HEADER UNKNOWN FUNCTION 20-DEC-10 2Y3C TITLE TREPONEMA DENTICOLA VARIABLE PROTEIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TREPONEMA DENTICOLA VARIABLE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 39-329; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: DISUFIDE BOND BETWEEN C318 SIDE CHAIN AND COMPND 7 BETA-MERCAPTOETHANOL. C318 WAS REPLACED BY A MODIFIED AMINO ACID COMPND 8 CME318. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TREPONEMA DENTICOLA; SOURCE 3 ORGANISM_TAXID: 158; SOURCE 4 STRAIN: 35405; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28B KEYWDS UNKNOWN FUNCTION, PERIODONTAL DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LE COQ,P.GHOSH REVDAT 2 02-NOV-11 2Y3C 1 JRNL REVDAT 1 31-AUG-11 2Y3C 0 JRNL AUTH J.LE COQ,P.GHOSH JRNL TITL CONSERVATION OF THE C-TYPE LECTIN FOLD FOR MASSIVE SEQUENCE JRNL TITL 2 VARIATION IN A TREPONEMA DIVERSITY-GENERATING RETROELEMENT. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 14649 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21873231 JRNL DOI 10.1073/PNAS.1105613108 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.92 REMARK 3 NUMBER OF REFLECTIONS : 54391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.14750 REMARK 3 R VALUE (WORKING SET) : 0.14619 REMARK 3 FREE R VALUE : 0.17240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 2878 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.400 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.436 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3974 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.177 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.4 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.486 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10 REMARK 3 B22 (A**2) : -0.03 REMARK 3 B33 (A**2) : -0.07 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.547 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2416 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3323 ; 1.096 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 331 ; 6.011 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;30.999 ;25.299 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 373 ;12.265 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;11.375 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 339 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1959 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1494 ; 0.685 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2400 ; 1.204 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 922 ; 1.807 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 895 ; 2.690 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2416 ; 0.763 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. LIBRARY FOR THE MODIFIED C318 LABELLED REMARK 3 CME WAS CREATED IN PRODRG2 AND THERE ARE NUMEROUS AMINO REMARK 3 ACIDS WITH ALTERNATE CONFORMATIONS INCLUDING CME318. REMARK 4 REMARK 4 2Y3C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-DEC-10. REMARK 100 THE PDBE ID CODE IS EBI-46765. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57216 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.40 REMARK 200 RESOLUTION RANGE LOW (A) : 44.46 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.2 REMARK 200 R MERGE (I) : 0.11 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.50 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.0 REMARK 200 R MERGE FOR SHELL (I) : 0.31 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BICINE, PH 7, 2.7-3M REMARK 280 SODIUM ACETATE, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.69650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.45850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.81450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.45850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.69650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.81450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 36 REMARK 465 SER A 37 REMARK 465 HIS A 38 REMARK 465 LYS A 39 REMARK 465 SER A 40 REMARK 465 GLY A 41 REMARK 465 GLY A 42 REMARK 465 GLY A 43 REMARK 465 GLU A 44 REMARK 465 SER A 45 REMARK 465 SER A 46 REMARK 465 GLU A 47 REMARK 465 VAL A 48 REMARK 465 THR A 49 REMARK 465 PRO A 50 REMARK 465 ASN A 51 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 232 -169.45 -127.86 REMARK 500 ASN A 259 -88.61 72.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1340 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 258 O REMARK 620 2 VAL A 260 O 86.3 REMARK 620 3 GLU A 101 OE2 93.1 83.7 REMARK 620 4 GLU A 262 OE2 163.8 99.7 72.7 REMARK 620 5 ASP A 255 O 87.8 168.7 87.1 83.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1341 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 258 O REMARK 620 2 VAL A 260 O 78.9 REMARK 620 3 ILE A 256 O 121.0 158.6 REMARK 620 4 GLU A 262 OE2 120.3 82.2 92.8 REMARK 620 5 ASP A 255 O 77.2 123.7 72.4 67.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1339 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2145 O REMARK 620 2 HOH A2037 O 135.0 REMARK 620 3 HOH A2247 O 103.8 105.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1338 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A1339 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1340 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1341 DBREF 2Y3C A 39 329 UNP Q73KE9 Q73KE9_TREDE 39 329 SEQADV 2Y3C GLY A 36 UNP Q73KE9 EXPRESSION TAG SEQADV 2Y3C SER A 37 UNP Q73KE9 EXPRESSION TAG SEQADV 2Y3C HIS A 38 UNP Q73KE9 EXPRESSION TAG SEQRES 1 A 294 GLY SER HIS LYS SER GLY GLY GLY GLU SER SER GLU VAL SEQRES 2 A 294 THR PRO ASN THR PRO VAL ASP LYS THR TYR THR VAL GLY SEQRES 3 A 294 SER VAL GLU PHE THR MET LYS GLY ILE ALA ALA VAL ASN SEQRES 4 A 294 ALA GLN LEU GLY HIS ASN ASP TYR SER ILE ASN GLN PRO SEQRES 5 A 294 HIS THR VAL SER LEU SER ALA TYR LEU ILE GLY GLU THR SEQRES 6 A 294 GLU VAL THR GLN GLU LEU TRP GLN ALA VAL MET GLY ASN SEQRES 7 A 294 ASN PRO SER HIS PHE ASN GLY SER PRO ALA VAL GLY GLU SEQRES 8 A 294 THR GLN GLY LYS ARG PRO VAL GLU ASN VAL ASN TRP TYR SEQRES 9 A 294 GLN ALA ILE ALA PHE CYS ASN LYS LEU SER ILE LYS LEU SEQRES 10 A 294 ASN LEU GLU PRO CYS TYR THR VAL ASN VAL GLY GLY ASN SEQRES 11 A 294 PRO VAL ASP PHE ALA ALA LEU SER PHE ASP GLN ILE PRO SEQRES 12 A 294 ASP SER ASN ASN ALA ASP TRP ASP LYS ALA GLU LEU ASP SEQRES 13 A 294 ILE ASN LYS LYS GLY PHE ARG LEU PRO THR GLU ALA GLU SEQRES 14 A 294 TRP GLU TRP ALA ALA LYS GLY GLY THR ASP ASP LYS TRP SEQRES 15 A 294 SER GLY THR ASN THR GLU ALA GLU LEU LYS ASN TYR ALA SEQRES 16 A 294 TRP TYR GLY SER ASN SER GLY SER LYS THR HIS GLU VAL SEQRES 17 A 294 LYS LYS LYS LYS PRO ASN TRP TYR GLY LEU TYR ASP ILE SEQRES 18 A 294 ALA GLY ASN VAL ALA GLU TRP CYS TRP ASP TRP ARG ALA SEQRES 19 A 294 ASP ILE HIS THR GLY ASP SER PHE PRO GLN ASP TYR PRO SEQRES 20 A 294 GLY PRO ALA SER GLY SER GLY ARG VAL LEU ARG GLY GLY SEQRES 21 A 294 SER TRP ALA GLY SER ALA ASP TYR CYS ALA VAL GLY GLU SEQRES 22 A 294 ARG VAL ASN ILE SER PRO GLY VAL ARG CME SER ASP LEU SEQRES 23 A 294 GLY PHE ARG LEU ALA CYS ARG PRO MODRES 2Y3C CME A 318 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE HET CME A 318 17 HET ACT A1330 4 HET ACT A1331 4 HET ACT A1332 4 HET ACT A1333 4 HET ACT A1334 4 HET ACT A1335 4 HET ACT A1336 4 HET ACT A1337 4 HET ACT A1338 4 HET NA A1339 1 HET CA A1340 1 HET CA A1341 1 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM ACT ACETATE ION HETNAM NA SODIUM ION HETNAM CA CALCIUM ION FORMUL 2 CME C5 H11 N O3 S2 FORMUL 3 ACT 9(C2 H3 O2 1-) FORMUL 4 NA NA 1+ FORMUL 5 CA 2(CA 2+) FORMUL 6 HOH *256(H2 O) HELIX 1 1 THR A 103 GLY A 112 1 10 HELIX 2 2 THR A 127 ARG A 131 5 5 HELIX 3 3 ASN A 137 LEU A 152 1 16 HELIX 4 4 SER A 173 ILE A 177 5 5 HELIX 5 5 ASN A 182 LYS A 187 1 6 HELIX 6 6 THR A 201 GLY A 211 1 11 HELIX 7 7 THR A 222 LYS A 227 1 6 HELIX 8 8 ALA A 301 ALA A 305 5 5 SHEET 1 AA 4 LYS A 56 VAL A 60 0 SHEET 2 AA 4 VAL A 63 ILE A 70 -1 O VAL A 63 N VAL A 60 SHEET 3 AA 4 TYR A 95 GLY A 98 -1 O TYR A 95 N ILE A 70 SHEET 4 AA 4 ALA A 326 CYS A 327 -1 O CYS A 327 N LEU A 96 SHEET 1 AB 2 VAL A 73 LEU A 77 0 SHEET 2 AB 2 HIS A 88 LEU A 92 -1 O HIS A 88 N LEU A 77 SHEET 1 AC 2 TYR A 158 THR A 159 0 SHEET 2 AC 2 GLU A 189 LEU A 190 -1 O GLU A 189 N THR A 159 SHEET 1 AD 2 ASN A 161 VAL A 162 0 SHEET 2 AD 2 ASN A 165 PRO A 166 -1 O ASN A 165 N VAL A 162 SHEET 1 AE 4 VAL A 310 ILE A 312 0 SHEET 2 AE 4 ARG A 290 ARG A 293 -1 O ARG A 290 N ILE A 312 SHEET 3 AE 4 ALA A 261 TRP A 267 -1 O GLU A 262 N ARG A 293 SHEET 4 AE 4 LEU A 321 GLY A 322 1 O GLY A 322 N TRP A 263 LINK C ARG A 317 N CME A 318 1555 1555 1.33 LINK C CME A 318 N SER A 319 1555 1555 1.33 LINK NA NA A1339 O HOH A2247 1555 1555 2.69 LINK NA NA A1339 O HOH A2037 1555 1555 2.74 LINK NA NA A1339 O HOH A2145 1555 1555 2.85 LINK CA CA A1340 OE2 GLU A 262 1555 1555 2.47 LINK CA CA A1340 O ASP A 255 1555 1555 2.39 LINK CA CA A1340 O GLY A 258 1555 1555 2.43 LINK CA CA A1340 O VAL A 260 1555 1555 2.40 LINK CA CA A1340 OE2 GLU A 101 1555 1555 2.24 LINK CA CA A1341 O ASP A 255 1555 1555 2.78 LINK CA CA A1341 OE2 GLU A 262 1555 1555 3.02 LINK CA CA A1341 O ILE A 256 1555 1555 2.95 LINK CA CA A1341 O VAL A 260 1555 1555 2.63 LINK CA CA A1341 O GLY A 258 1555 1555 2.57 SITE 1 AC1 6 PRO A 178 SER A 180 ASN A 181 ASN A 182 SITE 2 AC1 6 TYR A 254 HOH A2116 SITE 1 AC2 2 HOH A2245 HOH A2246 SITE 1 AC3 5 HIS A 79 TYR A 82 LYS A 216 HOH A2036 SITE 2 AC3 5 HOH A2247 SITE 1 AC4 6 SER A 300 ACT A1338 HOH A2248 HOH A2249 SITE 2 AC4 6 HOH A2250 HOH A2251 SITE 1 AC5 6 THR A 222 GLU A 223 ALA A 224 CME A 318 SITE 2 AC5 6 SER A 319 HOH A2252 SITE 1 AC6 8 SER A 234 ASN A 235 TYR A 303 VAL A 310 SITE 2 AC6 8 ILE A 312 HOH A2228 HOH A2253 HOH A2254 SITE 1 AC7 3 VAL A 167 ASP A 168 HOH A2106 SITE 1 AC8 3 THR A 59 GLY A 61 LYS A 151 SITE 1 AC9 5 LYS A 247 SER A 313 ACT A1333 HOH A2255 SITE 2 AC9 5 HOH A2256 SITE 1 BC1 4 VAL A 306 HOH A2037 HOH A2145 HOH A2247 SITE 1 BC2 7 GLU A 101 ASP A 255 ILE A 256 GLY A 258 SITE 2 BC2 7 VAL A 260 GLU A 262 CA A1341 SITE 1 BC3 9 GLU A 101 ASP A 255 ILE A 256 GLY A 258 SITE 2 BC3 9 VAL A 260 GLU A 262 GLY A 294 GLY A 295 SITE 3 BC3 9 CA A1340 CRYST1 41.393 77.629 88.917 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024159 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012882 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011246 0.00000