data_2Y5M # _entry.id 2Y5M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2Y5M pdb_00002y5m 10.2210/pdb2y5m/pdb PDBE EBI-44797 ? ? WWPDB D_1290044797 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-05-11 2 'Structure model' 1 1 2013-01-30 3 'Structure model' 1 2 2019-03-06 4 'Structure model' 1 3 2023-03-29 5 'Structure model' 2 0 2023-11-15 6 'Structure model' 2 1 2024-02-07 7 'Structure model' 2 2 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Experimental preparation' 6 3 'Structure model' Other 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' Other 10 4 'Structure model' 'Structure summary' 11 5 'Structure model' 'Atomic model' 12 5 'Structure model' 'Data collection' 13 5 'Structure model' 'Derived calculations' 14 6 'Structure model' 'Refinement description' 15 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' exptl_crystal_grow 2 3 'Structure model' pdbx_database_proc 3 3 'Structure model' pdbx_database_status 4 3 'Structure model' struct_conn 5 4 'Structure model' audit_author 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_database_status 8 4 'Structure model' struct_site 9 5 'Structure model' atom_site 10 5 'Structure model' atom_site_anisotrop 11 5 'Structure model' chem_comp_atom 12 5 'Structure model' chem_comp_bond 13 5 'Structure model' struct_conn 14 6 'Structure model' pdbx_initial_refinement_model 15 7 'Structure model' pdbx_entry_details 16 7 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_exptl_crystal_grow.method' 2 3 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_audit_author.identifier_ORCID' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' 7 4 'Structure model' '_pdbx_database_status.status_code_sf' 8 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 11 5 'Structure model' '_atom_site.auth_atom_id' 12 5 'Structure model' '_atom_site.label_atom_id' 13 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 14 5 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 15 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 16 7 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Y5M _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-01-14 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1NT6 unspecified 'F1-GRAMICIDIN C IN SODIUM DODECYL SULFATE MICELLES (NMR)' PDB 1JO3 unspecified 'GRAMICIDIN B IN SODIUM DODECYL SULFATE MICELLES (NMR)' PDB 1ALZ unspecified 'GRAMICIDIN D FROM BACILLUS BREVIS (ETHANOL SOLVATE)' PDB 1GRM unspecified 'GRAMICIDIN A (NMR, 5 STRUCTURES)' PDB 1JO4 unspecified 'GRAMICIDIN C IN SODIUM DODECYL SULFATE MICELLES (NMR)' PDB 1BDW unspecified 'GRAMICIDIN D FROM BACILLUS BREVIS (ACTIVE FORM)' PDB 1NRU unspecified 'GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE MICELLES IN THEPRESENCE OF EXCESS NA+ (NMR)' PDB 1W5U unspecified 'GRAMICIDIN D FROM BACILLUS BREVIS (ETHANOL SOLVATE)' PDB 1TKQ unspecified 'SOLUTION STRUCTURE OF A LINKED UNSYMMETRIC GRAMICIDIN IN AMEMBRANE-ISOELECTRICAL SOLVENTS MIXTURE IN THE PRESENCE OFCSCL' PDB 1MAG unspecified 'GRAMICIDIN A IN HYDRATED DMPC BILAYERS, SOLID STATE NMR' PDB 2IZQ unspecified 'GRAMICIDIN D COMPLEX WITH KI' PDB 1C4D unspecified 'GRAMICIDIN CSCL COMPLEX' PDB 1AV2 unspecified 'GRAMICIDIN A/CSCL COMPLEX, ACTIVE AS A DIMER' PDB 1KQE unspecified 'SOLUTION STRUCTURE OF A LINKED SHORTENED GRAMICIDIN A INBENZENE/ACETONE 10:1' PDB 1MIC unspecified 'GRAMICIDIN A: LEFT-HANDED PARALLEL DOUBLE HELICAL FORM IN METHANOL IN THE PRESENCE OF CACL2, NMR, 20 STRUCTURES' PDB 1NT5 unspecified 'F1-GRAMICIDIN A IN SODIUM DODECYL SULFATE MICELLES (NMR)' PDB 1AL4 unspecified 'GRAMICIDIN D FROM BACILLUS BREVIS (N- PROPANOL SOLVATE)' PDB 1GMK unspecified 'GRAMICIDIN/KSCN COMPLEX' PDB 1NG8 unspecified 'G15-GRAMICIDIN A IN SODIUM DODECYL SULFATE MICELLES (NMR)' PDB 1NRM unspecified 'GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE MICELLES (NMR)' PDB 1JNO unspecified 'GRAMICIDIN A IN SODIUM DODECYL SULFATE MICELLES (NMR)' PDB 1ALX unspecified 'GRAMICIDIN D FROM BACILLUS BREVIS (METHANOL SOLVATE)' PDB 2XDC unspecified 'STRUCTURE OF LINEAR GRAMICIDIN D OBTAINED USING TYPE I CRYSTALS GROWN IN A LIPID CUBIC PHASE.' PDB 2Y6N unspecified 'STRUCTURE OF LINEAR GRAMICIDIN D OBTAINED USING TYPE I CRYSTALS GROWN IN A 8.8 MONOACYLGLYCEROL LIPID CUBIC PHASE.' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hoefer, N.' 1 ? 'Aragao, D.' 2 0000-0002-6551-4657 'Caffrey, M.' 3 ? # _citation.id primary _citation.title ;Membrane Protein Crystallization in Lipidic Mesophases. Hosting Lipid Effects on the Crystallization and Structure of a Transmembrane Peptide ; _citation.journal_abbrev 'Cryst.Growth Des.' _citation.journal_volume 11 _citation.page_first 1182 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1528-7483 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22933857 _citation.pdbx_database_id_DOI 10.1021/CG101384P # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hoefer, N.' 1 ? primary 'Aragao, D.' 2 ? primary 'Lyons, J.' 3 ? primary 'Caffrey, M.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'VAL-GRAMICIDIN A' 1882.294 6 ? ? ? ? 2 non-polymer syn 'POLYETHYLENE GLYCOL (N=34)' 1529.829 3 ? ? ? ? 3 water nat water 18.015 3 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'GRAMICIDIN D' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(FVA)GA(DLE)A(DVA)V(DVA)W(DLE)W(DLE)W(DLE)W(ETA)' _entity_poly.pdbx_seq_one_letter_code_can VGALAVVVWLWLWLWX _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POLYETHYLENE GLYCOL (N=34)' 15P 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 FVA n 1 2 GLY n 1 3 ALA n 1 4 DLE n 1 5 ALA n 1 6 DVA n 1 7 VAL n 1 8 DVA n 1 9 TRP n 1 10 DLE n 1 11 TRP n 1 12 DLE n 1 13 TRP n 1 14 DLE n 1 15 TRP n 1 16 ETA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'BREVIBACILLUS BREVIS' _entity_src_nat.pdbx_ncbi_taxonomy_id 1393 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc 8246 _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 15P non-polymer . 'POLYETHYLENE GLYCOL (N=34)' 'PEG 1500' 'C69 H140 O35' 1529.829 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 DLE 'D-peptide linking' . D-LEUCINE ? 'C6 H13 N O2' 131.173 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 ETA 'L-peptide COOH carboxy terminus' . ETHANOLAMINE ? 'C2 H7 N O' 61.083 FVA 'L-peptide linking' n N-formyl-L-valine ? 'C6 H11 N O3' 145.156 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 FVA 1 1 1 FVA FVA A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 DLE 4 4 4 DLE DLE A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 DVA 6 6 6 DVA DVA A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 DVA 8 8 8 DVA DVA A . n A 1 9 TRP 9 9 9 TRP TRP A . n A 1 10 DLE 10 10 10 DLE DLE A . n A 1 11 TRP 11 11 11 TRP TRP A . n A 1 12 DLE 12 12 12 DLE DLE A . n A 1 13 TRP 13 13 13 TRP TRP A . n A 1 14 DLE 14 14 14 DLE DLE A . n A 1 15 TRP 15 15 15 TRP TRP A . n A 1 16 ETA 16 16 16 ETA ETA A . n B 1 1 FVA 1 1 1 FVA FVA B . n B 1 2 GLY 2 2 2 GLY GLY B . n B 1 3 ALA 3 3 3 ALA ALA B . n B 1 4 DLE 4 4 4 DLE DLE B . n B 1 5 ALA 5 5 5 ALA ALA B . n B 1 6 DVA 6 6 6 DVA DVA B . n B 1 7 VAL 7 7 7 VAL VAL B . n B 1 8 DVA 8 8 8 DVA DVA B . n B 1 9 TRP 9 9 9 TRP TRP B . n B 1 10 DLE 10 10 10 DLE DLE B . n B 1 11 TRP 11 11 11 TRP TRP B . n B 1 12 DLE 12 12 12 DLE DLE B . n B 1 13 TRP 13 13 13 TRP TRP B . n B 1 14 DLE 14 14 14 DLE DLE B . n B 1 15 TRP 15 15 15 TRP TRP B . n B 1 16 ETA 16 16 16 ETA ETA B . n C 1 1 FVA 1 1 1 FVA FVA C . n C 1 2 GLY 2 2 2 GLY GLY C . n C 1 3 ALA 3 3 3 ALA ALA C . n C 1 4 DLE 4 4 4 DLE DLE C . n C 1 5 ALA 5 5 5 ALA ALA C . n C 1 6 DVA 6 6 6 DVA DVA C . n C 1 7 VAL 7 7 7 VAL VAL C . n C 1 8 DVA 8 8 8 DVA DVA C . n C 1 9 TRP 9 9 9 TRP TRP C . n C 1 10 DLE 10 10 10 DLE DLE C . n C 1 11 TRP 11 11 11 TRP TRP C . n C 1 12 DLE 12 12 12 DLE DLE C . n C 1 13 TRP 13 13 13 TRP TRP C . n C 1 14 DLE 14 14 14 DLE DLE C . n C 1 15 TRP 15 15 15 TRP TRP C . n C 1 16 ETA 16 16 16 ETA ETA C . n D 1 1 FVA 1 1 1 FVA FVA D . n D 1 2 GLY 2 2 2 GLY GLY D . n D 1 3 ALA 3 3 3 ALA ALA D . n D 1 4 DLE 4 4 4 DLE DLE D . n D 1 5 ALA 5 5 5 ALA ALA D . n D 1 6 DVA 6 6 6 DVA DVA D . n D 1 7 VAL 7 7 7 VAL VAL D . n D 1 8 DVA 8 8 8 DVA DVA D . n D 1 9 TRP 9 9 9 TRP TRP D . n D 1 10 DLE 10 10 10 DLE DLE D . n D 1 11 TRP 11 11 11 TRP TRP D . n D 1 12 DLE 12 12 12 DLE DLE D . n D 1 13 TRP 13 13 13 TRP TRP D . n D 1 14 DLE 14 14 14 DLE DLE D . n D 1 15 TRP 15 15 15 TRP TRP D . n D 1 16 ETA 16 16 16 ETA ETA D . n E 1 1 FVA 1 1 1 FVA FVA E . n E 1 2 GLY 2 2 2 GLY GLY E . n E 1 3 ALA 3 3 3 ALA ALA E . n E 1 4 DLE 4 4 4 DLE DLE E . n E 1 5 ALA 5 5 5 ALA ALA E . n E 1 6 DVA 6 6 6 DVA DVA E . n E 1 7 VAL 7 7 7 VAL VAL E . n E 1 8 DVA 8 8 8 DVA DVA E . n E 1 9 TRP 9 9 9 TRP TRP E . n E 1 10 DLE 10 10 10 DLE DLE E . n E 1 11 TRP 11 11 11 TRP TRP E . n E 1 12 DLE 12 12 12 DLE DLE E . n E 1 13 TRP 13 13 13 TRP TRP E . n E 1 14 DLE 14 14 14 DLE DLE E . n E 1 15 TRP 15 15 15 TRP TRP E . n E 1 16 ETA 16 16 16 ETA ETA E . n F 1 1 FVA 1 1 1 FVA FVA F . n F 1 2 GLY 2 2 2 GLY GLY F . n F 1 3 ALA 3 3 3 ALA ALA F . n F 1 4 DLE 4 4 4 DLE DLE F . n F 1 5 ALA 5 5 5 ALA ALA F . n F 1 6 DVA 6 6 6 DVA DVA F . n F 1 7 VAL 7 7 7 VAL VAL F . n F 1 8 DVA 8 8 8 DVA DVA F . n F 1 9 TRP 9 9 9 TRP TRP F . n F 1 10 DLE 10 10 10 DLE DLE F . n F 1 11 TRP 11 11 11 TRP TRP F . n F 1 12 DLE 12 12 12 DLE DLE F . n F 1 13 TRP 13 13 13 TRP TRP F . n F 1 14 DLE 14 14 14 DLE DLE F . n F 1 15 TRP 15 15 15 TRP TRP F . n F 1 16 ETA 16 16 16 ETA ETA F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 15P 1 1001 1001 15P 15P A . H 2 15P 1 1002 1002 15P 15P A . I 2 15P 1 1003 1003 15P 15P A . J 3 HOH 1 2001 2001 HOH HOH A . K 3 HOH 1 2001 2001 HOH HOH C . L 3 HOH 1 2001 2001 HOH HOH E . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A 15P 1001 ? OXT ? G 15P 1 OXT 2 1 N 1 A 15P 1001 ? C1 ? G 15P 1 C1 3 1 N 1 A 15P 1001 ? C34 ? G 15P 1 C34 4 1 N 1 A 15P 1001 ? O17 ? G 15P 1 O17 5 1 N 1 A 15P 1001 ? C35 ? G 15P 1 C35 6 1 N 1 A 15P 1001 ? C36 ? G 15P 1 C36 7 1 N 1 A 15P 1001 ? O18 ? G 15P 1 O18 8 1 N 1 A 15P 1001 ? C37 ? G 15P 1 C37 9 1 N 1 A 15P 1001 ? C38 ? G 15P 1 C38 10 1 N 1 A 15P 1001 ? O19 ? G 15P 1 O19 11 1 N 1 A 15P 1001 ? C39 ? G 15P 1 C39 12 1 N 1 A 15P 1001 ? C40 ? G 15P 1 C40 13 1 N 1 A 15P 1001 ? O20 ? G 15P 1 O20 14 1 N 1 A 15P 1001 ? C41 ? G 15P 1 C41 15 1 N 1 A 15P 1001 ? C42 ? G 15P 1 C42 16 1 N 1 A 15P 1001 ? O21 ? G 15P 1 O21 17 1 N 1 A 15P 1001 ? C43 ? G 15P 1 C43 18 1 N 1 A 15P 1001 ? C44 ? G 15P 1 C44 19 1 N 1 A 15P 1001 ? O22 ? G 15P 1 O22 20 1 N 1 A 15P 1001 ? C45 ? G 15P 1 C45 21 1 N 1 A 15P 1001 ? C46 ? G 15P 1 C46 22 1 N 1 A 15P 1001 ? O23 ? G 15P 1 O23 23 1 N 1 A 15P 1001 ? C47 ? G 15P 1 C47 24 1 N 1 A 15P 1001 ? C48 ? G 15P 1 C48 25 1 N 1 A 15P 1001 ? O24 ? G 15P 1 O24 26 1 N 1 A 15P 1001 ? C49 ? G 15P 1 C49 27 1 N 1 A 15P 1001 ? C50 ? G 15P 1 C50 28 1 N 1 A 15P 1001 ? O25 ? G 15P 1 O25 29 1 N 1 A 15P 1001 ? C51 ? G 15P 1 C51 30 1 N 1 A 15P 1001 ? C52 ? G 15P 1 C52 31 1 N 1 A 15P 1001 ? O26 ? G 15P 1 O26 32 1 N 1 A 15P 1001 ? C53 ? G 15P 1 C53 33 1 N 1 A 15P 1001 ? C54 ? G 15P 1 C54 34 1 N 1 A 15P 1001 ? O27 ? G 15P 1 O27 35 1 N 1 A 15P 1001 ? C55 ? G 15P 1 C55 36 1 N 1 A 15P 1001 ? C56 ? G 15P 1 C56 37 1 N 1 A 15P 1001 ? O28 ? G 15P 1 O28 38 1 N 1 A 15P 1001 ? C57 ? G 15P 1 C57 39 1 N 1 A 15P 1001 ? C58 ? G 15P 1 C58 40 1 N 1 A 15P 1001 ? O29 ? G 15P 1 O29 41 1 N 1 A 15P 1001 ? C59 ? G 15P 1 C59 42 1 N 1 A 15P 1001 ? C60 ? G 15P 1 C60 43 1 N 1 A 15P 1001 ? O30 ? G 15P 1 O30 44 1 N 1 A 15P 1001 ? C61 ? G 15P 1 C61 45 1 N 1 A 15P 1001 ? C62 ? G 15P 1 C62 46 1 N 1 A 15P 1001 ? O31 ? G 15P 1 O31 47 1 N 1 A 15P 1001 ? C63 ? G 15P 1 C63 48 1 N 1 A 15P 1001 ? C64 ? G 15P 1 C64 49 1 N 1 A 15P 1001 ? O32 ? G 15P 1 O32 50 1 N 1 A 15P 1001 ? C65 ? G 15P 1 C65 51 1 N 1 A 15P 1001 ? C66 ? G 15P 1 C66 52 1 N 1 A 15P 1001 ? O33 ? G 15P 1 O33 53 1 N 1 A 15P 1001 ? C67 ? G 15P 1 C67 54 1 N 1 A 15P 1001 ? C68 ? G 15P 1 C68 55 1 N 1 A 15P 1001 ? O34 ? G 15P 1 O34 56 1 N 1 A 15P 1001 ? CM ? G 15P 1 CM 57 1 N 1 A 15P 1002 ? OXT ? H 15P 1 OXT 58 1 N 1 A 15P 1002 ? C15 ? H 15P 1 C15 59 1 N 1 A 15P 1002 ? C16 ? H 15P 1 C16 60 1 N 1 A 15P 1002 ? O8 ? H 15P 1 O8 61 1 N 1 A 15P 1002 ? C17 ? H 15P 1 C17 62 1 N 1 A 15P 1002 ? C18 ? H 15P 1 C18 63 1 N 1 A 15P 1002 ? O9 ? H 15P 1 O9 64 1 N 1 A 15P 1002 ? C19 ? H 15P 1 C19 65 1 N 1 A 15P 1002 ? C20 ? H 15P 1 C20 66 1 N 1 A 15P 1002 ? O10 ? H 15P 1 O10 67 1 N 1 A 15P 1002 ? C21 ? H 15P 1 C21 68 1 N 1 A 15P 1002 ? C22 ? H 15P 1 C22 69 1 N 1 A 15P 1002 ? O11 ? H 15P 1 O11 70 1 N 1 A 15P 1002 ? C23 ? H 15P 1 C23 71 1 N 1 A 15P 1002 ? C24 ? H 15P 1 C24 72 1 N 1 A 15P 1002 ? O12 ? H 15P 1 O12 73 1 N 1 A 15P 1002 ? C25 ? H 15P 1 C25 74 1 N 1 A 15P 1002 ? C26 ? H 15P 1 C26 75 1 N 1 A 15P 1002 ? O13 ? H 15P 1 O13 76 1 N 1 A 15P 1002 ? C27 ? H 15P 1 C27 77 1 N 1 A 15P 1002 ? C28 ? H 15P 1 C28 78 1 N 1 A 15P 1002 ? O14 ? H 15P 1 O14 79 1 N 1 A 15P 1002 ? C29 ? H 15P 1 C29 80 1 N 1 A 15P 1002 ? C30 ? H 15P 1 C30 81 1 N 1 A 15P 1002 ? O15 ? H 15P 1 O15 82 1 N 1 A 15P 1002 ? C31 ? H 15P 1 C31 83 1 N 1 A 15P 1002 ? C32 ? H 15P 1 C32 84 1 N 1 A 15P 1002 ? O16 ? H 15P 1 O16 85 1 N 1 A 15P 1002 ? C33 ? H 15P 1 C33 86 1 N 1 A 15P 1002 ? C34 ? H 15P 1 C34 87 1 N 1 A 15P 1002 ? O17 ? H 15P 1 O17 88 1 N 1 A 15P 1002 ? C35 ? H 15P 1 C35 89 1 N 1 A 15P 1002 ? C36 ? H 15P 1 C36 90 1 N 1 A 15P 1002 ? O18 ? H 15P 1 O18 91 1 N 1 A 15P 1002 ? C37 ? H 15P 1 C37 92 1 N 1 A 15P 1002 ? C38 ? H 15P 1 C38 93 1 N 1 A 15P 1002 ? O19 ? H 15P 1 O19 94 1 N 1 A 15P 1002 ? C39 ? H 15P 1 C39 95 1 N 1 A 15P 1002 ? C40 ? H 15P 1 C40 96 1 N 1 A 15P 1002 ? O20 ? H 15P 1 O20 97 1 N 1 A 15P 1002 ? C41 ? H 15P 1 C41 98 1 N 1 A 15P 1002 ? C42 ? H 15P 1 C42 99 1 N 1 A 15P 1002 ? O21 ? H 15P 1 O21 100 1 N 1 A 15P 1002 ? C43 ? H 15P 1 C43 101 1 N 1 A 15P 1002 ? C44 ? H 15P 1 C44 102 1 N 1 A 15P 1002 ? O22 ? H 15P 1 O22 103 1 N 1 A 15P 1002 ? C45 ? H 15P 1 C45 104 1 N 1 A 15P 1002 ? C46 ? H 15P 1 C46 105 1 N 1 A 15P 1002 ? O23 ? H 15P 1 O23 106 1 N 1 A 15P 1002 ? C47 ? H 15P 1 C47 107 1 N 1 A 15P 1002 ? C48 ? H 15P 1 C48 108 1 N 1 A 15P 1002 ? O24 ? H 15P 1 O24 109 1 N 1 A 15P 1002 ? C49 ? H 15P 1 C49 110 1 N 1 A 15P 1002 ? C50 ? H 15P 1 C50 111 1 N 1 A 15P 1002 ? O25 ? H 15P 1 O25 112 1 N 1 A 15P 1002 ? C51 ? H 15P 1 C51 113 1 N 1 A 15P 1002 ? C52 ? H 15P 1 C52 114 1 N 1 A 15P 1002 ? O26 ? H 15P 1 O26 115 1 N 1 A 15P 1002 ? C53 ? H 15P 1 C53 116 1 N 1 A 15P 1002 ? C54 ? H 15P 1 C54 117 1 N 1 A 15P 1002 ? O27 ? H 15P 1 O27 118 1 N 1 A 15P 1002 ? C55 ? H 15P 1 C55 119 1 N 1 A 15P 1002 ? C56 ? H 15P 1 C56 120 1 N 1 A 15P 1002 ? O28 ? H 15P 1 O28 121 1 N 1 A 15P 1002 ? C57 ? H 15P 1 C57 122 1 N 1 A 15P 1002 ? C58 ? H 15P 1 C58 123 1 N 1 A 15P 1002 ? O29 ? H 15P 1 O29 124 1 N 1 A 15P 1002 ? C59 ? H 15P 1 C59 125 1 N 1 A 15P 1002 ? C60 ? H 15P 1 C60 126 1 N 1 A 15P 1002 ? O30 ? H 15P 1 O30 127 1 N 1 A 15P 1002 ? C61 ? H 15P 1 C61 128 1 N 1 A 15P 1002 ? C62 ? H 15P 1 C62 129 1 N 1 A 15P 1002 ? O31 ? H 15P 1 O31 130 1 N 1 A 15P 1002 ? C63 ? H 15P 1 C63 131 1 N 1 A 15P 1002 ? C64 ? H 15P 1 C64 132 1 N 1 A 15P 1002 ? O32 ? H 15P 1 O32 133 1 N 1 A 15P 1002 ? C65 ? H 15P 1 C65 134 1 N 1 A 15P 1002 ? C66 ? H 15P 1 C66 135 1 N 1 A 15P 1002 ? O33 ? H 15P 1 O33 136 1 N 1 A 15P 1002 ? C67 ? H 15P 1 C67 137 1 N 1 A 15P 1002 ? C68 ? H 15P 1 C68 138 1 N 1 A 15P 1002 ? O34 ? H 15P 1 O34 139 1 N 1 A 15P 1002 ? CM ? H 15P 1 CM 140 1 N 1 A 15P 1003 ? C15 ? I 15P 1 C15 141 1 N 1 A 15P 1003 ? C16 ? I 15P 1 C16 142 1 N 1 A 15P 1003 ? O8 ? I 15P 1 O8 143 1 N 1 A 15P 1003 ? C17 ? I 15P 1 C17 144 1 N 1 A 15P 1003 ? C18 ? I 15P 1 C18 145 1 N 1 A 15P 1003 ? O9 ? I 15P 1 O9 146 1 N 1 A 15P 1003 ? C19 ? I 15P 1 C19 147 1 N 1 A 15P 1003 ? C20 ? I 15P 1 C20 148 1 N 1 A 15P 1003 ? O10 ? I 15P 1 O10 149 1 N 1 A 15P 1003 ? C21 ? I 15P 1 C21 150 1 N 1 A 15P 1003 ? C22 ? I 15P 1 C22 151 1 N 1 A 15P 1003 ? O11 ? I 15P 1 O11 152 1 N 1 A 15P 1003 ? C23 ? I 15P 1 C23 153 1 N 1 A 15P 1003 ? C24 ? I 15P 1 C24 154 1 N 1 A 15P 1003 ? O12 ? I 15P 1 O12 155 1 N 1 A 15P 1003 ? C25 ? I 15P 1 C25 156 1 N 1 A 15P 1003 ? C26 ? I 15P 1 C26 157 1 N 1 A 15P 1003 ? O13 ? I 15P 1 O13 158 1 N 1 A 15P 1003 ? C27 ? I 15P 1 C27 159 1 N 1 A 15P 1003 ? C28 ? I 15P 1 C28 160 1 N 1 A 15P 1003 ? O14 ? I 15P 1 O14 161 1 N 1 A 15P 1003 ? C29 ? I 15P 1 C29 162 1 N 1 A 15P 1003 ? C30 ? I 15P 1 C30 163 1 N 1 A 15P 1003 ? O15 ? I 15P 1 O15 164 1 N 1 A 15P 1003 ? C31 ? I 15P 1 C31 165 1 N 1 A 15P 1003 ? C32 ? I 15P 1 C32 166 1 N 1 A 15P 1003 ? O16 ? I 15P 1 O16 167 1 N 1 A 15P 1003 ? C33 ? I 15P 1 C33 168 1 N 1 A 15P 1003 ? C34 ? I 15P 1 C34 169 1 N 1 A 15P 1003 ? O17 ? I 15P 1 O17 170 1 N 1 A 15P 1003 ? C35 ? I 15P 1 C35 171 1 N 1 A 15P 1003 ? C36 ? I 15P 1 C36 172 1 N 1 A 15P 1003 ? O18 ? I 15P 1 O18 173 1 N 1 A 15P 1003 ? C37 ? I 15P 1 C37 174 1 N 1 A 15P 1003 ? C38 ? I 15P 1 C38 175 1 N 1 A 15P 1003 ? O19 ? I 15P 1 O19 176 1 N 1 A 15P 1003 ? C39 ? I 15P 1 C39 177 1 N 1 A 15P 1003 ? C40 ? I 15P 1 C40 178 1 N 1 A 15P 1003 ? O20 ? I 15P 1 O20 179 1 N 1 A 15P 1003 ? C41 ? I 15P 1 C41 180 1 N 1 A 15P 1003 ? C42 ? I 15P 1 C42 181 1 N 1 A 15P 1003 ? O21 ? I 15P 1 O21 182 1 N 1 A 15P 1003 ? C43 ? I 15P 1 C43 183 1 N 1 A 15P 1003 ? C44 ? I 15P 1 C44 184 1 N 1 A 15P 1003 ? O22 ? I 15P 1 O22 185 1 N 1 A 15P 1003 ? C45 ? I 15P 1 C45 186 1 N 1 A 15P 1003 ? C46 ? I 15P 1 C46 187 1 N 1 A 15P 1003 ? O23 ? I 15P 1 O23 188 1 N 1 A 15P 1003 ? C47 ? I 15P 1 C47 189 1 N 1 A 15P 1003 ? C48 ? I 15P 1 C48 190 1 N 1 A 15P 1003 ? O24 ? I 15P 1 O24 191 1 N 1 A 15P 1003 ? C49 ? I 15P 1 C49 192 1 N 1 A 15P 1003 ? C50 ? I 15P 1 C50 193 1 N 1 A 15P 1003 ? O25 ? I 15P 1 O25 194 1 N 1 A 15P 1003 ? C51 ? I 15P 1 C51 195 1 N 1 A 15P 1003 ? C52 ? I 15P 1 C52 196 1 N 1 A 15P 1003 ? O26 ? I 15P 1 O26 197 1 N 1 A 15P 1003 ? C53 ? I 15P 1 C53 198 1 N 1 A 15P 1003 ? C54 ? I 15P 1 C54 199 1 N 1 A 15P 1003 ? O27 ? I 15P 1 O27 200 1 N 1 A 15P 1003 ? C55 ? I 15P 1 C55 201 1 N 1 A 15P 1003 ? C56 ? I 15P 1 C56 202 1 N 1 A 15P 1003 ? O28 ? I 15P 1 O28 203 1 N 1 A 15P 1003 ? C57 ? I 15P 1 C57 204 1 N 1 A 15P 1003 ? C58 ? I 15P 1 C58 205 1 N 1 A 15P 1003 ? O29 ? I 15P 1 O29 206 1 N 1 A 15P 1003 ? C59 ? I 15P 1 C59 207 1 N 1 A 15P 1003 ? C60 ? I 15P 1 C60 208 1 N 1 A 15P 1003 ? O30 ? I 15P 1 O30 209 1 N 1 A 15P 1003 ? C61 ? I 15P 1 C61 210 1 N 1 A 15P 1003 ? C62 ? I 15P 1 C62 211 1 N 1 A 15P 1003 ? O31 ? I 15P 1 O31 212 1 N 1 A 15P 1003 ? C63 ? I 15P 1 C63 213 1 N 1 A 15P 1003 ? C64 ? I 15P 1 C64 214 1 N 1 A 15P 1003 ? O32 ? I 15P 1 O32 215 1 N 1 A 15P 1003 ? C65 ? I 15P 1 C65 216 1 N 1 A 15P 1003 ? C66 ? I 15P 1 C66 217 1 N 1 A 15P 1003 ? O33 ? I 15P 1 O33 218 1 N 1 A 15P 1003 ? C67 ? I 15P 1 C67 219 1 N 1 A 15P 1003 ? C68 ? I 15P 1 C68 220 1 N 1 A 15P 1003 ? O34 ? I 15P 1 O34 221 1 N 1 A 15P 1003 ? CM ? I 15P 1 CM # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0066 ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 PHASER phasing . ? 4 # _cell.entry_id 2Y5M _cell.length_a 30.639 _cell.length_b 62.794 _cell.length_c 30.664 _cell.angle_alpha 90.00 _cell.angle_beta 100.02 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y5M _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # _exptl.entry_id 2Y5M _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.58 _exptl_crystal.density_percent_sol 52.3 _exptl_crystal.description 'DATA WERE COLLECTED USING A COLLIMATED MINIBEAM WITH A 10 MICRON BEAMSIZE' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'LIPIDIC CUBIC PHASE' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;25 %(W/V) PEG 3350, 0.2 M LISO4, 0.1 M BIS TRIS AT PH 5.5, LIPIDIC CUBIC PHASE OF 7.7 MAG (SN-1-O-(CIS-7)TETRADECENYLGLYCEROL) WAS USED IN A RATIO OF 1:20 (MOL/MOL) GRAMICIDIN D TO LIPID. ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARRESEARCH MX-300' _diffrn_detector.pdbx_collection_date 2008-08-05 _diffrn_detector.details 'SI(111) DOUBLE CRYSTAL' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL CRYO-COOLED' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8266 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_wavelength 0.8266 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2Y5M _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.20 _reflns.d_resolution_high 1.08 _reflns.number_obs 46435 _reflns.number_all ? _reflns.percent_possible_obs 94.9 _reflns.pdbx_Rmerge_I_obs 0.10 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.80 _reflns.B_iso_Wilson_estimate 5.5 _reflns.pdbx_redundancy 6.3 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.08 _reflns_shell.d_res_low 1.10 _reflns_shell.percent_possible_all 65.0 _reflns_shell.Rmerge_I_obs 0.42 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.40 _reflns_shell.pdbx_redundancy 3.6 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2Y5M _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 44055 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.20 _refine.ls_d_res_high 1.08 _refine.ls_percent_reflns_obs 94.95 _refine.ls_R_factor_obs 0.13167 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.13041 _refine.ls_R_factor_R_free 0.15461 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 2380 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.974 _refine.correlation_coeff_Fo_to_Fc_free 0.970 _refine.B_iso_mean 12.70 _refine.aniso_B[1][1] 0.34 _refine.aniso_B[2][2] -0.65 _refine.aniso_B[3][3] 0.34 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.11 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. RESIDUE 15P A1001 IN THIS ENTRY WAS NAMED PEG-A IN THE PRIMARY CITATION. RESIDUES 15P A1002 AND 15P A1003 IN THIS ENTRY WERE NAMED PEG-B AND PEG-B' RESPECTIVELY IN THE PRIMARY CITATION. ; _refine.pdbx_starting_model 'PDB ENTRY 1AL4' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.024 _refine.pdbx_overall_ESU_R_Free 0.026 _refine.overall_SU_ML 0.015 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 0.709 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 816 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 91 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 910 _refine_hist.d_res_high 1.08 _refine_hist.d_res_low 30.20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.022 ? 1001 'X-RAY DIFFRACTION' ? r_bond_other_d 0.007 0.020 ? 1021 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.704 1.939 ? 1322 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.813 3.000 ? 2282 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.732 5.000 ? 84 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.474 20.000 ? 24 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 9.794 15.000 ? 41 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.151 0.200 ? 150 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.014 0.020 ? 821 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 203 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.828 1.500 ? 511 'X-RAY DIFFRACTION' ? r_mcbond_other 1.368 1.500 ? 212 'X-RAY DIFFRACTION' ? r_mcangle_it 4.018 2.000 ? 771 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 5.307 3.000 ? 490 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 7.117 4.500 ? 550 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 2.878 3.000 ? 2022 'X-RAY DIFFRACTION' ? r_sphericity_free 16.436 3.000 ? 3 'X-RAY DIFFRACTION' ? r_sphericity_bonded 7.531 3.000 ? 1984 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.080 _refine_ls_shell.d_res_low 1.109 _refine_ls_shell.number_reflns_R_work 2239 _refine_ls_shell.R_factor_R_work 0.207 _refine_ls_shell.percent_reflns_obs 65.17 _refine_ls_shell.R_factor_R_free 0.205 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 132 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 0.134000 -0.044000 -0.990000 -0.096000 -0.995000 0.031000 -0.986000 0.090000 -0.138000 -5.08583 -4.63332 -26.18152 2 given ? -0.995000 0.096000 0.039000 0.094000 0.995000 -0.033000 -0.042000 -0.029000 -0.999000 -19.51232 1.05452 -39.77778 # _database_PDB_matrix.entry_id 2Y5M _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2Y5M _struct.title 'STRUCTURE OF LINEAR GRAMICIDIN D OBTAINED USING TYPE I CRYSTALS GROWN IN A 7.7 MONOACYLGLYCEROL LIPID CUBIC PHASE.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Y5M _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'ANTIBIOTIC, ION CHANNEL, MESOPHASE, SPONGE PHASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 3 ? K N N 3 ? L N N 3 ? # _struct_ref.id 1 _struct_ref.db_name NOR _struct_ref.db_code NOR00243 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession NOR00243 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2Y5M A 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 2 1 2Y5M B 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 3 1 2Y5M C 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 4 1 2Y5M D 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 5 1 2Y5M E 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 6 1 2Y5M F 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3220 ? 1 MORE -9.1 ? 1 'SSA (A^2)' 3990 ? 2 'ABSA (A^2)' 2620 ? 2 MORE -13.6 ? 2 'SSA (A^2)' 2990 ? 3 'ABSA (A^2)' 2620 ? 3 MORE -14.0 ? 3 'SSA (A^2)' 2990 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,G,H,I,J 2 1 C,D,K 3 1 E,F,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A FVA 1 C ? ? ? 1_555 A GLY 2 N ? ? A FVA 1 A GLY 2 1_555 ? ? ? ? ? ? ? 1.310 ? ? covale2 covale both ? A ALA 3 C ? ? ? 1_555 A DLE 4 N ? ? A ALA 3 A DLE 4 1_555 ? ? ? ? ? ? ? 1.301 ? ? covale3 covale both ? A DLE 4 C ? ? ? 1_555 A ALA 5 N ? ? A DLE 4 A ALA 5 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale4 covale both ? A ALA 5 C ? ? ? 1_555 A DVA 6 N ? ? A ALA 5 A DVA 6 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale5 covale both ? A DVA 6 C ? ? ? 1_555 A VAL 7 N ? ? A DVA 6 A VAL 7 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale6 covale both ? A VAL 7 C ? ? ? 1_555 A DVA 8 N ? ? A VAL 7 A DVA 8 1_555 ? ? ? ? ? ? ? 1.309 ? ? covale7 covale both ? A DVA 8 C ? ? ? 1_555 A TRP 9 N ? ? A DVA 8 A TRP 9 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale8 covale both ? A TRP 9 C ? ? ? 1_555 A DLE 10 N ? ? A TRP 9 A DLE 10 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale9 covale both ? A DLE 10 C ? ? ? 1_555 A TRP 11 N ? ? A DLE 10 A TRP 11 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale10 covale both ? A TRP 11 C ? ? ? 1_555 A DLE 12 N ? ? A TRP 11 A DLE 12 1_555 ? ? ? ? ? ? ? 1.310 ? ? covale11 covale both ? A DLE 12 C ? ? ? 1_555 A TRP 13 N ? ? A DLE 12 A TRP 13 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale12 covale both ? A TRP 13 C ? ? ? 1_555 A DLE 14 N ? ? A TRP 13 A DLE 14 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale13 covale both ? A DLE 14 C ? ? ? 1_555 A TRP 15 N ? ? A DLE 14 A TRP 15 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale14 covale both ? A TRP 15 C ? ? ? 1_555 A ETA 16 N B ? A TRP 15 A ETA 16 1_555 ? ? ? ? ? ? ? 1.359 ? ? covale15 covale both ? A TRP 15 C ? ? ? 1_555 A ETA 16 N A ? A TRP 15 A ETA 16 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale16 covale both ? B FVA 1 C ? ? ? 1_555 B GLY 2 N ? ? B FVA 1 B GLY 2 1_555 ? ? ? ? ? ? ? 1.312 ? ? covale17 covale both ? B ALA 3 C ? ? ? 1_555 B DLE 4 N ? ? B ALA 3 B DLE 4 1_555 ? ? ? ? ? ? ? 1.299 ? ? covale18 covale both ? B DLE 4 C ? ? ? 1_555 B ALA 5 N ? ? B DLE 4 B ALA 5 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale19 covale both ? B ALA 5 C ? ? ? 1_555 B DVA 6 N ? ? B ALA 5 B DVA 6 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale20 covale both ? B DVA 6 C ? ? ? 1_555 B VAL 7 N ? ? B DVA 6 B VAL 7 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale21 covale both ? B VAL 7 C ? ? ? 1_555 B DVA 8 N ? ? B VAL 7 B DVA 8 1_555 ? ? ? ? ? ? ? 1.298 ? ? covale22 covale both ? B DVA 8 C ? ? ? 1_555 B TRP 9 N ? ? B DVA 8 B TRP 9 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale23 covale both ? B TRP 9 C ? ? ? 1_555 B DLE 10 N ? ? B TRP 9 B DLE 10 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale24 covale both ? B DLE 10 C ? ? ? 1_555 B TRP 11 N ? ? B DLE 10 B TRP 11 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale25 covale both ? B TRP 11 C ? ? ? 1_555 B DLE 12 N ? ? B TRP 11 B DLE 12 1_555 ? ? ? ? ? ? ? 1.308 ? ? covale26 covale both ? B DLE 12 C ? ? ? 1_555 B TRP 13 N ? ? B DLE 12 B TRP 13 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale27 covale both ? B TRP 13 C ? ? ? 1_555 B DLE 14 N ? ? B TRP 13 B DLE 14 1_555 ? ? ? ? ? ? ? 1.306 ? ? covale28 covale both ? B DLE 14 C ? ? ? 1_555 B TRP 15 N ? ? B DLE 14 B TRP 15 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale29 covale both ? B TRP 15 C ? ? ? 1_555 B ETA 16 N B ? B TRP 15 B ETA 16 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale30 covale both ? B TRP 15 C ? ? ? 1_555 B ETA 16 N A ? B TRP 15 B ETA 16 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale31 covale both ? C FVA 1 C ? ? ? 1_555 C GLY 2 N ? ? C FVA 1 C GLY 2 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale32 covale both ? C ALA 3 C ? ? ? 1_555 C DLE 4 N ? ? C ALA 3 C DLE 4 1_555 ? ? ? ? ? ? ? 1.297 ? ? covale33 covale both ? C DLE 4 C ? ? ? 1_555 C ALA 5 N ? ? C DLE 4 C ALA 5 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale34 covale both ? C ALA 5 C ? ? ? 1_555 C DVA 6 N ? ? C ALA 5 C DVA 6 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale35 covale both ? C DVA 6 C ? ? ? 1_555 C VAL 7 N ? ? C DVA 6 C VAL 7 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale36 covale both ? C VAL 7 C ? ? ? 1_555 C DVA 8 N ? ? C VAL 7 C DVA 8 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale37 covale both ? C DVA 8 C ? ? ? 1_555 C TRP 9 N ? ? C DVA 8 C TRP 9 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale38 covale both ? C TRP 9 C ? ? ? 1_555 C DLE 10 N ? ? C TRP 9 C DLE 10 1_555 ? ? ? ? ? ? ? 1.312 ? ? covale39 covale both ? C DLE 10 C ? ? ? 1_555 C TRP 11 N ? ? C DLE 10 C TRP 11 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale40 covale both ? C TRP 11 C ? ? ? 1_555 C DLE 12 N ? ? C TRP 11 C DLE 12 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale41 covale both ? C DLE 12 C ? ? ? 1_555 C TRP 13 N ? ? C DLE 12 C TRP 13 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale42 covale both ? C TRP 13 C ? ? ? 1_555 C DLE 14 N ? ? C TRP 13 C DLE 14 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale43 covale both ? C DLE 14 C ? ? ? 1_555 C TRP 15 N ? ? C DLE 14 C TRP 15 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale44 covale both ? C TRP 15 C ? ? ? 1_555 C ETA 16 N B ? C TRP 15 C ETA 16 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale45 covale both ? C TRP 15 C ? ? ? 1_555 C ETA 16 N A ? C TRP 15 C ETA 16 1_555 ? ? ? ? ? ? ? 1.365 ? ? covale46 covale both ? D FVA 1 C ? ? ? 1_555 D GLY 2 N ? ? D FVA 1 D GLY 2 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale47 covale both ? D ALA 3 C ? ? ? 1_555 D DLE 4 N ? ? D ALA 3 D DLE 4 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale48 covale both ? D DLE 4 C ? ? ? 1_555 D ALA 5 N ? ? D DLE 4 D ALA 5 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale49 covale both ? D ALA 5 C ? ? ? 1_555 D DVA 6 N ? ? D ALA 5 D DVA 6 1_555 ? ? ? ? ? ? ? 1.299 ? ? covale50 covale both ? D DVA 6 C ? ? ? 1_555 D VAL 7 N ? ? D DVA 6 D VAL 7 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale51 covale both ? D VAL 7 C ? ? ? 1_555 D DVA 8 N ? ? D VAL 7 D DVA 8 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale52 covale both ? D DVA 8 C ? ? ? 1_555 D TRP 9 N ? ? D DVA 8 D TRP 9 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale53 covale both ? D TRP 9 C ? ? ? 1_555 D DLE 10 N ? ? D TRP 9 D DLE 10 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale54 covale both ? D DLE 10 C ? ? ? 1_555 D TRP 11 N ? ? D DLE 10 D TRP 11 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale55 covale both ? D TRP 11 C ? ? ? 1_555 D DLE 12 N ? ? D TRP 11 D DLE 12 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale56 covale both ? D DLE 12 C ? ? ? 1_555 D TRP 13 N ? ? D DLE 12 D TRP 13 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale57 covale both ? D TRP 13 C ? ? ? 1_555 D DLE 14 N ? ? D TRP 13 D DLE 14 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale58 covale both ? D DLE 14 C ? ? ? 1_555 D TRP 15 N ? ? D DLE 14 D TRP 15 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale59 covale both ? D TRP 15 C ? ? ? 1_555 D ETA 16 N B ? D TRP 15 D ETA 16 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale60 covale both ? D TRP 15 C ? ? ? 1_555 D ETA 16 N A ? D TRP 15 D ETA 16 1_555 ? ? ? ? ? ? ? 1.388 ? ? covale61 covale both ? E FVA 1 C ? ? ? 1_555 E GLY 2 N ? ? E FVA 1 E GLY 2 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale62 covale both ? E ALA 3 C ? ? ? 1_555 E DLE 4 N ? ? E ALA 3 E DLE 4 1_555 ? ? ? ? ? ? ? 1.305 ? ? covale63 covale both ? E DLE 4 C ? ? ? 1_555 E ALA 5 N ? ? E DLE 4 E ALA 5 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale64 covale both ? E ALA 5 C ? ? ? 1_555 E DVA 6 N ? ? E ALA 5 E DVA 6 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale65 covale both ? E DVA 6 C ? ? ? 1_555 E VAL 7 N ? ? E DVA 6 E VAL 7 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale66 covale both ? E VAL 7 C ? ? ? 1_555 E DVA 8 N ? ? E VAL 7 E DVA 8 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale67 covale both ? E DVA 8 C ? ? ? 1_555 E TRP 9 N ? ? E DVA 8 E TRP 9 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale68 covale both ? E TRP 9 C ? ? ? 1_555 E DLE 10 N ? ? E TRP 9 E DLE 10 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale69 covale both ? E DLE 10 C ? ? ? 1_555 E TRP 11 N ? ? E DLE 10 E TRP 11 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale70 covale both ? E TRP 11 C ? ? ? 1_555 E DLE 12 N ? ? E TRP 11 E DLE 12 1_555 ? ? ? ? ? ? ? 1.309 ? ? covale71 covale both ? E DLE 12 C ? ? ? 1_555 E TRP 13 N ? ? E DLE 12 E TRP 13 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale72 covale both ? E TRP 13 C ? ? ? 1_555 E DLE 14 N ? ? E TRP 13 E DLE 14 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale73 covale both ? E DLE 14 C ? ? ? 1_555 E TRP 15 N ? ? E DLE 14 E TRP 15 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale74 covale both ? E TRP 15 C ? ? ? 1_555 E ETA 16 N ? ? E TRP 15 E ETA 16 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale75 covale both ? F FVA 1 C ? ? ? 1_555 F GLY 2 N ? ? F FVA 1 F GLY 2 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale76 covale both ? F ALA 3 C ? ? ? 1_555 F DLE 4 N ? ? F ALA 3 F DLE 4 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale77 covale both ? F DLE 4 C ? ? ? 1_555 F ALA 5 N ? ? F DLE 4 F ALA 5 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale78 covale both ? F ALA 5 C ? ? ? 1_555 F DVA 6 N ? ? F ALA 5 F DVA 6 1_555 ? ? ? ? ? ? ? 1.300 ? ? covale79 covale both ? F DVA 6 C ? ? ? 1_555 F VAL 7 N ? ? F DVA 6 F VAL 7 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale80 covale both ? F VAL 7 C ? ? ? 1_555 F DVA 8 N ? ? F VAL 7 F DVA 8 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale81 covale both ? F DVA 8 C ? ? ? 1_555 F TRP 9 N ? ? F DVA 8 F TRP 9 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale82 covale both ? F TRP 9 C ? ? ? 1_555 F DLE 10 N ? ? F TRP 9 F DLE 10 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale83 covale both ? F DLE 10 C ? ? ? 1_555 F TRP 11 N ? ? F DLE 10 F TRP 11 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale84 covale both ? F TRP 11 C ? ? ? 1_555 F DLE 12 N ? ? F TRP 11 F DLE 12 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale85 covale both ? F DLE 12 C ? ? ? 1_555 F TRP 13 N ? ? F DLE 12 F TRP 13 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale86 covale both ? F TRP 13 C ? ? ? 1_555 F DLE 14 N ? ? F TRP 13 F DLE 14 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale87 covale both ? F DLE 14 C ? ? ? 1_555 F TRP 15 N ? ? F DLE 14 F TRP 15 1_555 ? ? ? ? ? ? ? 1.309 ? ? covale88 covale both ? F TRP 15 C ? ? ? 1_555 F ETA 16 N B ? F TRP 15 F ETA 16 1_555 ? ? ? ? ? ? ? 1.379 ? ? covale89 covale both ? F TRP 15 C ? ? ? 1_555 F ETA 16 N A ? F TRP 15 F ETA 16 1_555 ? ? ? ? ? ? ? 1.339 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 FVA A 1 ? . . . . FVA A 1 ? 1_555 . . . . . . . VAL 1 FVA Formylation 'Named protein modification' 2 FVA B 1 ? . . . . FVA B 1 ? 1_555 . . . . . . . VAL 1 FVA Formylation 'Named protein modification' 3 FVA C 1 ? . . . . FVA C 1 ? 1_555 . . . . . . . VAL 1 FVA Formylation 'Named protein modification' 4 FVA D 1 ? . . . . FVA D 1 ? 1_555 . . . . . . . VAL 1 FVA Formylation 'Named protein modification' 5 FVA E 1 ? . . . . FVA E 1 ? 1_555 . . . . . . . VAL 1 FVA Formylation 'Named protein modification' 6 FVA F 1 ? . . . . FVA F 1 ? 1_555 . . . . . . . VAL 1 FVA Formylation 'Named protein modification' 7 ETA A 16 A . . . . ETA A 16 ? 1_555 . . . . . . . ? 1 ETA None 'Non-standard residue' 8 ETA A 16 B . . . . ETA A 16 ? 1_555 . . . . . . . ? 1 ETA None 'Non-standard residue' 9 ETA B 16 A . . . . ETA B 16 ? 1_555 . . . . . . . ? 1 ETA None 'Non-standard residue' 10 ETA B 16 B . . . . ETA B 16 ? 1_555 . . . . . . . ? 1 ETA None 'Non-standard residue' 11 ETA C 16 A . . . . ETA C 16 ? 1_555 . . . . . . . ? 1 ETA None 'Non-standard residue' 12 ETA C 16 B . . . . ETA C 16 ? 1_555 . . . . . . . ? 1 ETA None 'Non-standard residue' 13 ETA D 16 A . . . . ETA D 16 ? 1_555 . . . . . . . ? 1 ETA None 'Non-standard residue' 14 ETA D 16 B . . . . ETA D 16 ? 1_555 . . . . . . . ? 1 ETA None 'Non-standard residue' 15 ETA E 16 ? . . . . ETA E 16 ? 1_555 . . . . . . . ? 1 ETA None 'Non-standard residue' 16 ETA F 16 A . . . . ETA F 16 ? 1_555 . . . . . . . ? 1 ETA None 'Non-standard residue' 17 ETA F 16 B . . . . ETA F 16 ? 1_555 . . . . . . . ? 1 ETA None 'Non-standard residue' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? CA ? 2 ? EA ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel CA 1 2 ? anti-parallel EA 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLY A 2 ? DLE A 14 ? GLY A 2 DLE A 14 AA 2 GLY B 2 ? DLE B 14 ? GLY B 2 DLE B 14 CA 1 ALA C 3 ? DLE C 14 ? ALA C 3 DLE C 14 CA 2 GLY D 2 ? DLE D 14 ? GLY D 2 DLE D 14 EA 1 ALA E 3 ? DLE E 14 ? ALA E 3 DLE E 14 EA 2 GLY F 2 ? DLE F 14 ? GLY F 2 DLE F 14 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N TRP A 13 ? N TRP A 13 O ALA B 3 ? O ALA B 3 CA 1 2 N TRP C 13 ? N TRP C 13 O ALA D 3 ? O ALA D 3 EA 1 2 N TRP E 13 ? N TRP E 13 O ALA F 3 ? O ALA F 3 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 15P 1001 ? 14 'BINDING SITE FOR RESIDUE 15P A 1001' AC2 Software A 15P 1002 ? 7 'BINDING SITE FOR RESIDUE 15P A 1002' AC3 Software A 15P 1003 ? 3 'BINDING SITE FOR RESIDUE 15P A 1003' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 TRP A 9 ? TRP A 9 . ? 1_555 ? 2 AC1 14 DLE A 10 ? DLE A 10 . ? 1_555 ? 3 AC1 14 TRP A 11 ? TRP A 11 . ? 1_555 ? 4 AC1 14 TRP B 9 ? TRP B 9 . ? 1_555 ? 5 AC1 14 DLE B 10 ? DLE B 10 . ? 1_555 ? 6 AC1 14 TRP B 11 ? TRP B 11 . ? 1_555 ? 7 AC1 14 TRP C 9 ? TRP C 9 . ? 1_455 ? 8 AC1 14 TRP C 13 ? TRP C 13 . ? 1_555 ? 9 AC1 14 DLE D 10 ? DLE D 10 . ? 1_455 ? 10 AC1 14 TRP D 15 ? TRP D 15 . ? 1_455 ? 11 AC1 14 TRP E 9 ? TRP E 9 . ? 1_555 ? 12 AC1 14 TRP E 13 ? TRP E 13 . ? 1_556 ? 13 AC1 14 DLE F 10 ? DLE F 10 . ? 1_555 ? 14 AC1 14 TRP F 15 ? TRP F 15 . ? 1_555 ? 15 AC2 7 TRP A 15 ? TRP A 15 . ? 1_555 ? 16 AC2 7 ETA A 16 ? ETA A 16 . ? 1_555 ? 17 AC2 7 DLE B 4 ? DLE B 4 . ? 1_555 ? 18 AC2 7 DLE C 4 ? DLE C 4 . ? 1_455 ? 19 AC2 7 TRP D 15 ? TRP D 15 . ? 1_455 ? 20 AC2 7 ETA D 16 ? ETA D 16 . ? 1_455 ? 21 AC2 7 TRP E 15 ? TRP E 15 . ? 1_555 ? 22 AC3 3 FVA B 1 ? FVA B 1 . ? 1_555 ? 23 AC3 3 TRP D 15 ? TRP D 15 . ? 1_455 ? 24 AC3 3 ETA D 16 ? ETA D 16 . ? 1_455 ? # _pdbx_entry_details.entry_id 2Y5M _pdbx_entry_details.compound_details ;GRAMICIDIN IS A HETEROGENEOUS MIXTURE OF SEVERAL COMPOUNDS INCLUDING GRAMICIDIN A, B AND C WHICH ARE OBTAINED FROM BACILLUS BREVIS AND COLLECTIVELY CALLED GRAMICIDIN D HERE, GRAMICIDIN A IS REPRESENTED BY THE SEQUENCE (SEQRES) GROUP: 1 NAME: GRAMICIDIN A CHAIN: A, B, C, D, E. F COMPONENT_1: PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 16 DESCRIPTION: GRAMICIDIN A IS A HEXADECAMERIC HELICAL PEPTIDE WITH ALTERNATING D,L CHARACTERISTICS. THE N-TERM IS FORMYLATED (RESIDUE 1) WITH ETHANOLAMINE AT THE C-TERM (RESIDUE 16) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 F _pdbx_validate_rmsd_bond.auth_comp_id_1 DVA _pdbx_validate_rmsd_bond.auth_seq_id_1 8 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CG2 _pdbx_validate_rmsd_bond.auth_asym_id_2 F _pdbx_validate_rmsd_bond.auth_comp_id_2 DVA _pdbx_validate_rmsd_bond.auth_seq_id_2 8 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.366 _pdbx_validate_rmsd_bond.bond_target_value 1.524 _pdbx_validate_rmsd_bond.bond_deviation -0.158 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.021 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 TRP _pdbx_validate_rmsd_angle.auth_seq_id_1 15 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 ETA _pdbx_validate_rmsd_angle.auth_seq_id_2 16 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 A _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 ETA _pdbx_validate_rmsd_angle.auth_seq_id_3 16 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 A _pdbx_validate_rmsd_angle.angle_value 138.59 _pdbx_validate_rmsd_angle.angle_target_value 121.70 _pdbx_validate_rmsd_angle.angle_deviation 16.89 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 9 ? ? -160.06 109.59 2 1 TRP A 15 ? ? -163.89 77.04 3 1 TRP A 15 ? ? -163.89 103.98 4 1 TRP B 9 ? ? -160.48 110.51 5 1 TRP B 15 ? ? -163.00 80.99 6 1 TRP B 15 ? ? -163.00 102.03 7 1 TRP C 11 ? ? -160.57 96.95 8 1 TRP C 15 ? ? -163.10 77.53 9 1 TRP C 15 ? ? -163.10 86.80 10 1 TRP D 13 ? ? -152.23 86.01 11 1 ALA E 5 ? ? -160.18 94.47 12 1 TRP E 11 ? ? -160.53 95.95 13 1 TRP E 15 ? ? -163.01 80.25 14 1 TRP F 13 ? ? -150.87 84.77 # _pdbx_molecule_features.prd_id PRD_000150 _pdbx_molecule_features.name 'GRAMICIDIN A' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;GRAMICIDIN A IS A HEXADECAMERIC HELICAL PEPTIDE WITH ALTERNATING D,L CHARACTERISTICS. THE N-TERM IS FORMYLATED (RESIDUE 0). THE C-TERM IS CAPPED WITH ETHANOLAMINE (RESIDUE 16). ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000150 A 2 PRD_000150 B 3 PRD_000150 C 4 PRD_000150 D 5 PRD_000150 E 6 PRD_000150 F # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A FVA 1 A FVA 1 ? VAL N-FORMYL-L-VALINE 2 B FVA 1 B FVA 1 ? VAL N-FORMYL-L-VALINE 3 C FVA 1 C FVA 1 ? VAL N-FORMYL-L-VALINE 4 D FVA 1 D FVA 1 ? VAL N-FORMYL-L-VALINE 5 E FVA 1 E FVA 1 ? VAL N-FORMYL-L-VALINE 6 F FVA 1 F FVA 1 ? VAL N-FORMYL-L-VALINE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 15P OXT O N N 1 15P C1 C N N 2 15P C2 C N N 3 15P O1 O N N 4 15P C3 C N N 5 15P C4 C N N 6 15P O2 O N N 7 15P C5 C N N 8 15P C6 C N N 9 15P O3 O N N 10 15P C7 C N N 11 15P C8 C N N 12 15P O4 O N N 13 15P C9 C N N 14 15P C10 C N N 15 15P O5 O N N 16 15P C11 C N N 17 15P C12 C N N 18 15P O6 O N N 19 15P C13 C N N 20 15P C14 C N N 21 15P O7 O N N 22 15P C15 C N N 23 15P C16 C N N 24 15P O8 O N N 25 15P C17 C N N 26 15P C18 C N N 27 15P O9 O N N 28 15P C19 C N N 29 15P C20 C N N 30 15P O10 O N N 31 15P C21 C N N 32 15P C22 C N N 33 15P O11 O N N 34 15P C23 C N N 35 15P C24 C N N 36 15P O12 O N N 37 15P C25 C N N 38 15P C26 C N N 39 15P O13 O N N 40 15P C27 C N N 41 15P C28 C N N 42 15P O14 O N N 43 15P C29 C N N 44 15P C30 C N N 45 15P O15 O N N 46 15P C31 C N N 47 15P C32 C N N 48 15P O16 O N N 49 15P C33 C N N 50 15P C34 C N N 51 15P O17 O N N 52 15P C35 C N N 53 15P C36 C N N 54 15P O18 O N N 55 15P C37 C N N 56 15P C38 C N N 57 15P O19 O N N 58 15P C39 C N N 59 15P C40 C N N 60 15P O20 O N N 61 15P C41 C N N 62 15P C42 C N N 63 15P O21 O N N 64 15P C43 C N N 65 15P C44 C N N 66 15P O22 O N N 67 15P C45 C N N 68 15P C46 C N N 69 15P O23 O N N 70 15P C47 C N N 71 15P C48 C N N 72 15P O24 O N N 73 15P C49 C N N 74 15P C50 C N N 75 15P O25 O N N 76 15P C51 C N N 77 15P C52 C N N 78 15P O26 O N N 79 15P C53 C N N 80 15P C54 C N N 81 15P O27 O N N 82 15P C55 C N N 83 15P C56 C N N 84 15P O28 O N N 85 15P C57 C N N 86 15P C58 C N N 87 15P O29 O N N 88 15P C59 C N N 89 15P C60 C N N 90 15P O30 O N N 91 15P C61 C N N 92 15P C62 C N N 93 15P O31 O N N 94 15P C63 C N N 95 15P C64 C N N 96 15P O32 O N N 97 15P C65 C N N 98 15P C66 C N N 99 15P O33 O N N 100 15P C67 C N N 101 15P C68 C N N 102 15P O34 O N N 103 15P CM C N N 104 15P HXT H N N 105 15P H11 H N N 106 15P H21 H N N 107 15P H12 H N N 108 15P H22 H N N 109 15P H13 H N N 110 15P H23 H N N 111 15P H14 H N N 112 15P H24 H N N 113 15P H15 H N N 114 15P H25 H N N 115 15P H16 H N N 116 15P H26 H N N 117 15P H17 H N N 118 15P H27 H N N 119 15P H18 H N N 120 15P H28 H N N 121 15P H19 H N N 122 15P H29 H N N 123 15P H101 H N N 124 15P H102 H N N 125 15P H111 H N N 126 15P H112 H N N 127 15P H121 H N N 128 15P H122 H N N 129 15P H131 H N N 130 15P H132 H N N 131 15P H141 H N N 132 15P H142 H N N 133 15P H151 H N N 134 15P H152 H N N 135 15P H161 H N N 136 15P H162 H N N 137 15P H171 H N N 138 15P H172 H N N 139 15P H181 H N N 140 15P H182 H N N 141 15P H191 H N N 142 15P H192 H N N 143 15P H201 H N N 144 15P H202 H N N 145 15P H211 H N N 146 15P H212 H N N 147 15P H221 H N N 148 15P H222 H N N 149 15P H231 H N N 150 15P H232 H N N 151 15P H241 H N N 152 15P H242 H N N 153 15P H251 H N N 154 15P H252 H N N 155 15P H261 H N N 156 15P H262 H N N 157 15P H271 H N N 158 15P H272 H N N 159 15P H281 H N N 160 15P H282 H N N 161 15P H291 H N N 162 15P H292 H N N 163 15P H301 H N N 164 15P H302 H N N 165 15P H311 H N N 166 15P H312 H N N 167 15P H321 H N N 168 15P H322 H N N 169 15P H331 H N N 170 15P H332 H N N 171 15P H341 H N N 172 15P H342 H N N 173 15P H351 H N N 174 15P H352 H N N 175 15P H361 H N N 176 15P H362 H N N 177 15P H371 H N N 178 15P H372 H N N 179 15P H381 H N N 180 15P H382 H N N 181 15P H391 H N N 182 15P H392 H N N 183 15P H401 H N N 184 15P H402 H N N 185 15P H411 H N N 186 15P H412 H N N 187 15P H421 H N N 188 15P H422 H N N 189 15P H431 H N N 190 15P H432 H N N 191 15P H441 H N N 192 15P H442 H N N 193 15P H451 H N N 194 15P H452 H N N 195 15P H461 H N N 196 15P H462 H N N 197 15P H471 H N N 198 15P H472 H N N 199 15P H481 H N N 200 15P H482 H N N 201 15P H491 H N N 202 15P H492 H N N 203 15P H501 H N N 204 15P H502 H N N 205 15P H511 H N N 206 15P H512 H N N 207 15P H521 H N N 208 15P H522 H N N 209 15P H531 H N N 210 15P H532 H N N 211 15P H541 H N N 212 15P H542 H N N 213 15P H551 H N N 214 15P H552 H N N 215 15P H561 H N N 216 15P H562 H N N 217 15P H571 H N N 218 15P H572 H N N 219 15P H581 H N N 220 15P H582 H N N 221 15P H591 H N N 222 15P H592 H N N 223 15P H601 H N N 224 15P H602 H N N 225 15P H611 H N N 226 15P H612 H N N 227 15P H621 H N N 228 15P H622 H N N 229 15P H631 H N N 230 15P H632 H N N 231 15P H641 H N N 232 15P H642 H N N 233 15P H651 H N N 234 15P H652 H N N 235 15P H661 H N N 236 15P H662 H N N 237 15P H671 H N N 238 15P H672 H N N 239 15P H681 H N N 240 15P H682 H N N 241 15P HCM1 H N N 242 15P HCM2 H N N 243 15P HCM3 H N N 244 ALA N N N N 245 ALA CA C N S 246 ALA C C N N 247 ALA O O N N 248 ALA CB C N N 249 ALA OXT O N N 250 ALA H H N N 251 ALA H2 H N N 252 ALA HA H N N 253 ALA HB1 H N N 254 ALA HB2 H N N 255 ALA HB3 H N N 256 ALA HXT H N N 257 DLE N N N N 258 DLE CA C N R 259 DLE CB C N N 260 DLE CG C N N 261 DLE CD1 C N N 262 DLE CD2 C N N 263 DLE C C N N 264 DLE O O N N 265 DLE OXT O N N 266 DLE H H N N 267 DLE H2 H N N 268 DLE HA H N N 269 DLE HB2 H N N 270 DLE HB3 H N N 271 DLE HG H N N 272 DLE HD11 H N N 273 DLE HD12 H N N 274 DLE HD13 H N N 275 DLE HD21 H N N 276 DLE HD22 H N N 277 DLE HD23 H N N 278 DLE HXT H N N 279 DVA N N N N 280 DVA CA C N R 281 DVA CB C N N 282 DVA CG1 C N N 283 DVA CG2 C N N 284 DVA C C N N 285 DVA O O N N 286 DVA OXT O N N 287 DVA H H N N 288 DVA H2 H N N 289 DVA HA H N N 290 DVA HB H N N 291 DVA HG11 H N N 292 DVA HG12 H N N 293 DVA HG13 H N N 294 DVA HG21 H N N 295 DVA HG22 H N N 296 DVA HG23 H N N 297 DVA HXT H N N 298 ETA CA C N N 299 ETA N N N N 300 ETA C C N N 301 ETA O O N N 302 ETA HA1 H N N 303 ETA HA2 H N N 304 ETA H H N N 305 ETA H2 H N N 306 ETA HB1 H N N 307 ETA HB2 H N N 308 ETA HO H N N 309 FVA C C N N 310 FVA N N N N 311 FVA O O N N 312 FVA CA C N S 313 FVA CB C N N 314 FVA CG1 C N N 315 FVA CG2 C N N 316 FVA H H N N 317 FVA HA H N N 318 FVA HB H N N 319 FVA HG11 H N N 320 FVA HG12 H N N 321 FVA HG13 H N N 322 FVA HG21 H N N 323 FVA HG22 H N N 324 FVA HG23 H N N 325 FVA O1 O N N 326 FVA CN C N N 327 FVA HN H N N 328 FVA OXT O N N 329 FVA HXT H N N 330 GLY N N N N 331 GLY CA C N N 332 GLY C C N N 333 GLY O O N N 334 GLY OXT O N N 335 GLY H H N N 336 GLY H2 H N N 337 GLY HA2 H N N 338 GLY HA3 H N N 339 GLY HXT H N N 340 HOH O O N N 341 HOH H1 H N N 342 HOH H2 H N N 343 TRP N N N N 344 TRP CA C N S 345 TRP C C N N 346 TRP O O N N 347 TRP CB C N N 348 TRP CG C Y N 349 TRP CD1 C Y N 350 TRP CD2 C Y N 351 TRP NE1 N Y N 352 TRP CE2 C Y N 353 TRP CE3 C Y N 354 TRP CZ2 C Y N 355 TRP CZ3 C Y N 356 TRP CH2 C Y N 357 TRP OXT O N N 358 TRP H H N N 359 TRP H2 H N N 360 TRP HA H N N 361 TRP HB2 H N N 362 TRP HB3 H N N 363 TRP HD1 H N N 364 TRP HE1 H N N 365 TRP HE3 H N N 366 TRP HZ2 H N N 367 TRP HZ3 H N N 368 TRP HH2 H N N 369 TRP HXT H N N 370 VAL N N N N 371 VAL CA C N S 372 VAL C C N N 373 VAL O O N N 374 VAL CB C N N 375 VAL CG1 C N N 376 VAL CG2 C N N 377 VAL OXT O N N 378 VAL H H N N 379 VAL H2 H N N 380 VAL HA H N N 381 VAL HB H N N 382 VAL HG11 H N N 383 VAL HG12 H N N 384 VAL HG13 H N N 385 VAL HG21 H N N 386 VAL HG22 H N N 387 VAL HG23 H N N 388 VAL HXT H N N 389 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 15P OXT C1 sing N N 1 15P OXT HXT sing N N 2 15P C1 C2 sing N N 3 15P C1 H11 sing N N 4 15P C1 H21 sing N N 5 15P C2 O1 sing N N 6 15P C2 H12 sing N N 7 15P C2 H22 sing N N 8 15P O1 C3 sing N N 9 15P C3 C4 sing N N 10 15P C3 H13 sing N N 11 15P C3 H23 sing N N 12 15P C4 O2 sing N N 13 15P C4 H14 sing N N 14 15P C4 H24 sing N N 15 15P O2 C5 sing N N 16 15P C5 C6 sing N N 17 15P C5 H15 sing N N 18 15P C5 H25 sing N N 19 15P C6 O3 sing N N 20 15P C6 H16 sing N N 21 15P C6 H26 sing N N 22 15P O3 C7 sing N N 23 15P C7 C8 sing N N 24 15P C7 H17 sing N N 25 15P C7 H27 sing N N 26 15P C8 O4 sing N N 27 15P C8 H18 sing N N 28 15P C8 H28 sing N N 29 15P O4 C9 sing N N 30 15P C9 C10 sing N N 31 15P C9 H19 sing N N 32 15P C9 H29 sing N N 33 15P C10 O5 sing N N 34 15P C10 H101 sing N N 35 15P C10 H102 sing N N 36 15P O5 C11 sing N N 37 15P C11 C12 sing N N 38 15P C11 H111 sing N N 39 15P C11 H112 sing N N 40 15P C12 O6 sing N N 41 15P C12 H121 sing N N 42 15P C12 H122 sing N N 43 15P O6 C13 sing N N 44 15P C13 C14 sing N N 45 15P C13 H131 sing N N 46 15P C13 H132 sing N N 47 15P C14 O7 sing N N 48 15P C14 H141 sing N N 49 15P C14 H142 sing N N 50 15P O7 C15 sing N N 51 15P C15 C16 sing N N 52 15P C15 H151 sing N N 53 15P C15 H152 sing N N 54 15P C16 O8 sing N N 55 15P C16 H161 sing N N 56 15P C16 H162 sing N N 57 15P O8 C17 sing N N 58 15P C17 C18 sing N N 59 15P C17 H171 sing N N 60 15P C17 H172 sing N N 61 15P C18 O9 sing N N 62 15P C18 H181 sing N N 63 15P C18 H182 sing N N 64 15P O9 C19 sing N N 65 15P C19 C20 sing N N 66 15P C19 H191 sing N N 67 15P C19 H192 sing N N 68 15P C20 O10 sing N N 69 15P C20 H201 sing N N 70 15P C20 H202 sing N N 71 15P O10 C21 sing N N 72 15P C21 C22 sing N N 73 15P C21 H211 sing N N 74 15P C21 H212 sing N N 75 15P C22 O11 sing N N 76 15P C22 H221 sing N N 77 15P C22 H222 sing N N 78 15P O11 C23 sing N N 79 15P C23 C24 sing N N 80 15P C23 H231 sing N N 81 15P C23 H232 sing N N 82 15P C24 O12 sing N N 83 15P C24 H241 sing N N 84 15P C24 H242 sing N N 85 15P O12 C25 sing N N 86 15P C25 C26 sing N N 87 15P C25 H251 sing N N 88 15P C25 H252 sing N N 89 15P C26 O13 sing N N 90 15P C26 H261 sing N N 91 15P C26 H262 sing N N 92 15P O13 C27 sing N N 93 15P C27 C28 sing N N 94 15P C27 H271 sing N N 95 15P C27 H272 sing N N 96 15P C28 O14 sing N N 97 15P C28 H281 sing N N 98 15P C28 H282 sing N N 99 15P O14 C29 sing N N 100 15P C29 C30 sing N N 101 15P C29 H291 sing N N 102 15P C29 H292 sing N N 103 15P C30 O15 sing N N 104 15P C30 H301 sing N N 105 15P C30 H302 sing N N 106 15P O15 C31 sing N N 107 15P C31 C32 sing N N 108 15P C31 H311 sing N N 109 15P C31 H312 sing N N 110 15P C32 O16 sing N N 111 15P C32 H321 sing N N 112 15P C32 H322 sing N N 113 15P O16 C33 sing N N 114 15P C33 C34 sing N N 115 15P C33 H331 sing N N 116 15P C33 H332 sing N N 117 15P C34 O17 sing N N 118 15P C34 H341 sing N N 119 15P C34 H342 sing N N 120 15P O17 C35 sing N N 121 15P C35 C36 sing N N 122 15P C35 H351 sing N N 123 15P C35 H352 sing N N 124 15P C36 O18 sing N N 125 15P C36 H361 sing N N 126 15P C36 H362 sing N N 127 15P O18 C37 sing N N 128 15P C37 C38 sing N N 129 15P C37 H371 sing N N 130 15P C37 H372 sing N N 131 15P C38 O19 sing N N 132 15P C38 H381 sing N N 133 15P C38 H382 sing N N 134 15P O19 C39 sing N N 135 15P C39 C40 sing N N 136 15P C39 H391 sing N N 137 15P C39 H392 sing N N 138 15P C40 O20 sing N N 139 15P C40 H401 sing N N 140 15P C40 H402 sing N N 141 15P O20 C41 sing N N 142 15P C41 C42 sing N N 143 15P C41 H411 sing N N 144 15P C41 H412 sing N N 145 15P C42 O21 sing N N 146 15P C42 H421 sing N N 147 15P C42 H422 sing N N 148 15P O21 C43 sing N N 149 15P C43 C44 sing N N 150 15P C43 H431 sing N N 151 15P C43 H432 sing N N 152 15P C44 O22 sing N N 153 15P C44 H441 sing N N 154 15P C44 H442 sing N N 155 15P O22 C45 sing N N 156 15P C45 C46 sing N N 157 15P C45 H451 sing N N 158 15P C45 H452 sing N N 159 15P C46 O23 sing N N 160 15P C46 H461 sing N N 161 15P C46 H462 sing N N 162 15P O23 C47 sing N N 163 15P C47 C48 sing N N 164 15P C47 H471 sing N N 165 15P C47 H472 sing N N 166 15P C48 O24 sing N N 167 15P C48 H481 sing N N 168 15P C48 H482 sing N N 169 15P O24 C49 sing N N 170 15P C49 C50 sing N N 171 15P C49 H491 sing N N 172 15P C49 H492 sing N N 173 15P C50 O25 sing N N 174 15P C50 H501 sing N N 175 15P C50 H502 sing N N 176 15P O25 C51 sing N N 177 15P C51 C52 sing N N 178 15P C51 H511 sing N N 179 15P C51 H512 sing N N 180 15P C52 O26 sing N N 181 15P C52 H521 sing N N 182 15P C52 H522 sing N N 183 15P O26 C53 sing N N 184 15P C53 C54 sing N N 185 15P C53 H531 sing N N 186 15P C53 H532 sing N N 187 15P C54 O27 sing N N 188 15P C54 H541 sing N N 189 15P C54 H542 sing N N 190 15P O27 C55 sing N N 191 15P C55 C56 sing N N 192 15P C55 H551 sing N N 193 15P C55 H552 sing N N 194 15P C56 O28 sing N N 195 15P C56 H561 sing N N 196 15P C56 H562 sing N N 197 15P O28 C57 sing N N 198 15P C57 C58 sing N N 199 15P C57 H571 sing N N 200 15P C57 H572 sing N N 201 15P C58 O29 sing N N 202 15P C58 H581 sing N N 203 15P C58 H582 sing N N 204 15P O29 C59 sing N N 205 15P C59 C60 sing N N 206 15P C59 H591 sing N N 207 15P C59 H592 sing N N 208 15P C60 O30 sing N N 209 15P C60 H601 sing N N 210 15P C60 H602 sing N N 211 15P O30 C61 sing N N 212 15P C61 C62 sing N N 213 15P C61 H611 sing N N 214 15P C61 H612 sing N N 215 15P C62 O31 sing N N 216 15P C62 H621 sing N N 217 15P C62 H622 sing N N 218 15P O31 C63 sing N N 219 15P C63 C64 sing N N 220 15P C63 H631 sing N N 221 15P C63 H632 sing N N 222 15P C64 O32 sing N N 223 15P C64 H641 sing N N 224 15P C64 H642 sing N N 225 15P O32 C65 sing N N 226 15P C65 C66 sing N N 227 15P C65 H651 sing N N 228 15P C65 H652 sing N N 229 15P C66 O33 sing N N 230 15P C66 H661 sing N N 231 15P C66 H662 sing N N 232 15P O33 C67 sing N N 233 15P C67 C68 sing N N 234 15P C67 H671 sing N N 235 15P C67 H672 sing N N 236 15P C68 O34 sing N N 237 15P C68 H681 sing N N 238 15P C68 H682 sing N N 239 15P O34 CM sing N N 240 15P CM HCM1 sing N N 241 15P CM HCM2 sing N N 242 15P CM HCM3 sing N N 243 ALA N CA sing N N 244 ALA N H sing N N 245 ALA N H2 sing N N 246 ALA CA C sing N N 247 ALA CA CB sing N N 248 ALA CA HA sing N N 249 ALA C O doub N N 250 ALA C OXT sing N N 251 ALA CB HB1 sing N N 252 ALA CB HB2 sing N N 253 ALA CB HB3 sing N N 254 ALA OXT HXT sing N N 255 DLE N CA sing N N 256 DLE N H sing N N 257 DLE N H2 sing N N 258 DLE CA CB sing N N 259 DLE CA C sing N N 260 DLE CA HA sing N N 261 DLE CB CG sing N N 262 DLE CB HB2 sing N N 263 DLE CB HB3 sing N N 264 DLE CG CD1 sing N N 265 DLE CG CD2 sing N N 266 DLE CG HG sing N N 267 DLE CD1 HD11 sing N N 268 DLE CD1 HD12 sing N N 269 DLE CD1 HD13 sing N N 270 DLE CD2 HD21 sing N N 271 DLE CD2 HD22 sing N N 272 DLE CD2 HD23 sing N N 273 DLE C O doub N N 274 DLE C OXT sing N N 275 DLE OXT HXT sing N N 276 DVA N CA sing N N 277 DVA N H sing N N 278 DVA N H2 sing N N 279 DVA CA CB sing N N 280 DVA CA C sing N N 281 DVA CA HA sing N N 282 DVA CB CG1 sing N N 283 DVA CB CG2 sing N N 284 DVA CB HB sing N N 285 DVA CG1 HG11 sing N N 286 DVA CG1 HG12 sing N N 287 DVA CG1 HG13 sing N N 288 DVA CG2 HG21 sing N N 289 DVA CG2 HG22 sing N N 290 DVA CG2 HG23 sing N N 291 DVA C O doub N N 292 DVA C OXT sing N N 293 DVA OXT HXT sing N N 294 ETA CA N sing N N 295 ETA CA C sing N N 296 ETA CA HA1 sing N N 297 ETA CA HA2 sing N N 298 ETA N H sing N N 299 ETA N H2 sing N N 300 ETA C O sing N N 301 ETA C HB1 sing N N 302 ETA C HB2 sing N N 303 ETA O HO sing N N 304 FVA O C doub N N 305 FVA C CA sing N N 306 FVA H N sing N N 307 FVA N CN sing N N 308 FVA N CA sing N N 309 FVA CB CA sing N N 310 FVA CA HA sing N N 311 FVA HB CB sing N N 312 FVA CB CG2 sing N N 313 FVA CB CG1 sing N N 314 FVA HG13 CG1 sing N N 315 FVA HG12 CG1 sing N N 316 FVA CG1 HG11 sing N N 317 FVA HG22 CG2 sing N N 318 FVA HG23 CG2 sing N N 319 FVA CG2 HG21 sing N N 320 FVA CN O1 doub N N 321 FVA HN CN sing N N 322 FVA C OXT sing N N 323 FVA OXT HXT sing N N 324 GLY N CA sing N N 325 GLY N H sing N N 326 GLY N H2 sing N N 327 GLY CA C sing N N 328 GLY CA HA2 sing N N 329 GLY CA HA3 sing N N 330 GLY C O doub N N 331 GLY C OXT sing N N 332 GLY OXT HXT sing N N 333 HOH O H1 sing N N 334 HOH O H2 sing N N 335 TRP N CA sing N N 336 TRP N H sing N N 337 TRP N H2 sing N N 338 TRP CA C sing N N 339 TRP CA CB sing N N 340 TRP CA HA sing N N 341 TRP C O doub N N 342 TRP C OXT sing N N 343 TRP CB CG sing N N 344 TRP CB HB2 sing N N 345 TRP CB HB3 sing N N 346 TRP CG CD1 doub Y N 347 TRP CG CD2 sing Y N 348 TRP CD1 NE1 sing Y N 349 TRP CD1 HD1 sing N N 350 TRP CD2 CE2 doub Y N 351 TRP CD2 CE3 sing Y N 352 TRP NE1 CE2 sing Y N 353 TRP NE1 HE1 sing N N 354 TRP CE2 CZ2 sing Y N 355 TRP CE3 CZ3 doub Y N 356 TRP CE3 HE3 sing N N 357 TRP CZ2 CH2 doub Y N 358 TRP CZ2 HZ2 sing N N 359 TRP CZ3 CH2 sing Y N 360 TRP CZ3 HZ3 sing N N 361 TRP CH2 HH2 sing N N 362 TRP OXT HXT sing N N 363 VAL N CA sing N N 364 VAL N H sing N N 365 VAL N H2 sing N N 366 VAL CA C sing N N 367 VAL CA CB sing N N 368 VAL CA HA sing N N 369 VAL C O doub N N 370 VAL C OXT sing N N 371 VAL CB CG1 sing N N 372 VAL CB CG2 sing N N 373 VAL CB HB sing N N 374 VAL CG1 HG11 sing N N 375 VAL CG1 HG12 sing N N 376 VAL CG1 HG13 sing N N 377 VAL CG2 HG21 sing N N 378 VAL CG2 HG22 sing N N 379 VAL CG2 HG23 sing N N 380 VAL OXT HXT sing N N 381 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1AL4 _pdbx_initial_refinement_model.details 'PDB ENTRY 1AL4' # _atom_sites.entry_id 2Y5M _atom_sites.fract_transf_matrix[1][1] 0.032638 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005767 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015925 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.033117 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_