HEADER ISOMERASE 19-JAN-11 2Y63 TITLE CRYSTAL STRUCTURE OF LEISHMANIAL E65Q-TIM COMPLEXED WITH TITLE 2 BROMOHYDROXYACETONE PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.3.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: COVALENT LINK BETWEEN A167 AND BBR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MEXICANA; SOURCE 3 ORGANISM_TAXID: 5665; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS ISOMERASE, FATTY ACID BIOSYNTHESIS, TRANSITION STATE ANALOGUE, KEYWDS 2 GLYCOLYSIS, PENTOSE SHUNT, GLUCONEOGENESIS, TIM, GOP, GLYCOSOME, KEYWDS 3 LIPID SYNTHESIS, TRANSITION STATE EXPDTA X-RAY DIFFRACTION AUTHOR R.VENKATESAN,M.ALAHUHTA,P.M.PIHKO,R.K.WIERENGA REVDAT 3 20-DEC-23 2Y63 1 REMARK LINK REVDAT 2 28-JUN-17 2Y63 1 REMARK REVDAT 1 14-DEC-11 2Y63 0 JRNL AUTH R.VENKATESAN,M.ALAHUHTA,P.M.PIHKO,R.K.WIERENGA JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURES OF TRIOSEPHOSPHATE JRNL TITL 2 ISOMERASE COMPLEXED WITH ITS SUICIDE INHIBITORS: THE JRNL TITL 3 CONFORMATIONAL FLEXIBILITY OF THE CATALYTIC GLUTAMATE IN ITS JRNL TITL 4 CLOSED, LIGANDED ACTIVE SITE. JRNL REF PROTEIN SCI. V. 20 1387 2011 JRNL REFN ISSN 0961-8368 JRNL PMID 21633986 JRNL DOI 10.1002/PRO.667 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 17427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 936 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1282 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.1460 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.1800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1900 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 429 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : -0.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.669 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1987 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2710 ; 1.110 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 248 ; 5.796 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;41.651 ;25.125 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 344 ;11.525 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ; 6.848 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 328 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1452 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1250 ; 0.307 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2040 ; 0.605 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 737 ; 1.211 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 670 ; 2.097 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 250 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1881 -0.1817 9.7521 REMARK 3 T TENSOR REMARK 3 T11: 0.0081 T22: 0.0046 REMARK 3 T33: 0.0138 T12: -0.0012 REMARK 3 T13: 0.0033 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.5114 L22: 0.2969 REMARK 3 L33: 0.5353 L12: -0.1224 REMARK 3 L13: 0.0795 L23: -0.0524 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: -0.0111 S13: -0.0351 REMARK 3 S21: 0.0013 S22: 0.0097 S23: -0.0286 REMARK 3 S31: 0.0254 S32: 0.0234 S33: 0.0218 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2Y63 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1290047028. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18363 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.05000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 20.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1N55 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 6000, 0.1 M SODIUM ACETATE PH REMARK 280 4.5 - 5.5, 1MM DTT, 1MM EDTA, 1MM NAN3., PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.94000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.33150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.94000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.33150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2060 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 66 TO GLN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 SER A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 -148.81 53.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2024 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A2026 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A2030 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A2031 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A2032 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A2049 DISTANCE = 7.47 ANGSTROMS REMARK 525 HOH A2066 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A2082 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A2084 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A2085 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A2088 DISTANCE = 7.22 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 BROMOHYDROXYACETONE PHOSPHATE IS REPRESENTED BY RESIDUE BBR REMARK 600 (SYSTEMATIC NAME: 3-BROMO-2-OXO-PROPOXYPHOSPHONIC ACID) AFTER REMARK 600 REACTION AT THE BROMINE ATOM. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BBR A 1251 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1N55 RELATED DB: PDB REMARK 900 0.83A RESOLUTION STRUCTURE OF THE E65Q MUTANT OF LEISHMANIAMEXICANA REMARK 900 TRIOSEPHOSPHATE ISOMERASE COMPLEXED WITH 2-PHOSPHOGLYCOLATE REMARK 900 RELATED ID: 1QDS RELATED DB: PDB REMARK 900 SUPERSTABLE E65Q MUTANT OF LEISHMANIA MEXICANA TRIOSEPHOSPHATE REMARK 900 ISOMERASE (TIM) REMARK 900 RELATED ID: 2VXN RELATED DB: PDB REMARK 900 E65Q-TIM COMPLEXED WITH PHOSPHOGLYCOLOHYDROXAMATE AT 0.82 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1AMK RELATED DB: PDB REMARK 900 LEISHMANIA MEXICANA TRIOSE PHOSPHATE ISOMERASE REMARK 900 RELATED ID: 1IF2 RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF LEISHMANIA MEXICANA TRIOSEPHOSPHATEISOMERASE REMARK 900 COMPLEXED WITH IPP REMARK 900 RELATED ID: 2Y61 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LEISHMANIAL E65Q-TIM COMPLEXED WITH S-GLYCIDOL REMARK 900 PHOSPHATE REMARK 900 RELATED ID: 2Y62 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LEISHMANIAL E65Q-TIM COMPLEXED WITH R-GLYCIDOL REMARK 900 PHOSPHATE DBREF 2Y63 A 0 250 UNP P48499 TPIS_LEIME 1 251 SEQADV 2Y63 GLN A 65 UNP P48499 GLU 66 ENGINEERED MUTATION SEQRES 1 A 251 MET SER ALA LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP SEQRES 2 A 251 LYS CYS ASN GLY THR THR ALA SER ILE GLU LYS LEU VAL SEQRES 3 A 251 GLN VAL PHE ASN GLU HIS THR ILE SER HIS ASP VAL GLN SEQRES 4 A 251 CYS VAL VAL ALA PRO THR PHE VAL HIS ILE PRO LEU VAL SEQRES 5 A 251 GLN ALA LYS LEU ARG ASN PRO LYS TYR VAL ILE SER ALA SEQRES 6 A 251 GLN ASN ALA ILE ALA LYS SER GLY ALA PHE THR GLY GLU SEQRES 7 A 251 VAL SER MET PRO ILE LEU LYS ASP ILE GLY VAL HIS TRP SEQRES 8 A 251 VAL ILE LEU GLY HIS SER GLU ARG ARG THR TYR TYR GLY SEQRES 9 A 251 GLU THR ASP GLU ILE VAL ALA GLN LYS VAL SER GLU ALA SEQRES 10 A 251 CYS LYS GLN GLY PHE MET VAL ILE ALA CYS ILE GLY GLU SEQRES 11 A 251 THR LEU GLN GLN ARG GLU ALA ASN GLN THR ALA LYS VAL SEQRES 12 A 251 VAL LEU SER GLN THR SER ALA ILE ALA ALA LYS LEU THR SEQRES 13 A 251 LYS ASP ALA TRP ASN GLN VAL VAL LEU ALA TYR GLU PRO SEQRES 14 A 251 VAL TRP ALA ILE GLY THR GLY LYS VAL ALA THR PRO GLU SEQRES 15 A 251 GLN ALA GLN GLU VAL HIS LEU LEU LEU ARG LYS TRP VAL SEQRES 16 A 251 SER GLU ASN ILE GLY THR ASP VAL ALA ALA LYS LEU ARG SEQRES 17 A 251 ILE LEU TYR GLY GLY SER VAL ASN ALA ALA ASN ALA ALA SEQRES 18 A 251 THR LEU TYR ALA LYS PRO ASP ILE ASN GLY PHE LEU VAL SEQRES 19 A 251 GLY GLY ALA SER LEU LYS PRO GLU PHE ARG ASP ILE ILE SEQRES 20 A 251 ASP ALA THR ARG HET BBR A1251 9 HETNAM BBR (3-BROMO-2-OXO-PROPOXY)PHOSPHONIC ACID FORMUL 2 BBR C3 H6 BR O5 P FORMUL 3 HOH *429(H2 O) HELIX 1 1 THR A 17 HIS A 31 1 15 HELIX 2 2 THR A 44 VAL A 46 5 3 HELIX 3 3 HIS A 47 LEU A 55 1 9 HELIX 4 4 SER A 79 ILE A 86 1 8 HELIX 5 5 HIS A 95 TYR A 102 1 8 HELIX 6 6 THR A 105 GLN A 119 1 15 HELIX 7 7 THR A 130 ALA A 136 1 7 HELIX 8 8 GLN A 138 ALA A 152 1 15 HELIX 9 9 THR A 155 ASN A 160 5 6 HELIX 10 10 PRO A 168 ILE A 172 5 5 HELIX 11 11 THR A 179 ILE A 198 1 20 HELIX 12 12 GLY A 199 LEU A 206 1 8 HELIX 13 13 ASN A 218 ALA A 224 1 7 HELIX 14 14 GLY A 234 PRO A 240 5 7 HELIX 15 15 GLU A 241 ALA A 248 1 8 SHEET 1 AA 9 ILE A 7 ASN A 11 0 SHEET 2 AA 9 GLN A 38 ALA A 42 1 O GLN A 38 N ALA A 8 SHEET 3 AA 9 TYR A 60 ALA A 64 1 O VAL A 61 N VAL A 41 SHEET 4 AA 9 TRP A 90 LEU A 93 1 O TRP A 90 N ALA A 64 SHEET 5 AA 9 MET A 122 ILE A 127 1 O MET A 122 N VAL A 91 SHEET 6 AA 9 VAL A 162 TYR A 166 1 O VAL A 163 N ALA A 125 SHEET 7 AA 9 ARG A 207 GLY A 211 1 O ARG A 207 N LEU A 164 SHEET 8 AA 9 GLY A 230 VAL A 233 1 O GLY A 230 N TYR A 210 SHEET 9 AA 9 ILE A 7 ASN A 11 1 O ILE A 7 N PHE A 231 LINK OE2 GLU A 167 C3 BBR A1251 1555 1555 1.48 SITE 1 AC1 14 LYS A 13 HIS A 95 GLU A 167 ALA A 171 SITE 2 AC1 14 ILE A 172 GLY A 173 SER A 213 LEU A 232 SITE 3 AC1 14 GLY A 234 GLY A 235 HOH A2033 HOH A2387 SITE 4 AC1 14 HOH A2428 HOH A2429 CRYST1 99.880 50.663 58.830 90.00 118.14 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010012 0.000000 0.005355 0.00000 SCALE2 0.000000 0.019738 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019277 0.00000