data_2Y3Y # _entry.id 2Y3Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.312 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2Y3Y PDBE EBI-46876 WWPDB D_1290046876 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2CAJ unspecified 'NI2-HPNIKR HPNIKR IN CLOSED TRANS- CONFORMATION AND NICKEL BOUND TO 4 INTERMEDIARY SITES' PDB 2WVB unspecified 'STRUCTURAL AND MECHANISTIC INSIGHTS INTO HELICOBACTER PYLORI NIKR FUNCTION' PDB 2WVD unspecified 'STRUCTURAL AND MECHANISTIC INSIGHTS INTO HELICOBACTER PYLORI NIKR FUNCTION' PDB 2CA9 unspecified 'APO-NIKR FROM HELICOBACTER PYLORI IN CLOSED TRANS-CONFORMATION' PDB 2WVE unspecified 'STRUCTURAL AND MECHANISTIC INSIGHTS INTO HELICOBACTER PYLORI NIKR FUNCTION' PDB 2WVF unspecified 'STRUCTURAL AND MECHANISTIC INSIGHTS INTO HELICOBACTER PYLORI NIKR FUNCTION' PDB 2WVC unspecified 'STRUCTURAL AND MECHANISTIC INSIGHTS INTO HELICOBACTER PYLORI NIKR FUNCTION' PDB 2CAD unspecified 'NIKR FROM HELICOBACTER PYLORI IN CLOSED TRANS-CONFORMATION AND NICKEL BOUND TO 2F, 2X AND 2I SITES' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Y3Y _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-01-04 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Benini, S.' 1 'Cianci, M.' 2 'Ciurli, S.' 3 # _citation.id primary _citation.title 'Holo-Ni(2+)Helicobacter Pylori Nikr Contains Four Square-Planar Nickel-Binding Sites at Physiological Ph.' _citation.journal_abbrev 'Dalton Trans' _citation.journal_volume 40 _citation.page_first 7831 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1477-9226 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21725560 _citation.pdbx_database_id_DOI 10.1039/C1DT11107H # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Benini, S.' 1 ? primary 'Cianci, M.' 2 ? primary 'Ciurli, S.' 3 ? # _cell.entry_id 2Y3Y _cell.length_a 72.970 _cell.length_b 72.970 _cell.length_c 116.730 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y3Y _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PUTATIVE NICKEL-RESPONSIVE REGULATOR' 10428.796 4 ? ? 'C-TERMINAL METAL-BINDING DOMAIN, RESIDUES 58-145' ? 2 polymer nat UNDECAPEPTIDE-GSSSGSASGAG 823.767 1 ? ? ? ? 3 non-polymer syn 'NICKEL (II) ION' 58.693 4 ? ? ? ? 4 non-polymer syn '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 238.305 2 ? ? ? ? 5 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 3 ? ? ? ? 6 water nat water 18.015 66 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'HOLO-NICKEL HPNIKR' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;NPNDESKIAVLVVIYDHHQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAK LTKASSFEHNE ; ;NPNDESKIAVLVVIYDHHQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAK LTKASSFEHNE ; A,B,C,D ? 2 'polypeptide(L)' no no GSSSGSASGAG GSSSGSASGAG Q ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 PRO n 1 3 ASN n 1 4 ASP n 1 5 GLU n 1 6 SER n 1 7 LYS n 1 8 ILE n 1 9 ALA n 1 10 VAL n 1 11 LEU n 1 12 VAL n 1 13 VAL n 1 14 ILE n 1 15 TYR n 1 16 ASP n 1 17 HIS n 1 18 HIS n 1 19 GLN n 1 20 ARG n 1 21 GLU n 1 22 LEU n 1 23 ASN n 1 24 GLN n 1 25 ARG n 1 26 MET n 1 27 ILE n 1 28 ASP n 1 29 ILE n 1 30 GLN n 1 31 HIS n 1 32 ALA n 1 33 SER n 1 34 GLY n 1 35 THR n 1 36 HIS n 1 37 VAL n 1 38 LEU n 1 39 CYS n 1 40 THR n 1 41 THR n 1 42 HIS n 1 43 ILE n 1 44 HIS n 1 45 MET n 1 46 ASP n 1 47 GLU n 1 48 HIS n 1 49 ASN n 1 50 CYS n 1 51 LEU n 1 52 GLU n 1 53 THR n 1 54 ILE n 1 55 ILE n 1 56 LEU n 1 57 GLN n 1 58 GLY n 1 59 ASN n 1 60 SER n 1 61 PHE n 1 62 GLU n 1 63 ILE n 1 64 GLN n 1 65 ARG n 1 66 LEU n 1 67 GLN n 1 68 LEU n 1 69 GLU n 1 70 ILE n 1 71 GLY n 1 72 GLY n 1 73 LEU n 1 74 ARG n 1 75 GLY n 1 76 VAL n 1 77 LYS n 1 78 PHE n 1 79 ALA n 1 80 LYS n 1 81 LEU n 1 82 THR n 1 83 LYS n 1 84 ALA n 1 85 SER n 1 86 SER n 1 87 PHE n 1 88 GLU n 1 89 HIS n 1 90 ASN n 1 91 GLU n 2 1 GLY n 2 2 SER n 2 3 SER n 2 4 SER n 2 5 GLY n 2 6 SER n 2 7 ALA n 2 8 SER n 2 9 GLY n 2 10 ALA n 2 11 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HELICOBACTER PYLORI G27' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 563041 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector PET22B _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific UNIDENTIFIED _entity_src_nat.pdbx_ncbi_taxonomy_id 32644 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP NIKR_HELPG 1 ? ? B5Z8Y5 ? 2 PDB 2Y3Y 2 ? ? 2Y3Y ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2Y3Y A 1 ? 91 ? B5Z8Y5 58 ? 148 ? 58 148 2 1 2Y3Y B 1 ? 91 ? B5Z8Y5 58 ? 148 ? 58 148 3 1 2Y3Y C 1 ? 91 ? B5Z8Y5 58 ? 148 ? 58 148 4 1 2Y3Y D 1 ? 91 ? B5Z8Y5 58 ? 148 ? 58 148 5 2 2Y3Y Q 1 ? 11 ? 2Y3Y 1 ? 11 ? 1 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EPE non-polymer . '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' HEPES 'C8 H18 N2 O4 S' 238.305 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2Y3Y _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.05 _exptl_crystal.density_percent_sol 69.64 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.3 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '20% PEG 3350 AND 0.2 M K/NA-TARTRATE, pH 7.3' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2010-12-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.459 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X12' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X12 _diffrn_source.pdbx_wavelength 1.459 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2Y3Y _reflns.observed_criterion_sigma_I 3.5 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.94 _reflns.d_resolution_high 2.39 _reflns.number_obs 24202 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.80 _reflns.B_iso_Wilson_estimate 52.396 _reflns.pdbx_redundancy 14.0 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.39 _reflns_shell.d_res_low 2.52 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.64 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.50 _reflns_shell.pdbx_redundancy 8.2 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2Y3Y _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 21766 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 72.98 _refine.ls_d_res_high 2.39 _refine.ls_percent_reflns_obs 94.78 _refine.ls_R_factor_obs 0.23170 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22917 _refine.ls_R_factor_R_free 0.27892 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1177 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.921 _refine.correlation_coeff_Fo_to_Fc_free 0.885 _refine.B_iso_mean 43.377 _refine.aniso_B[1][1] -0.26 _refine.aniso_B[2][2] -0.26 _refine.aniso_B[3][3] 0.51 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY. UNEXPECTED ELECTRON DENSITY WAS MODELED AS ALPHA-CHAIN (Q) ; _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.294 _refine.pdbx_overall_ESU_R_Free 0.248 _refine.overall_SU_ML 0.170 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.966 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2686 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 55 _refine_hist.number_atoms_solvent 66 _refine_hist.number_atoms_total 2807 _refine_hist.d_res_high 2.39 _refine_hist.d_res_low 72.98 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.026 0.021 ? 2773 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.216 1.945 ? 3720 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.667 5.000 ? 336 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 40.883 24.706 ? 136 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 19.572 15.000 ? 516 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.779 15.000 ? 16 'X-RAY DIFFRACTION' ? r_chiral_restr 0.163 0.200 ? 429 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 2000 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.496 1.500 ? 1673 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.803 2.000 ? 2696 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.966 3.000 ? 1100 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 6.428 4.500 ? 1024 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.390 _refine_ls_shell.d_res_low 2.452 _refine_ls_shell.number_reflns_R_work 1485 _refine_ls_shell.R_factor_R_work 0.250 _refine_ls_shell.percent_reflns_obs 87.56 _refine_ls_shell.R_factor_R_free 0.307 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 78 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2Y3Y _struct.title 'Holo-Ni(II) HpNikR is a symmetric tetramer containing four canonic square-planar Ni(II) ions at physiological pH' _struct.pdbx_descriptor 'PUTATIVE NICKEL-RESPONSIVE REGULATOR, UNDECAPEPTIDE-GSSSGSASGAG' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Y3Y _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'TRANSCRIPTION, METAL BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 3 ? J N N 4 ? K N N 5 ? L N N 5 ? M N N 5 ? N N N 3 ? O N N 6 ? P N N 6 ? Q N N 6 ? R N N 6 ? S N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 21 ? SER A 33 ? GLU A 78 SER A 90 1 ? 13 HELX_P HELX_P2 2 SER A 60 ? LEU A 73 ? SER A 117 LEU A 130 1 ? 14 HELX_P HELX_P3 3 GLU B 21 ? SER B 33 ? GLU B 78 SER B 90 1 ? 13 HELX_P HELX_P4 4 ASN B 59 ? GLY B 72 ? ASN B 116 GLY B 129 1 ? 14 HELX_P HELX_P5 5 GLU C 21 ? SER C 33 ? GLU C 78 SER C 90 1 ? 13 HELX_P HELX_P6 6 ASN C 59 ? GLY C 72 ? ASN C 116 GLY C 129 1 ? 14 HELX_P HELX_P7 7 GLU D 21 ? SER D 33 ? GLU D 78 SER D 90 1 ? 13 HELX_P HELX_P8 8 ASN D 59 ? GLY D 72 ? ASN D 116 GLY D 129 1 ? 14 HELX_P HELX_P9 9 SER E 2 ? ALA E 10 ? SER Q 2 ALA Q 10 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? F NI . NI ? ? ? 1_555 A HIS 44 ND1 ? ? A NI 1143 A HIS 101 1_555 ? ? ? ? ? ? ? 1.975 ? metalc2 metalc ? ? F NI . NI ? ? ? 1_555 A HIS 42 NE2 ? ? A NI 1143 A HIS 99 1_555 ? ? ? ? ? ? ? 2.088 ? metalc3 metalc ? ? F NI . NI ? ? ? 1_555 A CYS 50 SG ? ? A NI 1143 A CYS 107 1_555 ? ? ? ? ? ? ? 2.184 ? metalc4 metalc ? ? F NI . NI ? ? ? 1_555 B HIS 31 NE2 ? ? A NI 1143 B HIS 88 1_555 ? ? ? ? ? ? ? 1.981 ? metalc5 metalc ? ? G NI . NI ? ? ? 1_555 A HIS 31 NE2 ? ? B NI 1143 A HIS 88 1_555 ? ? ? ? ? ? ? 1.937 ? metalc6 metalc ? ? G NI . NI ? ? ? 1_555 B HIS 42 NE2 ? ? B NI 1143 B HIS 99 1_555 ? ? ? ? ? ? ? 1.986 ? metalc7 metalc ? ? G NI . NI ? ? ? 1_555 B HIS 44 ND1 ? ? B NI 1143 B HIS 101 1_555 ? ? ? ? ? ? ? 2.018 ? metalc8 metalc ? ? G NI . NI ? ? ? 1_555 B CYS 50 SG ? ? B NI 1143 B CYS 107 1_555 ? ? ? ? ? ? ? 2.197 ? metalc9 metalc ? ? I NI . NI ? ? ? 1_555 C HIS 44 ND1 ? ? C NI 1142 C HIS 101 1_555 ? ? ? ? ? ? ? 1.898 ? metalc10 metalc ? ? I NI . NI ? ? ? 1_555 C CYS 50 SG ? ? C NI 1142 C CYS 107 1_555 ? ? ? ? ? ? ? 2.139 ? metalc11 metalc ? ? I NI . NI ? ? ? 1_555 C HIS 42 NE2 ? ? C NI 1142 C HIS 99 1_555 ? ? ? ? ? ? ? 2.070 ? metalc12 metalc ? ? I NI . NI ? ? ? 1_555 D HIS 31 NE2 ? ? C NI 1142 D HIS 88 1_555 ? ? ? ? ? ? ? 2.046 ? metalc13 metalc ? ? N NI . NI ? ? ? 1_555 D CYS 50 SG ? ? D NI 1143 D CYS 107 1_555 ? ? ? ? ? ? ? 2.217 ? metalc14 metalc ? ? N NI . NI ? ? ? 1_555 D HIS 42 NE2 ? ? D NI 1143 D HIS 99 1_555 ? ? ? ? ? ? ? 1.935 ? metalc15 metalc ? ? N NI . NI ? ? ? 1_555 D HIS 44 ND1 ? ? D NI 1143 D HIS 101 1_555 ? ? ? ? ? ? ? 2.043 ? metalc16 metalc ? ? N NI . NI ? ? ? 1_555 C HIS 31 NE2 ? ? D NI 1143 C HIS 88 1_555 ? ? ? ? ? ? ? 1.900 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 8 ? CA ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AA 6 7 ? anti-parallel AA 7 8 ? anti-parallel CA 1 2 ? anti-parallel CA 2 3 ? anti-parallel CA 3 4 ? anti-parallel CA 4 5 ? anti-parallel CA 5 6 ? anti-parallel CA 6 7 ? anti-parallel CA 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 76 ? LYS A 83 ? VAL A 133 LYS A 140 AA 2 SER A 6 ? TYR A 15 ? SER A 63 TYR A 72 AA 3 ASN A 49 ? ASN A 59 ? ASN A 106 ASN A 116 AA 4 VAL A 37 ? ASP A 46 ? VAL A 94 ASP A 103 AA 5 HIS B 36 ? ASP B 46 ? HIS B 93 ASP B 103 AA 6 ASN B 49 ? GLY B 58 ? ASN B 106 GLY B 115 AA 7 LYS B 7 ? TYR B 15 ? LYS B 64 TYR B 72 AA 8 VAL B 76 ? LYS B 83 ? VAL B 133 LYS B 140 CA 1 VAL C 76 ? ALA C 84 ? VAL C 133 ALA C 141 CA 2 LYS C 7 ? TYR C 15 ? LYS C 64 TYR C 72 CA 3 ASN C 49 ? GLY C 58 ? ASN C 106 GLY C 115 CA 4 VAL C 37 ? ASP C 46 ? VAL C 94 ASP C 103 CA 5 HIS D 36 ? ASP D 46 ? HIS D 93 ASP D 103 CA 6 ASN D 49 ? GLY D 58 ? ASN D 106 GLY D 115 CA 7 LYS D 7 ? TYR D 15 ? LYS D 64 TYR D 72 CA 8 VAL D 76 ? LYS D 83 ? VAL D 133 LYS D 140 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N THR A 82 ? N THR A 139 O VAL A 10 ? O VAL A 67 AA 2 3 N TYR A 15 ? N TYR A 72 O CYS A 50 ? O CYS A 107 AA 3 4 O ILE A 55 ? O ILE A 112 N LEU A 38 ? N LEU A 95 AA 4 5 N HIS A 42 ? N HIS A 99 O THR B 40 ? O THR B 97 AA 5 6 N MET B 45 ? N MET B 102 O ASN B 49 ? O ASN B 106 AA 6 7 N GLY B 58 ? N GLY B 115 O LYS B 7 ? O LYS B 64 AA 7 8 O ILE B 14 ? O ILE B 71 N LYS B 77 ? N LYS B 134 CA 1 2 N ALA C 84 ? N ALA C 141 O ILE C 8 ? O ILE C 65 CA 2 3 N TYR C 15 ? N TYR C 72 O CYS C 50 ? O CYS C 107 CA 3 4 O ILE C 55 ? O ILE C 112 N LEU C 38 ? N LEU C 95 CA 4 5 N HIS C 42 ? N HIS C 99 O THR D 40 ? O THR D 97 CA 5 6 N ASP D 46 ? N ASP D 103 O ASN D 49 ? O ASN D 106 CA 6 7 N GLY D 58 ? N GLY D 115 O LYS D 7 ? O LYS D 64 CA 7 8 O ILE D 14 ? O ILE D 71 N LYS D 77 ? N LYS D 134 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE NI A 1143' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE NI B 1143' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NI C 1142' AC4 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE PEG C 1144' AC5 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE PEG C 1145' AC6 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE PEG C 1146' AC7 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE NI D 1143' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 42 ? HIS A 99 . ? 1_555 ? 2 AC1 4 HIS A 44 ? HIS A 101 . ? 1_555 ? 3 AC1 4 CYS A 50 ? CYS A 107 . ? 1_555 ? 4 AC1 4 HIS B 31 ? HIS B 88 . ? 1_555 ? 5 AC2 4 HIS A 31 ? HIS A 88 . ? 1_555 ? 6 AC2 4 HIS B 42 ? HIS B 99 . ? 1_555 ? 7 AC2 4 HIS B 44 ? HIS B 101 . ? 1_555 ? 8 AC2 4 CYS B 50 ? CYS B 107 . ? 1_555 ? 9 AC3 5 HIS C 42 ? HIS C 99 . ? 1_555 ? 10 AC3 5 HIS C 44 ? HIS C 101 . ? 1_555 ? 11 AC3 5 CYS C 50 ? CYS C 107 . ? 1_555 ? 12 AC3 5 ILE D 27 ? ILE D 84 . ? 1_555 ? 13 AC3 5 HIS D 31 ? HIS D 88 . ? 1_555 ? 14 AC4 1 PEG L . ? PEG C 1145 . ? 1_555 ? 15 AC5 2 PEG K . ? PEG C 1144 . ? 1_555 ? 16 AC5 2 PEG M . ? PEG C 1146 . ? 1_555 ? 17 AC6 1 PEG L . ? PEG C 1145 . ? 1_555 ? 18 AC7 4 HIS C 31 ? HIS C 88 . ? 1_555 ? 19 AC7 4 HIS D 42 ? HIS D 99 . ? 1_555 ? 20 AC7 4 HIS D 44 ? HIS D 101 . ? 1_555 ? 21 AC7 4 CYS D 50 ? CYS D 107 . ? 1_555 ? # _database_PDB_matrix.entry_id 2Y3Y _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2Y3Y _atom_sites.fract_transf_matrix[1][1] 0.013704 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013704 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008567 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NI O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 58 ? ? ? A . n A 1 2 PRO 2 59 ? ? ? A . n A 1 3 ASN 3 60 60 ASN ASN A . n A 1 4 ASP 4 61 61 ASP ASP A . n A 1 5 GLU 5 62 62 GLU GLU A . n A 1 6 SER 6 63 63 SER SER A . n A 1 7 LYS 7 64 64 LYS LYS A . n A 1 8 ILE 8 65 65 ILE ILE A . n A 1 9 ALA 9 66 66 ALA ALA A . n A 1 10 VAL 10 67 67 VAL VAL A . n A 1 11 LEU 11 68 68 LEU LEU A . n A 1 12 VAL 12 69 69 VAL VAL A . n A 1 13 VAL 13 70 70 VAL VAL A . n A 1 14 ILE 14 71 71 ILE ILE A . n A 1 15 TYR 15 72 72 TYR TYR A . n A 1 16 ASP 16 73 73 ASP ASP A . n A 1 17 HIS 17 74 74 HIS HIS A . n A 1 18 HIS 18 75 75 HIS HIS A . n A 1 19 GLN 19 76 76 GLN GLN A . n A 1 20 ARG 20 77 77 ARG ARG A . n A 1 21 GLU 21 78 78 GLU GLU A . n A 1 22 LEU 22 79 79 LEU LEU A . n A 1 23 ASN 23 80 80 ASN ASN A . n A 1 24 GLN 24 81 81 GLN GLN A . n A 1 25 ARG 25 82 82 ARG ARG A . n A 1 26 MET 26 83 83 MET MET A . n A 1 27 ILE 27 84 84 ILE ILE A . n A 1 28 ASP 28 85 85 ASP ASP A . n A 1 29 ILE 29 86 86 ILE ILE A . n A 1 30 GLN 30 87 87 GLN GLN A . n A 1 31 HIS 31 88 88 HIS HIS A . n A 1 32 ALA 32 89 89 ALA ALA A . n A 1 33 SER 33 90 90 SER SER A . n A 1 34 GLY 34 91 91 GLY GLY A . n A 1 35 THR 35 92 92 THR THR A . n A 1 36 HIS 36 93 93 HIS HIS A . n A 1 37 VAL 37 94 94 VAL VAL A . n A 1 38 LEU 38 95 95 LEU LEU A . n A 1 39 CYS 39 96 96 CYS CYS A . n A 1 40 THR 40 97 97 THR THR A . n A 1 41 THR 41 98 98 THR THR A . n A 1 42 HIS 42 99 99 HIS HIS A . n A 1 43 ILE 43 100 100 ILE ILE A . n A 1 44 HIS 44 101 101 HIS HIS A . n A 1 45 MET 45 102 102 MET MET A . n A 1 46 ASP 46 103 103 ASP ASP A . n A 1 47 GLU 47 104 104 GLU GLU A . n A 1 48 HIS 48 105 105 HIS HIS A . n A 1 49 ASN 49 106 106 ASN ASN A . n A 1 50 CYS 50 107 107 CYS CYS A . n A 1 51 LEU 51 108 108 LEU LEU A . n A 1 52 GLU 52 109 109 GLU GLU A . n A 1 53 THR 53 110 110 THR THR A . n A 1 54 ILE 54 111 111 ILE ILE A . n A 1 55 ILE 55 112 112 ILE ILE A . n A 1 56 LEU 56 113 113 LEU LEU A . n A 1 57 GLN 57 114 114 GLN GLN A . n A 1 58 GLY 58 115 115 GLY GLY A . n A 1 59 ASN 59 116 116 ASN ASN A . n A 1 60 SER 60 117 117 SER SER A . n A 1 61 PHE 61 118 118 PHE PHE A . n A 1 62 GLU 62 119 119 GLU GLU A . n A 1 63 ILE 63 120 120 ILE ILE A . n A 1 64 GLN 64 121 121 GLN GLN A . n A 1 65 ARG 65 122 122 ARG ARG A . n A 1 66 LEU 66 123 123 LEU LEU A . n A 1 67 GLN 67 124 124 GLN GLN A . n A 1 68 LEU 68 125 125 LEU LEU A . n A 1 69 GLU 69 126 126 GLU GLU A . n A 1 70 ILE 70 127 127 ILE ILE A . n A 1 71 GLY 71 128 128 GLY GLY A . n A 1 72 GLY 72 129 129 GLY GLY A . n A 1 73 LEU 73 130 130 LEU LEU A . n A 1 74 ARG 74 131 131 ARG ARG A . n A 1 75 GLY 75 132 132 GLY GLY A . n A 1 76 VAL 76 133 133 VAL VAL A . n A 1 77 LYS 77 134 134 LYS LYS A . n A 1 78 PHE 78 135 135 PHE PHE A . n A 1 79 ALA 79 136 136 ALA ALA A . n A 1 80 LYS 80 137 137 LYS LYS A . n A 1 81 LEU 81 138 138 LEU LEU A . n A 1 82 THR 82 139 139 THR THR A . n A 1 83 LYS 83 140 140 LYS LYS A . n A 1 84 ALA 84 141 141 ALA ALA A . n A 1 85 SER 85 142 142 SER SER A . n A 1 86 SER 86 143 ? ? ? A . n A 1 87 PHE 87 144 ? ? ? A . n A 1 88 GLU 88 145 ? ? ? A . n A 1 89 HIS 89 146 ? ? ? A . n A 1 90 ASN 90 147 ? ? ? A . n A 1 91 GLU 91 148 ? ? ? A . n B 1 1 ASN 1 58 ? ? ? B . n B 1 2 PRO 2 59 ? ? ? B . n B 1 3 ASN 3 60 60 ASN ASN B . n B 1 4 ASP 4 61 61 ASP ASP B . n B 1 5 GLU 5 62 62 GLU GLU B . n B 1 6 SER 6 63 63 SER SER B . n B 1 7 LYS 7 64 64 LYS LYS B . n B 1 8 ILE 8 65 65 ILE ILE B . n B 1 9 ALA 9 66 66 ALA ALA B . n B 1 10 VAL 10 67 67 VAL VAL B . n B 1 11 LEU 11 68 68 LEU LEU B . n B 1 12 VAL 12 69 69 VAL VAL B . n B 1 13 VAL 13 70 70 VAL VAL B . n B 1 14 ILE 14 71 71 ILE ILE B . n B 1 15 TYR 15 72 72 TYR TYR B . n B 1 16 ASP 16 73 73 ASP ASP B . n B 1 17 HIS 17 74 74 HIS HIS B . n B 1 18 HIS 18 75 75 HIS HIS B . n B 1 19 GLN 19 76 76 GLN GLN B . n B 1 20 ARG 20 77 77 ARG ARG B . n B 1 21 GLU 21 78 78 GLU GLU B . n B 1 22 LEU 22 79 79 LEU LEU B . n B 1 23 ASN 23 80 80 ASN ASN B . n B 1 24 GLN 24 81 81 GLN GLN B . n B 1 25 ARG 25 82 82 ARG ARG B . n B 1 26 MET 26 83 83 MET MET B . n B 1 27 ILE 27 84 84 ILE ILE B . n B 1 28 ASP 28 85 85 ASP ASP B . n B 1 29 ILE 29 86 86 ILE ILE B . n B 1 30 GLN 30 87 87 GLN GLN B . n B 1 31 HIS 31 88 88 HIS HIS B . n B 1 32 ALA 32 89 89 ALA ALA B . n B 1 33 SER 33 90 90 SER SER B . n B 1 34 GLY 34 91 91 GLY GLY B . n B 1 35 THR 35 92 92 THR THR B . n B 1 36 HIS 36 93 93 HIS HIS B . n B 1 37 VAL 37 94 94 VAL VAL B . n B 1 38 LEU 38 95 95 LEU LEU B . n B 1 39 CYS 39 96 96 CYS CYS B . n B 1 40 THR 40 97 97 THR THR B . n B 1 41 THR 41 98 98 THR THR B . n B 1 42 HIS 42 99 99 HIS HIS B . n B 1 43 ILE 43 100 100 ILE ILE B . n B 1 44 HIS 44 101 101 HIS HIS B . n B 1 45 MET 45 102 102 MET MET B . n B 1 46 ASP 46 103 103 ASP ASP B . n B 1 47 GLU 47 104 104 GLU GLU B . n B 1 48 HIS 48 105 105 HIS HIS B . n B 1 49 ASN 49 106 106 ASN ASN B . n B 1 50 CYS 50 107 107 CYS CYS B . n B 1 51 LEU 51 108 108 LEU LEU B . n B 1 52 GLU 52 109 109 GLU GLU B . n B 1 53 THR 53 110 110 THR THR B . n B 1 54 ILE 54 111 111 ILE ILE B . n B 1 55 ILE 55 112 112 ILE ILE B . n B 1 56 LEU 56 113 113 LEU LEU B . n B 1 57 GLN 57 114 114 GLN GLN B . n B 1 58 GLY 58 115 115 GLY GLY B . n B 1 59 ASN 59 116 116 ASN ASN B . n B 1 60 SER 60 117 117 SER SER B . n B 1 61 PHE 61 118 118 PHE PHE B . n B 1 62 GLU 62 119 119 GLU GLU B . n B 1 63 ILE 63 120 120 ILE ILE B . n B 1 64 GLN 64 121 121 GLN GLN B . n B 1 65 ARG 65 122 122 ARG ARG B . n B 1 66 LEU 66 123 123 LEU LEU B . n B 1 67 GLN 67 124 124 GLN GLN B . n B 1 68 LEU 68 125 125 LEU LEU B . n B 1 69 GLU 69 126 126 GLU GLU B . n B 1 70 ILE 70 127 127 ILE ILE B . n B 1 71 GLY 71 128 128 GLY GLY B . n B 1 72 GLY 72 129 129 GLY GLY B . n B 1 73 LEU 73 130 130 LEU LEU B . n B 1 74 ARG 74 131 131 ARG ARG B . n B 1 75 GLY 75 132 132 GLY GLY B . n B 1 76 VAL 76 133 133 VAL VAL B . n B 1 77 LYS 77 134 134 LYS LYS B . n B 1 78 PHE 78 135 135 PHE PHE B . n B 1 79 ALA 79 136 136 ALA ALA B . n B 1 80 LYS 80 137 137 LYS LYS B . n B 1 81 LEU 81 138 138 LEU LEU B . n B 1 82 THR 82 139 139 THR THR B . n B 1 83 LYS 83 140 140 LYS LYS B . n B 1 84 ALA 84 141 141 ALA ALA B . n B 1 85 SER 85 142 142 SER SER B . n B 1 86 SER 86 143 ? ? ? B . n B 1 87 PHE 87 144 ? ? ? B . n B 1 88 GLU 88 145 ? ? ? B . n B 1 89 HIS 89 146 ? ? ? B . n B 1 90 ASN 90 147 ? ? ? B . n B 1 91 GLU 91 148 ? ? ? B . n C 1 1 ASN 1 58 ? ? ? C . n C 1 2 PRO 2 59 ? ? ? C . n C 1 3 ASN 3 60 ? ? ? C . n C 1 4 ASP 4 61 61 ASP ASP C . n C 1 5 GLU 5 62 62 GLU GLU C . n C 1 6 SER 6 63 63 SER SER C . n C 1 7 LYS 7 64 64 LYS LYS C . n C 1 8 ILE 8 65 65 ILE ILE C . n C 1 9 ALA 9 66 66 ALA ALA C . n C 1 10 VAL 10 67 67 VAL VAL C . n C 1 11 LEU 11 68 68 LEU LEU C . n C 1 12 VAL 12 69 69 VAL VAL C . n C 1 13 VAL 13 70 70 VAL VAL C . n C 1 14 ILE 14 71 71 ILE ILE C . n C 1 15 TYR 15 72 72 TYR TYR C . n C 1 16 ASP 16 73 73 ASP ASP C . n C 1 17 HIS 17 74 74 HIS HIS C . n C 1 18 HIS 18 75 75 HIS HIS C . n C 1 19 GLN 19 76 76 GLN GLN C . n C 1 20 ARG 20 77 77 ARG ARG C . n C 1 21 GLU 21 78 78 GLU GLU C . n C 1 22 LEU 22 79 79 LEU LEU C . n C 1 23 ASN 23 80 80 ASN ASN C . n C 1 24 GLN 24 81 81 GLN GLN C . n C 1 25 ARG 25 82 82 ARG ARG C . n C 1 26 MET 26 83 83 MET MET C . n C 1 27 ILE 27 84 84 ILE ILE C . n C 1 28 ASP 28 85 85 ASP ASP C . n C 1 29 ILE 29 86 86 ILE ILE C . n C 1 30 GLN 30 87 87 GLN GLN C . n C 1 31 HIS 31 88 88 HIS HIS C . n C 1 32 ALA 32 89 89 ALA ALA C . n C 1 33 SER 33 90 90 SER SER C . n C 1 34 GLY 34 91 91 GLY GLY C . n C 1 35 THR 35 92 92 THR THR C . n C 1 36 HIS 36 93 93 HIS HIS C . n C 1 37 VAL 37 94 94 VAL VAL C . n C 1 38 LEU 38 95 95 LEU LEU C . n C 1 39 CYS 39 96 96 CYS CYS C . n C 1 40 THR 40 97 97 THR THR C . n C 1 41 THR 41 98 98 THR THR C . n C 1 42 HIS 42 99 99 HIS HIS C . n C 1 43 ILE 43 100 100 ILE ILE C . n C 1 44 HIS 44 101 101 HIS HIS C . n C 1 45 MET 45 102 102 MET MET C . n C 1 46 ASP 46 103 103 ASP ASP C . n C 1 47 GLU 47 104 104 GLU GLU C . n C 1 48 HIS 48 105 105 HIS HIS C . n C 1 49 ASN 49 106 106 ASN ASN C . n C 1 50 CYS 50 107 107 CYS CYS C . n C 1 51 LEU 51 108 108 LEU LEU C . n C 1 52 GLU 52 109 109 GLU GLU C . n C 1 53 THR 53 110 110 THR THR C . n C 1 54 ILE 54 111 111 ILE ILE C . n C 1 55 ILE 55 112 112 ILE ILE C . n C 1 56 LEU 56 113 113 LEU LEU C . n C 1 57 GLN 57 114 114 GLN GLN C . n C 1 58 GLY 58 115 115 GLY GLY C . n C 1 59 ASN 59 116 116 ASN ASN C . n C 1 60 SER 60 117 117 SER SER C . n C 1 61 PHE 61 118 118 PHE PHE C . n C 1 62 GLU 62 119 119 GLU GLU C . n C 1 63 ILE 63 120 120 ILE ILE C . n C 1 64 GLN 64 121 121 GLN GLN C . n C 1 65 ARG 65 122 122 ARG ARG C . n C 1 66 LEU 66 123 123 LEU LEU C . n C 1 67 GLN 67 124 124 GLN GLN C . n C 1 68 LEU 68 125 125 LEU LEU C . n C 1 69 GLU 69 126 126 GLU GLU C . n C 1 70 ILE 70 127 127 ILE ILE C . n C 1 71 GLY 71 128 128 GLY GLY C . n C 1 72 GLY 72 129 129 GLY GLY C . n C 1 73 LEU 73 130 130 LEU LEU C . n C 1 74 ARG 74 131 131 ARG ARG C . n C 1 75 GLY 75 132 132 GLY GLY C . n C 1 76 VAL 76 133 133 VAL VAL C . n C 1 77 LYS 77 134 134 LYS LYS C . n C 1 78 PHE 78 135 135 PHE PHE C . n C 1 79 ALA 79 136 136 ALA ALA C . n C 1 80 LYS 80 137 137 LYS LYS C . n C 1 81 LEU 81 138 138 LEU LEU C . n C 1 82 THR 82 139 139 THR THR C . n C 1 83 LYS 83 140 140 LYS LYS C . n C 1 84 ALA 84 141 141 ALA ALA C . n C 1 85 SER 85 142 ? ? ? C . n C 1 86 SER 86 143 ? ? ? C . n C 1 87 PHE 87 144 ? ? ? C . n C 1 88 GLU 88 145 ? ? ? C . n C 1 89 HIS 89 146 ? ? ? C . n C 1 90 ASN 90 147 ? ? ? C . n C 1 91 GLU 91 148 ? ? ? C . n D 1 1 ASN 1 58 ? ? ? D . n D 1 2 PRO 2 59 ? ? ? D . n D 1 3 ASN 3 60 60 ASN ASN D . n D 1 4 ASP 4 61 61 ASP ASP D . n D 1 5 GLU 5 62 62 GLU GLU D . n D 1 6 SER 6 63 63 SER SER D . n D 1 7 LYS 7 64 64 LYS LYS D . n D 1 8 ILE 8 65 65 ILE ILE D . n D 1 9 ALA 9 66 66 ALA ALA D . n D 1 10 VAL 10 67 67 VAL VAL D . n D 1 11 LEU 11 68 68 LEU LEU D . n D 1 12 VAL 12 69 69 VAL VAL D . n D 1 13 VAL 13 70 70 VAL VAL D . n D 1 14 ILE 14 71 71 ILE ILE D . n D 1 15 TYR 15 72 72 TYR TYR D . n D 1 16 ASP 16 73 73 ASP ASP D . n D 1 17 HIS 17 74 74 HIS HIS D . n D 1 18 HIS 18 75 75 HIS HIS D . n D 1 19 GLN 19 76 76 GLN GLN D . n D 1 20 ARG 20 77 77 ARG ARG D . n D 1 21 GLU 21 78 78 GLU GLU D . n D 1 22 LEU 22 79 79 LEU LEU D . n D 1 23 ASN 23 80 80 ASN ASN D . n D 1 24 GLN 24 81 81 GLN GLN D . n D 1 25 ARG 25 82 82 ARG ARG D . n D 1 26 MET 26 83 83 MET MET D . n D 1 27 ILE 27 84 84 ILE ILE D . n D 1 28 ASP 28 85 85 ASP ASP D . n D 1 29 ILE 29 86 86 ILE ILE D . n D 1 30 GLN 30 87 87 GLN GLN D . n D 1 31 HIS 31 88 88 HIS HIS D . n D 1 32 ALA 32 89 89 ALA ALA D . n D 1 33 SER 33 90 90 SER SER D . n D 1 34 GLY 34 91 91 GLY GLY D . n D 1 35 THR 35 92 92 THR THR D . n D 1 36 HIS 36 93 93 HIS HIS D . n D 1 37 VAL 37 94 94 VAL VAL D . n D 1 38 LEU 38 95 95 LEU LEU D . n D 1 39 CYS 39 96 96 CYS CYS D . n D 1 40 THR 40 97 97 THR THR D . n D 1 41 THR 41 98 98 THR THR D . n D 1 42 HIS 42 99 99 HIS HIS D . n D 1 43 ILE 43 100 100 ILE ILE D . n D 1 44 HIS 44 101 101 HIS HIS D . n D 1 45 MET 45 102 102 MET MET D . n D 1 46 ASP 46 103 103 ASP ASP D . n D 1 47 GLU 47 104 104 GLU GLU D . n D 1 48 HIS 48 105 105 HIS HIS D . n D 1 49 ASN 49 106 106 ASN ASN D . n D 1 50 CYS 50 107 107 CYS CYS D . n D 1 51 LEU 51 108 108 LEU LEU D . n D 1 52 GLU 52 109 109 GLU GLU D . n D 1 53 THR 53 110 110 THR THR D . n D 1 54 ILE 54 111 111 ILE ILE D . n D 1 55 ILE 55 112 112 ILE ILE D . n D 1 56 LEU 56 113 113 LEU LEU D . n D 1 57 GLN 57 114 114 GLN GLN D . n D 1 58 GLY 58 115 115 GLY GLY D . n D 1 59 ASN 59 116 116 ASN ASN D . n D 1 60 SER 60 117 117 SER SER D . n D 1 61 PHE 61 118 118 PHE PHE D . n D 1 62 GLU 62 119 119 GLU GLU D . n D 1 63 ILE 63 120 120 ILE ILE D . n D 1 64 GLN 64 121 121 GLN GLN D . n D 1 65 ARG 65 122 122 ARG ARG D . n D 1 66 LEU 66 123 123 LEU LEU D . n D 1 67 GLN 67 124 124 GLN GLN D . n D 1 68 LEU 68 125 125 LEU LEU D . n D 1 69 GLU 69 126 126 GLU GLU D . n D 1 70 ILE 70 127 127 ILE ILE D . n D 1 71 GLY 71 128 128 GLY GLY D . n D 1 72 GLY 72 129 129 GLY GLY D . n D 1 73 LEU 73 130 130 LEU LEU D . n D 1 74 ARG 74 131 131 ARG ARG D . n D 1 75 GLY 75 132 132 GLY GLY D . n D 1 76 VAL 76 133 133 VAL VAL D . n D 1 77 LYS 77 134 134 LYS LYS D . n D 1 78 PHE 78 135 135 PHE PHE D . n D 1 79 ALA 79 136 136 ALA ALA D . n D 1 80 LYS 80 137 137 LYS LYS D . n D 1 81 LEU 81 138 138 LEU LEU D . n D 1 82 THR 82 139 139 THR THR D . n D 1 83 LYS 83 140 140 LYS LYS D . n D 1 84 ALA 84 141 141 ALA ALA D . n D 1 85 SER 85 142 142 SER SER D . n D 1 86 SER 86 143 ? ? ? D . n D 1 87 PHE 87 144 ? ? ? D . n D 1 88 GLU 88 145 ? ? ? D . n D 1 89 HIS 89 146 ? ? ? D . n D 1 90 ASN 90 147 ? ? ? D . n D 1 91 GLU 91 148 ? ? ? D . n E 2 1 GLY 1 1 1 GLY GLY Q . n E 2 2 SER 2 2 2 SER SER Q . n E 2 3 SER 3 3 3 SER SER Q . n E 2 4 SER 4 4 4 SER SER Q . n E 2 5 GLY 5 5 5 GLY GLY Q . n E 2 6 SER 6 6 6 SER SER Q . n E 2 7 ALA 7 7 7 ALA ALA Q . n E 2 8 SER 8 8 8 SER SER Q . n E 2 9 GLY 9 9 9 GLY GLY Q . n E 2 10 ALA 10 10 10 ALA ALA Q . n E 2 11 GLY 11 11 11 GLY GLY Q . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 NI 1 1143 1143 NI NI A . G 3 NI 1 1143 1143 NI NI B . H 4 EPE 1 1144 1144 EPE EPE B . I 3 NI 1 1142 1142 NI NI C . J 4 EPE 1 1143 1143 EPE EPE C . K 5 PEG 1 1144 1144 PEG PEG C . L 5 PEG 1 1145 1145 PEG PEG C . M 5 PEG 1 1146 1146 PEG PEG C . N 3 NI 1 1143 1143 NI NI D . O 6 HOH 1 2001 2001 HOH HOH A . O 6 HOH 2 2002 2002 HOH HOH A . O 6 HOH 3 2003 2003 HOH HOH A . O 6 HOH 4 2004 2004 HOH HOH A . O 6 HOH 5 2005 2005 HOH HOH A . O 6 HOH 6 2006 2006 HOH HOH A . O 6 HOH 7 2007 2007 HOH HOH A . O 6 HOH 8 2008 2008 HOH HOH A . O 6 HOH 9 2009 2009 HOH HOH A . O 6 HOH 10 2010 2010 HOH HOH A . O 6 HOH 11 2011 2011 HOH HOH A . O 6 HOH 12 2012 2012 HOH HOH A . O 6 HOH 13 2013 2013 HOH HOH A . O 6 HOH 14 2014 2014 HOH HOH A . O 6 HOH 15 2015 2015 HOH HOH A . O 6 HOH 16 2016 2016 HOH HOH A . O 6 HOH 17 2017 2017 HOH HOH A . O 6 HOH 18 2018 2018 HOH HOH A . P 6 HOH 1 2001 2001 HOH HOH B . P 6 HOH 2 2002 2002 HOH HOH B . P 6 HOH 3 2003 2003 HOH HOH B . P 6 HOH 4 2004 2004 HOH HOH B . P 6 HOH 5 2005 2005 HOH HOH B . P 6 HOH 6 2006 2006 HOH HOH B . P 6 HOH 7 2007 2007 HOH HOH B . P 6 HOH 8 2008 2008 HOH HOH B . P 6 HOH 9 2009 2009 HOH HOH B . P 6 HOH 10 2010 2010 HOH HOH B . P 6 HOH 11 2011 2011 HOH HOH B . P 6 HOH 12 2012 2012 HOH HOH B . P 6 HOH 13 2013 2013 HOH HOH B . P 6 HOH 14 2014 2014 HOH HOH B . P 6 HOH 15 2015 2015 HOH HOH B . P 6 HOH 16 2016 2016 HOH HOH B . P 6 HOH 17 2017 2017 HOH HOH B . Q 6 HOH 1 2001 2001 HOH HOH C . Q 6 HOH 2 2002 2002 HOH HOH C . Q 6 HOH 3 2003 2003 HOH HOH C . Q 6 HOH 4 2004 2004 HOH HOH C . Q 6 HOH 5 2005 2005 HOH HOH C . Q 6 HOH 6 2006 2006 HOH HOH C . Q 6 HOH 7 2007 2007 HOH HOH C . Q 6 HOH 8 2008 2008 HOH HOH C . Q 6 HOH 9 2009 2009 HOH HOH C . Q 6 HOH 10 2010 2010 HOH HOH C . Q 6 HOH 11 2011 2011 HOH HOH C . Q 6 HOH 12 2012 2012 HOH HOH C . Q 6 HOH 13 2013 2013 HOH HOH C . Q 6 HOH 14 2014 2014 HOH HOH C . Q 6 HOH 15 2015 2015 HOH HOH C . Q 6 HOH 16 2016 2016 HOH HOH C . Q 6 HOH 17 2017 2017 HOH HOH C . R 6 HOH 1 2001 2001 HOH HOH D . R 6 HOH 2 2002 2002 HOH HOH D . R 6 HOH 3 2003 2003 HOH HOH D . R 6 HOH 4 2004 2004 HOH HOH D . R 6 HOH 5 2005 2005 HOH HOH D . R 6 HOH 6 2006 2006 HOH HOH D . R 6 HOH 7 2007 2007 HOH HOH D . R 6 HOH 8 2008 2008 HOH HOH D . R 6 HOH 9 2009 2009 HOH HOH D . R 6 HOH 10 2010 2010 HOH HOH D . R 6 HOH 11 2011 2011 HOH HOH D . R 6 HOH 12 2012 2012 HOH HOH D . R 6 HOH 13 2013 2013 HOH HOH D . S 6 HOH 1 2001 2001 HOH HOH Q . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA tetrameric 4 2 software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,F,G,H,I,J,K,L,M,N,O,P,Q,R 2 1 E,S # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7220 ? 1 MORE -95.5 ? 1 'SSA (A^2)' 15220 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 ND1 ? A HIS 44 ? A HIS 101 ? 1_555 NI ? F NI . ? A NI 1143 ? 1_555 NE2 ? A HIS 42 ? A HIS 99 ? 1_555 92.9 ? 2 ND1 ? A HIS 44 ? A HIS 101 ? 1_555 NI ? F NI . ? A NI 1143 ? 1_555 SG ? A CYS 50 ? A CYS 107 ? 1_555 176.7 ? 3 NE2 ? A HIS 42 ? A HIS 99 ? 1_555 NI ? F NI . ? A NI 1143 ? 1_555 SG ? A CYS 50 ? A CYS 107 ? 1_555 89.0 ? 4 ND1 ? A HIS 44 ? A HIS 101 ? 1_555 NI ? F NI . ? A NI 1143 ? 1_555 NE2 ? B HIS 31 ? B HIS 88 ? 1_555 92.8 ? 5 NE2 ? A HIS 42 ? A HIS 99 ? 1_555 NI ? F NI . ? A NI 1143 ? 1_555 NE2 ? B HIS 31 ? B HIS 88 ? 1_555 167.4 ? 6 SG ? A CYS 50 ? A CYS 107 ? 1_555 NI ? F NI . ? A NI 1143 ? 1_555 NE2 ? B HIS 31 ? B HIS 88 ? 1_555 84.8 ? 7 NE2 ? A HIS 31 ? A HIS 88 ? 1_555 NI ? G NI . ? B NI 1143 ? 1_555 NE2 ? B HIS 42 ? B HIS 99 ? 1_555 173.1 ? 8 NE2 ? A HIS 31 ? A HIS 88 ? 1_555 NI ? G NI . ? B NI 1143 ? 1_555 ND1 ? B HIS 44 ? B HIS 101 ? 1_555 89.7 ? 9 NE2 ? B HIS 42 ? B HIS 99 ? 1_555 NI ? G NI . ? B NI 1143 ? 1_555 ND1 ? B HIS 44 ? B HIS 101 ? 1_555 96.7 ? 10 NE2 ? A HIS 31 ? A HIS 88 ? 1_555 NI ? G NI . ? B NI 1143 ? 1_555 SG ? B CYS 50 ? B CYS 107 ? 1_555 80.9 ? 11 NE2 ? B HIS 42 ? B HIS 99 ? 1_555 NI ? G NI . ? B NI 1143 ? 1_555 SG ? B CYS 50 ? B CYS 107 ? 1_555 92.5 ? 12 ND1 ? B HIS 44 ? B HIS 101 ? 1_555 NI ? G NI . ? B NI 1143 ? 1_555 SG ? B CYS 50 ? B CYS 107 ? 1_555 169.3 ? 13 ND1 ? C HIS 44 ? C HIS 101 ? 1_555 NI ? I NI . ? C NI 1142 ? 1_555 SG ? C CYS 50 ? C CYS 107 ? 1_555 172.8 ? 14 ND1 ? C HIS 44 ? C HIS 101 ? 1_555 NI ? I NI . ? C NI 1142 ? 1_555 NE2 ? C HIS 42 ? C HIS 99 ? 1_555 86.1 ? 15 SG ? C CYS 50 ? C CYS 107 ? 1_555 NI ? I NI . ? C NI 1142 ? 1_555 NE2 ? C HIS 42 ? C HIS 99 ? 1_555 93.5 ? 16 ND1 ? C HIS 44 ? C HIS 101 ? 1_555 NI ? I NI . ? C NI 1142 ? 1_555 NE2 ? D HIS 31 ? D HIS 88 ? 1_555 90.1 ? 17 SG ? C CYS 50 ? C CYS 107 ? 1_555 NI ? I NI . ? C NI 1142 ? 1_555 NE2 ? D HIS 31 ? D HIS 88 ? 1_555 90.1 ? 18 NE2 ? C HIS 42 ? C HIS 99 ? 1_555 NI ? I NI . ? C NI 1142 ? 1_555 NE2 ? D HIS 31 ? D HIS 88 ? 1_555 175.7 ? 19 SG ? D CYS 50 ? D CYS 107 ? 1_555 NI ? N NI . ? D NI 1143 ? 1_555 NE2 ? D HIS 42 ? D HIS 99 ? 1_555 96.1 ? 20 SG ? D CYS 50 ? D CYS 107 ? 1_555 NI ? N NI . ? D NI 1143 ? 1_555 ND1 ? D HIS 44 ? D HIS 101 ? 1_555 168.4 ? 21 NE2 ? D HIS 42 ? D HIS 99 ? 1_555 NI ? N NI . ? D NI 1143 ? 1_555 ND1 ? D HIS 44 ? D HIS 101 ? 1_555 94.7 ? 22 SG ? D CYS 50 ? D CYS 107 ? 1_555 NI ? N NI . ? D NI 1143 ? 1_555 NE2 ? C HIS 31 ? C HIS 88 ? 1_555 84.0 ? 23 NE2 ? D HIS 42 ? D HIS 99 ? 1_555 NI ? N NI . ? D NI 1143 ? 1_555 NE2 ? C HIS 31 ? C HIS 88 ? 1_555 175.5 ? 24 ND1 ? D HIS 44 ? D HIS 101 ? 1_555 NI ? N NI . ? D NI 1143 ? 1_555 NE2 ? C HIS 31 ? C HIS 88 ? 1_555 84.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-08-17 2 'Structure model' 1 1 2019-07-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' diffrn_source 2 2 'Structure model' software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 2 'Structure model' '_software.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0109 ? 1 XDS 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 HKL2Map phasing . ? 4 # _pdbx_entry_details.entry_id 2Y3Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'ONLY C-TERMINAL METAL-BINDING DOMAIN PRESENT.' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB B ASP 103 ? ? CG B ASP 103 ? ? OD1 B ASP 103 ? ? 124.84 118.30 6.54 0.90 N 2 1 CA B LEU 108 ? ? CB B LEU 108 ? ? CG B LEU 108 ? ? 129.24 115.30 13.94 2.30 N 3 1 CA D LEU 108 ? ? CB D LEU 108 ? ? CG D LEU 108 ? ? 131.93 115.30 16.63 2.30 N 4 1 CB D LEU 125 ? ? CG D LEU 125 ? ? CD1 D LEU 125 ? ? 100.38 111.00 -10.62 1.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 141 ? ? -114.72 -79.12 2 1 ASP B 103 ? ? -172.66 -173.39 3 1 ALA B 136 ? ? -158.24 65.35 4 1 ASP D 61 ? ? 0.29 62.53 5 1 GLU D 62 ? ? -164.71 -158.65 6 1 GLU D 78 ? ? 84.23 -7.03 7 1 ASP D 103 ? ? -170.75 -173.30 8 1 PHE D 135 ? ? 177.89 125.73 9 1 ALA D 136 ? ? -157.10 70.65 10 1 ALA D 141 ? ? -115.83 -119.74 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ASN _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 60 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASP _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 61 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 148.92 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 142 ? OG ? A SER 85 OG 2 1 Y 1 Q GLY 1 ? N ? E GLY 1 N 3 1 Y 1 Q GLY 11 ? C ? E GLY 11 C 4 1 Y 1 Q GLY 11 ? O ? E GLY 11 O # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 58 ? A ASN 1 2 1 Y 1 A PRO 59 ? A PRO 2 3 1 Y 1 A SER 143 ? A SER 86 4 1 Y 1 A PHE 144 ? A PHE 87 5 1 Y 1 A GLU 145 ? A GLU 88 6 1 Y 1 A HIS 146 ? A HIS 89 7 1 Y 1 A ASN 147 ? A ASN 90 8 1 Y 1 A GLU 148 ? A GLU 91 9 1 Y 1 B ASN 58 ? B ASN 1 10 1 Y 1 B PRO 59 ? B PRO 2 11 1 Y 1 B SER 143 ? B SER 86 12 1 Y 1 B PHE 144 ? B PHE 87 13 1 Y 1 B GLU 145 ? B GLU 88 14 1 Y 1 B HIS 146 ? B HIS 89 15 1 Y 1 B ASN 147 ? B ASN 90 16 1 Y 1 B GLU 148 ? B GLU 91 17 1 Y 1 C ASN 58 ? C ASN 1 18 1 Y 1 C PRO 59 ? C PRO 2 19 1 Y 1 C ASN 60 ? C ASN 3 20 1 Y 1 C SER 142 ? C SER 85 21 1 Y 1 C SER 143 ? C SER 86 22 1 Y 1 C PHE 144 ? C PHE 87 23 1 Y 1 C GLU 145 ? C GLU 88 24 1 Y 1 C HIS 146 ? C HIS 89 25 1 Y 1 C ASN 147 ? C ASN 90 26 1 Y 1 C GLU 148 ? C GLU 91 27 1 Y 1 D ASN 58 ? D ASN 1 28 1 Y 1 D PRO 59 ? D PRO 2 29 1 Y 1 D SER 143 ? D SER 86 30 1 Y 1 D PHE 144 ? D PHE 87 31 1 Y 1 D GLU 145 ? D GLU 88 32 1 Y 1 D HIS 146 ? D HIS 89 33 1 Y 1 D ASN 147 ? D ASN 90 34 1 Y 1 D GLU 148 ? D GLU 91 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'NICKEL (II) ION' NI 4 '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' EPE 5 'DI(HYDROXYETHYL)ETHER' PEG 6 water HOH #