HEADER METAL BINDING PROTEIN/TRANSFERASE 11-JAN-11 2Y4V TITLE CRYSTAL STRUCTURE OF HUMAN CALMODULIN IN COMPLEX WITH A DAP KINASE-1 TITLE 2 MUTANT (W305Y) PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DEATH-ASSOCIATED PROTEIN KINASE 1,; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: RESIDUES 302-320; COMPND 9 SYNONYM: DAP KINASE 1; COMPND 10 EC: 2.7.11.1; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET8; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS METAL BINDING PROTEIN-TRANSFERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.DE DIEGO,F.LEHMANN,M.WILMANNS REVDAT 2 20-DEC-23 2Y4V 1 REMARK LINK REVDAT 1 28-DEC-11 2Y4V 0 JRNL AUTH I.DE DIEGO,J.KUPER,F.LEHMANN,M.WILMANNS JRNL TITL A JOURNEY THROUGH THE DAP KINASE ARCHITECTURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 14099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 743 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1040 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1201 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.57000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -1.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.90000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.170 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.055 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1211 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1627 ; 1.712 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 156 ; 7.037 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 58 ;30.401 ;26.034 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 217 ;18.264 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;24.458 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 187 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 906 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 781 ; 1.346 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1240 ; 2.359 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 430 ; 3.018 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 387 ; 4.910 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6527 -1.2498 20.7359 REMARK 3 T TENSOR REMARK 3 T11: 0.0084 T22: 0.0268 REMARK 3 T33: 0.0289 T12: 0.0305 REMARK 3 T13: 0.0053 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: -0.2114 L22: 0.1505 REMARK 3 L33: 0.6924 L12: 0.1020 REMARK 3 L13: 0.2464 L23: 0.0238 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: -0.0377 S13: -0.0388 REMARK 3 S21: -0.0471 S22: 0.0346 S23: 0.0277 REMARK 3 S31: -0.0197 S32: 0.0412 S33: -0.0188 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 1A-3A AND 78A-80A ARE DISORDERED AND REMOVED REMARK 3 FROM MODEL. REMARK 4 REMARK 4 2Y4V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1290046949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99989 REMARK 200 MONOCHROMATOR : SI CRYSTAL REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14844 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 23.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1YR5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 25(W/V) PEG 3000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 32.78050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.96150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 32.78050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.96150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2146 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2149 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN B, TRP 305 TO TYR REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 78 REMARK 465 ASP A 79 REMARK 465 THR A 80 REMARK 465 ARG B 302 REMARK 465 LYS B 303 REMARK 465 ARG B 320 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 GLN A 42 CG CD OE1 NE2 REMARK 470 ASP A 81 CG OD1 OD2 REMARK 470 SER A 82 OG REMARK 470 GLU A 85 OE1 OE2 REMARK 470 ARG A 87 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 108 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 116 CB CG CD CE NZ REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 LYS A 149 O CD CE NZ REMARK 470 LYS B 304 CG CD CE NZ REMARK 470 GLN B 307 CD OE1 NE2 REMARK 470 ARG B 310 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 118 OE2 GLU A 121 2.04 REMARK 500 O HOH A 2081 O HOH A 2100 2.04 REMARK 500 NZ LYS A 95 O HOH A 2112 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 98 GLY A 99 -63.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2017 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A2062 DISTANCE = 5.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1151 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 21 OD1 REMARK 620 2 ASP A 23 OD1 79.9 REMARK 620 3 ASP A 25 OD1 82.5 74.5 REMARK 620 4 THR A 27 O 85.0 153.1 81.7 REMARK 620 5 GLU A 32 OE2 95.8 78.7 153.0 125.2 REMARK 620 6 GLU A 32 OE1 110.6 129.6 153.2 76.6 51.8 REMARK 620 7 HOH A2031 O 160.5 82.8 84.4 107.4 89.3 87.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1152 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD1 REMARK 620 2 ASP A 59 OD1 78.6 REMARK 620 3 ASN A 61 OD1 89.1 74.7 REMARK 620 4 THR A 63 O 90.2 154.7 82.6 REMARK 620 5 GLU A 68 OE1 107.6 126.9 154.2 78.0 REMARK 620 6 GLU A 68 OE2 87.4 77.0 151.6 125.6 51.6 REMARK 620 7 HOH A2095 O 159.7 81.5 89.6 109.8 81.3 84.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1153 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 94 OD1 REMARK 620 2 ASP A 96 OD1 87.8 REMARK 620 3 ASN A 98 OD1 85.3 75.8 REMARK 620 4 TYR A 100 O 79.2 154.0 80.7 REMARK 620 5 GLU A 105 OE1 97.5 128.5 155.6 76.0 REMARK 620 6 GLU A 105 OE2 98.8 74.8 150.0 129.3 53.8 REMARK 620 7 HOH A2113 O 173.7 90.3 88.4 100.1 88.4 86.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1150 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 130 OD1 REMARK 620 2 ASP A 132 OD1 81.4 REMARK 620 3 ASP A 134 OD1 89.2 81.0 REMARK 620 4 GLN A 136 O 87.4 157.3 79.1 REMARK 620 5 GLU A 141 OE1 116.7 123.5 145.1 79.2 REMARK 620 6 GLU A 141 OE2 94.3 74.1 154.0 126.8 52.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1153 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1J7P RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF CALCIUM CALMODULIN C- TERMINAL DOMAIN REMARK 900 RELATED ID: 2F3Z RELATED DB: PDB REMARK 900 CALMODULIN/IQ-AA DOMAIN COMPLEX REMARK 900 RELATED ID: 1NKF RELATED DB: PDB REMARK 900 CALCIUM-BINDING PEPTIDE, NMR, 30 STRUCTURES REMARK 900 RELATED ID: 2X0G RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF A DAP-KINASE CALMODULIN COMPLEX REMARK 900 RELATED ID: 1K93 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EDEMA FACTOR COMPLEXED WITH CALMODULIN REMARK 900 RELATED ID: 1XFV RELATED DB: PDB REMARK 900 FULL LENTH EF COMPLEXED CAM AND 3'-DEOXY-ATP REMARK 900 RELATED ID: 1SK6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EF3/CALMODULIN COMPLEXED WITHCAMP/ REMARK 900 PYROPHOSPHATE REMARK 900 RELATED ID: 1Y6W RELATED DB: PDB REMARK 900 TRAPPED INTERMEDIATE OF CALMODULIN REMARK 900 RELATED ID: 1JKL RELATED DB: PDB REMARK 900 1.6A X-RAY STRUCTURE OF BINARY COMPLEX OF A CATALYTICDOMAIN OF REMARK 900 DEATH-ASSOCIATED PROTEIN KINASE WITH ATP ANALOGUE REMARK 900 RELATED ID: 1IWQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MARCKS CALMODULIN BINDING DOMAINPEPTIDE REMARK 900 COMPLEXED WITH CA2+/CALMODULIN REMARK 900 RELATED ID: 1K90 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EDEMA FACTOR WITH CALMODULIN AND3'-DATP REMARK 900 RELATED ID: 1YRT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF THE ADENYLYL CYCLAESCATALYTIC DOMAIN REMARK 900 OF ADENYLYL CYCLASE TOXIN OF BORDETELLAPERTUSSIS IN PRESENCE OF C- REMARK 900 TERMINAL CALMODULIN REMARK 900 RELATED ID: 2W73 RELATED DB: PDB REMARK 900 HIGH-RESOLUTION STRUCTURE OF THE COMPLEX BETWEEN CALMODULIN AND A REMARK 900 PEPTIDE FROM CALCINEURIN A REMARK 900 RELATED ID: 1CLL RELATED DB: PDB REMARK 900 CALMODULIN (VERTEBRATE) REMARK 900 RELATED ID: 1LVC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EF-CAM COMPLEXED WITH 3'-ANT-2'-DATP REMARK 900 RELATED ID: 1CDL RELATED DB: PDB REMARK 900 CALMODULIN COMPLEXED WITH CALMODULIN-BINDING PEPTIDE FROM SMOOTH REMARK 900 MUSCLE MYOSIN LIGHT CHAIN KINASE REMARK 900 RELATED ID: 1JKT RELATED DB: PDB REMARK 900 TETRAGONAL CRYSTAL FORM OF A CATALYTIC DOMAIN OF DEATH-ASSOCIATED REMARK 900 PROTEIN KINASE REMARK 900 RELATED ID: 1XFU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULL-EF-DELTA64 COMPLEX WITH CAM REMARK 900 RELATED ID: 1XFY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULLEF-CAM WITH 1 UM CALCIUM REMARK 900 RELATED ID: 2F3Y RELATED DB: PDB REMARK 900 CALMODULIN/IQ DOMAIN COMPLEX REMARK 900 RELATED ID: 1JKS RELATED DB: PDB REMARK 900 1.5A X-RAY STRUCTURE OF APO FORM OF A CATALYTIC DOMAIN OFDEATH- REMARK 900 ASSOCIATED PROTEIN KINASE REMARK 900 RELATED ID: 1XFX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULL-EF-CAM COMPLEX AT 10 MM CALCIUM REMARK 900 RELATED ID: 1S26 RELATED DB: PDB REMARK 900 STRUCTURE OF ANTHRAX EDEMA FACTOR-CALMODULIN- ALPHA,BETA- REMARK 900 METHYLENEADENOSINE 5'-TRIPHOSPHATE COMPLEX REVEALS ANALTERNATIVE REMARK 900 MODE OF ATP BINDING TO THE CATALYTIC SITE REMARK 900 RELATED ID: 1J7O RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF CALCIUM-CALMODULIN N- TERMINAL DOMAIN REMARK 900 RELATED ID: 1JKK RELATED DB: PDB REMARK 900 2.4A X-RAY STRUCTURE OF TERNARY COMPLEX OF A CATALYTICDOMAIN OF REMARK 900 DEATH-ASSOCIATED PROTEIN KINASE WITH ATPANALOGUE AND MG. REMARK 900 RELATED ID: 1CTR RELATED DB: PDB REMARK 900 CALMODULIN COMPLEXED WITH TRIFLUOPERAZINE (1:1 COMPLEX) REMARK 900 RELATED ID: 2Y0A RELATED DB: PDB REMARK 900 STRUCTURE OF DAPK1 CONSTRUCT RESIDUES 1-304 REMARK 900 RELATED ID: 2W4J RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF A DAP-KINASE 2-277 REMARK 900 RELATED ID: 2W4K RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF A DAP-KINASE 2-302 REMARK 900 RELATED ID: 1YRU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF THE ADENYLYL CYCLAESCATALYTIC DOMAIN REMARK 900 OF ADENYLYL CYCLASE TOXIN OF BORDETELLAPERTUSSIS IN PRESENCE OF C- REMARK 900 TERMINAL CALMODULIN AND 1MMCALCIUM CHLORIDE REMARK 900 RELATED ID: 1WRZ RELATED DB: PDB REMARK 900 CALMODULIN COMPLEXED WITH A PEPTIDE FROM A HUMAN DEATH-ASSOCIATED REMARK 900 PROTEIN KINASE REMARK 900 RELATED ID: 2XZS RELATED DB: PDB REMARK 900 DEATH ASSOCIATED PROTEIN KINASE 1 RESIDUES 1-312 REMARK 900 RELATED ID: 2WEL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SU6656-BOUND CALCIUM/ CALMODULIN-DEPENDENT REMARK 900 PROTEIN KINASE II DELTA IN COMPLEX WITH CALMODULIN REMARK 900 RELATED ID: 2V02 RELATED DB: PDB REMARK 900 RECOMBINANT VERTEBRATE CALMODULIN COMPLEXED WITH BA REMARK 900 RELATED ID: 1P4F RELATED DB: PDB REMARK 900 DEATH ASSOCIATED PROTEIN KINASE CATALYTIC DOMAIN WITH REMARK 900 BOUNDINHIBITOR FRAGMENT REMARK 900 RELATED ID: 1XFZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULLEF-CAM WITH 1 MM CALCIUM REMARK 900 RELATED ID: 2V01 RELATED DB: PDB REMARK 900 RECOMBINANT VERTEBRATE CALMODULIN COMPLEXED WITH PB REMARK 900 RELATED ID: 1XFW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULL-EF-CAM COMPLEXED WITH CAMP REMARK 900 RELATED ID: 1PK0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EF3-CAM COMPLEXED WITH PMEAPP REMARK 900 RELATED ID: 2BE6 RELATED DB: PDB REMARK 900 2.0 A CRYSTAL STRUCTURE OF THE CAV1.2 IQ DOMAIN-CA/CAMCOMPLEX REMARK 900 RELATED ID: 1IG1 RELATED DB: PDB REMARK 900 1.8A X-RAY STRUCTURE OF TERNARY COMPLEX OF A CATALYTICDOMAIN OF REMARK 900 DEATH-ASSOCIATED PROTEIN KINASE WITH ATPANALOGUE AND MN. REMARK 900 RELATED ID: 2VAY RELATED DB: PDB REMARK 900 CALMODULIN COMPLEXED WITH CAV1.1 IQ PEPTIDE REMARK 900 RELATED ID: 1SW8 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF HUMAN N60DCALMODULIN REMARK 900 REFINED WITH PARAMAGNETISM BASED STRATEGY REMARK 900 RELATED ID: 1ZOT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF THE CYAA/C- CAM WITH PMEAPP REMARK 900 RELATED ID: 2XUU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DAP-KINASE 1 MUTANT REMARK 900 RELATED ID: 1AJI RELATED DB: PDB REMARK 900 APO-CALMODULIN IN COMPLEX WITH BRUSH BORDER MYOSIN I IQ MOTIF, REMARK 900 THEORETICAL MODEL REMARK 900 RELATED ID: 2Y4P RELATED DB: PDB REMARK 900 DIMERIC STRUCTURE OF DAPK-1 CATALYTIC DOMAIN DBREF 2Y4V A 1 149 UNP P62158 CALM_HUMAN 1 149 DBREF 2Y4V B 302 320 UNP P53355 DAPK1_HUMAN 302 320 SEQADV 2Y4V TYR B 305 UNP P53355 TRP 305 ENGINEERED MUTATION SEQRES 1 A 149 MET ALA ASP GLN LEU THR GLU GLU GLN ILE ALA GLU PHE SEQRES 2 A 149 LYS GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP GLY SEQRES 3 A 149 THR ILE THR THR LYS GLU LEU GLY THR VAL MET ARG SER SEQRES 4 A 149 LEU GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MET SEQRES 5 A 149 ILE ASN GLU VAL ASP ALA ASP GLY ASN GLY THR ILE ASP SEQRES 6 A 149 PHE PRO GLU PHE LEU THR MET MET ALA ARG LYS MET LYS SEQRES 7 A 149 ASP THR ASP SER GLU GLU GLU ILE ARG GLU ALA PHE ARG SEQRES 8 A 149 VAL PHE ASP LYS ASP GLY ASN GLY TYR ILE SER ALA ALA SEQRES 9 A 149 GLU LEU ARG HIS VAL MET THR ASN LEU GLY GLU LYS LEU SEQRES 10 A 149 THR ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA ASP SEQRES 11 A 149 ILE ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU PHE VAL SEQRES 12 A 149 GLN MET MET THR ALA LYS SEQRES 1 B 19 ARG LYS LYS TYR LYS GLN SER VAL ARG LEU ILE SER LEU SEQRES 2 B 19 CYS GLN ARG LEU SER ARG HET CA A1150 1 HET CA A1151 1 HET CA A1152 1 HET CA A1153 1 HETNAM CA CALCIUM ION FORMUL 3 CA 4(CA 2+) FORMUL 7 HOH *165(H2 O) HELIX 1 1 THR A 6 ASP A 21 1 16 HELIX 2 2 THR A 29 LEU A 40 1 12 HELIX 3 3 THR A 45 ASP A 57 1 13 HELIX 4 4 ASP A 65 MET A 77 1 13 HELIX 5 5 ASP A 81 ASP A 94 1 14 HELIX 6 6 SER A 102 LEU A 113 1 12 HELIX 7 7 THR A 118 ARG A 127 1 10 HELIX 8 8 TYR A 139 ALA A 148 1 10 HELIX 9 9 LYS B 304 SER B 319 1 16 SHEET 1 AA 2 TYR A 100 ILE A 101 0 SHEET 2 AA 2 VAL A 137 ASN A 138 -1 O VAL A 137 N ILE A 101 LINK OD1 ASP A 21 CA CA A1151 1555 1555 2.25 LINK OD1 ASP A 23 CA CA A1151 1555 1555 2.47 LINK OD1 ASP A 25 CA CA A1151 1555 1555 2.37 LINK O THR A 27 CA CA A1151 1555 1555 2.36 LINK OE2 GLU A 32 CA CA A1151 1555 1555 2.58 LINK OE1 GLU A 32 CA CA A1151 1555 1555 2.42 LINK OD1 ASP A 57 CA CA A1152 1555 1555 2.28 LINK OD1 ASP A 59 CA CA A1152 1555 1555 2.50 LINK OD1 ASN A 61 CA CA A1152 1555 1555 2.32 LINK O THR A 63 CA CA A1152 1555 1555 2.38 LINK OE1 GLU A 68 CA CA A1152 1555 1555 2.34 LINK OE2 GLU A 68 CA CA A1152 1555 1555 2.67 LINK OD1 ASP A 94 CA CA A1153 1555 1555 2.28 LINK OD1 ASP A 96 CA CA A1153 1555 1555 2.46 LINK OD1 ASN A 98 CA CA A1153 1555 1555 2.44 LINK O TYR A 100 CA CA A1153 1555 1555 2.31 LINK OE1 GLU A 105 CA CA A1153 1555 1555 2.39 LINK OE2 GLU A 105 CA CA A1153 1555 1555 2.47 LINK OD1 ASP A 130 CA CA A1150 1555 1555 2.04 LINK OD1 ASP A 132 CA CA A1150 1555 1555 2.40 LINK OD1 ASP A 134 CA CA A1150 1555 1555 2.50 LINK O GLN A 136 CA CA A1150 1555 1555 2.31 LINK OE1 GLU A 141 CA CA A1150 1555 1555 2.46 LINK OE2 GLU A 141 CA CA A1150 1555 1555 2.45 LINK CA CA A1151 O HOH A2031 1555 1555 2.38 LINK CA CA A1152 O HOH A2095 1555 1555 2.41 LINK CA CA A1153 O HOH A2113 1555 1555 2.34 SITE 1 AC1 6 ASP A 130 ASP A 132 ASP A 134 GLN A 136 SITE 2 AC1 6 GLU A 141 HOH A2153 SITE 1 AC2 6 ASP A 21 ASP A 23 ASP A 25 THR A 27 SITE 2 AC2 6 GLU A 32 HOH A2031 SITE 1 AC3 6 ASP A 57 ASP A 59 ASN A 61 THR A 63 SITE 2 AC3 6 GLU A 68 HOH A2095 SITE 1 AC4 6 ASP A 94 ASP A 96 ASN A 98 TYR A 100 SITE 2 AC4 6 GLU A 105 HOH A2113 CRYST1 65.561 33.923 74.257 90.00 92.21 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015253 0.000000 0.000589 0.00000 SCALE2 0.000000 0.029479 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013477 0.00000