29 30 1 Y 1 A PRO 44 ? A PRO 30 31 1 Y 1 A ARG 45 ? A ARG 31 32 1 Y 1 A ALA 46 ? A ALA 32 33 1 Y 1 A ALA 133 ? A ALA 119 34 1 Y 1 A LYS 134 ? A LYS 120 35 1 Y 1 A LEU 135 ? A LEU 121 36 1 Y 1 A GLU 136 ? A GLU 122 37 1 Y 1 A HIS 137 ? A HIS 123 38 1 Y 1 A HIS 138 ? A HIS 124 39 1 Y 1 A HIS 139 ? A HIS 125 40 1 Y 1 A HIS 140 ? A HIS 126 41 1 Y 1 A HIS 141 ? A HIS 127 42 1 Y 1 A HIS 142 ? A HIS 128 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid' I3C 3 'SULFATE ION' SO4 4 water HOH #