HEADER    HYDROLASE                               14-DEC-10   2Y2C              
TITLE     CRYSTAL STRUCTURE OF AMPD APOENZYME                                   
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: 1,6-ANHYDRO-N-ACETYLMURAMYL-L-ALANINE AMIDASE AMPD;        
COMPND   3 CHAIN: A, B, C;                                                      
COMPND   4 SYNONYM: AMPD, N-ACETYLMURAMOYL-L-ALANINE AMIDASE;                   
COMPND   5 EC: 3.5.1.28;                                                        
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 OTHER_DETAILS: AMPD APOENZYME                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: CITROBACTER FREUNDII;                           
SOURCE   3 ORGANISM_TAXID: 546;                                                 
SOURCE   4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   5 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    HYDROLASE, PEPTIDOGLYCAN AMIDASE, AMIDASE_2 FAMILY, ACTIVATION        
KEYWDS   2 MECHANISM                                                            
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    C.CARRASCO-LOPEZ,A.ROJAS-ALTUVE,W.ZHANG,D.HESEK,M.LEE,S.BARBE,        
AUTHOR   2 I.ANDRE,N.SILVA-MARTIN,M.MARTINEZ-RIPOLL,S.MOBASHERY,J.A.HERMOSO     
REVDAT   3   20-DEC-23 2Y2C    1       REMARK                                   
REVDAT   2   14-SEP-11 2Y2C    1       JRNL                                     
REVDAT   1   20-JUL-11 2Y2C    0                                                
JRNL        AUTH   C.CARRASCO-LOPEZ,A.ROJAS-ALTUVE,W.ZHANG,D.HESEK,M.LEE,       
JRNL        AUTH 2 S.BARBE,I.ANDRE,P.FERRER,N.SILVA-MARTIN,G.R.CASTRO,          
JRNL        AUTH 3 M.MARTINEZ-RIPOLL,S.MOBASHERY,J.A.HERMOSO                    
JRNL        TITL   CRYSTAL STRUCTURES OF BACTERIAL PEPTIDOGLYCAN AMIDASE AMPD   
JRNL        TITL 2 AND AN UNPRECEDENTED ACTIVATION MECHANISM.                   
JRNL        REF    J.BIOL.CHEM.                  V. 286 31714 2011              
JRNL        REFN                   ISSN 0021-9258                               
JRNL        PMID   21775432                                                     
JRNL        DOI    10.1074/JBC.M111.264366                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.80 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX (PHENIX.REFINE)                               
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 36.53                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.960                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.8                           
REMARK   3   NUMBER OF REFLECTIONS             : 44489                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.192                           
REMARK   3   R VALUE            (WORKING SET) : 0.188                           
REMARK   3   FREE R VALUE                     : 0.246                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 7.100                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 3148                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 36.5379 -  3.8816    1.00     4139   325  0.1893 0.2255        
REMARK   3     2  3.8816 -  3.0815    1.00     4170   280  0.1660 0.2108        
REMARK   3     3  3.0815 -  2.6921    1.00     4143   311  0.1759 0.2380        
REMARK   3     4  2.6921 -  2.4460    1.00     4133   314  0.1762 0.2487        
REMARK   3     5  2.4460 -  2.2707    1.00     4112   317  0.1761 0.2502        
REMARK   3     6  2.2707 -  2.1369    1.00     4159   321  0.1799 0.2545        
REMARK   3     7  2.1369 -  2.0298    1.00     4127   329  0.1753 0.2424        
REMARK   3     8  2.0298 -  1.9415    1.00     4145   303  0.1924 0.2518        
REMARK   3     9  1.9415 -  1.8668    1.00     4104   363  0.2195 0.2827        
REMARK   3    10  1.8668 -  1.8023    0.98     4109   285  0.2694 0.3441        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : 0.38                                          
REMARK   3   B_SOL              : 50.12                                         
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.260            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.250           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 1.21230                                              
REMARK   3    B22 (A**2) : 1.21230                                              
REMARK   3    B33 (A**2) : -2.42470                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.007           4326                                  
REMARK   3   ANGLE     :  1.049           5916                                  
REMARK   3   CHIRALITY :  0.072            625                                  
REMARK   3   PLANARITY :  0.005            793                                  
REMARK   3   DIHEDRAL  : 16.179           1532                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2Y2C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-10.                  
REMARK 100 THE DEPOSITION ID IS D_1290046734.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 13-MAR-10                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 6.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : ESRF                               
REMARK 200  BEAMLINE                       : ID29                               
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.93340                            
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315R                  
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : SCALA                              
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 44489                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.800                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 36.400                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.0                               
REMARK 200  DATA REDUNDANCY                : 5.700                              
REMARK 200  R MERGE                    (I) : 0.13000                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 14.0000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.90                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 99.0                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 5.40                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.94000                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.000                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: PDB ENTRY 2Y28                                       
REMARK 200                                                                      
REMARK 200 REMARK: NONE                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 37.00                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 6.0, 0.1 M LI2SO4, 28%     
REMARK 280  PEG 3350                                                            
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32                             
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z+2/3                                            
REMARK 290       3555   -X+Y,-X,Z+1/3                                           
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       62.05333            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       31.02667            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1, 2, 3                                                 
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 2                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 3                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     SER A   181                                                      
REMARK 465     SER A   182                                                      
REMARK 465     HIS A   183                                                      
REMARK 465     LYS A   184                                                      
REMARK 465     GLU A   185                                                      
REMARK 465     MET A   186                                                      
REMARK 465     THR A   187                                                      
REMARK 465     PRO B   180                                                      
REMARK 465     SER B   181                                                      
REMARK 465     SER B   182                                                      
REMARK 465     HIS B   183                                                      
REMARK 465     LYS B   184                                                      
REMARK 465     GLU B   185                                                      
REMARK 465     MET B   186                                                      
REMARK 465     THR B   187                                                      
REMARK 465     MET C     1                                                      
REMARK 465     LEU C     2                                                      
REMARK 465     LEU C     3                                                      
REMARK 465     PRO C   180                                                      
REMARK 465     SER C   181                                                      
REMARK 465     SER C   182                                                      
REMARK 465     HIS C   183                                                      
REMARK 465     LYS C   184                                                      
REMARK 465     GLU C   185                                                      
REMARK 465     MET C   186                                                      
REMARK 465     THR C   187                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    HOH C  2018     O    HOH C  2155              2.19            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    LEU A   3      101.36     52.04                                   
REMARK 500    TRP A  95       79.18   -107.92                                   
REMARK 500    ARG A 161      -41.86   -137.44                                   
REMARK 500    THR A 179       79.25     38.99                                   
REMARK 500    TRP B  95       75.50   -108.30                                   
REMARK 500    GLU B 160       19.73     53.03                                   
REMARK 500    HIS C  61      141.39   -171.03                                   
REMARK 500    TRP C  95       75.51   -105.19                                   
REMARK 500    ALA C 158       52.88   -145.09                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 525                                                                      
REMARK 525 SOLVENT                                                              
REMARK 525                                                                      
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT                    
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST                  
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT                 
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE                       
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;                             
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE                  
REMARK 525 NUMBER; I=INSERTION CODE):                                           
REMARK 525                                                                      
REMARK 525  M RES CSSEQI                                                        
REMARK 525    HOH A2018        DISTANCE =  7.41 ANGSTROMS                       
REMARK 525    HOH A2028        DISTANCE =  7.09 ANGSTROMS                       
REMARK 525    HOH A2032        DISTANCE =  7.47 ANGSTROMS                       
REMARK 525    HOH A2036        DISTANCE =  6.57 ANGSTROMS                       
REMARK 525    HOH A2042        DISTANCE =  6.39 ANGSTROMS                       
REMARK 525    HOH A2070        DISTANCE =  6.18 ANGSTROMS                       
REMARK 525    HOH B2009        DISTANCE =  6.30 ANGSTROMS                       
REMARK 525    HOH B2042        DISTANCE =  6.34 ANGSTROMS                       
REMARK 525    HOH C2010        DISTANCE =  8.78 ANGSTROMS                       
REMARK 525    HOH C2014        DISTANCE =  6.76 ANGSTROMS                       
REMARK 525    HOH C2015        DISTANCE =  7.40 ANGSTROMS                       
REMARK 525    HOH C2019        DISTANCE =  5.81 ANGSTROMS                       
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1J3G   RELATED DB: PDB                                   
REMARK 900 SOLUTION STRUCTURE OF CITROBACTER FREUNDII AMPD                      
REMARK 900 RELATED ID: 2Y2E   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF AMPD GROWN AT PH 5.5                            
REMARK 900 RELATED ID: 2Y2D   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF AMPD HOLOENZYME                                 
REMARK 900 RELATED ID: 2Y28   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF SE-MET AMPD DERIVATIVE                          
REMARK 900 RELATED ID: 2Y2B   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF AMPD IN COMPLEX WITH REACTION PRODUCTS          
DBREF  2Y2C A    1   187  UNP    P82974   AMPD_CITFR       1    187             
DBREF  2Y2C B    1   187  UNP    P82974   AMPD_CITFR       1    187             
DBREF  2Y2C C    1   187  UNP    P82974   AMPD_CITFR       1    187             
SEQRES   1 A  187  MET LEU LEU ASP GLU GLY TRP LEU ALA GLU ALA ARG ARG          
SEQRES   2 A  187  VAL PRO SER PRO HIS TYR ASP CYS ARG PRO ASP ASP GLU          
SEQRES   3 A  187  ASN PRO SER LEU LEU VAL VAL HIS ASN ILE SER LEU PRO          
SEQRES   4 A  187  PRO GLY GLU PHE GLY GLY PRO TRP ILE ASP ALA LEU PHE          
SEQRES   5 A  187  THR GLY THR ILE ASP PRO ASN ALA HIS PRO TYR PHE ALA          
SEQRES   6 A  187  GLY ILE ALA HIS LEU ARG VAL SER ALA HIS CYS LEU ILE          
SEQRES   7 A  187  ARG ARG ASP GLY GLU ILE VAL GLN TYR VAL PRO PHE ASP          
SEQRES   8 A  187  LYS ARG ALA TRP HIS ALA GLY VAL SER SER TYR GLN GLY          
SEQRES   9 A  187  ARG GLU ARG CYS ASN ASP PHE SER ILE GLY ILE GLU LEU          
SEQRES  10 A  187  GLU GLY THR ASP THR LEU ALA TYR THR ASP ALA GLN TYR          
SEQRES  11 A  187  GLN GLN LEU ALA ALA VAL THR ASN ALA LEU ILE THR ARG          
SEQRES  12 A  187  TYR PRO ALA ILE ALA ASN ASN MET THR GLY HIS CYS ASN          
SEQRES  13 A  187  ILE ALA PRO GLU ARG LYS THR ASP PRO GLY PRO SER PHE          
SEQRES  14 A  187  ASP TRP ALA ARG PHE ARG ALA LEU VAL THR PRO SER SER          
SEQRES  15 A  187  HIS LYS GLU MET THR                                          
SEQRES   1 B  187  MET LEU LEU ASP GLU GLY TRP LEU ALA GLU ALA ARG ARG          
SEQRES   2 B  187  VAL PRO SER PRO HIS TYR ASP CYS ARG PRO ASP ASP GLU          
SEQRES   3 B  187  ASN PRO SER LEU LEU VAL VAL HIS ASN ILE SER LEU PRO          
SEQRES   4 B  187  PRO GLY GLU PHE GLY GLY PRO TRP ILE ASP ALA LEU PHE          
SEQRES   5 B  187  THR GLY THR ILE ASP PRO ASN ALA HIS PRO TYR PHE ALA          
SEQRES   6 B  187  GLY ILE ALA HIS LEU ARG VAL SER ALA HIS CYS LEU ILE          
SEQRES   7 B  187  ARG ARG ASP GLY GLU ILE VAL GLN TYR VAL PRO PHE ASP          
SEQRES   8 B  187  LYS ARG ALA TRP HIS ALA GLY VAL SER SER TYR GLN GLY          
SEQRES   9 B  187  ARG GLU ARG CYS ASN ASP PHE SER ILE GLY ILE GLU LEU          
SEQRES  10 B  187  GLU GLY THR ASP THR LEU ALA TYR THR ASP ALA GLN TYR          
SEQRES  11 B  187  GLN GLN LEU ALA ALA VAL THR ASN ALA LEU ILE THR ARG          
SEQRES  12 B  187  TYR PRO ALA ILE ALA ASN ASN MET THR GLY HIS CYS ASN          
SEQRES  13 B  187  ILE ALA PRO GLU ARG LYS THR ASP PRO GLY PRO SER PHE          
SEQRES  14 B  187  ASP TRP ALA ARG PHE ARG ALA LEU VAL THR PRO SER SER          
SEQRES  15 B  187  HIS LYS GLU MET THR                                          
SEQRES   1 C  187  MET LEU LEU ASP GLU GLY TRP LEU ALA GLU ALA ARG ARG          
SEQRES   2 C  187  VAL PRO SER PRO HIS TYR ASP CYS ARG PRO ASP ASP GLU          
SEQRES   3 C  187  ASN PRO SER LEU LEU VAL VAL HIS ASN ILE SER LEU PRO          
SEQRES   4 C  187  PRO GLY GLU PHE GLY GLY PRO TRP ILE ASP ALA LEU PHE          
SEQRES   5 C  187  THR GLY THR ILE ASP PRO ASN ALA HIS PRO TYR PHE ALA          
SEQRES   6 C  187  GLY ILE ALA HIS LEU ARG VAL SER ALA HIS CYS LEU ILE          
SEQRES   7 C  187  ARG ARG ASP GLY GLU ILE VAL GLN TYR VAL PRO PHE ASP          
SEQRES   8 C  187  LYS ARG ALA TRP HIS ALA GLY VAL SER SER TYR GLN GLY          
SEQRES   9 C  187  ARG GLU ARG CYS ASN ASP PHE SER ILE GLY ILE GLU LEU          
SEQRES  10 C  187  GLU GLY THR ASP THR LEU ALA TYR THR ASP ALA GLN TYR          
SEQRES  11 C  187  GLN GLN LEU ALA ALA VAL THR ASN ALA LEU ILE THR ARG          
SEQRES  12 C  187  TYR PRO ALA ILE ALA ASN ASN MET THR GLY HIS CYS ASN          
SEQRES  13 C  187  ILE ALA PRO GLU ARG LYS THR ASP PRO GLY PRO SER PHE          
SEQRES  14 C  187  ASP TRP ALA ARG PHE ARG ALA LEU VAL THR PRO SER SER          
SEQRES  15 C  187  HIS LYS GLU MET THR                                          
FORMUL   4  HOH   *682(H2 O)                                                    
HELIX    1   1 PRO A   23  GLU A   26  5                                   4    
HELIX    2   2 PRO A   46  THR A   53  1                                   8    
HELIX    3   3 HIS A   61  GLY A   66  1                                   6    
HELIX    4   4 CYS A  108  ASP A  110  5                                   3    
HELIX    5   5 THR A  126  TYR A  144  1                                  19    
HELIX    6   6 PRO A  145  ASN A  149  5                                   5    
HELIX    7   7 HIS A  154  ALA A  158  1                                   5    
HELIX    8   8 ASP A  170  VAL A  178  1                                   9    
HELIX    9   9 PRO B   23  GLU B   26  5                                   4    
HELIX   10  10 PRO B   46  THR B   53  1                                   8    
HELIX   11  11 CYS B  108  ASP B  110  5                                   3    
HELIX   12  12 THR B  126  TYR B  144  1                                  19    
HELIX   13  13 PRO B  145  ASN B  149  5                                   5    
HELIX   14  14 HIS B  154  ALA B  158  1                                   5    
HELIX   15  15 ASP B  170  VAL B  178  1                                   9    
HELIX   16  16 ARG C   22  GLU C   26  5                                   5    
HELIX   17  17 PRO C   46  THR C   53  1                                   8    
HELIX   18  18 ASP C   57  ALA C   60  5                                   4    
HELIX   19  19 HIS C   61  ALA C   68  1                                   8    
HELIX   20  20 CYS C  108  ASP C  110  5                                   3    
HELIX   21  21 THR C  126  TYR C  144  1                                  19    
HELIX   22  22 PRO C  145  ASN C  149  5                                   5    
HELIX   23  23 HIS C  154  ALA C  158  1                                   5    
HELIX   24  24 ASP C  170  LEU C  177  1                                   8    
SHEET    1  AA 6 ARG A  12  ARG A  13  0                                        
SHEET    2  AA 6 ILE A  84  GLN A  86  1  O  ILE A  84   N  ARG A  12           
SHEET    3  AA 6 CYS A  76  ILE A  78 -1  O  LEU A  77   N  VAL A  85           
SHEET    4  AA 6 SER A 112  GLU A 118  1  O  GLU A 116   N  ILE A  78           
SHEET    5  AA 6 LEU A  30  ILE A  36  1  O  LEU A  30   N  ILE A 113           
SHEET    6  AA 6 MET A 151  GLY A 153  1  O  THR A 152   N  VAL A  33           
SHEET    1  AB 2 TYR A  19  CYS A  21  0                                        
SHEET    2  AB 2 LYS A  92  ALA A  94 -1  O  ARG A  93   N  ASP A  20           
SHEET    1  AC 2 SER A 101  TYR A 102  0                                        
SHEET    2  AC 2 ARG A 105  GLU A 106 -1  O  ARG A 105   N  TYR A 102           
SHEET    1  BA 2 LEU B   3  ASP B   4  0                                        
SHEET    2  BA 2 TRP B   7  LEU B   8 -1  O  TRP B   7   N  ASP B   4           
SHEET    1  BB 6 ARG B  12  ARG B  13  0                                        
SHEET    2  BB 6 ILE B  84  GLN B  86  1  O  ILE B  84   N  ARG B  12           
SHEET    3  BB 6 CYS B  76  ILE B  78 -1  O  LEU B  77   N  VAL B  85           
SHEET    4  BB 6 SER B 112  GLU B 118  1  O  GLU B 116   N  ILE B  78           
SHEET    5  BB 6 LEU B  30  ILE B  36  1  O  LEU B  30   N  ILE B 113           
SHEET    6  BB 6 MET B 151  GLY B 153  1  O  THR B 152   N  VAL B  33           
SHEET    1  BC 2 TYR B  19  CYS B  21  0                                        
SHEET    2  BC 2 LYS B  92  ALA B  94 -1  O  ARG B  93   N  ASP B  20           
SHEET    1  BD 2 SER B 101  TYR B 102  0                                        
SHEET    2  BD 2 ARG B 105  GLU B 106 -1  O  ARG B 105   N  TYR B 102           
SHEET    1  CA 6 ARG C  12  ARG C  13  0                                        
SHEET    2  CA 6 ILE C  84  GLN C  86  1  O  ILE C  84   N  ARG C  12           
SHEET    3  CA 6 CYS C  76  ILE C  78 -1  O  LEU C  77   N  VAL C  85           
SHEET    4  CA 6 SER C 112  GLU C 118  1  O  GLU C 116   N  ILE C  78           
SHEET    5  CA 6 LEU C  30  ILE C  36  1  O  LEU C  30   N  ILE C 113           
SHEET    6  CA 6 MET C 151  GLY C 153  1  O  THR C 152   N  VAL C  33           
SHEET    1  CB 2 TYR C  19  ASP C  20  0                                        
SHEET    2  CB 2 ARG C  93  ALA C  94 -1  O  ARG C  93   N  ASP C  20           
SHEET    1  CC 2 SER C 101  TYR C 102  0                                        
SHEET    2  CC 2 ARG C 105  GLU C 106 -1  O  ARG C 105   N  TYR C 102           
CISPEP   1 LEU A   38    PRO A   39          0        -7.58                     
CISPEP   2 ASP A  164    PRO A  165          0         5.21                     
CISPEP   3 LEU B   38    PRO B   39          0       -14.39                     
CISPEP   4 ASP B  164    PRO B  165          0         6.24                     
CISPEP   5 LEU C   38    PRO C   39          0        -4.50                     
CISPEP   6 ASP C  164    PRO C  165          0         5.62                     
CRYST1   68.080   68.080   93.080  90.00  90.00 120.00 P 32          9          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.014689  0.008480  0.000000        0.00000                         
SCALE2      0.000000  0.016961  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.010743        0.00000