HEADER TRANSCRIPTION 17-DEC-10 2Y31 TITLE SIMOCYCLINONE C4 BOUND FORM OF TETR-LIKE REPRESSOR SIMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE REPRESSOR SIMREG2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 3-261; COMPND 5 SYNONYM: SIMR, SIM16; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES ANTIBIOTICUS; SOURCE 3 ORGANISM_TAXID: 1890; SOURCE 4 STRAIN: TU 6040; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET20B; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PIJ10499 KEYWDS TRANSCRIPTION, TETR-FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR T.B.K.LE,C.E.M.STEVENSON,H.-P.FIEDLER,A.MAXWELL,D.M.LAWSON, AUTHOR 2 M.J.BUTTNER REVDAT 4 20-DEC-23 2Y31 1 REMARK LINK REVDAT 3 08-MAY-19 2Y31 1 REMARK REVDAT 2 25-MAY-11 2Y31 1 JRNL REVDAT 1 09-MAR-11 2Y31 0 JRNL AUTH T.B.K.LE,C.E.M.STEVENSON,H.-P.FIEDLER,A.MAXWELL,D.M.LAWSON, JRNL AUTH 2 M.J.BUTTNER JRNL TITL STRUCTURES OF THE TETR-LIKE SIMOCYCLINONE EFFLUX PUMP JRNL TITL 2 REPRESSOR, SIMR, AND THE MECHANISM OF LIGAND-MEDIATED JRNL TITL 3 DEREPRESSION. JRNL REF J.MOL.BIOL. V. 408 40 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21354180 JRNL DOI 10.1016/J.JMB.2011.02.035 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0091 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 32723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1726 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2388 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3748 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 139 REMARK 3 SOLVENT ATOMS : 277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.67000 REMARK 3 B22 (A**2) : -0.67000 REMARK 3 B33 (A**2) : 1.00000 REMARK 3 B12 (A**2) : -0.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.242 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.210 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.849 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4050 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2820 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5535 ; 1.576 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6659 ; 0.926 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 487 ; 5.370 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;33.090 ;22.381 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 639 ;14.398 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 47 ;20.904 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 593 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4467 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 848 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2390 ; 0.912 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 962 ; 0.195 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3848 ; 1.729 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1660 ; 2.657 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1674 ; 4.369 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 2Y31 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1290046771. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34449 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 63.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2Y2Z REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOUR DIFFUSION. PROTEIN REMARK 280 AT 5MG/ML PLUS EXCESS LIGAND IN 25MM TRIS-HCL PH8.4, 300MM NACL REMARK 280 MIXED WITH 28% PEG 400, 0.2M CALCIUM CHLORIDE 0.1M HEPES PH7.5 REMARK 280 IN 1 TO 1 RATIO, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 233.24067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 116.62033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 174.93050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.31017 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 291.55083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 233.24067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 116.62033 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 58.31017 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 174.93050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 291.55083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLU A 3 REMARK 465 ASN A 4 REMARK 465 GLU A 5 REMARK 465 GLY A 248 REMARK 465 ARG A 249 REMARK 465 SER A 250 REMARK 465 ALA A 251 REMARK 465 ALA A 252 REMARK 465 SER A 253 REMARK 465 GLU A 254 REMARK 465 ARG A 255 REMARK 465 PRO A 256 REMARK 465 ALA A 257 REMARK 465 LEU A 258 REMARK 465 ALA A 259 REMARK 465 LEU A 260 REMARK 465 GLU A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 HIS A 266 REMARK 465 HIS A 267 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 GLU B 3 REMARK 465 ASN B 4 REMARK 465 ALA B 16 REMARK 465 GLY B 17 REMARK 465 ARG B 18 REMARK 465 ARG B 19 REMARK 465 SER B 20 REMARK 465 ALA B 21 REMARK 465 ARG B 22 REMARK 465 SER B 23 REMARK 465 HIS B 24 REMARK 465 ARG B 25 REMARK 465 PRO B 247 REMARK 465 GLY B 248 REMARK 465 ARG B 249 REMARK 465 SER B 250 REMARK 465 ALA B 251 REMARK 465 ALA B 252 REMARK 465 SER B 253 REMARK 465 GLU B 254 REMARK 465 ARG B 255 REMARK 465 PRO B 256 REMARK 465 ALA B 257 REMARK 465 LEU B 258 REMARK 465 ALA B 259 REMARK 465 LEU B 260 REMARK 465 GLU B 261 REMARK 465 HIS B 262 REMARK 465 HIS B 263 REMARK 465 HIS B 264 REMARK 465 HIS B 265 REMARK 465 HIS B 266 REMARK 465 HIS B 267 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 18 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 227 CD NE CZ NH1 NH2 REMARK 470 ARG B 243 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 122 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 MET B 50 CG - SD - CE ANGL. DEV. = -13.4 DEGREES REMARK 500 ARG B 122 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 128 43.43 -97.73 REMARK 500 PRO B 13 138.68 -39.07 REMARK 500 TRP B 128 47.23 -109.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 POLYETHYLENE GLYCOL (PG4): COMPONENT OF PRECIPITANT. REMARK 600 SIMOCYCLINONE C4 (SMQ): ADDED TO PROTEIN PRIOR TO REMARK 600 CRYSTALLIZATION REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 1249 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1247 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 244 O REMARK 620 2 HOH A2088 O 84.2 REMARK 620 3 HOH A2090 O 127.5 71.6 REMARK 620 4 ASP B 235 OD1 76.4 116.0 156.1 REMARK 620 5 ASP B 235 OD2 93.9 70.8 119.0 50.9 REMARK 620 6 HOH B2040 O 85.2 154.5 97.1 83.8 133.1 REMARK 620 7 HOH B2041 O 133.4 134.4 94.0 64.2 80.4 67.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SMQ A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SMQ B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 1248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 1249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1250 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1251 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1251 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1252 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1252 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Y2Z RELATED DB: PDB REMARK 900 LIGAND-FREE FORM OF TETR-LIKE REPRESSOR SIMR REMARK 900 RELATED ID: 2Y30 RELATED DB: PDB REMARK 900 SIMOCYCLINONE D8 BOUND FORM OF TETR-LIKE REPRESSOR SIMR DBREF 2Y31 A 1 259 UNP Q9AMH9 Q9AMH9_STRAT 3 261 DBREF 2Y31 B 1 259 UNP Q9AMH9 Q9AMH9_STRAT 3 261 SEQADV 2Y31 LEU A 260 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y31 GLU A 261 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y31 HIS A 262 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y31 HIS A 263 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y31 HIS A 264 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y31 HIS A 265 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y31 HIS A 266 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y31 HIS A 267 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y31 LEU B 260 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y31 GLU B 261 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y31 HIS B 262 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y31 HIS B 263 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y31 HIS B 264 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y31 HIS B 265 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y31 HIS B 266 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y31 HIS B 267 UNP Q9AMH9 EXPRESSION TAG SEQRES 1 A 267 MET ASN GLU ASN GLU PRO VAL SER ILE TRP MET HIS PRO SEQRES 2 A 267 GLU PRO ALA GLY ARG ARG SER ALA ARG SER HIS ARG THR SEQRES 3 A 267 LEU SER ARG ASP GLN ILE VAL ARG ALA ALA VAL LYS VAL SEQRES 4 A 267 ALA ASP THR GLU GLY VAL GLU ALA ALA SER MET ARG ARG SEQRES 5 A 267 VAL ALA ALA GLU LEU GLY ALA GLY THR MET SER LEU TYR SEQRES 6 A 267 TYR TYR VAL PRO THR LYS GLU ASP LEU VAL GLU LEU MET SEQRES 7 A 267 VAL ASP GLU VAL ILE GLY GLU THR ARG LEU PRO ASP ARG SEQRES 8 A 267 PRO GLY PRO ASP TRP ARG ALA ALA LEU THR LEU ALA ALA SEQRES 9 A 267 ASN GLU LYS ARG ALA LEU TRP LEU ARG HIS PRO TRP LEU SEQRES 10 A 267 ALA THR ALA TRP ARG ASN GLY HIS PRO VAL TRP GLY PRO SEQRES 11 A 267 ASN SER LEU ARG GLN GLN GLU PHE VAL LEU GLY THR LEU SEQRES 12 A 267 GLY VAL PHE ASP LEU GLN VAL ASP GLU LEU LEU SER LEU SEQRES 13 A 267 ILE GLY LEU TYR ASN GLY TYR VAL GLU SER PHE VAL ARG SEQRES 14 A 267 ASN GLU VAL GLY TRP LEU GLU GLU ALA ARG ARG THR LYS SEQRES 15 A 267 VAL ASP MET ARG GLU TRP MET ARG ARG SER GLY PRO TYR SEQRES 16 A 267 ALA GLN GLN LEU VAL ASP SER GLY GLU TYR PRO MET PHE SEQRES 17 A 267 ALA ARG VAL LEU ALA GLU THR VAL ALA PRO HIS MET GLY SEQRES 18 A 267 PRO ASP GLN ARG PHE ARG SER GLY LEU GLU ARG LEU LEU SEQRES 19 A 267 ASP SER ILE GLY ALA SER LEU ASP ARG LEU SER PRO PRO SEQRES 20 A 267 GLY ARG SER ALA ALA SER GLU ARG PRO ALA LEU ALA LEU SEQRES 21 A 267 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 267 MET ASN GLU ASN GLU PRO VAL SER ILE TRP MET HIS PRO SEQRES 2 B 267 GLU PRO ALA GLY ARG ARG SER ALA ARG SER HIS ARG THR SEQRES 3 B 267 LEU SER ARG ASP GLN ILE VAL ARG ALA ALA VAL LYS VAL SEQRES 4 B 267 ALA ASP THR GLU GLY VAL GLU ALA ALA SER MET ARG ARG SEQRES 5 B 267 VAL ALA ALA GLU LEU GLY ALA GLY THR MET SER LEU TYR SEQRES 6 B 267 TYR TYR VAL PRO THR LYS GLU ASP LEU VAL GLU LEU MET SEQRES 7 B 267 VAL ASP GLU VAL ILE GLY GLU THR ARG LEU PRO ASP ARG SEQRES 8 B 267 PRO GLY PRO ASP TRP ARG ALA ALA LEU THR LEU ALA ALA SEQRES 9 B 267 ASN GLU LYS ARG ALA LEU TRP LEU ARG HIS PRO TRP LEU SEQRES 10 B 267 ALA THR ALA TRP ARG ASN GLY HIS PRO VAL TRP GLY PRO SEQRES 11 B 267 ASN SER LEU ARG GLN GLN GLU PHE VAL LEU GLY THR LEU SEQRES 12 B 267 GLY VAL PHE ASP LEU GLN VAL ASP GLU LEU LEU SER LEU SEQRES 13 B 267 ILE GLY LEU TYR ASN GLY TYR VAL GLU SER PHE VAL ARG SEQRES 14 B 267 ASN GLU VAL GLY TRP LEU GLU GLU ALA ARG ARG THR LYS SEQRES 15 B 267 VAL ASP MET ARG GLU TRP MET ARG ARG SER GLY PRO TYR SEQRES 16 B 267 ALA GLN GLN LEU VAL ASP SER GLY GLU TYR PRO MET PHE SEQRES 17 B 267 ALA ARG VAL LEU ALA GLU THR VAL ALA PRO HIS MET GLY SEQRES 18 B 267 PRO ASP GLN ARG PHE ARG SER GLY LEU GLU ARG LEU LEU SEQRES 19 B 267 ASP SER ILE GLY ALA SER LEU ASP ARG LEU SER PRO PRO SEQRES 20 B 267 GLY ARG SER ALA ALA SER GLU ARG PRO ALA LEU ALA LEU SEQRES 21 B 267 GLU HIS HIS HIS HIS HIS HIS HET SMQ A 501 52 HET 1PE A1248 16 HET PG4 A1249 10 HET CL A1250 1 HET CL A1251 1 HET CL A1252 1 HET SMQ B 501 52 HET CA B1247 1 HET CL B1248 1 HET CL B1249 1 HET CL B1250 1 HET CL B1251 1 HET CL B1252 1 HETNAM SMQ SIMOCYCLINONE C4 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETSYN 1PE PEG400 FORMUL 3 SMQ 2(C37 H38 O15) FORMUL 4 1PE C10 H22 O6 FORMUL 5 PG4 C8 H18 O5 FORMUL 6 CL 8(CL 1-) FORMUL 10 CA CA 2+ FORMUL 16 HOH *277(H2 O) HELIX 1 1 SER A 28 GLY A 44 1 17 HELIX 2 2 SER A 49 GLY A 58 1 10 HELIX 3 3 GLY A 60 TYR A 65 1 6 HELIX 4 4 THR A 70 GLY A 84 1 15 HELIX 5 5 ASP A 95 HIS A 114 1 20 HELIX 6 6 PRO A 115 THR A 119 5 5 HELIX 7 7 GLY A 129 THR A 142 1 14 HELIX 8 8 GLN A 149 LYS A 182 1 34 HELIX 9 9 ASP A 184 SER A 192 1 9 HELIX 10 10 SER A 192 SER A 202 1 11 HELIX 11 11 TYR A 205 THR A 215 1 11 HELIX 12 12 VAL A 216 MET A 220 5 5 HELIX 13 13 GLY A 221 SER A 245 1 25 HELIX 14 14 SER B 8 HIS B 12 5 5 HELIX 15 15 SER B 28 GLY B 44 1 17 HELIX 16 16 VAL B 45 ALA B 48 5 4 HELIX 17 17 SER B 49 LEU B 57 1 9 HELIX 18 18 THR B 61 TYR B 65 5 5 HELIX 19 19 THR B 70 GLY B 84 1 15 HELIX 20 20 ASP B 95 HIS B 114 1 20 HELIX 21 21 PRO B 115 THR B 119 5 5 HELIX 22 22 GLY B 129 THR B 142 1 14 HELIX 23 23 GLN B 149 LYS B 182 1 34 HELIX 24 24 ASP B 184 SER B 192 1 9 HELIX 25 25 SER B 192 SER B 202 1 11 HELIX 26 26 TYR B 205 THR B 215 1 11 HELIX 27 27 VAL B 216 MET B 220 5 5 HELIX 28 28 GLY B 221 SER B 245 1 25 LINK O LEU A 244 CA CA B1247 8555 1555 2.36 LINK O HOH A2088 CA CA B1247 8555 1555 2.49 LINK O HOH A2090 CA CA B1247 8555 1555 2.03 LINK OD1 ASP B 235 CA CA B1247 1555 1555 2.79 LINK OD2 ASP B 235 CA CA B1247 1555 1555 2.39 LINK CA CA B1247 O HOH B2040 1555 1555 2.30 LINK CA CA B1247 O HOH B2041 1555 1555 2.57 CISPEP 1 PRO A 246 PRO A 247 0 -0.25 SITE 1 AC1 15 MET A 185 MET A 189 GLY A 193 GLN A 197 SITE 2 AC1 15 LEU A 212 HIS A 219 HOH A2140 HOH A2166 SITE 3 AC1 15 HOH A2168 PRO B 126 GLN B 135 GLN B 136 SITE 4 AC1 15 LEU B 154 ASN B 161 HOH B2057 SITE 1 AC2 14 LYS A 107 PRO A 126 GLN A 135 GLN A 136 SITE 2 AC2 14 LEU A 154 ASN A 161 HOH A2097 MET B 189 SITE 3 AC2 14 GLY B 193 GLN B 197 LEU B 212 PRO B 218 SITE 4 AC2 14 HIS B 219 HOH B2099 SITE 1 AC3 8 ARG A 232 ASP A 235 SER A 236 HOH A2159 SITE 2 AC3 8 HOH A2169 SER B 240 ARG B 243 LEU B 244 SITE 1 AC4 7 LEU A 88 PRO A 89 ASP A 90 ARG A 134 SITE 2 AC4 7 GLU A 137 PHE A 138 HOH A2045 SITE 1 AC5 6 LEU A 244 HOH A2088 HOH A2090 ASP B 235 SITE 2 AC5 6 HOH B2040 HOH B2041 SITE 1 AC6 6 HOH A2073 GLY B 44 VAL B 45 TRP B 116 SITE 2 AC6 6 HOH B2018 HOH B2053 SITE 1 AC7 2 LYS B 71 HOH B2024 SITE 1 AC8 2 MET B 185 HOH B2092 SITE 1 AC9 5 TRP A 174 ASP A 184 MET A 185 HOH A2106 SITE 2 AC9 5 HOH A2120 SITE 1 BC1 3 MET B 50 HOH B2020 HOH B2024 SITE 1 BC2 4 GLY A 44 VAL A 45 HOH A2018 HOH B2056 SITE 1 BC3 3 GLY B 221 ASP B 223 GLN B 224 SITE 1 BC4 4 GLY A 221 ASP A 223 GLN A 224 HOH A2145 CRYST1 86.570 86.570 349.861 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011551 0.006669 0.000000 0.00000 SCALE2 0.000000 0.013338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002858 0.00000