data_2Y1Z # _entry.id 2Y1Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2Y1Z PDBE EBI-46652 WWPDB D_1290046652 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2WJ7 unspecified 'HUMAN ALPHAB CRYSTALLIN' PDB 2Y1Y unspecified 'HUMAN ALPHAB CRYSTALLIN ACD(RESIDUES 71-157)' PDB 2Y22 unspecified 'HUMAN ALPHAB-CRYSTALLIN DOMAIN (RESIDUES 67-157)' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Y1Z _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-12-10 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Clark, A.R.' 1 'Bagneris, C.' 2 'Naylor, C.E.' 3 'Keep, N.H.' 4 'Slingsby, C.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal Structure of R120G Disease Mutant of Human Alphab-Crystallin Domain Dimer Shows Closure of a Groove' J.Mol.Biol. 408 118 ? 2011 JMOBAK UK 0022-2836 0070 ? 21329698 10.1016/J.JMB.2011.02.020 1 'Crystal Structures of Alpha-Crystallin Domain Dimers of Alphab-Crystallin and Hsp20.' J.Mol.Biol. 392 1242 ? 2009 JMOBAK UK 0022-2836 0070 ? 19646995 10.1016/J.JMB.2009.07.069 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Clark, A.R.' 1 primary 'Naylor, C.E.' 2 primary 'Bagneris, C.' 3 primary 'Keep, N.H.' 4 primary 'Slingsby, C.' 5 1 'Bagneris, C.' 6 1 'Bateman, O.A.' 7 1 'Naylor, C.E.' 8 1 'Cronin, N.' 9 1 'Boelens, W.C.' 10 1 'Keep, N.H.' 11 1 'Slingsby, C.' 12 # _cell.entry_id 2Y1Z _cell.length_a 60.730 _cell.length_b 60.730 _cell.length_c 100.150 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y1Z _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ALPHA-CRYSTALLIN B CHAIN' 10646.999 2 ? YES 'ALPHA-CRYSTALLIN DOMAIN (ACD), RESIDUES 67-157' ? 2 non-polymer syn '(4R)-2-METHYLPENTANE-2,4-DIOL' 118.174 3 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 4 water nat water 18.015 14 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;ALPHAB-CRYSTALLIN, ALPHA(B)-CRYSTALLIN, HEAT SHOCK PROTEIN BETA-5, HSPB5, RENAL CARCINOMA ANTIGEN NY-REN-27, ROSENTHAL FIBER COMPONENT ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAMEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHGKYRIPADVDPLTITSSMSSDGVL TVNGPRKQVSGPER ; _entity_poly.pdbx_seq_one_letter_code_can ;GAMEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHGKYRIPADVDPLTITSSMSSDGVL TVNGPRKQVSGPER ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 GLU n 1 5 MET n 1 6 ARG n 1 7 LEU n 1 8 GLU n 1 9 LYS n 1 10 ASP n 1 11 ARG n 1 12 PHE n 1 13 SER n 1 14 VAL n 1 15 ASN n 1 16 LEU n 1 17 ASP n 1 18 VAL n 1 19 LYS n 1 20 HIS n 1 21 PHE n 1 22 SER n 1 23 PRO n 1 24 GLU n 1 25 GLU n 1 26 LEU n 1 27 LYS n 1 28 VAL n 1 29 LYS n 1 30 VAL n 1 31 LEU n 1 32 GLY n 1 33 ASP n 1 34 VAL n 1 35 ILE n 1 36 GLU n 1 37 VAL n 1 38 HIS n 1 39 GLY n 1 40 LYS n 1 41 HIS n 1 42 GLU n 1 43 GLU n 1 44 ARG n 1 45 GLN n 1 46 ASP n 1 47 GLU n 1 48 HIS n 1 49 GLY n 1 50 PHE n 1 51 ILE n 1 52 SER n 1 53 ARG n 1 54 GLU n 1 55 PHE n 1 56 HIS n 1 57 GLY n 1 58 LYS n 1 59 TYR n 1 60 ARG n 1 61 ILE n 1 62 PRO n 1 63 ALA n 1 64 ASP n 1 65 VAL n 1 66 ASP n 1 67 PRO n 1 68 LEU n 1 69 THR n 1 70 ILE n 1 71 THR n 1 72 SER n 1 73 SER n 1 74 MET n 1 75 SER n 1 76 SER n 1 77 ASP n 1 78 GLY n 1 79 VAL n 1 80 LEU n 1 81 THR n 1 82 VAL n 1 83 ASN n 1 84 GLY n 1 85 PRO n 1 86 ARG n 1 87 LYS n 1 88 GLN n 1 89 VAL n 1 90 SER n 1 91 GLY n 1 92 PRO n 1 93 GLU n 1 94 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector 'PPROEX HT(B)' _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CRYAB_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P02511 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2Y1Z A 4 ? 94 ? P02511 67 ? 157 ? 67 157 2 1 2Y1Z B 4 ? 94 ? P02511 67 ? 157 ? 67 157 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2Y1Z GLY A 1 ? UNP P02511 ? ? 'expression tag' 64 1 1 2Y1Z ALA A 2 ? UNP P02511 ? ? 'expression tag' 65 2 1 2Y1Z MET A 3 ? UNP P02511 ? ? 'expression tag' 66 3 1 2Y1Z GLY A 57 ? UNP P02511 ARG 120 'engineered mutation' 120 4 1 2Y1Z MET A 74 ? UNP P02511 LEU 137 'engineered mutation' 137 5 2 2Y1Z GLY B 1 ? UNP P02511 ? ? 'expression tag' 64 6 2 2Y1Z ALA B 2 ? UNP P02511 ? ? 'expression tag' 65 7 2 2Y1Z MET B 3 ? UNP P02511 ? ? 'expression tag' 66 8 2 2Y1Z GLY B 57 ? UNP P02511 ARG 120 'engineered mutation' 120 9 2 2Y1Z MET B 74 ? UNP P02511 LEU 137 'engineered mutation' 137 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 MRD non-polymer . '(4R)-2-METHYLPENTANE-2,4-DIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2Y1Z _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.49 _exptl_crystal.density_percent_sol 50.6 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;PROTEIN AT 16.5 MG/ML IN BUFFER (25 MM TRISHCL, PH 7.5, 25 MM NACL) WAS MIXED 1:1 WITH MOTHER LIQUOR (36% MPD, 0.18M POTASSIUM CHLORIDE) ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2010-06-24 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator CRYSTAL _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.87 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.87 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2Y1Z _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 46.60 _reflns.d_resolution_high 2.50 _reflns.number_obs 7582 _reflns.number_all ? _reflns.percent_possible_obs 98.0 _reflns.pdbx_Rmerge_I_obs 0.10 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.40 _reflns.B_iso_Wilson_estimate 43.7 _reflns.pdbx_redundancy 9.2 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.64 _reflns_shell.percent_possible_all 97.8 _reflns_shell.Rmerge_I_obs 0.54 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.30 _reflns_shell.pdbx_redundancy 9.1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2Y1Z _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 6777 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.27 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 96.88 _refine.ls_R_factor_obs 0.18047 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17335 _refine.ls_R_factor_R_free 0.24052 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.4 _refine.ls_number_reflns_R_free 788 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.933 _refine.correlation_coeff_Fo_to_Fc_free 0.892 _refine.B_iso_mean 31.194 _refine.aniso_B[1][1] 6.51 _refine.aniso_B[2][2] 6.51 _refine.aniso_B[3][3] -13.02 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'HUMAN ALPHA-CRYSTALLIN DOMAIN RESIDUES 71- 157' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.104 _refine.pdbx_overall_ESU_R_Free 0.060 _refine.overall_SU_ML 0.189 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 18.426 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1340 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 14 _refine_hist.number_atoms_total 1386 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 36.27 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.021 ? 1416 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.964 1.978 ? 1915 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.338 5.000 ? 176 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.642 23.714 ? 70 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.405 15.000 ? 243 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.055 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.064 0.200 ? 209 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.021 ? 1068 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.213 1.500 ? 862 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.410 2.000 ? 1395 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 0.662 3.000 ? 554 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 1.128 4.500 ? 517 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 A 495 0.41 5.00 'loose positional' 1 1 'X-RAY DIFFRACTION' ? ? ? 2 B 495 0.41 5.00 'loose positional' 1 2 'X-RAY DIFFRACTION' ? ? ? 1 A 495 2.49 50.00 'loose thermal' 1 3 'X-RAY DIFFRACTION' ? ? ? 2 B 495 2.49 50.00 'loose thermal' 1 4 'X-RAY DIFFRACTION' ? ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.499 _refine_ls_shell.d_res_low 2.563 _refine_ls_shell.number_reflns_R_work 469 _refine_ls_shell.R_factor_R_work 0.219 _refine_ls_shell.percent_reflns_obs 93.77 _refine_ls_shell.R_factor_R_free 0.390 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 58 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.996000 _struct_ncs_oper.matrix[1][2] -0.088000 _struct_ncs_oper.matrix[1][3] 0.032000 _struct_ncs_oper.matrix[2][1] -0.086000 _struct_ncs_oper.matrix[2][2] 0.994000 _struct_ncs_oper.matrix[2][3] 0.062000 _struct_ncs_oper.matrix[3][1] -0.037000 _struct_ncs_oper.matrix[3][2] 0.059000 _struct_ncs_oper.matrix[3][3] -0.998000 _struct_ncs_oper.vector[1] 60.04700 _struct_ncs_oper.vector[2] 1.95000 _struct_ncs_oper.vector[3] 15.32900 # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 B 1 # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 A 70 A 105 1 6 ? ? ? ? ? ? ? ? 1 ? 2 B 70 B 105 1 6 ? ? ? ? ? ? ? ? 1 ? 1 A 116 A 145 2 6 ? ? ? ? ? ? ? ? 1 ? 2 B 116 B 145 2 6 ? ? ? ? ? ? ? ? 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 2Y1Z _struct.title 'Human alphaB Crystallin ACD R120G' _struct.pdbx_descriptor 'ALPHA-CRYSTALLIN B CHAIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Y1Z _struct_keywords.pdbx_keywords CHAPERONE _struct_keywords.text 'SMALL HEAT SHOCK PROTEIN, CHAPERONE, STRESS PROTEIN, EYE LENS PROTEIN, CATARACT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 2 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 22 ? GLU A 24 ? SER A 85 GLU A 87 5 ? 3 HELX_P HELX_P2 2 ASP A 66 ? ILE A 70 ? ASP A 129 ILE A 133 5 ? 5 HELX_P HELX_P3 3 SER B 22 ? GLU B 24 ? SER B 85 GLU B 87 5 ? 3 HELX_P HELX_P4 4 ASP B 66 ? ILE B 70 ? ASP B 129 ILE B 133 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASP _struct_mon_prot_cis.label_seq_id 46 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASP _struct_mon_prot_cis.auth_seq_id 109 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 GLU _struct_mon_prot_cis.pdbx_label_seq_id_2 47 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLU _struct_mon_prot_cis.pdbx_auth_seq_id_2 110 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.65 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 6 ? BA ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel AB 5 6 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BA 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 MET A 5 ? LEU A 7 ? MET A 68 LEU A 70 AA 2 ARG A 11 ? ASP A 17 ? ARG A 74 ASP A 80 AA 3 VAL A 79 ? PRO A 85 ? VAL A 142 PRO A 148 AA 4 THR A 71 ? MET A 74 ? THR A 134 MET A 137 AB 1 LEU A 26 ? LEU A 31 ? LEU A 89 LEU A 94 AB 2 VAL A 34 ? GLU A 42 ? VAL A 97 GLU A 105 AB 3 GLY A 49 ? ARG A 60 ? GLY A 112 ARG A 123 AB 4 GLY B 49 ? ARG B 60 ? GLY B 112 ARG B 123 AB 5 VAL B 34 ? GLN B 45 ? VAL B 97 GLN B 108 AB 6 LEU B 26 ? LEU B 31 ? LEU B 89 LEU B 94 BA 1 MET B 3 ? LEU B 7 ? MET B 66 LEU B 70 BA 2 ARG B 11 ? ASP B 17 ? ARG B 74 ASP B 80 BA 3 VAL B 79 ? PRO B 85 ? VAL B 142 PRO B 148 BA 4 THR B 71 ? MET B 74 ? THR B 134 MET B 137 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ARG A 6 ? N ARG A 69 O SER A 13 ? O SER A 76 AA 2 3 N LEU A 16 ? N LEU A 79 O LEU A 80 ? O LEU A 143 AA 3 4 N ASN A 83 ? N ASN A 146 O THR A 71 ? O THR A 134 AB 1 2 N LEU A 31 ? N LEU A 94 O VAL A 34 ? O VAL A 97 AB 2 3 N HIS A 41 ? N HIS A 104 O ARG A 53 ? O ARG A 116 AB 3 4 N LYS A 58 ? N LYS A 121 O PHE B 50 ? O PHE B 113 AB 4 5 N TYR B 59 ? N TYR B 122 O ILE B 35 ? O ILE B 98 AB 5 6 N HIS B 38 ? N HIS B 101 O LYS B 27 ? O LYS B 90 BA 1 2 N ARG B 6 ? N ARG B 69 O SER B 13 ? O SER B 76 BA 2 3 N LEU B 16 ? N LEU B 79 O LEU B 80 ? O LEU B 143 BA 3 4 N ASN B 83 ? N ASN B 146 O THR B 71 ? O THR B 134 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE MRD A 1152' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE MPD A 1153' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MRD B 1151' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MRD B 1152' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 SER A 72 ? SER A 135 . ? 1_555 ? 2 AC1 3 SER A 73 ? SER A 136 . ? 1_555 ? 3 AC1 3 MET B 74 ? MET B 137 . ? 3_655 ? 4 AC2 3 GLU A 47 ? GLU A 110 . ? 1_555 ? 5 AC2 3 GLY A 49 ? GLY A 112 . ? 1_555 ? 6 AC2 3 PHE A 50 ? PHE A 113 . ? 1_555 ? 7 AC3 5 MET A 74 ? MET A 137 . ? 2_544 ? 8 AC3 5 SER A 75 ? SER A 138 . ? 2_544 ? 9 AC3 5 SER B 72 ? SER B 135 . ? 1_555 ? 10 AC3 5 MET B 74 ? MET B 137 . ? 1_555 ? 11 AC3 5 LEU B 80 ? LEU B 143 . ? 1_555 ? 12 AC4 4 ARG A 60 ? ARG A 123 . ? 1_555 ? 13 AC4 4 GLU B 47 ? GLU B 110 . ? 1_555 ? 14 AC4 4 HIS B 48 ? HIS B 111 . ? 1_555 ? 15 AC4 4 GLY B 49 ? GLY B 112 . ? 1_555 ? # _database_PDB_matrix.entry_id 2Y1Z _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2Y1Z _atom_sites.fract_transf_matrix[1][1] 0.016466 _atom_sites.fract_transf_matrix[1][2] 0.009507 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019014 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009985 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 64 ? ? ? A . n A 1 2 ALA 2 65 ? ? ? A . n A 1 3 MET 3 66 ? ? ? A . n A 1 4 GLU 4 67 67 GLU GLU A . n A 1 5 MET 5 68 68 MET MET A . n A 1 6 ARG 6 69 69 ARG ARG A . n A 1 7 LEU 7 70 70 LEU LEU A . n A 1 8 GLU 8 71 71 GLU GLU A . n A 1 9 LYS 9 72 72 LYS LYS A . n A 1 10 ASP 10 73 73 ASP ASP A . n A 1 11 ARG 11 74 74 ARG ARG A . n A 1 12 PHE 12 75 75 PHE PHE A . n A 1 13 SER 13 76 76 SER SER A . n A 1 14 VAL 14 77 77 VAL VAL A . n A 1 15 ASN 15 78 78 ASN ASN A . n A 1 16 LEU 16 79 79 LEU LEU A . n A 1 17 ASP 17 80 80 ASP ASP A . n A 1 18 VAL 18 81 81 VAL VAL A . n A 1 19 LYS 19 82 82 LYS LYS A . n A 1 20 HIS 20 83 83 HIS HIS A . n A 1 21 PHE 21 84 84 PHE PHE A . n A 1 22 SER 22 85 85 SER SER A . n A 1 23 PRO 23 86 86 PRO PRO A . n A 1 24 GLU 24 87 87 GLU GLU A . n A 1 25 GLU 25 88 88 GLU GLU A . n A 1 26 LEU 26 89 89 LEU LEU A . n A 1 27 LYS 27 90 90 LYS LYS A . n A 1 28 VAL 28 91 91 VAL VAL A . n A 1 29 LYS 29 92 92 LYS LYS A . n A 1 30 VAL 30 93 93 VAL VAL A . n A 1 31 LEU 31 94 94 LEU LEU A . n A 1 32 GLY 32 95 95 GLY GLY A . n A 1 33 ASP 33 96 96 ASP ASP A . n A 1 34 VAL 34 97 97 VAL VAL A . n A 1 35 ILE 35 98 98 ILE ILE A . n A 1 36 GLU 36 99 99 GLU GLU A . n A 1 37 VAL 37 100 100 VAL VAL A . n A 1 38 HIS 38 101 101 HIS HIS A . n A 1 39 GLY 39 102 102 GLY GLY A . n A 1 40 LYS 40 103 103 LYS LYS A . n A 1 41 HIS 41 104 104 HIS HIS A . n A 1 42 GLU 42 105 105 GLU GLU A . n A 1 43 GLU 43 106 106 GLU GLU A . n A 1 44 ARG 44 107 107 ARG ARG A . n A 1 45 GLN 45 108 108 GLN GLN A . n A 1 46 ASP 46 109 109 ASP ASP A . n A 1 47 GLU 47 110 110 GLU GLU A . n A 1 48 HIS 48 111 111 HIS HIS A . n A 1 49 GLY 49 112 112 GLY GLY A . n A 1 50 PHE 50 113 113 PHE PHE A . n A 1 51 ILE 51 114 114 ILE ILE A . n A 1 52 SER 52 115 115 SER SER A . n A 1 53 ARG 53 116 116 ARG ARG A . n A 1 54 GLU 54 117 117 GLU GLU A . n A 1 55 PHE 55 118 118 PHE PHE A . n A 1 56 HIS 56 119 119 HIS HIS A . n A 1 57 GLY 57 120 120 GLY GLY A . n A 1 58 LYS 58 121 121 LYS LYS A . n A 1 59 TYR 59 122 122 TYR TYR A . n A 1 60 ARG 60 123 123 ARG ARG A . n A 1 61 ILE 61 124 124 ILE ILE A . n A 1 62 PRO 62 125 125 PRO PRO A . n A 1 63 ALA 63 126 126 ALA ALA A . n A 1 64 ASP 64 127 127 ASP ASP A . n A 1 65 VAL 65 128 128 VAL VAL A . n A 1 66 ASP 66 129 129 ASP ASP A . n A 1 67 PRO 67 130 130 PRO PRO A . n A 1 68 LEU 68 131 131 LEU LEU A . n A 1 69 THR 69 132 132 THR THR A . n A 1 70 ILE 70 133 133 ILE ILE A . n A 1 71 THR 71 134 134 THR THR A . n A 1 72 SER 72 135 135 SER SER A . n A 1 73 SER 73 136 136 SER SER A . n A 1 74 MET 74 137 137 MET MET A . n A 1 75 SER 75 138 138 SER SER A . n A 1 76 SER 76 139 139 SER SER A . n A 1 77 ASP 77 140 140 ASP ASP A . n A 1 78 GLY 78 141 141 GLY GLY A . n A 1 79 VAL 79 142 142 VAL VAL A . n A 1 80 LEU 80 143 143 LEU LEU A . n A 1 81 THR 81 144 144 THR THR A . n A 1 82 VAL 82 145 145 VAL VAL A . n A 1 83 ASN 83 146 146 ASN ASN A . n A 1 84 GLY 84 147 147 GLY GLY A . n A 1 85 PRO 85 148 148 PRO PRO A . n A 1 86 ARG 86 149 149 ARG ARG A . n A 1 87 LYS 87 150 150 LYS LYS A . n A 1 88 GLN 88 151 151 GLN GLN A . n A 1 89 VAL 89 152 ? ? ? A . n A 1 90 SER 90 153 ? ? ? A . n A 1 91 GLY 91 154 ? ? ? A . n A 1 92 PRO 92 155 ? ? ? A . n A 1 93 GLU 93 156 ? ? ? A . n A 1 94 ARG 94 157 ? ? ? A . n B 1 1 GLY 1 64 64 GLY GLY B . n B 1 2 ALA 2 65 65 ALA ALA B . n B 1 3 MET 3 66 66 MET MET B . n B 1 4 GLU 4 67 67 GLU GLU B . n B 1 5 MET 5 68 68 MET MET B . n B 1 6 ARG 6 69 69 ARG ARG B . n B 1 7 LEU 7 70 70 LEU LEU B . n B 1 8 GLU 8 71 71 GLU GLU B . n B 1 9 LYS 9 72 72 LYS LYS B . n B 1 10 ASP 10 73 73 ASP ASP B . n B 1 11 ARG 11 74 74 ARG ARG B . n B 1 12 PHE 12 75 75 PHE PHE B . n B 1 13 SER 13 76 76 SER SER B . n B 1 14 VAL 14 77 77 VAL VAL B . n B 1 15 ASN 15 78 78 ASN ASN B . n B 1 16 LEU 16 79 79 LEU LEU B . n B 1 17 ASP 17 80 80 ASP ASP B . n B 1 18 VAL 18 81 81 VAL VAL B . n B 1 19 LYS 19 82 82 LYS LYS B . n B 1 20 HIS 20 83 83 HIS HIS B . n B 1 21 PHE 21 84 84 PHE PHE B . n B 1 22 SER 22 85 85 SER SER B . n B 1 23 PRO 23 86 86 PRO PRO B . n B 1 24 GLU 24 87 87 GLU GLU B . n B 1 25 GLU 25 88 88 GLU GLU B . n B 1 26 LEU 26 89 89 LEU LEU B . n B 1 27 LYS 27 90 90 LYS LYS B . n B 1 28 VAL 28 91 91 VAL VAL B . n B 1 29 LYS 29 92 92 LYS LYS B . n B 1 30 VAL 30 93 93 VAL VAL B . n B 1 31 LEU 31 94 94 LEU LEU B . n B 1 32 GLY 32 95 95 GLY GLY B . n B 1 33 ASP 33 96 96 ASP ASP B . n B 1 34 VAL 34 97 97 VAL VAL B . n B 1 35 ILE 35 98 98 ILE ILE B . n B 1 36 GLU 36 99 99 GLU GLU B . n B 1 37 VAL 37 100 100 VAL VAL B . n B 1 38 HIS 38 101 101 HIS HIS B . n B 1 39 GLY 39 102 102 GLY GLY B . n B 1 40 LYS 40 103 103 LYS LYS B . n B 1 41 HIS 41 104 104 HIS HIS B . n B 1 42 GLU 42 105 105 GLU GLU B . n B 1 43 GLU 43 106 106 GLU GLU B . n B 1 44 ARG 44 107 107 ARG ARG B . n B 1 45 GLN 45 108 108 GLN GLN B . n B 1 46 ASP 46 109 109 ASP ASP B . n B 1 47 GLU 47 110 110 GLU GLU B . n B 1 48 HIS 48 111 111 HIS HIS B . n B 1 49 GLY 49 112 112 GLY GLY B . n B 1 50 PHE 50 113 113 PHE PHE B . n B 1 51 ILE 51 114 114 ILE ILE B . n B 1 52 SER 52 115 115 SER SER B . n B 1 53 ARG 53 116 116 ARG ARG B . n B 1 54 GLU 54 117 117 GLU GLU B . n B 1 55 PHE 55 118 118 PHE PHE B . n B 1 56 HIS 56 119 119 HIS HIS B . n B 1 57 GLY 57 120 120 GLY GLY B . n B 1 58 LYS 58 121 121 LYS LYS B . n B 1 59 TYR 59 122 122 TYR TYR B . n B 1 60 ARG 60 123 123 ARG ARG B . n B 1 61 ILE 61 124 124 ILE ILE B . n B 1 62 PRO 62 125 125 PRO PRO B . n B 1 63 ALA 63 126 126 ALA ALA B . n B 1 64 ASP 64 127 127 ASP ASP B . n B 1 65 VAL 65 128 128 VAL VAL B . n B 1 66 ASP 66 129 129 ASP ASP B . n B 1 67 PRO 67 130 130 PRO PRO B . n B 1 68 LEU 68 131 131 LEU LEU B . n B 1 69 THR 69 132 132 THR THR B . n B 1 70 ILE 70 133 133 ILE ILE B . n B 1 71 THR 71 134 134 THR THR B . n B 1 72 SER 72 135 135 SER SER B . n B 1 73 SER 73 136 136 SER SER B . n B 1 74 MET 74 137 137 MET MET B . n B 1 75 SER 75 138 138 SER SER B . n B 1 76 SER 76 139 139 SER SER B . n B 1 77 ASP 77 140 140 ASP ASP B . n B 1 78 GLY 78 141 141 GLY GLY B . n B 1 79 VAL 79 142 142 VAL VAL B . n B 1 80 LEU 80 143 143 LEU LEU B . n B 1 81 THR 81 144 144 THR THR B . n B 1 82 VAL 82 145 145 VAL VAL B . n B 1 83 ASN 83 146 146 ASN ASN B . n B 1 84 GLY 84 147 147 GLY GLY B . n B 1 85 PRO 85 148 148 PRO PRO B . n B 1 86 ARG 86 149 149 ARG ARG B . n B 1 87 LYS 87 150 150 LYS LYS B . n B 1 88 GLN 88 151 ? ? ? B . n B 1 89 VAL 89 152 ? ? ? B . n B 1 90 SER 90 153 ? ? ? B . n B 1 91 GLY 91 154 ? ? ? B . n B 1 92 PRO 92 155 ? ? ? B . n B 1 93 GLU 93 156 ? ? ? B . n B 1 94 ARG 94 157 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MRD 1 1152 1152 MRD MRD A . D 3 MPD 1 1153 1153 MPD MPD A . E 2 MRD 1 1151 1151 MRD MRD B . F 2 MRD 1 1152 1152 MRD MRD B . G 4 HOH 1 2001 2001 HOH HOH A . G 4 HOH 2 2002 2002 HOH HOH A . G 4 HOH 3 2003 2003 HOH HOH A . G 4 HOH 4 2004 2004 HOH HOH A . G 4 HOH 5 2005 2005 HOH HOH A . G 4 HOH 6 2006 2006 HOH HOH A . G 4 HOH 7 2007 2007 HOH HOH A . G 4 HOH 8 2008 2008 HOH HOH A . G 4 HOH 9 2009 2009 HOH HOH A . G 4 HOH 10 2010 2010 HOH HOH A . G 4 HOH 11 2011 2011 HOH HOH A . H 4 HOH 1 2001 2001 HOH HOH B . H 4 HOH 2 2002 2002 HOH HOH B . H 4 HOH 3 2003 2003 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3270 ? 1 MORE -45.9 ? 1 'SSA (A^2)' 10020 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-03-02 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 23.8861 -12.2649 16.8092 0.0695 0.0601 0.0353 -0.0067 -0.0192 -0.0352 5.5770 2.2609 2.5683 0.3762 -1.8595 -0.6351 -0.0203 0.0410 -0.0442 0.0177 -0.0537 0.0167 0.0987 0.0169 0.0740 'X-RAY DIFFRACTION' 2 ? refined 36.8936 -10.6911 -3.1666 0.0762 0.0871 0.0696 0.0213 -0.0330 0.0339 2.0483 1.4292 1.6936 -0.7175 -1.1311 0.8062 -0.0135 0.0401 -0.0867 0.0423 -0.0278 -0.0799 -0.0595 -0.1654 0.0413 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 67 ? ? A 151 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 65 ? ? B 150 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0109 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 2Y1Z _pdbx_entry_details.compound_details ;ENGINEERED RESIDUE IN CHAIN A, ARG 120 TO HIS ENGINEERED RESIDUE IN CHAIN A, LEU 137 TO SER ENGINEERED RESIDUE IN CHAIN B, ARG 120 TO HIS ENGINEERED RESIDUE IN CHAIN B, LEU 137 TO SER ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;R120G IS A DISEASE ASSOCIATED MUTATION L137M TO ALLOW CRYSTALISATION. ALPHA-CRYSTALLIN DOMAIN ONLY. HUMAN ALPHAB CRYSTALLIN ACD(RESIDUES 67-157) ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 109 ? ? 164.80 -131.79 2 1 GLU B 110 ? ? -111.97 68.26 3 1 HIS B 111 ? ? -130.35 -45.13 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 67 ? CG ? A GLU 4 CG 2 1 Y 1 A GLU 67 ? CD ? A GLU 4 CD 3 1 Y 1 A GLU 67 ? OE1 ? A GLU 4 OE1 4 1 Y 1 A GLU 67 ? OE2 ? A GLU 4 OE2 5 1 Y 1 A LYS 90 ? CG ? A LYS 27 CG 6 1 Y 1 A LYS 90 ? CD ? A LYS 27 CD 7 1 Y 1 A LYS 90 ? CE ? A LYS 27 CE 8 1 Y 1 A LYS 90 ? NZ ? A LYS 27 NZ 9 1 Y 1 A LYS 92 ? CD ? A LYS 29 CD 10 1 Y 1 A LYS 92 ? CE ? A LYS 29 CE 11 1 Y 1 A LYS 92 ? NZ ? A LYS 29 NZ 12 1 Y 1 A LEU 94 ? CG ? A LEU 31 CG 13 1 Y 1 A LEU 94 ? CD1 ? A LEU 31 CD1 14 1 Y 1 A LEU 94 ? CD2 ? A LEU 31 CD2 15 1 Y 1 A ARG 107 ? CG ? A ARG 44 CG 16 1 Y 1 A ARG 107 ? CD ? A ARG 44 CD 17 1 Y 1 A ARG 107 ? NE ? A ARG 44 NE 18 1 Y 1 A ARG 107 ? CZ ? A ARG 44 CZ 19 1 Y 1 A ARG 107 ? NH1 ? A ARG 44 NH1 20 1 Y 1 A ARG 107 ? NH2 ? A ARG 44 NH2 21 1 Y 1 A LYS 150 ? CD ? A LYS 87 CD 22 1 Y 1 A LYS 150 ? CE ? A LYS 87 CE 23 1 Y 1 A LYS 150 ? NZ ? A LYS 87 NZ 24 1 Y 1 A GLN 151 ? CG ? A GLN 88 CG 25 1 Y 1 A GLN 151 ? CD ? A GLN 88 CD 26 1 Y 1 A GLN 151 ? OE1 ? A GLN 88 OE1 27 1 Y 1 A GLN 151 ? NE2 ? A GLN 88 NE2 28 1 Y 1 B LYS 90 ? CG ? B LYS 27 CG 29 1 Y 1 B LYS 90 ? CD ? B LYS 27 CD 30 1 Y 1 B LYS 90 ? CE ? B LYS 27 CE 31 1 Y 1 B LYS 90 ? NZ ? B LYS 27 NZ 32 1 Y 1 B LYS 92 ? CD ? B LYS 29 CD 33 1 Y 1 B LYS 92 ? CE ? B LYS 29 CE 34 1 Y 1 B LYS 92 ? NZ ? B LYS 29 NZ 35 1 Y 1 B LYS 150 ? CG ? B LYS 87 CG 36 1 Y 1 B LYS 150 ? CD ? B LYS 87 CD 37 1 Y 1 B LYS 150 ? CE ? B LYS 87 CE 38 1 Y 1 B LYS 150 ? NZ ? B LYS 87 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 64 ? A GLY 1 2 1 Y 1 A ALA 65 ? A ALA 2 3 1 Y 1 A MET 66 ? A MET 3 4 1 Y 1 A VAL 152 ? A VAL 89 5 1 Y 1 A SER 153 ? A SER 90 6 1 Y 1 A GLY 154 ? A GLY 91 7 1 Y 1 A PRO 155 ? A PRO 92 8 1 Y 1 A GLU 156 ? A GLU 93 9 1 Y 1 A ARG 157 ? A ARG 94 10 1 Y 1 B GLN 151 ? B GLN 88 11 1 Y 1 B VAL 152 ? B VAL 89 12 1 Y 1 B SER 153 ? B SER 90 13 1 Y 1 B GLY 154 ? B GLY 91 14 1 Y 1 B PRO 155 ? B PRO 92 15 1 Y 1 B GLU 156 ? B GLU 93 16 1 Y 1 B ARG 157 ? B ARG 94 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4R)-2-METHYLPENTANE-2,4-DIOL' MRD 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 water HOH # loop_ _pdbx_reflns_twin.domain_id _pdbx_reflns_twin.crystal_id _pdbx_reflns_twin.diffrn_id _pdbx_reflns_twin.type _pdbx_reflns_twin.operator _pdbx_reflns_twin.fraction 1 1 1 ? '1.000H, 1.000K, L' 0.530 2 1 1 ? '-1.000H, -1.000K, L' 0.470 #