data_2Y8B # _entry.id 2Y8B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2Y8B PDBE EBI-47269 WWPDB D_1290047269 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2Y8A unspecified ;VIM-7 WITH OXIDISED. STRUCTURAL AND COMPUTATIONAL INVESTIGATIONS OF VIM-7: INSIGHTS INTO THE SUBSTRATE SPECIFICITY OF VIM METALLO-BETA-LACTAMASES ; PDB 2Y87 unspecified ;NATIVE VIM-7. STRUCTURAL AND COMPUTATIONAL INVESTIGATIONS OF VIM-7: INSIGHTS INTO THE SUBSTRATE SPECIFICITY OF VIM METALLO-BETA-LACTAMASES ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Y8B _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-02-03 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Saradhi, P.' 1 'Leiros, H.-K.S.' 2 'Ahmad, R.' 3 'Spencer, J.' 4 'Leiros, I.' 5 'Walsh, T.R.' 6 'Sundsfjord, A.' 7 'Samuelsen, O.' 8 # _citation.id primary _citation.title 'Structural and Computational Investigations of Vim- 7: Insights Into the Substrate Specificity of Vim Metallo-Beta-Lactamases' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 411 _citation.page_first 174 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21645522 _citation.pdbx_database_id_DOI 10.1016/J.JMB.2011.05.035 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Saradhi, P.' 1 primary 'Leiros, H.-K.S.' 2 primary 'Ahmad, R.' 3 primary 'Spencer, J.' 4 primary 'Leiros, I.' 5 primary 'Walsh, T.R.' 6 primary 'Sundsfjord, A.' 7 primary 'Samuelsen, O.' 8 # _cell.entry_id 2Y8B _cell.length_a 69.758 _cell.length_b 69.758 _cell.length_c 46.942 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y8B _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man METALLO-B-LACTAMASE 28189.842 1 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 3 water nat water 18.015 188 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'METALLO-BETA-LACTAMASE VIM-7, METALLO-BETA-LACTAMASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MFQIRSFLVGISAFVMAVLGSAAYSAQPGGEYPTVDDIPVGEVRLYKIGDGVWSHIATQKLGDTVYSSNGLIVRDADELL LIDTAWGAKNTVALLAEIEKQIGLPVTRSISTHFHDDRVGGVDVLRAAGVATYTSPLTRQLAEAAGNEVPAHSLKALSSS GDVVRFGPVEVFYPGAAHSGDNLVVYVPAVRVLFGG(OCS)AVHEASRESAGNVADANLAEWPATIKRIQQRYPEAEVVI PGHGLPGGLELLQHTTNVVKTHKVRPVAE ; _entity_poly.pdbx_seq_one_letter_code_can ;MFQIRSFLVGISAFVMAVLGSAAYSAQPGGEYPTVDDIPVGEVRLYKIGDGVWSHIATQKLGDTVYSSNGLIVRDADELL LIDTAWGAKNTVALLAEIEKQIGLPVTRSISTHFHDDRVGGVDVLRAAGVATYTSPLTRQLAEAAGNEVPAHSLKALSSS GDVVRFGPVEVFYPGAAHSGDNLVVYVPAVRVLFGGCAVHEASRESAGNVADANLAEWPATIKRIQQRYPEAEVVIPGHG LPGGLELLQHTTNVVKTHKVRPVAE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PHE n 1 3 GLN n 1 4 ILE n 1 5 ARG n 1 6 SER n 1 7 PHE n 1 8 LEU n 1 9 VAL n 1 10 GLY n 1 11 ILE n 1 12 SER n 1 13 ALA n 1 14 PHE n 1 15 VAL n 1 16 MET n 1 17 ALA n 1 18 VAL n 1 19 LEU n 1 20 GLY n 1 21 SER n 1 22 ALA n 1 23 ALA n 1 24 TYR n 1 25 SER n 1 26 ALA n 1 27 GLN n 1 28 PRO n 1 29 GLY n 1 30 GLY n 1 31 GLU n 1 32 TYR n 1 33 PRO n 1 34 THR n 1 35 VAL n 1 36 ASP n 1 37 ASP n 1 38 ILE n 1 39 PRO n 1 40 VAL n 1 41 GLY n 1 42 GLU n 1 43 VAL n 1 44 ARG n 1 45 LEU n 1 46 TYR n 1 47 LYS n 1 48 ILE n 1 49 GLY n 1 50 ASP n 1 51 GLY n 1 52 VAL n 1 53 TRP n 1 54 SER n 1 55 HIS n 1 56 ILE n 1 57 ALA n 1 58 THR n 1 59 GLN n 1 60 LYS n 1 61 LEU n 1 62 GLY n 1 63 ASP n 1 64 THR n 1 65 VAL n 1 66 TYR n 1 67 SER n 1 68 SER n 1 69 ASN n 1 70 GLY n 1 71 LEU n 1 72 ILE n 1 73 VAL n 1 74 ARG n 1 75 ASP n 1 76 ALA n 1 77 ASP n 1 78 GLU n 1 79 LEU n 1 80 LEU n 1 81 LEU n 1 82 ILE n 1 83 ASP n 1 84 THR n 1 85 ALA n 1 86 TRP n 1 87 GLY n 1 88 ALA n 1 89 LYS n 1 90 ASN n 1 91 THR n 1 92 VAL n 1 93 ALA n 1 94 LEU n 1 95 LEU n 1 96 ALA n 1 97 GLU n 1 98 ILE n 1 99 GLU n 1 100 LYS n 1 101 GLN n 1 102 ILE n 1 103 GLY n 1 104 LEU n 1 105 PRO n 1 106 VAL n 1 107 THR n 1 108 ARG n 1 109 SER n 1 110 ILE n 1 111 SER n 1 112 THR n 1 113 HIS n 1 114 PHE n 1 115 HIS n 1 116 ASP n 1 117 ASP n 1 118 ARG n 1 119 VAL n 1 120 GLY n 1 121 GLY n 1 122 VAL n 1 123 ASP n 1 124 VAL n 1 125 LEU n 1 126 ARG n 1 127 ALA n 1 128 ALA n 1 129 GLY n 1 130 VAL n 1 131 ALA n 1 132 THR n 1 133 TYR n 1 134 THR n 1 135 SER n 1 136 PRO n 1 137 LEU n 1 138 THR n 1 139 ARG n 1 140 GLN n 1 141 LEU n 1 142 ALA n 1 143 GLU n 1 144 ALA n 1 145 ALA n 1 146 GLY n 1 147 ASN n 1 148 GLU n 1 149 VAL n 1 150 PRO n 1 151 ALA n 1 152 HIS n 1 153 SER n 1 154 LEU n 1 155 LYS n 1 156 ALA n 1 157 LEU n 1 158 SER n 1 159 SER n 1 160 SER n 1 161 GLY n 1 162 ASP n 1 163 VAL n 1 164 VAL n 1 165 ARG n 1 166 PHE n 1 167 GLY n 1 168 PRO n 1 169 VAL n 1 170 GLU n 1 171 VAL n 1 172 PHE n 1 173 TYR n 1 174 PRO n 1 175 GLY n 1 176 ALA n 1 177 ALA n 1 178 HIS n 1 179 SER n 1 180 GLY n 1 181 ASP n 1 182 ASN n 1 183 LEU n 1 184 VAL n 1 185 VAL n 1 186 TYR n 1 187 VAL n 1 188 PRO n 1 189 ALA n 1 190 VAL n 1 191 ARG n 1 192 VAL n 1 193 LEU n 1 194 PHE n 1 195 GLY n 1 196 GLY n 1 197 OCS n 1 198 ALA n 1 199 VAL n 1 200 HIS n 1 201 GLU n 1 202 ALA n 1 203 SER n 1 204 ARG n 1 205 GLU n 1 206 SER n 1 207 ALA n 1 208 GLY n 1 209 ASN n 1 210 VAL n 1 211 ALA n 1 212 ASP n 1 213 ALA n 1 214 ASN n 1 215 LEU n 1 216 ALA n 1 217 GLU n 1 218 TRP n 1 219 PRO n 1 220 ALA n 1 221 THR n 1 222 ILE n 1 223 LYS n 1 224 ARG n 1 225 ILE n 1 226 GLN n 1 227 GLN n 1 228 ARG n 1 229 TYR n 1 230 PRO n 1 231 GLU n 1 232 ALA n 1 233 GLU n 1 234 VAL n 1 235 VAL n 1 236 ILE n 1 237 PRO n 1 238 GLY n 1 239 HIS n 1 240 GLY n 1 241 LEU n 1 242 PRO n 1 243 GLY n 1 244 GLY n 1 245 LEU n 1 246 GLU n 1 247 LEU n 1 248 LEU n 1 249 GLN n 1 250 HIS n 1 251 THR n 1 252 THR n 1 253 ASN n 1 254 VAL n 1 255 VAL n 1 256 LYS n 1 257 THR n 1 258 HIS n 1 259 LYS n 1 260 VAL n 1 261 ARG n 1 262 PRO n 1 263 VAL n 1 264 ALA n 1 265 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'PSEUDOMONAS AERUGINOSA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q840P9_PSEAE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q840P9 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2Y8B _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 265 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q840P9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 265 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 300 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OCS 'L-peptide linking' n 'CYSTEINESULFONIC ACID' ? 'C3 H7 N O5 S' 169.156 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2Y8B _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_percent_sol 57 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '22.5-23.5% POLYETHYLENE GLYCOL MONOMETHYL ETHERS (PEG MME) 2K, 0.1 M CALCIUM ACETATE AND 0.1 M SODIUM CACODYLATE PH 5.0' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91969 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength 0.91969 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2Y8B _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 28.00 _reflns.d_resolution_high 1.70 _reflns.number_obs 24756 _reflns.number_all ? _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.10 _reflns.B_iso_Wilson_estimate 16.4 _reflns.pdbx_redundancy 3.2 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.79 _reflns_shell.percent_possible_all 95.0 _reflns_shell.Rmerge_I_obs 0.38 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.30 _reflns_shell.pdbx_redundancy 2.8 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2Y8B _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 22302 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.00 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 99.13 _refine.ls_R_factor_obs 0.17535 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17115 _refine.ls_R_factor_R_free 0.21472 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 2430 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.932 _refine.B_iso_mean 12.542 _refine.aniso_B[1][1] 0.01 _refine.aniso_B[2][2] 0.01 _refine.aniso_B[3][3] -0.02 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.109 _refine.pdbx_overall_ESU_R_Free 0.111 _refine.overall_SU_ML 0.069 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.091 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1701 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 188 _refine_hist.number_atoms_total 1891 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 28.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.022 ? 1743 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1119 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.685 1.950 ? 2375 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.097 3.000 ? 2731 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.759 5.000 ? 222 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.910 24.054 ? 74 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.751 15.000 ? 258 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.269 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.136 0.200 ? 281 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.021 ? 1941 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 335 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.013 1.500 ? 1127 'X-RAY DIFFRACTION' ? r_mcbond_other 0.293 1.500 ? 467 'X-RAY DIFFRACTION' ? r_mcangle_it 1.693 2.000 ? 1805 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.587 3.000 ? 616 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 4.165 4.500 ? 570 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.701 _refine_ls_shell.d_res_low 1.745 _refine_ls_shell.number_reflns_R_work 1509 _refine_ls_shell.R_factor_R_work 0.302 _refine_ls_shell.percent_reflns_obs 90.05 _refine_ls_shell.R_factor_R_free 0.374 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 156 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2Y8B _struct.title ;VIM-7 with Oxidised. Structural and computational investigations of VIM-7: Insights into the substrate specificity of VIM metallo-beta- lactamases ; _struct.pdbx_descriptor METALLO-B-LACTAMASE _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Y8B _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, CEPHALOSPORINS, ANTIBIOTIC RECOGNITION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 87 ? ILE A 102 ? GLY A 88 ILE A 104 1 ? 16 HELX_P HELX_P2 2 HIS A 115 ? GLY A 120 ? HIS A 118 GLY A 123 1 ? 6 HELX_P HELX_P3 3 GLY A 121 ? ALA A 128 ? GLY A 124 ALA A 131 1 ? 8 HELX_P HELX_P4 4 SER A 135 ? ALA A 145 ? SER A 139 ALA A 149 1 ? 11 HELX_P HELX_P5 5 OCS A 197 ? VAL A 199 ? OCS A 221 VAL A 223 5 ? 3 HELX_P HELX_P6 6 GLU A 217 ? TYR A 229 ? GLU A 241 TYR A 253 1 ? 13 HELX_P HELX_P7 7 LEU A 245 ? LYS A 256 ? LEU A 280 LYS A 291 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLY 196 C ? ? ? 1_555 A OCS 197 N ? ? A GLY 220 A OCS 221 1_555 ? ? ? ? ? ? ? 1.335 ? metalc1 metalc ? ? A OCS 197 SG ? ? ? 1_555 C ZN . ZN ? ? A OCS 221 A ZN 1293 1_555 ? ? ? ? ? ? ? 2.034 ? metalc2 metalc ? ? A OCS 197 OD1 ? ? ? 1_555 C ZN . ZN ? ? A OCS 221 A ZN 1293 1_555 ? ? ? ? ? ? ? 2.369 ? covale2 covale ? ? A OCS 197 C ? ? ? 1_555 A ALA 198 N ? ? A OCS 221 A ALA 222 1_555 ? ? ? ? ? ? ? 1.320 ? metalc3 metalc ? ? B ZN . ZN ? ? ? 1_555 A HIS 113 NE2 ? ? A ZN 1292 A HIS 116 1_555 ? ? ? ? ? ? ? 2.132 ? metalc4 metalc ? ? B ZN . ZN ? ? ? 1_555 A HIS 178 NE2 ? ? A ZN 1292 A HIS 196 1_555 ? ? ? ? ? ? ? 2.033 ? metalc5 metalc ? ? B ZN . ZN ? ? ? 1_555 D HOH . O ? ? A ZN 1292 A HOH 2187 1_555 ? ? ? ? ? ? ? 2.642 ? metalc6 metalc ? ? B ZN . ZN ? ? ? 1_555 D HOH . O ? ? A ZN 1292 A HOH 2188 1_555 ? ? ? ? ? ? ? 1.954 ? metalc7 metalc ? ? B ZN . ZN ? ? ? 1_555 A HIS 115 ND1 ? ? A ZN 1292 A HIS 118 1_555 ? ? ? ? ? ? ? 1.980 ? metalc8 metalc ? ? C ZN . ZN ? ? ? 1_555 D HOH . O ? ? A ZN 1293 A HOH 2188 1_555 ? ? ? ? ? ? ? 2.098 ? metalc9 metalc ? ? C ZN . ZN ? ? ? 1_555 A HIS 239 NE2 ? ? A ZN 1293 A HIS 263 1_555 ? ? ? ? ? ? ? 2.316 ? metalc10 metalc ? ? C ZN . ZN ? ? ? 1_555 A ASP 117 OD2 ? ? A ZN 1293 A ASP 120 1_555 ? ? ? ? ? ? ? 2.329 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 7 ? AB ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? parallel AA 5 6 ? parallel AA 6 7 ? parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ARG A 44 ? GLY A 49 ? ARG A 43 GLY A 49 AA 2 VAL A 52 ? LEU A 61 ? VAL A 52 LEU A 61 AA 3 THR A 64 ? ASP A 75 ? THR A 64 ASP A 76 AA 4 GLU A 78 ? ILE A 82 ? GLU A 79 ILE A 83 AA 5 VAL A 106 ? ILE A 110 ? VAL A 109 ILE A 113 AA 6 ALA A 131 ? THR A 134 ? ALA A 135 THR A 138 AA 7 HIS A 152 ? SER A 153 ? HIS A 170 SER A 171 AB 1 ASP A 162 ? PHE A 166 ? ASP A 180 PHE A 184 AB 2 VAL A 169 ? TYR A 173 ? VAL A 187 TYR A 191 AB 3 VAL A 184 ? VAL A 187 ? VAL A 202 VAL A 205 AB 4 VAL A 192 ? GLY A 196 ? VAL A 216 GLY A 220 AB 5 VAL A 234 ? PRO A 237 ? VAL A 258 PRO A 261 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 48 ? N ILE A 48 O VAL A 52 ? O VAL A 52 AA 2 3 N LEU A 61 ? N LEU A 61 O THR A 64 ? O THR A 64 AA 3 4 N ASP A 75 ? N ASP A 76 O GLU A 78 ? O GLU A 79 AA 4 5 O LEU A 79 ? O LEU A 80 N THR A 107 ? N THR A 110 AA 5 6 N SER A 109 ? N SER A 112 O ALA A 131 ? O ALA A 135 AA 6 7 N THR A 134 ? N THR A 138 O HIS A 152 ? O HIS A 170 AB 1 2 N PHE A 166 ? N PHE A 184 O VAL A 169 ? O VAL A 187 AB 2 3 N PHE A 172 ? N PHE A 190 O VAL A 184 ? O VAL A 202 AB 3 4 N VAL A 187 ? N VAL A 205 O VAL A 192 ? O VAL A 216 AB 4 5 N LEU A 193 ? N LEU A 217 O VAL A 234 ? O VAL A 258 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE ZN A 1292' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE ZN A 1293' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HIS A 113 ? HIS A 116 . ? 1_555 ? 2 AC1 7 HIS A 115 ? HIS A 118 . ? 1_555 ? 3 AC1 7 HIS A 178 ? HIS A 196 . ? 1_555 ? 4 AC1 7 OCS A 197 ? OCS A 221 . ? 1_555 ? 5 AC1 7 ZN C . ? ZN A 1293 . ? 1_555 ? 6 AC1 7 HOH D . ? HOH A 2187 . ? 1_555 ? 7 AC1 7 HOH D . ? HOH A 2188 . ? 1_555 ? 8 AC2 5 ASP A 117 ? ASP A 120 . ? 1_555 ? 9 AC2 5 OCS A 197 ? OCS A 221 . ? 1_555 ? 10 AC2 5 HIS A 239 ? HIS A 263 . ? 1_555 ? 11 AC2 5 ZN B . ? ZN A 1292 . ? 1_555 ? 12 AC2 5 HOH D . ? HOH A 2188 . ? 1_555 ? # _database_PDB_matrix.entry_id 2Y8B _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2Y8B _atom_sites.fract_transf_matrix[1][1] 0.014335 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014335 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021303 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 PHE 2 1 ? ? ? A . n A 1 3 GLN 3 2 ? ? ? A . n A 1 4 ILE 4 3 ? ? ? A . n A 1 5 ARG 5 4 ? ? ? A . n A 1 6 SER 6 5 ? ? ? A . n A 1 7 PHE 7 6 ? ? ? A . n A 1 8 LEU 8 7 ? ? ? A . n A 1 9 VAL 9 8 ? ? ? A . n A 1 10 GLY 10 9 ? ? ? A . n A 1 11 ILE 11 10 ? ? ? A . n A 1 12 SER 12 11 ? ? ? A . n A 1 13 ALA 13 12 ? ? ? A . n A 1 14 PHE 14 13 ? ? ? A . n A 1 15 VAL 15 14 ? ? ? A . n A 1 16 MET 16 15 ? ? ? A . n A 1 17 ALA 17 16 ? ? ? A . n A 1 18 VAL 18 17 ? ? ? A . n A 1 19 LEU 19 18 ? ? ? A . n A 1 20 GLY 20 19 ? ? ? A . n A 1 21 SER 21 20 ? ? ? A . n A 1 22 ALA 22 21 ? ? ? A . n A 1 23 ALA 23 22 ? ? ? A . n A 1 24 TYR 24 23 ? ? ? A . n A 1 25 SER 25 24 ? ? ? A . n A 1 26 ALA 26 25 ? ? ? A . n A 1 27 GLN 27 26 ? ? ? A . n A 1 28 PRO 28 27 ? ? ? A . n A 1 29 GLY 29 28 ? ? ? A . n A 1 30 GLY 30 29 ? ? ? A . n A 1 31 GLU 31 30 30 GLU GLU A . n A 1 32 TYR 32 31 31 TYR TYR A . n A 1 33 PRO 33 32 32 PRO PRO A . n A 1 34 THR 34 33 33 THR THR A . n A 1 35 VAL 35 34 34 VAL VAL A . n A 1 36 ASP 36 35 35 ASP ASP A . n A 1 37 ASP 37 36 36 ASP ASP A . n A 1 38 ILE 38 37 37 ILE ILE A . n A 1 39 PRO 39 38 38 PRO PRO A . n A 1 40 VAL 40 39 39 VAL VAL A . n A 1 41 GLY 41 40 40 GLY GLY A . n A 1 42 GLU 42 41 41 GLU GLU A . n A 1 43 VAL 43 42 42 VAL VAL A . n A 1 44 ARG 44 43 43 ARG ARG A . n A 1 45 LEU 45 44 44 LEU LEU A . n A 1 46 TYR 46 45 45 TYR TYR A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 TRP 53 53 53 TRP TRP A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 HIS 55 55 55 HIS HIS A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 VAL 65 66 66 VAL VAL A . n A 1 66 TYR 66 67 67 TYR TYR A . n A 1 67 SER 67 68 68 SER SER A . n A 1 68 SER 68 69 69 SER SER A . n A 1 69 ASN 69 70 70 ASN ASN A . n A 1 70 GLY 70 71 71 GLY GLY A . n A 1 71 LEU 71 72 72 LEU LEU A . n A 1 72 ILE 72 73 73 ILE ILE A . n A 1 73 VAL 73 74 74 VAL VAL A . n A 1 74 ARG 74 75 75 ARG ARG A . n A 1 75 ASP 75 76 76 ASP ASP A . n A 1 76 ALA 76 77 77 ALA ALA A . n A 1 77 ASP 77 78 78 ASP ASP A . n A 1 78 GLU 78 79 79 GLU GLU A . n A 1 79 LEU 79 80 80 LEU LEU A . n A 1 80 LEU 80 81 81 LEU LEU A . n A 1 81 LEU 81 82 82 LEU LEU A . n A 1 82 ILE 82 83 83 ILE ILE A . n A 1 83 ASP 83 84 84 ASP ASP A . n A 1 84 THR 84 85 85 THR THR A . n A 1 85 ALA 85 86 86 ALA ALA A . n A 1 86 TRP 86 87 87 TRP TRP A . n A 1 87 GLY 87 88 88 GLY GLY A . n A 1 88 ALA 88 89 89 ALA ALA A . n A 1 89 LYS 89 90 90 LYS LYS A . n A 1 90 ASN 90 91 91 ASN ASN A . n A 1 91 THR 91 92 92 THR THR A . n A 1 92 VAL 92 93 93 VAL VAL A . n A 1 93 ALA 93 94 94 ALA ALA A . n A 1 94 LEU 94 95 95 LEU LEU A . n A 1 95 LEU 95 96 96 LEU LEU A . n A 1 96 ALA 96 97 97 ALA ALA A . n A 1 97 GLU 97 98 98 GLU GLU A . n A 1 98 ILE 98 99 99 ILE ILE A . n A 1 99 GLU 99 100 100 GLU GLU A . n A 1 100 LYS 100 102 102 LYS LYS A . n A 1 101 GLN 101 103 103 GLN GLN A . n A 1 102 ILE 102 104 104 ILE ILE A . n A 1 103 GLY 103 105 105 GLY GLY A . n A 1 104 LEU 104 106 106 LEU LEU A . n A 1 105 PRO 105 107 107 PRO PRO A . n A 1 106 VAL 106 109 109 VAL VAL A . n A 1 107 THR 107 110 110 THR THR A . n A 1 108 ARG 108 111 111 ARG ARG A . n A 1 109 SER 109 112 112 SER SER A . n A 1 110 ILE 110 113 113 ILE ILE A . n A 1 111 SER 111 114 114 SER SER A . n A 1 112 THR 112 115 115 THR THR A . n A 1 113 HIS 113 116 116 HIS HIS A . n A 1 114 PHE 114 117 117 PHE PHE A . n A 1 115 HIS 115 118 118 HIS HIS A . n A 1 116 ASP 116 119 119 ASP ASP A . n A 1 117 ASP 117 120 120 ASP ASP A . n A 1 118 ARG 118 121 121 ARG ARG A . n A 1 119 VAL 119 122 122 VAL VAL A . n A 1 120 GLY 120 123 123 GLY GLY A . n A 1 121 GLY 121 124 124 GLY GLY A . n A 1 122 VAL 122 125 125 VAL VAL A . n A 1 123 ASP 123 126 126 ASP ASP A . n A 1 124 VAL 124 127 127 VAL VAL A . n A 1 125 LEU 125 128 128 LEU LEU A . n A 1 126 ARG 126 129 129 ARG ARG A . n A 1 127 ALA 127 130 130 ALA ALA A . n A 1 128 ALA 128 131 131 ALA ALA A . n A 1 129 GLY 129 133 133 GLY GLY A . n A 1 130 VAL 130 134 134 VAL VAL A . n A 1 131 ALA 131 135 135 ALA ALA A . n A 1 132 THR 132 136 136 THR THR A . n A 1 133 TYR 133 137 137 TYR TYR A . n A 1 134 THR 134 138 138 THR THR A . n A 1 135 SER 135 139 139 SER SER A . n A 1 136 PRO 136 140 140 PRO PRO A . n A 1 137 LEU 137 141 141 LEU LEU A . n A 1 138 THR 138 142 142 THR THR A . n A 1 139 ARG 139 143 143 ARG ARG A . n A 1 140 GLN 140 144 144 GLN GLN A . n A 1 141 LEU 141 145 145 LEU LEU A . n A 1 142 ALA 142 146 146 ALA ALA A . n A 1 143 GLU 143 147 147 GLU GLU A . n A 1 144 ALA 144 148 148 ALA ALA A . n A 1 145 ALA 145 149 149 ALA ALA A . n A 1 146 GLY 146 150 150 GLY GLY A . n A 1 147 ASN 147 165 165 ASN ASN A . n A 1 148 GLU 148 166 166 GLU GLU A . n A 1 149 VAL 149 167 167 VAL VAL A . n A 1 150 PRO 150 168 168 PRO PRO A . n A 1 151 ALA 151 169 169 ALA ALA A . n A 1 152 HIS 152 170 170 HIS HIS A . n A 1 153 SER 153 171 171 SER SER A . n A 1 154 LEU 154 172 172 LEU LEU A . n A 1 155 LYS 155 173 173 LYS LYS A . n A 1 156 ALA 156 174 174 ALA ALA A . n A 1 157 LEU 157 175 175 LEU LEU A . n A 1 158 SER 158 176 176 SER SER A . n A 1 159 SER 159 177 177 SER SER A . n A 1 160 SER 160 178 178 SER SER A . n A 1 161 GLY 161 179 179 GLY GLY A . n A 1 162 ASP 162 180 180 ASP ASP A . n A 1 163 VAL 163 181 181 VAL VAL A . n A 1 164 VAL 164 182 182 VAL VAL A . n A 1 165 ARG 165 183 183 ARG ARG A . n A 1 166 PHE 166 184 184 PHE PHE A . n A 1 167 GLY 167 185 185 GLY GLY A . n A 1 168 PRO 168 186 186 PRO PRO A . n A 1 169 VAL 169 187 187 VAL VAL A . n A 1 170 GLU 170 188 188 GLU GLU A . n A 1 171 VAL 171 189 189 VAL VAL A . n A 1 172 PHE 172 190 190 PHE PHE A . n A 1 173 TYR 173 191 191 TYR TYR A . n A 1 174 PRO 174 192 192 PRO PRO A . n A 1 175 GLY 175 193 193 GLY GLY A . n A 1 176 ALA 176 194 194 ALA ALA A . n A 1 177 ALA 177 195 195 ALA ALA A . n A 1 178 HIS 178 196 196 HIS HIS A . n A 1 179 SER 179 197 197 SER SER A . n A 1 180 GLY 180 198 198 GLY GLY A . n A 1 181 ASP 181 199 199 ASP ASP A . n A 1 182 ASN 182 200 200 ASN ASN A . n A 1 183 LEU 183 201 201 LEU LEU A . n A 1 184 VAL 184 202 202 VAL VAL A . n A 1 185 VAL 185 203 203 VAL VAL A . n A 1 186 TYR 186 204 204 TYR TYR A . n A 1 187 VAL 187 205 205 VAL VAL A . n A 1 188 PRO 188 209 209 PRO PRO A . n A 1 189 ALA 189 210 210 ALA ALA A . n A 1 190 VAL 190 211 211 VAL VAL A . n A 1 191 ARG 191 215 215 ARG ARG A . n A 1 192 VAL 192 216 216 VAL VAL A . n A 1 193 LEU 193 217 217 LEU LEU A . n A 1 194 PHE 194 218 218 PHE PHE A . n A 1 195 GLY 195 219 219 GLY GLY A . n A 1 196 GLY 196 220 220 GLY GLY A . n A 1 197 OCS 197 221 221 OCS OCS A . n A 1 198 ALA 198 222 222 ALA ALA A . n A 1 199 VAL 199 223 223 VAL VAL A . n A 1 200 HIS 200 224 224 HIS HIS A . n A 1 201 GLU 201 225 225 GLU GLU A . n A 1 202 ALA 202 226 226 ALA ALA A . n A 1 203 SER 203 227 227 SER SER A . n A 1 204 ARG 204 228 228 ARG ARG A . n A 1 205 GLU 205 229 229 GLU GLU A . n A 1 206 SER 206 230 230 SER SER A . n A 1 207 ALA 207 231 231 ALA ALA A . n A 1 208 GLY 208 232 232 GLY GLY A . n A 1 209 ASN 209 233 233 ASN ASN A . n A 1 210 VAL 210 234 234 VAL VAL A . n A 1 211 ALA 211 235 235 ALA ALA A . n A 1 212 ASP 212 236 236 ASP ASP A . n A 1 213 ALA 213 237 237 ALA ALA A . n A 1 214 ASN 214 238 238 ASN ASN A . n A 1 215 LEU 215 239 239 LEU LEU A . n A 1 216 ALA 216 240 240 ALA ALA A . n A 1 217 GLU 217 241 241 GLU GLU A . n A 1 218 TRP 218 242 242 TRP TRP A . n A 1 219 PRO 219 243 243 PRO PRO A . n A 1 220 ALA 220 244 244 ALA ALA A . n A 1 221 THR 221 245 245 THR THR A . n A 1 222 ILE 222 246 246 ILE ILE A . n A 1 223 LYS 223 247 247 LYS LYS A . n A 1 224 ARG 224 248 248 ARG ARG A . n A 1 225 ILE 225 249 249 ILE ILE A . n A 1 226 GLN 226 250 250 GLN GLN A . n A 1 227 GLN 227 251 251 GLN GLN A . n A 1 228 ARG 228 252 252 ARG ARG A . n A 1 229 TYR 229 253 253 TYR TYR A . n A 1 230 PRO 230 254 254 PRO PRO A . n A 1 231 GLU 231 255 255 GLU GLU A . n A 1 232 ALA 232 256 256 ALA ALA A . n A 1 233 GLU 233 257 257 GLU GLU A . n A 1 234 VAL 234 258 258 VAL VAL A . n A 1 235 VAL 235 259 259 VAL VAL A . n A 1 236 ILE 236 260 260 ILE ILE A . n A 1 237 PRO 237 261 261 PRO PRO A . n A 1 238 GLY 238 262 262 GLY GLY A . n A 1 239 HIS 239 263 263 HIS HIS A . n A 1 240 GLY 240 264 264 GLY GLY A . n A 1 241 LEU 241 265 265 LEU LEU A . n A 1 242 PRO 242 277 277 PRO PRO A . n A 1 243 GLY 243 278 278 GLY GLY A . n A 1 244 GLY 244 279 279 GLY GLY A . n A 1 245 LEU 245 280 280 LEU LEU A . n A 1 246 GLU 246 281 281 GLU GLU A . n A 1 247 LEU 247 282 282 LEU LEU A . n A 1 248 LEU 248 283 283 LEU LEU A . n A 1 249 GLN 249 284 284 GLN GLN A . n A 1 250 HIS 250 285 285 HIS HIS A . n A 1 251 THR 251 286 286 THR THR A . n A 1 252 THR 252 287 287 THR THR A . n A 1 253 ASN 253 288 288 ASN ASN A . n A 1 254 VAL 254 289 289 VAL VAL A . n A 1 255 VAL 255 290 290 VAL VAL A . n A 1 256 LYS 256 291 291 LYS LYS A . n A 1 257 THR 257 292 ? ? ? A . n A 1 258 HIS 258 293 ? ? ? A . n A 1 259 LYS 259 294 ? ? ? A . n A 1 260 VAL 260 295 ? ? ? A . n A 1 261 ARG 261 296 ? ? ? A . n A 1 262 PRO 262 297 ? ? ? A . n A 1 263 VAL 263 298 ? ? ? A . n A 1 264 ALA 264 299 ? ? ? A . n A 1 265 GLU 265 300 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 1292 1292 ZN ZN A . C 2 ZN 1 1293 1293 ZN ZN A . D 3 HOH 1 2001 2001 HOH HOH A . D 3 HOH 2 2002 2002 HOH HOH A . D 3 HOH 3 2003 2003 HOH HOH A . D 3 HOH 4 2004 2004 HOH HOH A . D 3 HOH 5 2005 2005 HOH HOH A . D 3 HOH 6 2006 2006 HOH HOH A . D 3 HOH 7 2007 2007 HOH HOH A . D 3 HOH 8 2008 2008 HOH HOH A . D 3 HOH 9 2009 2009 HOH HOH A . D 3 HOH 10 2010 2010 HOH HOH A . D 3 HOH 11 2011 2011 HOH HOH A . D 3 HOH 12 2012 2012 HOH HOH A . D 3 HOH 13 2013 2013 HOH HOH A . D 3 HOH 14 2014 2014 HOH HOH A . D 3 HOH 15 2015 2015 HOH HOH A . D 3 HOH 16 2016 2016 HOH HOH A . D 3 HOH 17 2017 2017 HOH HOH A . D 3 HOH 18 2018 2018 HOH HOH A . D 3 HOH 19 2019 2019 HOH HOH A . D 3 HOH 20 2020 2020 HOH HOH A . D 3 HOH 21 2021 2021 HOH HOH A . D 3 HOH 22 2022 2022 HOH HOH A . D 3 HOH 23 2023 2023 HOH HOH A . D 3 HOH 24 2024 2024 HOH HOH A . D 3 HOH 25 2025 2025 HOH HOH A . D 3 HOH 26 2026 2026 HOH HOH A . D 3 HOH 27 2027 2027 HOH HOH A . D 3 HOH 28 2028 2028 HOH HOH A . D 3 HOH 29 2029 2029 HOH HOH A . D 3 HOH 30 2030 2030 HOH HOH A . D 3 HOH 31 2031 2031 HOH HOH A . D 3 HOH 32 2032 2032 HOH HOH A . D 3 HOH 33 2033 2033 HOH HOH A . D 3 HOH 34 2034 2034 HOH HOH A . D 3 HOH 35 2035 2035 HOH HOH A . D 3 HOH 36 2036 2036 HOH HOH A . D 3 HOH 37 2037 2037 HOH HOH A . D 3 HOH 38 2038 2038 HOH HOH A . D 3 HOH 39 2039 2039 HOH HOH A . D 3 HOH 40 2040 2040 HOH HOH A . D 3 HOH 41 2041 2041 HOH HOH A . D 3 HOH 42 2042 2042 HOH HOH A . D 3 HOH 43 2043 2043 HOH HOH A . D 3 HOH 44 2044 2044 HOH HOH A . D 3 HOH 45 2045 2045 HOH HOH A . D 3 HOH 46 2046 2046 HOH HOH A . D 3 HOH 47 2047 2047 HOH HOH A . D 3 HOH 48 2048 2048 HOH HOH A . D 3 HOH 49 2049 2049 HOH HOH A . D 3 HOH 50 2050 2050 HOH HOH A . D 3 HOH 51 2051 2051 HOH HOH A . D 3 HOH 52 2052 2052 HOH HOH A . D 3 HOH 53 2053 2053 HOH HOH A . D 3 HOH 54 2054 2054 HOH HOH A . D 3 HOH 55 2055 2055 HOH HOH A . D 3 HOH 56 2056 2056 HOH HOH A . D 3 HOH 57 2057 2057 HOH HOH A . D 3 HOH 58 2058 2058 HOH HOH A . D 3 HOH 59 2059 2059 HOH HOH A . D 3 HOH 60 2060 2060 HOH HOH A . D 3 HOH 61 2061 2061 HOH HOH A . D 3 HOH 62 2062 2062 HOH HOH A . D 3 HOH 63 2063 2063 HOH HOH A . D 3 HOH 64 2064 2064 HOH HOH A . D 3 HOH 65 2065 2065 HOH HOH A . D 3 HOH 66 2066 2066 HOH HOH A . D 3 HOH 67 2067 2067 HOH HOH A . D 3 HOH 68 2068 2068 HOH HOH A . D 3 HOH 69 2069 2069 HOH HOH A . D 3 HOH 70 2070 2070 HOH HOH A . D 3 HOH 71 2071 2071 HOH HOH A . D 3 HOH 72 2072 2072 HOH HOH A . D 3 HOH 73 2073 2073 HOH HOH A . D 3 HOH 74 2074 2074 HOH HOH A . D 3 HOH 75 2075 2075 HOH HOH A . D 3 HOH 76 2076 2076 HOH HOH A . D 3 HOH 77 2077 2077 HOH HOH A . D 3 HOH 78 2078 2078 HOH HOH A . D 3 HOH 79 2079 2079 HOH HOH A . D 3 HOH 80 2080 2080 HOH HOH A . D 3 HOH 81 2081 2081 HOH HOH A . D 3 HOH 82 2082 2082 HOH HOH A . D 3 HOH 83 2083 2083 HOH HOH A . D 3 HOH 84 2084 2084 HOH HOH A . D 3 HOH 85 2085 2085 HOH HOH A . D 3 HOH 86 2086 2086 HOH HOH A . D 3 HOH 87 2087 2087 HOH HOH A . D 3 HOH 88 2088 2088 HOH HOH A . D 3 HOH 89 2089 2089 HOH HOH A . D 3 HOH 90 2090 2090 HOH HOH A . D 3 HOH 91 2091 2091 HOH HOH A . D 3 HOH 92 2092 2092 HOH HOH A . D 3 HOH 93 2093 2093 HOH HOH A . D 3 HOH 94 2094 2094 HOH HOH A . D 3 HOH 95 2095 2095 HOH HOH A . D 3 HOH 96 2096 2096 HOH HOH A . D 3 HOH 97 2097 2097 HOH HOH A . D 3 HOH 98 2098 2098 HOH HOH A . D 3 HOH 99 2099 2099 HOH HOH A . D 3 HOH 100 2100 2100 HOH HOH A . D 3 HOH 101 2101 2101 HOH HOH A . D 3 HOH 102 2102 2102 HOH HOH A . D 3 HOH 103 2103 2103 HOH HOH A . D 3 HOH 104 2104 2104 HOH HOH A . D 3 HOH 105 2105 2105 HOH HOH A . D 3 HOH 106 2106 2106 HOH HOH A . D 3 HOH 107 2107 2107 HOH HOH A . D 3 HOH 108 2108 2108 HOH HOH A . D 3 HOH 109 2109 2109 HOH HOH A . D 3 HOH 110 2110 2110 HOH HOH A . D 3 HOH 111 2111 2111 HOH HOH A . D 3 HOH 112 2112 2112 HOH HOH A . D 3 HOH 113 2113 2113 HOH HOH A . D 3 HOH 114 2114 2114 HOH HOH A . D 3 HOH 115 2115 2115 HOH HOH A . D 3 HOH 116 2116 2116 HOH HOH A . D 3 HOH 117 2117 2117 HOH HOH A . D 3 HOH 118 2118 2118 HOH HOH A . D 3 HOH 119 2119 2119 HOH HOH A . D 3 HOH 120 2120 2120 HOH HOH A . D 3 HOH 121 2121 2121 HOH HOH A . D 3 HOH 122 2122 2122 HOH HOH A . D 3 HOH 123 2123 2123 HOH HOH A . D 3 HOH 124 2124 2124 HOH HOH A . D 3 HOH 125 2125 2125 HOH HOH A . D 3 HOH 126 2126 2126 HOH HOH A . D 3 HOH 127 2127 2127 HOH HOH A . D 3 HOH 128 2128 2128 HOH HOH A . D 3 HOH 129 2129 2129 HOH HOH A . D 3 HOH 130 2130 2130 HOH HOH A . D 3 HOH 131 2131 2131 HOH HOH A . D 3 HOH 132 2132 2132 HOH HOH A . D 3 HOH 133 2133 2133 HOH HOH A . D 3 HOH 134 2134 2134 HOH HOH A . D 3 HOH 135 2135 2135 HOH HOH A . D 3 HOH 136 2136 2136 HOH HOH A . D 3 HOH 137 2137 2137 HOH HOH A . D 3 HOH 138 2138 2138 HOH HOH A . D 3 HOH 139 2139 2139 HOH HOH A . D 3 HOH 140 2140 2140 HOH HOH A . D 3 HOH 141 2141 2141 HOH HOH A . D 3 HOH 142 2142 2142 HOH HOH A . D 3 HOH 143 2143 2143 HOH HOH A . D 3 HOH 144 2144 2144 HOH HOH A . D 3 HOH 145 2145 2145 HOH HOH A . D 3 HOH 146 2146 2146 HOH HOH A . D 3 HOH 147 2147 2147 HOH HOH A . D 3 HOH 148 2148 2148 HOH HOH A . D 3 HOH 149 2149 2149 HOH HOH A . D 3 HOH 150 2150 2150 HOH HOH A . D 3 HOH 151 2151 2151 HOH HOH A . D 3 HOH 152 2152 2152 HOH HOH A . D 3 HOH 153 2153 2153 HOH HOH A . D 3 HOH 154 2154 2154 HOH HOH A . D 3 HOH 155 2155 2155 HOH HOH A . D 3 HOH 156 2156 2156 HOH HOH A . D 3 HOH 157 2157 2157 HOH HOH A . D 3 HOH 158 2158 2158 HOH HOH A . D 3 HOH 159 2159 2159 HOH HOH A . D 3 HOH 160 2160 2160 HOH HOH A . D 3 HOH 161 2161 2161 HOH HOH A . D 3 HOH 162 2162 2162 HOH HOH A . D 3 HOH 163 2163 2163 HOH HOH A . D 3 HOH 164 2164 2164 HOH HOH A . D 3 HOH 165 2165 2165 HOH HOH A . D 3 HOH 166 2166 2166 HOH HOH A . D 3 HOH 167 2167 2167 HOH HOH A . D 3 HOH 168 2168 2168 HOH HOH A . D 3 HOH 169 2169 2169 HOH HOH A . D 3 HOH 170 2170 2170 HOH HOH A . D 3 HOH 171 2171 2171 HOH HOH A . D 3 HOH 172 2172 2172 HOH HOH A . D 3 HOH 173 2173 2173 HOH HOH A . D 3 HOH 174 2174 2174 HOH HOH A . D 3 HOH 175 2175 2175 HOH HOH A . D 3 HOH 176 2176 2176 HOH HOH A . D 3 HOH 177 2177 2177 HOH HOH A . D 3 HOH 178 2178 2178 HOH HOH A . D 3 HOH 179 2179 2179 HOH HOH A . D 3 HOH 180 2180 2180 HOH HOH A . D 3 HOH 181 2181 2181 HOH HOH A . D 3 HOH 182 2182 2182 HOH HOH A . D 3 HOH 183 2183 2183 HOH HOH A . D 3 HOH 184 2184 2184 HOH HOH A . D 3 HOH 185 2185 2185 HOH HOH A . D 3 HOH 186 2186 2186 HOH HOH A . D 3 HOH 187 2187 2187 HOH HOH A . D 3 HOH 188 2188 2188 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id OCS _pdbx_struct_mod_residue.label_seq_id 197 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id OCS _pdbx_struct_mod_residue.auth_seq_id 221 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id CYS _pdbx_struct_mod_residue.details 'CYSTEINESULFONIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A OCS 197 ? A OCS 221 ? 1_555 ZN ? C ZN . ? A ZN 1293 ? 1_555 OD1 ? A OCS 197 ? A OCS 221 ? 1_555 33.2 ? 2 SG ? A OCS 197 ? A OCS 221 ? 1_555 ZN ? C ZN . ? A ZN 1293 ? 1_555 O ? D HOH . ? A HOH 2188 ? 1_555 122.9 ? 3 OD1 ? A OCS 197 ? A OCS 221 ? 1_555 ZN ? C ZN . ? A ZN 1293 ? 1_555 O ? D HOH . ? A HOH 2188 ? 1_555 111.7 ? 4 SG ? A OCS 197 ? A OCS 221 ? 1_555 ZN ? C ZN . ? A ZN 1293 ? 1_555 NE2 ? A HIS 239 ? A HIS 263 ? 1_555 99.7 ? 5 OD1 ? A OCS 197 ? A OCS 221 ? 1_555 ZN ? C ZN . ? A ZN 1293 ? 1_555 NE2 ? A HIS 239 ? A HIS 263 ? 1_555 107.4 ? 6 O ? D HOH . ? A HOH 2188 ? 1_555 ZN ? C ZN . ? A ZN 1293 ? 1_555 NE2 ? A HIS 239 ? A HIS 263 ? 1_555 137.0 ? 7 SG ? A OCS 197 ? A OCS 221 ? 1_555 ZN ? C ZN . ? A ZN 1293 ? 1_555 OD2 ? A ASP 117 ? A ASP 120 ? 1_555 127.8 ? 8 OD1 ? A OCS 197 ? A OCS 221 ? 1_555 ZN ? C ZN . ? A ZN 1293 ? 1_555 OD2 ? A ASP 117 ? A ASP 120 ? 1_555 97.0 ? 9 O ? D HOH . ? A HOH 2188 ? 1_555 ZN ? C ZN . ? A ZN 1293 ? 1_555 OD2 ? A ASP 117 ? A ASP 120 ? 1_555 80.2 ? 10 NE2 ? A HIS 239 ? A HIS 263 ? 1_555 ZN ? C ZN . ? A ZN 1293 ? 1_555 OD2 ? A ASP 117 ? A ASP 120 ? 1_555 77.9 ? 11 NE2 ? A HIS 113 ? A HIS 116 ? 1_555 ZN ? B ZN . ? A ZN 1292 ? 1_555 NE2 ? A HIS 178 ? A HIS 196 ? 1_555 100.1 ? 12 NE2 ? A HIS 113 ? A HIS 116 ? 1_555 ZN ? B ZN . ? A ZN 1292 ? 1_555 O ? D HOH . ? A HOH 2187 ? 1_555 172.9 ? 13 NE2 ? A HIS 178 ? A HIS 196 ? 1_555 ZN ? B ZN . ? A ZN 1292 ? 1_555 O ? D HOH . ? A HOH 2187 ? 1_555 86.6 ? 14 NE2 ? A HIS 113 ? A HIS 116 ? 1_555 ZN ? B ZN . ? A ZN 1292 ? 1_555 O ? D HOH . ? A HOH 2188 ? 1_555 100.7 ? 15 NE2 ? A HIS 178 ? A HIS 196 ? 1_555 ZN ? B ZN . ? A ZN 1292 ? 1_555 O ? D HOH . ? A HOH 2188 ? 1_555 120.3 ? 16 O ? D HOH . ? A HOH 2187 ? 1_555 ZN ? B ZN . ? A ZN 1292 ? 1_555 O ? D HOH . ? A HOH 2188 ? 1_555 73.7 ? 17 NE2 ? A HIS 113 ? A HIS 116 ? 1_555 ZN ? B ZN . ? A ZN 1292 ? 1_555 ND1 ? A HIS 115 ? A HIS 118 ? 1_555 97.4 ? 18 NE2 ? A HIS 178 ? A HIS 196 ? 1_555 ZN ? B ZN . ? A ZN 1292 ? 1_555 ND1 ? A HIS 115 ? A HIS 118 ? 1_555 109.5 ? 19 O ? D HOH . ? A HOH 2187 ? 1_555 ZN ? B ZN . ? A ZN 1292 ? 1_555 ND1 ? A HIS 115 ? A HIS 118 ? 1_555 82.4 ? 20 O ? D HOH . ? A HOH 2188 ? 1_555 ZN ? B ZN . ? A ZN 1292 ? 1_555 ND1 ? A HIS 115 ? A HIS 118 ? 1_555 122.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-15 2 'Structure model' 1 1 2011-08-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0102 ? 1 XDS 'data reduction' . ? 2 XDS 'data scaling' . ? 3 # _pdbx_entry_details.entry_id 2Y8B _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE SEQUENCE IS NUMBERED ACCORDING TO THE BBL NUMBERING SCHEME (REFERENCE GARAU, G., GARCIA-SAEZ, I., BEBRONE, C., ANNE, C., MERCURI, P., GALLENI,M., FRERE, J. M. & DIDEBERG, O. (2004). UPDATE OF THE STANDARD NUMBERING SCHEME FOR CLASS B B-LACTAMASES. ANTIMICROB. AGENTS CHEMOTHER. 48, 2347-9.) ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2078 ? ? O A HOH 2104 ? ? 1.92 2 1 O A HOH 2164 ? ? O A HOH 2165 ? ? 2.03 3 1 NE2 A GLN 103 ? A O A HOH 2068 ? ? 2.07 4 1 O A HOH 2122 ? ? O A HOH 2123 ? ? 2.08 5 1 O A HOH 2104 ? ? O A HOH 2105 ? ? 2.12 6 1 O A HOH 2077 ? ? O A HOH 2104 ? ? 2.14 7 1 O A HOH 2134 ? ? O A HOH 2137 ? ? 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A THR 64 ? ? N A VAL 66 ? ? 1.624 1.336 0.288 0.023 Y 2 1 CG A LYS 173 ? ? CD A LYS 173 ? ? 1.278 1.520 -0.242 0.034 N 3 1 C A VAL 205 ? ? N A PRO 209 ? ? 1.474 1.338 0.136 0.019 Y 4 1 CG A LYS 247 ? ? CD A LYS 247 ? ? 0.823 1.520 -0.697 0.034 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 50 ? ? CG A ASP 50 ? ? OD2 A ASP 50 ? ? 126.48 118.30 8.18 0.90 N 2 1 O A ALA 131 ? ? C A ALA 131 ? ? N A GLY 133 ? ? 110.26 123.20 -12.94 1.70 Y 3 1 O A GLY 150 ? ? C A GLY 150 ? ? N A ASN 165 ? ? 112.09 122.70 -10.61 1.60 Y 4 1 CB A LYS 173 ? ? CG A LYS 173 ? ? CD A LYS 173 ? ? 136.87 111.60 25.27 2.60 N 5 1 CG1 A VAL 189 ? ? CB A VAL 189 ? ? CG2 A VAL 189 ? ? 122.13 110.90 11.23 1.60 N 6 1 CB A LYS 247 ? ? CG A LYS 247 ? ? CD A LYS 247 ? ? 134.15 111.60 22.55 2.60 N 7 1 CG A LYS 247 ? ? CD A LYS 247 ? ? CE A LYS 247 ? ? 142.76 111.90 30.86 3.00 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 77 ? ? 52.03 -119.69 2 1 ASP A 84 ? ? 70.97 150.21 3 1 TRP A 87 ? ? 69.50 73.18 4 1 SER A 178 ? ? -35.50 127.33 5 1 ALA A 195 ? ? -159.39 -102.48 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id ALA _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 131 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle 11.27 # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 C _pdbx_validate_polymer_linkage.auth_asym_id_1 A _pdbx_validate_polymer_linkage.auth_comp_id_1 THR _pdbx_validate_polymer_linkage.auth_seq_id_1 64 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 N _pdbx_validate_polymer_linkage.auth_asym_id_2 A _pdbx_validate_polymer_linkage.auth_comp_id_2 VAL _pdbx_validate_polymer_linkage.auth_seq_id_2 66 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 1.62 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2015 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.20 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A ASP 50 ? OD2 ? A ASP 50 OD2 2 1 Y 0 A LYS 173 ? CD ? A LYS 155 CD 3 1 Y 0 A LYS 173 ? CE ? A LYS 155 CE 4 1 Y 0 A LYS 173 ? NZ ? A LYS 155 NZ 5 1 Y 0 A LYS 247 ? CD ? A LYS 223 CD 6 1 Y 0 A LYS 247 ? CE ? A LYS 223 CE 7 1 Y 0 A LYS 247 ? NZ ? A LYS 223 NZ 8 1 Y 0 A LYS 291 ? CB ? A LYS 256 CB 9 1 Y 0 A LYS 291 ? CG ? A LYS 256 CG 10 1 Y 0 A LYS 291 ? CD ? A LYS 256 CD 11 1 Y 0 A LYS 291 ? CE ? A LYS 256 CE 12 1 Y 0 A LYS 291 ? NZ ? A LYS 256 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? A MET 1 2 1 Y 1 A PHE 1 ? A PHE 2 3 1 Y 1 A GLN 2 ? A GLN 3 4 1 Y 1 A ILE 3 ? A ILE 4 5 1 Y 1 A ARG 4 ? A ARG 5 6 1 Y 1 A SER 5 ? A SER 6 7 1 Y 1 A PHE 6 ? A PHE 7 8 1 Y 1 A LEU 7 ? A LEU 8 9 1 Y 1 A VAL 8 ? A VAL 9 10 1 Y 1 A GLY 9 ? A GLY 10 11 1 Y 1 A ILE 10 ? A ILE 11 12 1 Y 1 A SER 11 ? A SER 12 13 1 Y 1 A ALA 12 ? A ALA 13 14 1 Y 1 A PHE 13 ? A PHE 14 15 1 Y 1 A VAL 14 ? A VAL 15 16 1 Y 1 A MET 15 ? A MET 16 17 1 Y 1 A ALA 16 ? A ALA 17 18 1 Y 1 A VAL 17 ? A VAL 18 19 1 Y 1 A LEU 18 ? A LEU 19 20 1 Y 1 A GLY 19 ? A GLY 20 21 1 Y 1 A SER 20 ? A SER 21 22 1 Y 1 A ALA 21 ? A ALA 22 23 1 Y 1 A ALA 22 ? A ALA 23 24 1 Y 1 A TYR 23 ? A TYR 24 25 1 Y 1 A SER 24 ? A SER 25 26 1 Y 1 A ALA 25 ? A ALA 26 27 1 Y 1 A GLN 26 ? A GLN 27 28 1 Y 1 A PRO 27 ? A PRO 28 29 1 Y 1 A GLY 28 ? A GLY 29 30 1 Y 1 A GLY 29 ? A GLY 30 31 1 Y 1 A THR 292 ? A THR 257 32 1 Y 1 A HIS 293 ? A HIS 258 33 1 Y 1 A LYS 294 ? A LYS 259 34 1 Y 1 A VAL 295 ? A VAL 260 35 1 Y 1 A ARG 296 ? A ARG 261 36 1 Y 1 A PRO 297 ? A PRO 262 37 1 Y 1 A VAL 298 ? A VAL 263 38 1 Y 1 A ALA 299 ? A ALA 264 39 1 Y 1 A GLU 300 ? A GLU 265 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 water HOH #