data_2Y44 # _entry.id 2Y44 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2Y44 PDBE EBI-46894 WWPDB D_1290046894 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Y44 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-01-04 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Loveless, B.C.' 1 'Mason, J.W.' 2 'Sakurai, T.' 3 'Inoue, N.' 4 'Razavi, M.' 5 'Pearson, T.W.' 6 'Boulanger, M.J.' 7 # _citation.id primary _citation.title ;Structural Characterization and Epitope Mapping of the Glutamic Acid/Alanine-Rich Protein from Trypanosoma Congolense: Defining Assembly on the Parasite Cell Surface. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 286 _citation.page_first 20658 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21471223 _citation.pdbx_database_id_DOI 10.1074/JBC.M111.218941 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Loveless, B.C.' 1 primary 'Mason, J.W.' 2 primary 'Sakurai, T.' 3 primary 'Inoue, N.' 4 primary 'Razavi, M.' 5 primary 'Pearson, T.W.' 6 primary 'Boulanger, M.J.' 7 # _cell.entry_id 2Y44 _cell.length_a 36.184 _cell.length_b 37.795 _cell.length_c 40.680 _cell.angle_alpha 106.17 _cell.angle_beta 111.75 _cell.angle_gamma 99.50 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y44 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GLUTAMIC ACID/ALANINE-RICH PROTEIN' 19395.477 1 ? ? 'ECTODOMAIN, RESIDUES 40-224' ? 2 non-polymer syn 'IODIDE ION' 126.904 4 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 255 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name GARP # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;KVEEVQTMCDVARQLRALETASQSAVAAVVSSAREASEAKERAEKAVERAKSKKRGVDTATEAAARAAAAAQRAETVVSD ARKHAADLTAASKDAIETTDESLRLLAT(OCS)EADEPIRTAAKKCTGAAAEVTSKSLESAFDALAELLPDGADDIREHG AVFVKGLKSLEDDVRTAGEAKYEAEKAE ; _entity_poly.pdbx_seq_one_letter_code_can ;KVEEVQTMCDVARQLRALETASQSAVAAVVSSAREASEAKERAEKAVERAKSKKRGVDTATEAAARAAAAAQRAETVVSD ARKHAADLTAASKDAIETTDESLRLLATCEADEPIRTAAKKCTGAAAEVTSKSLESAFDALAELLPDGADDIREHGAVFV KGLKSLEDDVRTAGEAKYEAEKAE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 VAL n 1 3 GLU n 1 4 GLU n 1 5 VAL n 1 6 GLN n 1 7 THR n 1 8 MET n 1 9 CYS n 1 10 ASP n 1 11 VAL n 1 12 ALA n 1 13 ARG n 1 14 GLN n 1 15 LEU n 1 16 ARG n 1 17 ALA n 1 18 LEU n 1 19 GLU n 1 20 THR n 1 21 ALA n 1 22 SER n 1 23 GLN n 1 24 SER n 1 25 ALA n 1 26 VAL n 1 27 ALA n 1 28 ALA n 1 29 VAL n 1 30 VAL n 1 31 SER n 1 32 SER n 1 33 ALA n 1 34 ARG n 1 35 GLU n 1 36 ALA n 1 37 SER n 1 38 GLU n 1 39 ALA n 1 40 LYS n 1 41 GLU n 1 42 ARG n 1 43 ALA n 1 44 GLU n 1 45 LYS n 1 46 ALA n 1 47 VAL n 1 48 GLU n 1 49 ARG n 1 50 ALA n 1 51 LYS n 1 52 SER n 1 53 LYS n 1 54 LYS n 1 55 ARG n 1 56 GLY n 1 57 VAL n 1 58 ASP n 1 59 THR n 1 60 ALA n 1 61 THR n 1 62 GLU n 1 63 ALA n 1 64 ALA n 1 65 ALA n 1 66 ARG n 1 67 ALA n 1 68 ALA n 1 69 ALA n 1 70 ALA n 1 71 ALA n 1 72 GLN n 1 73 ARG n 1 74 ALA n 1 75 GLU n 1 76 THR n 1 77 VAL n 1 78 VAL n 1 79 SER n 1 80 ASP n 1 81 ALA n 1 82 ARG n 1 83 LYS n 1 84 HIS n 1 85 ALA n 1 86 ALA n 1 87 ASP n 1 88 LEU n 1 89 THR n 1 90 ALA n 1 91 ALA n 1 92 SER n 1 93 LYS n 1 94 ASP n 1 95 ALA n 1 96 ILE n 1 97 GLU n 1 98 THR n 1 99 THR n 1 100 ASP n 1 101 GLU n 1 102 SER n 1 103 LEU n 1 104 ARG n 1 105 LEU n 1 106 LEU n 1 107 ALA n 1 108 THR n 1 109 OCS n 1 110 GLU n 1 111 ALA n 1 112 ASP n 1 113 GLU n 1 114 PRO n 1 115 ILE n 1 116 ARG n 1 117 THR n 1 118 ALA n 1 119 ALA n 1 120 LYS n 1 121 LYS n 1 122 CYS n 1 123 THR n 1 124 GLY n 1 125 ALA n 1 126 ALA n 1 127 ALA n 1 128 GLU n 1 129 VAL n 1 130 THR n 1 131 SER n 1 132 LYS n 1 133 SER n 1 134 LEU n 1 135 GLU n 1 136 SER n 1 137 ALA n 1 138 PHE n 1 139 ASP n 1 140 ALA n 1 141 LEU n 1 142 ALA n 1 143 GLU n 1 144 LEU n 1 145 LEU n 1 146 PRO n 1 147 ASP n 1 148 GLY n 1 149 ALA n 1 150 ASP n 1 151 ASP n 1 152 ILE n 1 153 ARG n 1 154 GLU n 1 155 HIS n 1 156 GLY n 1 157 ALA n 1 158 VAL n 1 159 PHE n 1 160 VAL n 1 161 LYS n 1 162 GLY n 1 163 LEU n 1 164 LYS n 1 165 SER n 1 166 LEU n 1 167 GLU n 1 168 ASP n 1 169 ASP n 1 170 VAL n 1 171 ARG n 1 172 THR n 1 173 ALA n 1 174 GLY n 1 175 GLU n 1 176 ALA n 1 177 LYS n 1 178 TYR n 1 179 GLU n 1 180 ALA n 1 181 GLU n 1 182 LYS n 1 183 ALA n 1 184 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain IL3000 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'TRYPANOSOMA CONGOLENSE' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 5692 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PGEX-4T-1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9U0E1_TRYCO _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q9U0E1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2Y44 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 184 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9U0E1 _struct_ref_seq.db_align_beg 40 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 224 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 40 _struct_ref_seq.pdbx_auth_seq_align_end 224 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2Y44 THR A 59 ? UNP Q9U0E1 ALA 98 'SEE REMARK 999' 98 1 1 2Y44 ? A ? ? UNP Q9U0E1 LYS 150 deletion ? 2 1 2Y44 TYR A 178 ? UNP Q9U0E1 SER 218 'SEE REMARK 999' 218 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OCS 'L-peptide linking' n 'CYSTEINESULFONIC ACID' ? 'C3 H7 N O5 S' 169.156 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2Y44 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_percent_sol 49.60 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.54 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2Y44 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 34.62 _reflns.d_resolution_high 1.65 _reflns.number_obs 20523 _reflns.number_all ? _reflns.percent_possible_obs 93.1 _reflns.pdbx_Rmerge_I_obs 0.09 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.90 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.86 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.71 _reflns_shell.percent_possible_all 89.0 _reflns_shell.Rmerge_I_obs 0.45 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.50 _reflns_shell.pdbx_redundancy 6.85 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2Y44 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 19462 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.62 _refine.ls_d_res_high 1.65 _refine.ls_percent_reflns_obs 93.10 _refine.ls_R_factor_obs 0.20176 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19923 _refine.ls_R_factor_R_free 0.25085 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 1059 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.926 _refine.B_iso_mean 22.995 _refine.aniso_B[1][1] 0.02 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.01 _refine.aniso_B[2][3] 0.01 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.121 _refine.pdbx_overall_ESU_R_Free 0.125 _refine.overall_SU_ML 0.073 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.171 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1353 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 255 _refine_hist.number_atoms_total 1618 _refine_hist.d_res_high 1.65 _refine_hist.d_res_low 34.62 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 1364 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.402 1.973 ? 1836 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.847 5.000 ? 182 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.841 24.655 ? 58 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.106 15.000 ? 248 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.595 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.093 0.200 ? 220 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.012 0.020 ? 995 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.481 1.500 ? 914 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.544 2.000 ? 1440 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 4.611 3.000 ? 450 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 7.595 4.500 ? 396 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.650 _refine_ls_shell.d_res_low 1.693 _refine_ls_shell.number_reflns_R_work 1331 _refine_ls_shell.R_factor_R_work 0.334 _refine_ls_shell.percent_reflns_obs 88.50 _refine_ls_shell.R_factor_R_free 0.381 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 93 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2Y44 _struct.title 'Crystal structure of GARP from Trypanosoma congolense' _struct.pdbx_descriptor 'GLUTAMIC ACID/ALANINE-RICH PROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Y44 _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text 'MEMBRANE PROTEIN, SURFACE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 1 ? ALA A 17 ? LYS A 40 ALA A 56 1 ? 17 HELX_P HELX_P2 2 ALA A 17 ? LYS A 54 ? ALA A 56 LYS A 93 1 ? 38 HELX_P HELX_P3 3 GLY A 56 ? THR A 108 ? GLY A 95 THR A 147 1 ? 53 HELX_P HELX_P4 4 ASP A 112 ? LYS A 121 ? ASP A 152 LYS A 161 1 ? 10 HELX_P HELX_P5 5 THR A 130 ? LEU A 145 ? THR A 170 LEU A 185 1 ? 16 HELX_P HELX_P6 6 GLY A 148 ? GLU A 184 ? GLY A 188 GLU A 224 1 ? 37 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 122 SG ? ? A CYS 48 A CYS 162 1_555 ? ? ? ? ? ? ? 2.060 ? covale1 covale ? ? A THR 108 C ? ? ? 1_555 A OCS 109 N ? ? A THR 147 A OCS 148 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A OCS 109 C ? ? ? 1_555 A GLU 110 N ? ? A OCS 148 A GLU 149 1_555 ? ? ? ? ? ? ? 1.334 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE IOD A 1228' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A 1229' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 LYS A 120 ? LYS A 160 . ? 1_565 ? 2 AC2 5 ARG A 66 ? ARG A 105 . ? 1_544 ? 3 AC2 5 THR A 123 ? THR A 163 . ? 1_555 ? 4 AC2 5 GLY A 124 ? GLY A 164 . ? 1_555 ? 5 AC2 5 HOH G . ? HOH A 2247 . ? 1_544 ? 6 AC2 5 HOH G . ? HOH A 2255 . ? 1_555 ? # _database_PDB_matrix.entry_id 2Y44 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2Y44 _atom_sites.fract_transf_matrix[1][1] 0.027637 _atom_sites.fract_transf_matrix[1][2] 0.004625 _atom_sites.fract_transf_matrix[1][3] 0.013718 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026826 _atom_sites.fract_transf_matrix[2][3] 0.010710 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028497 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 40 40 LYS LYS A . n A 1 2 VAL 2 41 41 VAL VAL A . n A 1 3 GLU 3 42 42 GLU GLU A . n A 1 4 GLU 4 43 43 GLU GLU A . n A 1 5 VAL 5 44 44 VAL VAL A . n A 1 6 GLN 6 45 45 GLN GLN A . n A 1 7 THR 7 46 46 THR THR A . n A 1 8 MET 8 47 47 MET MET A . n A 1 9 CYS 9 48 48 CYS CYS A . n A 1 10 ASP 10 49 49 ASP ASP A . n A 1 11 VAL 11 50 50 VAL VAL A . n A 1 12 ALA 12 51 51 ALA ALA A . n A 1 13 ARG 13 52 52 ARG ARG A . n A 1 14 GLN 14 53 53 GLN GLN A . n A 1 15 LEU 15 54 54 LEU LEU A . n A 1 16 ARG 16 55 55 ARG ARG A . n A 1 17 ALA 17 56 56 ALA ALA A . n A 1 18 LEU 18 57 57 LEU LEU A . n A 1 19 GLU 19 58 58 GLU GLU A . n A 1 20 THR 20 59 59 THR THR A . n A 1 21 ALA 21 60 60 ALA ALA A . n A 1 22 SER 22 61 61 SER SER A . n A 1 23 GLN 23 62 62 GLN GLN A . n A 1 24 SER 24 63 63 SER SER A . n A 1 25 ALA 25 64 64 ALA ALA A . n A 1 26 VAL 26 65 65 VAL VAL A . n A 1 27 ALA 27 66 66 ALA ALA A . n A 1 28 ALA 28 67 67 ALA ALA A . n A 1 29 VAL 29 68 68 VAL VAL A . n A 1 30 VAL 30 69 69 VAL VAL A . n A 1 31 SER 31 70 70 SER SER A . n A 1 32 SER 32 71 71 SER SER A . n A 1 33 ALA 33 72 72 ALA ALA A . n A 1 34 ARG 34 73 73 ARG ARG A . n A 1 35 GLU 35 74 74 GLU GLU A . n A 1 36 ALA 36 75 75 ALA ALA A . n A 1 37 SER 37 76 76 SER SER A . n A 1 38 GLU 38 77 77 GLU GLU A . n A 1 39 ALA 39 78 78 ALA ALA A . n A 1 40 LYS 40 79 79 LYS LYS A . n A 1 41 GLU 41 80 80 GLU GLU A . n A 1 42 ARG 42 81 81 ARG ARG A . n A 1 43 ALA 43 82 82 ALA ALA A . n A 1 44 GLU 44 83 83 GLU GLU A . n A 1 45 LYS 45 84 84 LYS LYS A . n A 1 46 ALA 46 85 85 ALA ALA A . n A 1 47 VAL 47 86 86 VAL VAL A . n A 1 48 GLU 48 87 87 GLU GLU A . n A 1 49 ARG 49 88 88 ARG ARG A . n A 1 50 ALA 50 89 89 ALA ALA A . n A 1 51 LYS 51 90 90 LYS LYS A . n A 1 52 SER 52 91 91 SER SER A . n A 1 53 LYS 53 92 92 LYS LYS A . n A 1 54 LYS 54 93 93 LYS LYS A . n A 1 55 ARG 55 94 94 ARG ARG A . n A 1 56 GLY 56 95 95 GLY GLY A . n A 1 57 VAL 57 96 96 VAL VAL A . n A 1 58 ASP 58 97 97 ASP ASP A . n A 1 59 THR 59 98 98 THR THR A . n A 1 60 ALA 60 99 99 ALA ALA A . n A 1 61 THR 61 100 100 THR THR A . n A 1 62 GLU 62 101 101 GLU GLU A . n A 1 63 ALA 63 102 102 ALA ALA A . n A 1 64 ALA 64 103 103 ALA ALA A . n A 1 65 ALA 65 104 104 ALA ALA A . n A 1 66 ARG 66 105 105 ARG ARG A . n A 1 67 ALA 67 106 106 ALA ALA A . n A 1 68 ALA 68 107 107 ALA ALA A . n A 1 69 ALA 69 108 108 ALA ALA A . n A 1 70 ALA 70 109 109 ALA ALA A . n A 1 71 ALA 71 110 110 ALA ALA A . n A 1 72 GLN 72 111 111 GLN GLN A . n A 1 73 ARG 73 112 112 ARG ARG A . n A 1 74 ALA 74 113 113 ALA ALA A . n A 1 75 GLU 75 114 114 GLU GLU A . n A 1 76 THR 76 115 115 THR THR A . n A 1 77 VAL 77 116 116 VAL VAL A . n A 1 78 VAL 78 117 117 VAL VAL A . n A 1 79 SER 79 118 118 SER SER A . n A 1 80 ASP 80 119 119 ASP ASP A . n A 1 81 ALA 81 120 120 ALA ALA A . n A 1 82 ARG 82 121 121 ARG ARG A . n A 1 83 LYS 83 122 122 LYS LYS A . n A 1 84 HIS 84 123 123 HIS HIS A . n A 1 85 ALA 85 124 124 ALA ALA A . n A 1 86 ALA 86 125 125 ALA ALA A . n A 1 87 ASP 87 126 126 ASP ASP A . n A 1 88 LEU 88 127 127 LEU LEU A . n A 1 89 THR 89 128 128 THR THR A . n A 1 90 ALA 90 129 129 ALA ALA A . n A 1 91 ALA 91 130 130 ALA ALA A . n A 1 92 SER 92 131 131 SER SER A . n A 1 93 LYS 93 132 132 LYS LYS A . n A 1 94 ASP 94 133 133 ASP ASP A . n A 1 95 ALA 95 134 134 ALA ALA A . n A 1 96 ILE 96 135 135 ILE ILE A . n A 1 97 GLU 97 136 136 GLU GLU A . n A 1 98 THR 98 137 137 THR THR A . n A 1 99 THR 99 138 138 THR THR A . n A 1 100 ASP 100 139 139 ASP ASP A . n A 1 101 GLU 101 140 140 GLU GLU A . n A 1 102 SER 102 141 141 SER SER A . n A 1 103 LEU 103 142 142 LEU LEU A . n A 1 104 ARG 104 143 143 ARG ARG A . n A 1 105 LEU 105 144 144 LEU LEU A . n A 1 106 LEU 106 145 145 LEU LEU A . n A 1 107 ALA 107 146 146 ALA ALA A . n A 1 108 THR 108 147 147 THR THR A . n A 1 109 OCS 109 148 148 OCS OCS A . n A 1 110 GLU 110 149 149 GLU GLU A . n A 1 111 ALA 111 151 151 ALA ALA A . n A 1 112 ASP 112 152 152 ASP ASP A . n A 1 113 GLU 113 153 153 GLU GLU A . n A 1 114 PRO 114 154 154 PRO PRO A . n A 1 115 ILE 115 155 155 ILE ILE A . n A 1 116 ARG 116 156 156 ARG ARG A . n A 1 117 THR 117 157 157 THR THR A . n A 1 118 ALA 118 158 158 ALA ALA A . n A 1 119 ALA 119 159 159 ALA ALA A . n A 1 120 LYS 120 160 160 LYS LYS A . n A 1 121 LYS 121 161 161 LYS LYS A . n A 1 122 CYS 122 162 162 CYS CYS A . n A 1 123 THR 123 163 163 THR THR A . n A 1 124 GLY 124 164 164 GLY GLY A . n A 1 125 ALA 125 165 165 ALA ALA A . n A 1 126 ALA 126 166 166 ALA ALA A . n A 1 127 ALA 127 167 167 ALA ALA A . n A 1 128 GLU 128 168 168 GLU GLU A . n A 1 129 VAL 129 169 169 VAL VAL A . n A 1 130 THR 130 170 170 THR THR A . n A 1 131 SER 131 171 171 SER SER A . n A 1 132 LYS 132 172 172 LYS LYS A . n A 1 133 SER 133 173 173 SER SER A . n A 1 134 LEU 134 174 174 LEU LEU A . n A 1 135 GLU 135 175 175 GLU GLU A . n A 1 136 SER 136 176 176 SER SER A . n A 1 137 ALA 137 177 177 ALA ALA A . n A 1 138 PHE 138 178 178 PHE PHE A . n A 1 139 ASP 139 179 179 ASP ASP A . n A 1 140 ALA 140 180 180 ALA ALA A . n A 1 141 LEU 141 181 181 LEU LEU A . n A 1 142 ALA 142 182 182 ALA ALA A . n A 1 143 GLU 143 183 183 GLU GLU A . n A 1 144 LEU 144 184 184 LEU LEU A . n A 1 145 LEU 145 185 185 LEU LEU A . n A 1 146 PRO 146 186 186 PRO PRO A . n A 1 147 ASP 147 187 187 ASP ASP A . n A 1 148 GLY 148 188 188 GLY GLY A . n A 1 149 ALA 149 189 189 ALA ALA A . n A 1 150 ASP 150 190 190 ASP ASP A . n A 1 151 ASP 151 191 191 ASP ASP A . n A 1 152 ILE 152 192 192 ILE ILE A . n A 1 153 ARG 153 193 193 ARG ARG A . n A 1 154 GLU 154 194 194 GLU GLU A . n A 1 155 HIS 155 195 195 HIS HIS A . n A 1 156 GLY 156 196 196 GLY GLY A . n A 1 157 ALA 157 197 197 ALA ALA A . n A 1 158 VAL 158 198 198 VAL VAL A . n A 1 159 PHE 159 199 199 PHE PHE A . n A 1 160 VAL 160 200 200 VAL VAL A . n A 1 161 LYS 161 201 201 LYS LYS A . n A 1 162 GLY 162 202 202 GLY GLY A . n A 1 163 LEU 163 203 203 LEU LEU A . n A 1 164 LYS 164 204 204 LYS LYS A . n A 1 165 SER 165 205 205 SER SER A . n A 1 166 LEU 166 206 206 LEU LEU A . n A 1 167 GLU 167 207 207 GLU GLU A . n A 1 168 ASP 168 208 208 ASP ASP A . n A 1 169 ASP 169 209 209 ASP ASP A . n A 1 170 VAL 170 210 210 VAL VAL A . n A 1 171 ARG 171 211 211 ARG ARG A . n A 1 172 THR 172 212 212 THR THR A . n A 1 173 ALA 173 213 213 ALA ALA A . n A 1 174 GLY 174 214 214 GLY GLY A . n A 1 175 GLU 175 215 215 GLU GLU A . n A 1 176 ALA 176 216 216 ALA ALA A . n A 1 177 LYS 177 217 217 LYS LYS A . n A 1 178 TYR 178 218 218 TYR TYR A . n A 1 179 GLU 179 219 219 GLU GLU A . n A 1 180 ALA 180 220 220 ALA ALA A . n A 1 181 GLU 181 221 221 GLU GLU A . n A 1 182 LYS 182 222 222 LYS LYS A . n A 1 183 ALA 183 223 223 ALA ALA A . n A 1 184 GLU 184 224 224 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD 1 1225 1225 IOD IOD A . C 2 IOD 1 1226 1226 IOD IOD A . D 2 IOD 1 1227 1227 IOD IOD A . E 2 IOD 1 1228 1228 IOD IOD A . F 3 GOL 1 1229 1229 GOL GOL A . G 4 HOH 1 2001 2001 HOH HOH A . G 4 HOH 2 2002 2002 HOH HOH A . G 4 HOH 3 2003 2003 HOH HOH A . G 4 HOH 4 2004 2004 HOH HOH A . G 4 HOH 5 2005 2005 HOH HOH A . G 4 HOH 6 2006 2006 HOH HOH A . G 4 HOH 7 2007 2007 HOH HOH A . G 4 HOH 8 2008 2008 HOH HOH A . G 4 HOH 9 2009 2009 HOH HOH A . G 4 HOH 10 2010 2010 HOH HOH A . G 4 HOH 11 2011 2011 HOH HOH A . G 4 HOH 12 2012 2012 HOH HOH A . G 4 HOH 13 2013 2013 HOH HOH A . G 4 HOH 14 2014 2014 HOH HOH A . G 4 HOH 15 2015 2015 HOH HOH A . G 4 HOH 16 2016 2016 HOH HOH A . G 4 HOH 17 2017 2017 HOH HOH A . G 4 HOH 18 2018 2018 HOH HOH A . G 4 HOH 19 2019 2019 HOH HOH A . G 4 HOH 20 2020 2020 HOH HOH A . G 4 HOH 21 2021 2021 HOH HOH A . G 4 HOH 22 2022 2022 HOH HOH A . G 4 HOH 23 2023 2023 HOH HOH A . G 4 HOH 24 2024 2024 HOH HOH A . G 4 HOH 25 2025 2025 HOH HOH A . G 4 HOH 26 2026 2026 HOH HOH A . G 4 HOH 27 2027 2027 HOH HOH A . G 4 HOH 28 2028 2028 HOH HOH A . G 4 HOH 29 2029 2029 HOH HOH A . G 4 HOH 30 2030 2030 HOH HOH A . G 4 HOH 31 2031 2031 HOH HOH A . G 4 HOH 32 2032 2032 HOH HOH A . G 4 HOH 33 2033 2033 HOH HOH A . G 4 HOH 34 2034 2034 HOH HOH A . G 4 HOH 35 2035 2035 HOH HOH A . G 4 HOH 36 2036 2036 HOH HOH A . G 4 HOH 37 2037 2037 HOH HOH A . G 4 HOH 38 2038 2038 HOH HOH A . G 4 HOH 39 2039 2039 HOH HOH A . G 4 HOH 40 2040 2040 HOH HOH A . G 4 HOH 41 2041 2041 HOH HOH A . G 4 HOH 42 2042 2042 HOH HOH A . G 4 HOH 43 2043 2043 HOH HOH A . G 4 HOH 44 2044 2044 HOH HOH A . G 4 HOH 45 2045 2045 HOH HOH A . G 4 HOH 46 2046 2046 HOH HOH A . G 4 HOH 47 2047 2047 HOH HOH A . G 4 HOH 48 2048 2048 HOH HOH A . G 4 HOH 49 2049 2049 HOH HOH A . G 4 HOH 50 2050 2050 HOH HOH A . G 4 HOH 51 2051 2051 HOH HOH A . G 4 HOH 52 2052 2052 HOH HOH A . G 4 HOH 53 2053 2053 HOH HOH A . G 4 HOH 54 2054 2054 HOH HOH A . G 4 HOH 55 2055 2055 HOH HOH A . G 4 HOH 56 2056 2056 HOH HOH A . G 4 HOH 57 2057 2057 HOH HOH A . G 4 HOH 58 2058 2058 HOH HOH A . G 4 HOH 59 2059 2059 HOH HOH A . G 4 HOH 60 2060 2060 HOH HOH A . G 4 HOH 61 2061 2061 HOH HOH A . G 4 HOH 62 2062 2062 HOH HOH A . G 4 HOH 63 2063 2063 HOH HOH A . G 4 HOH 64 2064 2064 HOH HOH A . G 4 HOH 65 2065 2065 HOH HOH A . G 4 HOH 66 2066 2066 HOH HOH A . G 4 HOH 67 2067 2067 HOH HOH A . G 4 HOH 68 2068 2068 HOH HOH A . G 4 HOH 69 2069 2069 HOH HOH A . G 4 HOH 70 2070 2070 HOH HOH A . G 4 HOH 71 2071 2071 HOH HOH A . G 4 HOH 72 2072 2072 HOH HOH A . G 4 HOH 73 2073 2073 HOH HOH A . G 4 HOH 74 2074 2074 HOH HOH A . G 4 HOH 75 2075 2075 HOH HOH A . G 4 HOH 76 2076 2076 HOH HOH A . G 4 HOH 77 2077 2077 HOH HOH A . G 4 HOH 78 2078 2078 HOH HOH A . G 4 HOH 79 2079 2079 HOH HOH A . G 4 HOH 80 2080 2080 HOH HOH A . G 4 HOH 81 2081 2081 HOH HOH A . G 4 HOH 82 2082 2082 HOH HOH A . G 4 HOH 83 2083 2083 HOH HOH A . G 4 HOH 84 2084 2084 HOH HOH A . G 4 HOH 85 2085 2085 HOH HOH A . G 4 HOH 86 2086 2086 HOH HOH A . G 4 HOH 87 2087 2087 HOH HOH A . G 4 HOH 88 2088 2088 HOH HOH A . G 4 HOH 89 2089 2089 HOH HOH A . G 4 HOH 90 2090 2090 HOH HOH A . G 4 HOH 91 2091 2091 HOH HOH A . G 4 HOH 92 2092 2092 HOH HOH A . G 4 HOH 93 2093 2093 HOH HOH A . G 4 HOH 94 2094 2094 HOH HOH A . G 4 HOH 95 2095 2095 HOH HOH A . G 4 HOH 96 2096 2096 HOH HOH A . G 4 HOH 97 2097 2097 HOH HOH A . G 4 HOH 98 2098 2098 HOH HOH A . G 4 HOH 99 2099 2099 HOH HOH A . G 4 HOH 100 2100 2100 HOH HOH A . G 4 HOH 101 2101 2101 HOH HOH A . G 4 HOH 102 2102 2102 HOH HOH A . G 4 HOH 103 2103 2103 HOH HOH A . G 4 HOH 104 2104 2104 HOH HOH A . G 4 HOH 105 2105 2105 HOH HOH A . G 4 HOH 106 2106 2106 HOH HOH A . G 4 HOH 107 2107 2107 HOH HOH A . G 4 HOH 108 2108 2108 HOH HOH A . G 4 HOH 109 2109 2109 HOH HOH A . G 4 HOH 110 2110 2110 HOH HOH A . G 4 HOH 111 2111 2111 HOH HOH A . G 4 HOH 112 2112 2112 HOH HOH A . G 4 HOH 113 2113 2113 HOH HOH A . G 4 HOH 114 2114 2114 HOH HOH A . G 4 HOH 115 2115 2115 HOH HOH A . G 4 HOH 116 2116 2116 HOH HOH A . G 4 HOH 117 2117 2117 HOH HOH A . G 4 HOH 118 2118 2118 HOH HOH A . G 4 HOH 119 2119 2119 HOH HOH A . G 4 HOH 120 2120 2120 HOH HOH A . G 4 HOH 121 2121 2121 HOH HOH A . G 4 HOH 122 2122 2122 HOH HOH A . G 4 HOH 123 2123 2123 HOH HOH A . G 4 HOH 124 2124 2124 HOH HOH A . G 4 HOH 125 2125 2125 HOH HOH A . G 4 HOH 126 2126 2126 HOH HOH A . G 4 HOH 127 2127 2127 HOH HOH A . G 4 HOH 128 2128 2128 HOH HOH A . G 4 HOH 129 2129 2129 HOH HOH A . G 4 HOH 130 2130 2130 HOH HOH A . G 4 HOH 131 2131 2131 HOH HOH A . G 4 HOH 132 2132 2132 HOH HOH A . G 4 HOH 133 2133 2133 HOH HOH A . G 4 HOH 134 2134 2134 HOH HOH A . G 4 HOH 135 2135 2135 HOH HOH A . G 4 HOH 136 2136 2136 HOH HOH A . G 4 HOH 137 2137 2137 HOH HOH A . G 4 HOH 138 2138 2138 HOH HOH A . G 4 HOH 139 2139 2139 HOH HOH A . G 4 HOH 140 2140 2140 HOH HOH A . G 4 HOH 141 2141 2141 HOH HOH A . G 4 HOH 142 2142 2142 HOH HOH A . G 4 HOH 143 2143 2143 HOH HOH A . G 4 HOH 144 2144 2144 HOH HOH A . G 4 HOH 145 2145 2145 HOH HOH A . G 4 HOH 146 2146 2146 HOH HOH A . G 4 HOH 147 2147 2147 HOH HOH A . G 4 HOH 148 2148 2148 HOH HOH A . G 4 HOH 149 2149 2149 HOH HOH A . G 4 HOH 150 2150 2150 HOH HOH A . G 4 HOH 151 2151 2151 HOH HOH A . G 4 HOH 152 2152 2152 HOH HOH A . G 4 HOH 153 2153 2153 HOH HOH A . G 4 HOH 154 2154 2154 HOH HOH A . G 4 HOH 155 2155 2155 HOH HOH A . G 4 HOH 156 2156 2156 HOH HOH A . G 4 HOH 157 2157 2157 HOH HOH A . G 4 HOH 158 2158 2158 HOH HOH A . G 4 HOH 159 2159 2159 HOH HOH A . G 4 HOH 160 2160 2160 HOH HOH A . G 4 HOH 161 2161 2161 HOH HOH A . G 4 HOH 162 2162 2162 HOH HOH A . G 4 HOH 163 2163 2163 HOH HOH A . G 4 HOH 164 2164 2164 HOH HOH A . G 4 HOH 165 2165 2165 HOH HOH A . G 4 HOH 166 2166 2166 HOH HOH A . G 4 HOH 167 2167 2167 HOH HOH A . G 4 HOH 168 2168 2168 HOH HOH A . G 4 HOH 169 2169 2169 HOH HOH A . G 4 HOH 170 2170 2170 HOH HOH A . G 4 HOH 171 2171 2171 HOH HOH A . G 4 HOH 172 2172 2172 HOH HOH A . G 4 HOH 173 2173 2173 HOH HOH A . G 4 HOH 174 2174 2174 HOH HOH A . G 4 HOH 175 2175 2175 HOH HOH A . G 4 HOH 176 2176 2176 HOH HOH A . G 4 HOH 177 2177 2177 HOH HOH A . G 4 HOH 178 2178 2178 HOH HOH A . G 4 HOH 179 2179 2179 HOH HOH A . G 4 HOH 180 2180 2180 HOH HOH A . G 4 HOH 181 2181 2181 HOH HOH A . G 4 HOH 182 2182 2182 HOH HOH A . G 4 HOH 183 2183 2183 HOH HOH A . G 4 HOH 184 2184 2184 HOH HOH A . G 4 HOH 185 2185 2185 HOH HOH A . G 4 HOH 186 2186 2186 HOH HOH A . G 4 HOH 187 2187 2187 HOH HOH A . G 4 HOH 188 2188 2188 HOH HOH A . G 4 HOH 189 2189 2189 HOH HOH A . G 4 HOH 190 2190 2190 HOH HOH A . G 4 HOH 191 2191 2191 HOH HOH A . G 4 HOH 192 2192 2192 HOH HOH A . G 4 HOH 193 2193 2193 HOH HOH A . G 4 HOH 194 2194 2194 HOH HOH A . G 4 HOH 195 2195 2195 HOH HOH A . G 4 HOH 196 2196 2196 HOH HOH A . G 4 HOH 197 2197 2197 HOH HOH A . G 4 HOH 198 2198 2198 HOH HOH A . G 4 HOH 199 2199 2199 HOH HOH A . G 4 HOH 200 2200 2200 HOH HOH A . G 4 HOH 201 2201 2201 HOH HOH A . G 4 HOH 202 2202 2202 HOH HOH A . G 4 HOH 203 2203 2203 HOH HOH A . G 4 HOH 204 2204 2204 HOH HOH A . G 4 HOH 205 2205 2205 HOH HOH A . G 4 HOH 206 2206 2206 HOH HOH A . G 4 HOH 207 2207 2207 HOH HOH A . G 4 HOH 208 2208 2208 HOH HOH A . G 4 HOH 209 2209 2209 HOH HOH A . G 4 HOH 210 2210 2210 HOH HOH A . G 4 HOH 211 2211 2211 HOH HOH A . G 4 HOH 212 2212 2212 HOH HOH A . G 4 HOH 213 2213 2213 HOH HOH A . G 4 HOH 214 2214 2214 HOH HOH A . G 4 HOH 215 2215 2215 HOH HOH A . G 4 HOH 216 2216 2216 HOH HOH A . G 4 HOH 217 2217 2217 HOH HOH A . G 4 HOH 218 2218 2218 HOH HOH A . G 4 HOH 219 2219 2219 HOH HOH A . G 4 HOH 220 2220 2220 HOH HOH A . G 4 HOH 221 2221 2221 HOH HOH A . G 4 HOH 222 2222 2222 HOH HOH A . G 4 HOH 223 2223 2223 HOH HOH A . G 4 HOH 224 2224 2224 HOH HOH A . G 4 HOH 225 2225 2225 HOH HOH A . G 4 HOH 226 2226 2226 HOH HOH A . G 4 HOH 227 2227 2227 HOH HOH A . G 4 HOH 228 2228 2228 HOH HOH A . G 4 HOH 229 2229 2229 HOH HOH A . G 4 HOH 230 2230 2230 HOH HOH A . G 4 HOH 231 2231 2231 HOH HOH A . G 4 HOH 232 2232 2232 HOH HOH A . G 4 HOH 233 2233 2233 HOH HOH A . G 4 HOH 234 2234 2234 HOH HOH A . G 4 HOH 235 2235 2235 HOH HOH A . G 4 HOH 236 2236 2236 HOH HOH A . G 4 HOH 237 2237 2237 HOH HOH A . G 4 HOH 238 2238 2238 HOH HOH A . G 4 HOH 239 2239 2239 HOH HOH A . G 4 HOH 240 2240 2240 HOH HOH A . G 4 HOH 241 2241 2241 HOH HOH A . G 4 HOH 242 2242 2242 HOH HOH A . G 4 HOH 243 2243 2243 HOH HOH A . G 4 HOH 244 2244 2244 HOH HOH A . G 4 HOH 245 2245 2245 HOH HOH A . G 4 HOH 246 2246 2246 HOH HOH A . G 4 HOH 247 2247 2247 HOH HOH A . G 4 HOH 248 2248 2248 HOH HOH A . G 4 HOH 249 2249 2249 HOH HOH A . G 4 HOH 250 2250 2250 HOH HOH A . G 4 HOH 251 2251 2251 HOH HOH A . G 4 HOH 252 2252 2252 HOH HOH A . G 4 HOH 253 2253 2253 HOH HOH A . G 4 HOH 254 2254 2254 HOH HOH A . G 4 HOH 255 2255 2255 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id OCS _pdbx_struct_mod_residue.label_seq_id 109 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id OCS _pdbx_struct_mod_residue.auth_seq_id 148 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id CYS _pdbx_struct_mod_residue.details 'CYSTEINESULFONIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-03-30 2 'Structure model' 1 1 2012-11-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0072 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 autoSHARP phasing . ? 4 # _pdbx_entry_details.entry_id 2Y44 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;GENE CLONED FROM A SPECIFIC STRAIN AND WITH THE KNOWN LEVEL OF POLYMORPHISM IN THIS FAMILY OF GENES, THERE IS NO EXACT SEQUENCE PUBLISHED. HOWEVER, SEQUENCES FROM SEVERAL CLONES (SEVERAL PCR REACTIONS) INDICATE THAT DIFFERENCES IN SEQUENCE ARE SIMPLY ONE OF THE MANY POLYMORPHISMS. THUS THERE IS ONLY A "LOOSE" SEQUENCE REFERENCE CROSS-REFERENCE POSSIBLE. ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2109 ? ? O A HOH 2202 ? ? 1.84 2 1 OE2 A GLU 194 ? ? O A HOH 2223 ? ? 1.89 3 1 OE1 A GLU 221 ? ? O A HOH 2249 ? ? 1.95 4 1 NE2 A GLN 45 ? ? O A HOH 2006 ? ? 2.04 5 1 O A HOH 2060 ? ? O A HOH 2061 ? ? 2.14 6 1 OE2 A GLU 153 ? ? O A HOH 2179 ? ? 2.15 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 2016 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2125 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_544 _pdbx_validate_symm_contact.dist 2.15 # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 C _pdbx_validate_polymer_linkage.auth_asym_id_1 A _pdbx_validate_polymer_linkage.auth_comp_id_1 GLU _pdbx_validate_polymer_linkage.auth_seq_id_1 149 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 N _pdbx_validate_polymer_linkage.auth_asym_id_2 A _pdbx_validate_polymer_linkage.auth_comp_id_2 ALA _pdbx_validate_polymer_linkage.auth_seq_id_2 151 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 3.27 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 2022 ? 6.06 . 2 1 O ? A HOH 2028 ? 5.93 . 3 1 O ? A HOH 2037 ? 6.74 . 4 1 O ? A HOH 2038 ? 6.43 . 5 1 O ? A HOH 2053 ? 6.43 . 6 1 O ? A HOH 2121 ? 5.90 . # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IODIDE ION' IOD 3 GLYCEROL GOL 4 water HOH #