HEADER PROTEIN BINDING 17-JAN-11 2Y5Q TITLE LISTERIA MONOCYTOGENES INLB (INTERNALIN B) RESIDUES 36-392 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERNALIN B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: INTERNALIN DOMAIN AND B-REPEAT, RESIDUES 36-392; COMPND 5 SYNONYM: INLB; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE B-REPEAT (RESIDUES 322-392) IS NOT VISIBLE IN THE COMPND 8 ELECTRON DENSITY. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 STRAIN: EGD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX-6P-1 KEYWDS PROTEIN BINDING, LEUCINE RICH REPEAT, VIRULENCE FACTOR, PATHOGENICITY KEYWDS 2 FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR M.EBBES,H.H.NIEMANN REVDAT 5 20-DEC-23 2Y5Q 1 REMARK LINK REVDAT 4 24-JUL-19 2Y5Q 1 REMARK REVDAT 3 08-MAY-19 2Y5Q 1 REMARK REVDAT 2 01-JUN-11 2Y5Q 1 JRNL REVDAT 1 23-FEB-11 2Y5Q 0 JRNL AUTH M.EBBES,W.M.BLEYMULLER,M.CERNESCU,R.NOLKER,B.BRUTSCHY, JRNL AUTH 2 H.H.NIEMANN JRNL TITL FOLD AND FUNCTION OF THE INLB B-REPEAT. JRNL REF J.BIOL.CHEM. V. 286 15496 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21345802 JRNL DOI 10.1074/JBC.M110.189951 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 829 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1105 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2271 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 86.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.69000 REMARK 3 B22 (A**2) : 4.69000 REMARK 3 B33 (A**2) : -7.04000 REMARK 3 B12 (A**2) : 2.35000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.375 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.278 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.220 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.176 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2307 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1535 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3131 ; 2.037 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3827 ; 1.134 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 288 ; 8.955 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;46.273 ;26.970 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 437 ;19.934 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;10.471 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 379 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2500 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 378 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1444 ; 0.631 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 577 ; 0.101 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2358 ; 1.242 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 863 ; 1.973 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 773 ; 3.514 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 80.7375 -30.6236 29.2733 REMARK 3 T TENSOR REMARK 3 T11: 0.7498 T22: 0.5167 REMARK 3 T33: 0.7324 T12: -0.1100 REMARK 3 T13: -0.1444 T23: -0.0872 REMARK 3 L TENSOR REMARK 3 L11: 15.7093 L22: 4.9930 REMARK 3 L33: 7.1627 L12: -6.7216 REMARK 3 L13: 0.2040 L23: 3.7881 REMARK 3 S TENSOR REMARK 3 S11: 0.2840 S12: -0.8538 S13: 0.5612 REMARK 3 S21: 0.7748 S22: 0.9477 S23: -1.0430 REMARK 3 S31: 1.4846 S32: 0.9749 S33: -1.2317 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): 57.6838 -35.8073 37.0795 REMARK 3 T TENSOR REMARK 3 T11: 0.0351 T22: 0.0242 REMARK 3 T33: 0.0725 T12: 0.0131 REMARK 3 T13: -0.0144 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 5.3310 L22: 1.3523 REMARK 3 L33: 4.0450 L12: 0.7004 REMARK 3 L13: -2.6283 L23: -0.2481 REMARK 3 S TENSOR REMARK 3 S11: 0.1502 S12: -0.1397 S13: 0.3124 REMARK 3 S21: -0.0440 S22: -0.0551 S23: -0.1073 REMARK 3 S31: -0.1414 S32: 0.1846 S33: -0.0951 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 228 A 275 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5862 -48.9307 47.9399 REMARK 3 T TENSOR REMARK 3 T11: 0.2261 T22: 0.4003 REMARK 3 T33: 0.2664 T12: -0.1056 REMARK 3 T13: -0.0234 T23: -0.0673 REMARK 3 L TENSOR REMARK 3 L11: 4.6855 L22: 4.7289 REMARK 3 L33: 2.4502 L12: 3.3631 REMARK 3 L13: -1.3914 L23: -1.2494 REMARK 3 S TENSOR REMARK 3 S11: 0.2030 S12: -0.5002 S13: -0.3636 REMARK 3 S21: 0.5970 S22: -0.1871 S23: 0.0419 REMARK 3 S31: 0.2604 S32: -0.4135 S33: -0.0158 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 276 A 321 REMARK 3 ORIGIN FOR THE GROUP (A): 25.3145 -52.8476 45.6577 REMARK 3 T TENSOR REMARK 3 T11: 0.2232 T22: 0.4439 REMARK 3 T33: 0.2750 T12: -0.1343 REMARK 3 T13: -0.1019 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 5.6309 L22: 13.9003 REMARK 3 L33: 3.3672 L12: 3.4922 REMARK 3 L13: -1.1577 L23: -3.5822 REMARK 3 S TENSOR REMARK 3 S11: 0.1921 S12: -0.6695 S13: -0.5259 REMARK 3 S21: -0.1709 S22: -0.1780 S23: 0.0889 REMARK 3 S31: 0.5668 S32: -0.5476 S33: -0.0141 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 2Y5Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1290045760. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16581 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 14.70 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1H6T REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 DEG C IN HANGING OR SITTING-DROPS REMARK 280 WITH 1.5 UL PROTEIN (5 MG/ML) PLUS 1.5 UL RESERVOIR (0.1 M MES, REMARK 280 PH 5.5, 14 % MPD) MICROSEEDED FROM A SIMILAR CONDITION (0.1 M REMARK 280 MES PH 6.0, 6.5 % PEG6000 AND 5 MM ZNCL2)., VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.90667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.95333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.95333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.90667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -200.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 71.90667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 31 REMARK 465 PRO A 32 REMARK 465 VAL A 322 REMARK 465 TYR A 323 REMARK 465 THR A 324 REMARK 465 VAL A 325 REMARK 465 SER A 326 REMARK 465 TYR A 327 REMARK 465 ASP A 328 REMARK 465 VAL A 329 REMARK 465 ASP A 330 REMARK 465 GLY A 331 REMARK 465 THR A 332 REMARK 465 VAL A 333 REMARK 465 ILE A 334 REMARK 465 LYS A 335 REMARK 465 THR A 336 REMARK 465 LYS A 337 REMARK 465 VAL A 338 REMARK 465 GLU A 339 REMARK 465 ALA A 340 REMARK 465 GLY A 341 REMARK 465 THR A 342 REMARK 465 ARG A 343 REMARK 465 ILE A 344 REMARK 465 THR A 345 REMARK 465 ALA A 346 REMARK 465 PRO A 347 REMARK 465 LYS A 348 REMARK 465 PRO A 349 REMARK 465 PRO A 350 REMARK 465 THR A 351 REMARK 465 LYS A 352 REMARK 465 GLN A 353 REMARK 465 GLY A 354 REMARK 465 TYR A 355 REMARK 465 VAL A 356 REMARK 465 PHE A 357 REMARK 465 LYS A 358 REMARK 465 GLY A 359 REMARK 465 TRP A 360 REMARK 465 TYR A 361 REMARK 465 THR A 362 REMARK 465 GLU A 363 REMARK 465 LYS A 364 REMARK 465 ASN A 365 REMARK 465 GLY A 366 REMARK 465 GLY A 367 REMARK 465 HIS A 368 REMARK 465 GLU A 369 REMARK 465 TRP A 370 REMARK 465 ASN A 371 REMARK 465 PHE A 372 REMARK 465 ASN A 373 REMARK 465 THR A 374 REMARK 465 ASP A 375 REMARK 465 TYR A 376 REMARK 465 MET A 377 REMARK 465 SER A 378 REMARK 465 GLY A 379 REMARK 465 ASN A 380 REMARK 465 ASP A 381 REMARK 465 PHE A 382 REMARK 465 THR A 383 REMARK 465 LEU A 384 REMARK 465 TYR A 385 REMARK 465 ALA A 386 REMARK 465 VAL A 387 REMARK 465 PHE A 388 REMARK 465 LYS A 389 REMARK 465 ALA A 390 REMARK 465 GLU A 391 REMARK 465 THR A 392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 194 CG GLU A 194 CD 0.097 REMARK 500 TRP A 285 CB TRP A 285 CG 0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 87 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 PRO A 115 C - N - CA ANGL. DEV. = -9.7 DEGREES REMARK 500 PRO A 288 C - N - CD ANGL. DEV. = -18.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 62 37.87 38.85 REMARK 500 ASN A 85 54.41 39.22 REMARK 500 ASN A 108 -164.80 -109.40 REMARK 500 THR A 111 -51.38 -124.90 REMARK 500 LEU A 119 68.48 -100.18 REMARK 500 LYS A 120 -31.13 -37.82 REMARK 500 ASN A 130 -153.61 -108.44 REMARK 500 HIS A 151 45.38 70.31 REMARK 500 ASN A 173 44.00 75.08 REMARK 500 ASN A 174 -157.19 -125.84 REMARK 500 ASP A 195 69.04 60.03 REMARK 500 ASN A 196 -130.66 -129.34 REMARK 500 GLN A 197 51.84 -157.33 REMARK 500 ASN A 218 -161.41 -128.41 REMARK 500 ILE A 247 -143.23 -125.52 REMARK 500 HIS A 249 66.45 -66.24 REMARK 500 THR A 262 -53.70 -24.25 REMARK 500 ILE A 271 139.35 152.21 REMARK 500 ASP A 274 86.09 55.95 REMARK 500 ASP A 275 62.43 -3.25 REMARK 500 LYS A 280 126.07 -38.26 REMARK 500 PRO A 281 54.78 -119.87 REMARK 500 LEU A 287 -107.11 -132.21 REMARK 500 PRO A 288 -104.53 48.03 REMARK 500 PHE A 290 -88.24 -128.94 REMARK 500 THR A 291 -157.86 -153.19 REMARK 500 GLN A 300 108.05 -169.30 REMARK 500 GLN A 317 92.29 -161.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 287 PRO A 288 -141.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ZN ION (ZN): ZN IONS PROBABLY CARRIED OVER FROM ZN REMARK 600 CONTAINING SEED SOLUTION. METAL ION VERIFIED BY ANOMALOUS REMARK 600 DIFFERENCE DENSITY. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1322 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 55 OE2 REMARK 620 2 GLU A 55 OE2 45.7 REMARK 620 3 ASP A 59 OD2 44.1 3.2 REMARK 620 4 ASP A 59 OD1 41.8 3.9 3.2 REMARK 620 5 HIS A 162 NE2 47.5 3.2 3.5 6.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1324 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 129 OE2 REMARK 620 2 HIS A 151 ND1 90.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1323 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 270 OE1 REMARK 620 2 HIS A 312 NE2 81.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1324 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Y5P RELATED DB: PDB REMARK 900 B-REPEAT OF LISTERIA MONOCYTOGENES INLB (INTERNALIN B) REMARK 900 RELATED ID: 1H6T RELATED DB: PDB REMARK 900 INTERNALIN B: CRYSTAL STRUCTURE OF FUSED N-TERMINAL DOMAINS. REMARK 900 RELATED ID: 2WQW RELATED DB: PDB REMARK 900 DOUBLE-DISULFIDE CROSS-LINKED CRYSTAL DIMER OF THE LISTERIA REMARK 900 MONOCYTOGENES INLB INTERNALIN DOMAIN REMARK 900 RELATED ID: 1OTM RELATED DB: PDB REMARK 900 CALCIUM-BINDING MUTANT OF THE INTERNALIN B LRR DOMAIN REMARK 900 RELATED ID: 2UZX RELATED DB: PDB REMARK 900 STRUCTURE OF THE HUMAN RECEPTOR TYROSINE KINASE MET IN COMPLEX WITH REMARK 900 THE LISTERIA MONOCYTOGENES INVASION PROTEIN INLB: CRYSTAL FORM I REMARK 900 RELATED ID: 1OTN RELATED DB: PDB REMARK 900 CALCIUM-BINDING MUTANT OF THE INTERNALIN B LRR DOMAIN REMARK 900 RELATED ID: 2WQV RELATED DB: PDB REMARK 900 INTERNALIN DOMAIN OF LISTERIA MONOCYTOGENES INLB: RHOMBOHEDRAL REMARK 900 CRYSTAL FORM REMARK 900 RELATED ID: 2WQU RELATED DB: PDB REMARK 900 INTERNALIN DOMAIN OF LISTERIA MONOCYTOGENES INLB: TRICLINIC CRYSTAL REMARK 900 FORM REMARK 900 RELATED ID: 2UZY RELATED DB: PDB REMARK 900 STRUCTURE OF THE HUMAN RECEPTOR TYROSINE KINASE MET IN COMPLEX WITH REMARK 900 THE LISTERIA MONOCYTOGENES INVASION PROTEIN INLB: LOW RESOLUTION, REMARK 900 CRYSTAL FORM II REMARK 900 RELATED ID: 1M9S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF INTERNALIN B (INLB), A LISTERIAMONOCYTOGENES REMARK 900 VIRULENCE PROTEIN CONTAINING SH3- LIKEDOMAINS. REMARK 900 RELATED ID: 1OTO RELATED DB: PDB REMARK 900 CALCIUM-BINDING MUTANT OF THE INTERNALIN B LRR DOMAIN REMARK 900 RELATED ID: 2WQX RELATED DB: PDB REMARK 900 INLB321_4R: S199R, D200R, G206R, A227R, C242A MUTANT OF THE REMARK 900 LISTERIA MONOCYTOGENES INLB INTERNALIN DOMAIN REMARK 900 RELATED ID: 1D0B RELATED DB: PDB REMARK 900 INTERNALIN B LEUCINE RICH REPEAT DOMAIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIVE N-TERMINAL RESIDUES GPLGS REMAIN AFTER PRESCISSION REMARK 999 PROTEASE CLEAVAGE OF THE GST TAG. DBREF 2Y5Q A 36 392 UNP P25147 INLB_LISMO 36 392 SEQADV 2Y5Q GLY A 31 UNP P25147 EXPRESSION TAG SEQADV 2Y5Q PRO A 32 UNP P25147 EXPRESSION TAG SEQADV 2Y5Q LEU A 33 UNP P25147 EXPRESSION TAG SEQADV 2Y5Q GLY A 34 UNP P25147 EXPRESSION TAG SEQADV 2Y5Q SER A 35 UNP P25147 EXPRESSION TAG SEQRES 1 A 362 GLY PRO LEU GLY SER GLU THR ILE THR VAL PRO THR PRO SEQRES 2 A 362 ILE LYS GLN ILE PHE SER ASP ASP ALA PHE ALA GLU THR SEQRES 3 A 362 ILE LYS ASP ASN LEU LYS LYS LYS SER VAL THR ASP ALA SEQRES 4 A 362 VAL THR GLN ASN GLU LEU ASN SER ILE ASP GLN ILE ILE SEQRES 5 A 362 ALA ASN ASN SER ASP ILE LYS SER VAL GLN GLY ILE GLN SEQRES 6 A 362 TYR LEU PRO ASN VAL THR LYS LEU PHE LEU ASN GLY ASN SEQRES 7 A 362 LYS LEU THR ASP ILE LYS PRO LEU ALA ASN LEU LYS ASN SEQRES 8 A 362 LEU GLY TRP LEU PHE LEU ASP GLU ASN LYS VAL LYS ASP SEQRES 9 A 362 LEU SER SER LEU LYS ASP LEU LYS LYS LEU LYS SER LEU SEQRES 10 A 362 SER LEU GLU HIS ASN GLY ILE SER ASP ILE ASN GLY LEU SEQRES 11 A 362 VAL HIS LEU PRO GLN LEU GLU SER LEU TYR LEU GLY ASN SEQRES 12 A 362 ASN LYS ILE THR ASP ILE THR VAL LEU SER ARG LEU THR SEQRES 13 A 362 LYS LEU ASP THR LEU SER LEU GLU ASP ASN GLN ILE SER SEQRES 14 A 362 ASP ILE VAL PRO LEU ALA GLY LEU THR LYS LEU GLN ASN SEQRES 15 A 362 LEU TYR LEU SER LYS ASN HIS ILE SER ASP LEU ARG ALA SEQRES 16 A 362 LEU ALA GLY LEU LYS ASN LEU ASP VAL LEU GLU LEU PHE SEQRES 17 A 362 SER GLN GLU CYS LEU ASN LYS PRO ILE ASN HIS GLN SER SEQRES 18 A 362 ASN LEU VAL VAL PRO ASN THR VAL LYS ASN THR ASP GLY SEQRES 19 A 362 SER LEU VAL THR PRO GLU ILE ILE SER ASP ASP GLY ASP SEQRES 20 A 362 TYR GLU LYS PRO ASN VAL LYS TRP HIS LEU PRO GLU PHE SEQRES 21 A 362 THR ASN GLU VAL SER PHE ILE PHE TYR GLN PRO VAL THR SEQRES 22 A 362 ILE GLY LYS ALA LYS ALA ARG PHE HIS GLY ARG VAL THR SEQRES 23 A 362 GLN PRO LEU LYS GLU VAL TYR THR VAL SER TYR ASP VAL SEQRES 24 A 362 ASP GLY THR VAL ILE LYS THR LYS VAL GLU ALA GLY THR SEQRES 25 A 362 ARG ILE THR ALA PRO LYS PRO PRO THR LYS GLN GLY TYR SEQRES 26 A 362 VAL PHE LYS GLY TRP TYR THR GLU LYS ASN GLY GLY HIS SEQRES 27 A 362 GLU TRP ASN PHE ASN THR ASP TYR MET SER GLY ASN ASP SEQRES 28 A 362 PHE THR LEU TYR ALA VAL PHE LYS ALA GLU THR HET ZN A1322 1 HET ZN A1323 1 HET ZN A1324 1 HETNAM ZN ZINC ION FORMUL 2 ZN 3(ZN 2+) HELIX 1 1 ILE A 44 PHE A 48 1 5 HELIX 2 2 ASP A 50 LEU A 61 1 12 HELIX 3 3 THR A 71 SER A 77 1 7 HELIX 4 4 GLY A 93 LEU A 97 5 5 HELIX 5 5 ILE A 113 ALA A 117 5 5 HELIX 6 6 ASP A 134 LEU A 141 5 8 HELIX 7 7 ILE A 157 LEU A 163 5 7 HELIX 8 8 ILE A 179 LEU A 185 5 7 HELIX 9 9 ILE A 201 ALA A 205 5 5 HELIX 10 10 LEU A 223 ALA A 227 5 5 SHEET 1 AA 2 THR A 42 PRO A 43 0 SHEET 2 AA 2 ALA A 69 VAL A 70 -1 O VAL A 70 N THR A 42 SHEET 1 AB 8 GLN A 80 ILE A 82 0 SHEET 2 AB 8 LYS A 102 PHE A 104 1 O LYS A 102 N ILE A 81 SHEET 3 AB 8 TRP A 124 PHE A 126 1 O TRP A 124 N LEU A 103 SHEET 4 AB 8 SER A 146 SER A 148 1 O SER A 146 N LEU A 125 SHEET 5 AB 8 SER A 168 TYR A 170 1 O SER A 168 N LEU A 147 SHEET 6 AB 8 THR A 190 SER A 192 1 O THR A 190 N LEU A 169 SHEET 7 AB 8 ASN A 212 TYR A 214 1 O ASN A 212 N LEU A 191 SHEET 8 AB 8 VAL A 234 GLU A 236 1 O VAL A 234 N LEU A 213 SHEET 1 AC 2 GLN A 240 CYS A 242 0 SHEET 2 AC 2 ALA A 307 LYS A 320 1 O HIS A 312 N GLN A 240 SHEET 1 AD 2 ILE A 247 ASN A 248 0 SHEET 2 AD 2 ALA A 307 LYS A 320 -1 O PRO A 318 N ILE A 247 SHEET 1 AE 4 PRO A 269 ILE A 272 0 SHEET 2 AE 4 GLU A 293 ILE A 304 -1 O ILE A 297 N GLU A 270 SHEET 3 AE 4 ALA A 307 LYS A 320 -1 O ALA A 307 N ILE A 304 SHEET 4 AE 4 ILE A 247 ASN A 248 -1 O ILE A 247 N LYS A 320 SHEET 1 AF 4 PRO A 269 ILE A 272 0 SHEET 2 AF 4 GLU A 293 ILE A 304 -1 O ILE A 297 N GLU A 270 SHEET 3 AF 4 ALA A 307 LYS A 320 -1 O ALA A 307 N ILE A 304 SHEET 4 AF 4 GLN A 240 CYS A 242 1 O GLN A 240 N ARG A 314 SHEET 1 AG 3 VAL A 254 PRO A 256 0 SHEET 2 AG 3 ASN A 282 LYS A 284 -1 O VAL A 283 N VAL A 255 SHEET 3 AG 3 ASP A 277 GLU A 279 -1 O ASP A 277 N LYS A 284 LINK OE2 GLU A 55 ZN ZN A1322 1555 2544 1.71 LINK OE2 GLU A 55 ZN ZN A1322 3655 1555 1.71 LINK OD2 ASP A 59 ZN ZN A1322 3655 1555 2.25 LINK OD1 ASP A 59 ZN ZN A1322 3655 1555 2.52 LINK OE2 GLU A 129 ZN ZN A1324 6555 1555 1.93 LINK ND1 HIS A 151 ZN ZN A1324 6555 1555 2.11 LINK NE2 HIS A 162 ZN ZN A1322 1555 1555 2.31 LINK OE1 GLU A 270 ZN ZN A1323 1555 1555 2.38 LINK NE2 HIS A 312 ZN ZN A1323 1555 1555 2.17 CISPEP 1 LYS A 280 PRO A 281 0 0.46 SITE 1 AC1 3 GLU A 55 ASP A 59 HIS A 162 SITE 1 AC2 2 GLU A 270 HIS A 312 SITE 1 AC3 4 GLU A 129 HIS A 151 ASP A 275 HIS A 286 CRYST1 126.400 126.400 107.860 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007911 0.004568 0.000000 0.00000 SCALE2 0.000000 0.009135 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009271 0.00000