HEADER TRANSFERASE 07-FEB-11 2Y8H TITLE STRUCTURE OF THE FIRST GAF DOMAIN E87G MUTANT OF MYCOBACTERIUM TITLE 2 TUBERCULOSIS DOSS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TWO COMPONENT SENSOR HISTIDINE KINASE DEVS; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GAF DOMAIN, RESIDUES 63-210; COMPND 5 SYNONYM: TWO COMPONENT SENSOR HISTIDINE KINASE DOSS; COMPND 6 EC: 2.7.3.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: D63 TO K210 OF DOSS WITH ADDITIONAL GAMDP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.Y.CHO,H.J.CHO,B.S.KANG REVDAT 3 20-DEC-23 2Y8H 1 REMARK LINK REVDAT 2 22-JUN-11 2Y8H 1 JRNL REVDAT 1 23-FEB-11 2Y8H 0 JRNL AUTH H.Y.CHO,H.J.CHO,M.H.KIM,B.S.KANG JRNL TITL BLOCKAGE OF THE CHANNEL TO HEME BY THE E87 SIDE CHAIN IN THE JRNL TITL 2 GAF DOMAIN OF MYCOBACTERIUM TUBERCULOSIS DOSS CONFERS THE JRNL TITL 3 UNIQUE SENSITIVITY OF DOSS TO OXYGEN. JRNL REF FEBS LETT. V. 585 1873 2011 JRNL REFN ISSN 0014-5793 JRNL PMID 21536032 JRNL DOI 10.1016/J.FEBSLET.2011.04.050 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 24411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1313 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1560 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2277 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 87 REMARK 3 SOLVENT ATOMS : 308 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.182 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.635 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2471 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3404 ; 1.428 ; 2.077 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 308 ; 5.495 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;36.655 ;22.736 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 361 ;12.160 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;13.055 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 369 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1929 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1510 ; 0.817 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2437 ; 1.415 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 961 ; 2.003 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 962 ; 3.152 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2Y8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1290047215. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 294 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25905 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2W3D REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 17% PEG REMARK 280 3350, 200 MM CALCIUM ACETATE, 100 MM TRIS-HCL, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.37000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.22950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.38200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.22950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.37000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.38200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 210 REMARK 465 GLY B 58 REMARK 465 ALA B 59 REMARK 465 GLN B 208 REMARK 465 ALA B 209 REMARK 465 LYS B 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 91 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 92 OE1 NE2 REMARK 470 GLU A 106 OE2 REMARK 470 ARG A 163 CZ NH1 NH2 REMARK 470 MET B 60 CG SD CE REMARK 470 ARG B 94 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 106 OE1 OE2 REMARK 470 GLU B 126 CD OE1 OE2 REMARK 470 LYS B 129 CE NZ REMARK 470 GLN B 207 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 186 CD GLU A 186 OE1 -0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 148 -13.97 82.35 REMARK 500 ARG A 163 -120.49 57.31 REMARK 500 HIS B 93 9.85 101.30 REMARK 500 TYR B 148 -2.25 82.88 REMARK 500 ARG B 153 -65.07 -123.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2063 DISTANCE = 5.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 149 NE2 REMARK 620 2 HEM A 500 NA 94.2 REMARK 620 3 HEM A 500 NB 92.0 89.2 REMARK 620 4 HEM A 500 NC 89.4 175.7 92.9 REMARK 620 5 HEM A 500 ND 90.2 89.0 177.3 88.6 REMARK 620 6 HOH A2166 O 174.1 87.7 93.6 88.5 84.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1210 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 183 OD1 REMARK 620 2 ASP A 183 OD2 47.5 REMARK 620 3 HOH A2023 O 135.5 93.2 REMARK 620 4 HOH A2024 O 73.9 74.6 75.9 REMARK 620 5 HOH A2086 O 82.0 129.4 130.3 90.7 REMARK 620 6 HOH A2138 O 72.0 87.7 136.0 145.2 77.5 REMARK 620 7 HOH A2142 O 105.1 68.4 68.8 126.2 143.1 70.8 REMARK 620 8 HOH B2125 O 148.1 152.2 76.3 125.7 73.7 82.7 83.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 149 NE2 REMARK 620 2 HEM B 502 NA 90.0 REMARK 620 3 HEM B 502 NB 91.4 90.6 REMARK 620 4 HEM B 502 NC 93.4 176.4 88.1 REMARK 620 5 HEM B 502 ND 93.8 90.1 174.8 90.9 REMARK 620 6 HOH B2142 O 177.5 89.1 86.3 87.5 88.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1210 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W3D RELATED DB: PDB REMARK 900 STRUCTURE OF THE FIRST GAF DOMAIN OF MYCOBACTERIUM TUBERCULOSIS DOSS REMARK 999 REMARK 999 SEQUENCE REMARK 999 D63 TO K210 OF DOSS WITH ADDITIONAL GAMDP SEQUENCE AT THE REMARK 999 N-TERMINUS DUE TO CLONING PROCEDURE DBREF 2Y8H A 63 210 UNP A5U7E7 A5U7E7_MYCTA 63 210 DBREF 2Y8H B 63 210 UNP A5U7E7 A5U7E7_MYCTA 63 210 SEQADV 2Y8H GLY A 58 UNP A5U7E7 EXPRESSION TAG SEQADV 2Y8H ALA A 59 UNP A5U7E7 EXPRESSION TAG SEQADV 2Y8H MET A 60 UNP A5U7E7 EXPRESSION TAG SEQADV 2Y8H ASP A 61 UNP A5U7E7 EXPRESSION TAG SEQADV 2Y8H PRO A 62 UNP A5U7E7 EXPRESSION TAG SEQADV 2Y8H GLY A 87 UNP A5U7E7 GLU 87 ENGINEERED MUTATION SEQADV 2Y8H GLY B 58 UNP A5U7E7 EXPRESSION TAG SEQADV 2Y8H ALA B 59 UNP A5U7E7 EXPRESSION TAG SEQADV 2Y8H MET B 60 UNP A5U7E7 EXPRESSION TAG SEQADV 2Y8H ASP B 61 UNP A5U7E7 EXPRESSION TAG SEQADV 2Y8H PRO B 62 UNP A5U7E7 EXPRESSION TAG SEQADV 2Y8H GLY B 87 UNP A5U7E7 GLU 87 ENGINEERED MUTATION SEQRES 1 A 153 GLY ALA MET ASP PRO ASP LEU GLU ALA THR LEU ARG ALA SEQRES 2 A 153 ILE VAL HIS SER ALA THR SER LEU VAL ASP ALA ARG TYR SEQRES 3 A 153 GLY ALA MET GLY VAL HIS ASP ARG GLN HIS ARG VAL LEU SEQRES 4 A 153 HIS PHE VAL TYR GLU GLY ILE ASP GLU GLU THR VAL ARG SEQRES 5 A 153 ARG ILE GLY HIS LEU PRO LYS GLY LEU GLY VAL ILE GLY SEQRES 6 A 153 LEU LEU ILE GLU ASP PRO LYS PRO LEU ARG LEU ASP ASP SEQRES 7 A 153 VAL SER ALA HIS PRO ALA SER ILE GLY PHE PRO PRO TYR SEQRES 8 A 153 HIS PRO PRO MET ARG THR PHE LEU GLY VAL PRO VAL ARG SEQRES 9 A 153 VAL ARG ASP GLU SER PHE GLY THR LEU TYR LEU THR ASP SEQRES 10 A 153 LYS THR ASN GLY GLN PRO PHE SER ASP ASP ASP GLU VAL SEQRES 11 A 153 LEU VAL GLN ALA LEU ALA ALA ALA ALA GLY ILE ALA VAL SEQRES 12 A 153 ALA ASN ALA ARG LEU TYR GLN GLN ALA LYS SEQRES 1 B 153 GLY ALA MET ASP PRO ASP LEU GLU ALA THR LEU ARG ALA SEQRES 2 B 153 ILE VAL HIS SER ALA THR SER LEU VAL ASP ALA ARG TYR SEQRES 3 B 153 GLY ALA MET GLY VAL HIS ASP ARG GLN HIS ARG VAL LEU SEQRES 4 B 153 HIS PHE VAL TYR GLU GLY ILE ASP GLU GLU THR VAL ARG SEQRES 5 B 153 ARG ILE GLY HIS LEU PRO LYS GLY LEU GLY VAL ILE GLY SEQRES 6 B 153 LEU LEU ILE GLU ASP PRO LYS PRO LEU ARG LEU ASP ASP SEQRES 7 B 153 VAL SER ALA HIS PRO ALA SER ILE GLY PHE PRO PRO TYR SEQRES 8 B 153 HIS PRO PRO MET ARG THR PHE LEU GLY VAL PRO VAL ARG SEQRES 9 B 153 VAL ARG ASP GLU SER PHE GLY THR LEU TYR LEU THR ASP SEQRES 10 B 153 LYS THR ASN GLY GLN PRO PHE SER ASP ASP ASP GLU VAL SEQRES 11 B 153 LEU VAL GLN ALA LEU ALA ALA ALA ALA GLY ILE ALA VAL SEQRES 12 B 153 ALA ASN ALA ARG LEU TYR GLN GLN ALA LYS HET HEM A 500 43 HET CA A1210 1 HET HEM B 502 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CA CALCIUM ION HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 CA CA 2+ FORMUL 6 HOH *308(H2 O) HELIX 1 1 ASP A 61 VAL A 79 1 19 HELIX 2 2 ASP A 104 GLY A 112 1 9 HELIX 3 3 GLY A 119 ASP A 127 1 9 HELIX 4 4 ASP A 135 HIS A 139 5 5 HELIX 5 5 SER A 182 ALA A 203 1 22 HELIX 6 6 ASP B 61 ASP B 80 1 20 HELIX 7 7 ASP B 104 GLY B 112 1 9 HELIX 8 8 LEU B 118 ASP B 127 1 10 HELIX 9 9 ASP B 135 HIS B 139 5 5 HELIX 10 10 ASN B 177 GLN B 179 5 3 HELIX 11 11 SER B 182 LEU B 205 1 24 SHEET 1 AA 5 VAL A 95 GLU A 101 0 SHEET 2 AA 5 ALA A 81 HIS A 89 -1 O GLY A 84 N GLU A 101 SHEET 3 AA 5 GLU A 165 LYS A 175 -1 O PHE A 167 N HIS A 89 SHEET 4 AA 5 PHE A 155 VAL A 162 -1 O LEU A 156 N LEU A 172 SHEET 5 AA 5 LEU A 131 LEU A 133 -1 O LEU A 131 N GLY A 157 SHEET 1 BA 5 VAL B 95 GLU B 101 0 SHEET 2 BA 5 ALA B 81 HIS B 89 -1 O GLY B 84 N GLU B 101 SHEET 3 BA 5 GLU B 165 LYS B 175 -1 O PHE B 167 N HIS B 89 SHEET 4 BA 5 PHE B 155 VAL B 162 -1 O LEU B 156 N LEU B 172 SHEET 5 BA 5 LEU B 131 LEU B 133 -1 O LEU B 131 N GLY B 157 LINK NE2 HIS A 149 FE HEM A 500 1555 1555 2.22 LINK OD1 ASP A 183 CA CA A1210 1555 1555 2.47 LINK OD2 ASP A 183 CA CA A1210 1555 1555 2.78 LINK FE HEM A 500 O HOH A2166 1555 1555 2.27 LINK CA CA A1210 O HOH A2023 1555 4545 2.56 LINK CA CA A1210 O HOH A2024 1555 4545 1.98 LINK CA CA A1210 O HOH A2086 1555 1555 2.34 LINK CA CA A1210 O HOH A2138 1555 1555 2.62 LINK CA CA A1210 O HOH A2142 1555 1555 2.49 LINK CA CA A1210 O HOH B2125 1555 4545 2.37 LINK NE2 HIS B 149 FE HEM B 502 1555 1555 2.41 LINK FE HEM B 502 O HOH B2142 1555 1555 2.50 SITE 1 AC1 23 GLY A 84 PHE A 98 GLU A 101 ILE A 103 SITE 2 AC1 23 ILE A 111 HIS A 113 LEU A 114 PRO A 115 SITE 3 AC1 23 LYS A 116 GLY A 117 LEU A 118 GLY A 119 SITE 4 AC1 23 VAL A 120 SER A 142 ILE A 143 GLY A 144 SITE 5 AC1 23 PRO A 146 HIS A 149 MET A 152 THR A 173 SITE 6 AC1 23 HOH A2164 HOH A2165 HOH A2166 SITE 1 AC2 23 GLY B 84 TYR B 100 GLU B 101 ILE B 103 SITE 2 AC2 23 ILE B 111 HIS B 113 LEU B 114 PRO B 115 SITE 3 AC2 23 LYS B 116 GLY B 117 LEU B 118 GLY B 119 SITE 4 AC2 23 VAL B 120 SER B 142 ILE B 143 GLY B 144 SITE 5 AC2 23 PRO B 146 HIS B 149 MET B 152 THR B 173 SITE 6 AC2 23 HOH B2078 HOH B2141 HOH B2142 SITE 1 AC3 7 ASP A 183 HOH A2023 HOH A2024 HOH A2086 SITE 2 AC3 7 HOH A2138 HOH A2142 HOH B2125 CRYST1 36.740 86.764 100.459 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027218 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011526 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009954 0.00000