HEADER OXIDOREDUCTASE 11-FEB-11 2Y93 TITLE CRYSTAL STRUCTURE OF CIS-BIPHENYL-2,3-DIHYDRODIOL-2,3-DEHYDROGENASE TITLE 2 (BPHB)FROM PANDORAEA PNOMENUSA STRAIN B-356. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CIS-2,3-DIHYDROBIPHENYL-2,3-DIOL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2\,3-DIHYDRO-2\,3-DIHYDROXYBIPHENYL DEHYDROGENASE, 2\,3- COMPND 5 DIHYDROXY-4-PHENYLHEXA-4\,6-DIENE DEHYDROGENASE, B2\,3D, BIPHENYL-2\, COMPND 6 3-DIHYDRO-2\,3-DIOL DEHYDROGENASE, BIPHENYL-CIS-DIOL DEHYDROGENASE; COMPND 7 EC: 1.3.1.56; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COMAMONAS TESTOSTERONI; SOURCE 3 ORGANISM_TAXID: 285; SOURCE 4 STRAIN: B-356; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET14B KEYWDS OXIDOREDUCTASE, SHORT CHAIN DEHYDROGENASE, SDR EXPDTA X-RAY DIFFRACTION AUTHOR S.DHINDWAL,D.N.PATIL,P.KUMAR REVDAT 3 20-DEC-23 2Y93 1 REMARK REVDAT 2 26-OCT-11 2Y93 1 JRNL REVDAT 1 31-AUG-11 2Y93 0 JRNL AUTH S.DHINDWAL,D.N.PATIL,M.MOHAMMADI,M.SYLVESTRE,S.TOMAR,P.KUMAR JRNL TITL BIOCHEMICAL STUDIES AND LIGAND-BOUND STRUCTURES OF BIPHENYL JRNL TITL 2 DEHYDROGENASE FROM PANDORAEA PNOMENUSA STRAIN B-356 REVEAL A JRNL TITL 3 BASIS FOR BROAD SPECIFICITY OF THE ENZYME. JRNL REF J.BIOL.CHEM. V. 286 37011 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21880718 JRNL DOI 10.1074/JBC.M111.291013 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.N.PATIL,S.TOMAR,M.SYLVESTRE,P.KUMAR REMARK 1 TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 CRYSTALLOGRAPHIC STUDIES OF CIS-BIPHENYL-2,3-DIHYDRODIOL REMARK 1 TITL 3 -2,3-DEHYDROGENASE FROM PANDORAEA PNOMENUSA B-356. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 66 1517 2010 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 21045310 REMARK 1 DOI 10.1107/S1744309110036894 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 24478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1320 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1523 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3926 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : 0.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.296 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.204 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.471 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3996 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5420 ; 1.181 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 532 ; 5.489 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;38.010 ;23.117 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 620 ;15.725 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;16.113 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 622 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3034 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2013 ; 0.187 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2730 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 235 ; 0.133 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 138 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.224 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2705 ; 0.349 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4178 ; 0.623 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1442 ; 0.953 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1242 ; 1.540 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 186 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5500 13.8169 34.1650 REMARK 3 T TENSOR REMARK 3 T11: -0.0468 T22: -0.0486 REMARK 3 T33: -0.0001 T12: -0.0170 REMARK 3 T13: 0.0279 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 0.3433 L22: 0.4738 REMARK 3 L33: 0.8716 L12: 0.1580 REMARK 3 L13: -0.1086 L23: -0.3481 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: 0.0037 S13: 0.0600 REMARK 3 S21: -0.0387 S22: -0.0359 S23: -0.0833 REMARK 3 S31: -0.0613 S32: 0.0961 S33: 0.0085 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 187 A 197 REMARK 3 ORIGIN FOR THE GROUP (A): 27.9646 4.3531 39.2828 REMARK 3 T TENSOR REMARK 3 T11: 0.0575 T22: 0.0854 REMARK 3 T33: 0.1347 T12: 0.0729 REMARK 3 T13: 0.1229 T23: 0.2014 REMARK 3 L TENSOR REMARK 3 L11: 15.3118 L22: 14.7895 REMARK 3 L33: 36.6172 L12: 9.3785 REMARK 3 L13: 13.3428 L23: 23.2071 REMARK 3 S TENSOR REMARK 3 S11: -1.1093 S12: 1.3439 S13: -0.2750 REMARK 3 S21: -0.9511 S22: 0.7115 S23: -0.2411 REMARK 3 S31: -0.1465 S32: 3.2317 S33: 0.3978 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 207 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1975 -12.1885 34.3747 REMARK 3 T TENSOR REMARK 3 T11: -0.1278 T22: 0.0154 REMARK 3 T33: 0.1696 T12: -0.0003 REMARK 3 T13: 0.0988 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 5.2304 L22: 16.3239 REMARK 3 L33: 8.0358 L12: -2.4420 REMARK 3 L13: -2.4959 L23: -9.0293 REMARK 3 S TENSOR REMARK 3 S11: -0.4823 S12: -0.1160 S13: 0.2843 REMARK 3 S21: 0.2115 S22: -0.1627 S23: -1.7256 REMARK 3 S31: -0.1806 S32: 1.2306 S33: 0.6450 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 224 A 275 REMARK 3 ORIGIN FOR THE GROUP (A): 8.8130 -5.6665 29.4820 REMARK 3 T TENSOR REMARK 3 T11: -0.0655 T22: -0.0505 REMARK 3 T33: -0.0298 T12: -0.0051 REMARK 3 T13: 0.0325 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.0727 L22: 2.3382 REMARK 3 L33: 0.7848 L12: -0.2992 REMARK 3 L13: 0.1327 L23: -0.6925 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: 0.1537 S13: -0.0695 REMARK 3 S21: -0.1636 S22: -0.0418 S23: -0.1734 REMARK 3 S31: 0.0556 S32: -0.0035 S33: 0.0356 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 186 REMARK 3 ORIGIN FOR THE GROUP (A): -8.8118 -10.6524 24.8932 REMARK 3 T TENSOR REMARK 3 T11: -0.0125 T22: -0.0456 REMARK 3 T33: -0.0574 T12: -0.0279 REMARK 3 T13: -0.0006 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.6855 L22: 0.6271 REMARK 3 L33: 1.0938 L12: 0.1028 REMARK 3 L13: -0.3451 L23: -0.1342 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: 0.1125 S13: -0.0618 REMARK 3 S21: -0.1169 S22: 0.0436 S23: 0.0138 REMARK 3 S31: 0.1023 S32: -0.1392 S33: -0.0207 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 187 B 197 REMARK 3 ORIGIN FOR THE GROUP (A): -21.7298 -3.1825 28.6135 REMARK 3 T TENSOR REMARK 3 T11: -0.0479 T22: 0.0974 REMARK 3 T33: 0.0422 T12: -0.0880 REMARK 3 T13: -0.0312 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 10.6699 L22: 15.6875 REMARK 3 L33: 6.0916 L12: 7.9825 REMARK 3 L13: 1.8645 L23: -6.0897 REMARK 3 S TENSOR REMARK 3 S11: -1.0423 S12: 1.4692 S13: 1.2708 REMARK 3 S21: -1.1200 S22: 1.7921 S23: 0.9409 REMARK 3 S31: 0.2658 S32: -1.3363 S33: -0.7498 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 206 B 223 REMARK 3 ORIGIN FOR THE GROUP (A): -14.4839 12.7881 32.8041 REMARK 3 T TENSOR REMARK 3 T11: -0.0597 T22: -0.0395 REMARK 3 T33: -0.0259 T12: 0.0375 REMARK 3 T13: -0.0082 T23: 0.0851 REMARK 3 L TENSOR REMARK 3 L11: 8.6697 L22: 2.9695 REMARK 3 L33: 13.0995 L12: -4.8044 REMARK 3 L13: -1.6715 L23: 2.9072 REMARK 3 S TENSOR REMARK 3 S11: -0.1714 S12: -0.3774 S13: -0.1453 REMARK 3 S21: 0.0175 S22: 0.2837 S23: 0.3935 REMARK 3 S31: 0.3962 S32: -0.5472 S33: -0.1124 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 224 B 275 REMARK 3 ORIGIN FOR THE GROUP (A): -1.0936 8.5811 30.4622 REMARK 3 T TENSOR REMARK 3 T11: -0.0426 T22: -0.0325 REMARK 3 T33: -0.0768 T12: 0.0229 REMARK 3 T13: 0.0123 T23: 0.0494 REMARK 3 L TENSOR REMARK 3 L11: 1.3319 L22: 1.0604 REMARK 3 L33: 0.9206 L12: 0.2505 REMARK 3 L13: -0.6322 L23: -0.1040 REMARK 3 S TENSOR REMARK 3 S11: 0.0485 S12: 0.0754 S13: 0.0323 REMARK 3 S21: -0.0685 S22: 0.0317 S23: -0.0130 REMARK 3 S31: -0.0799 S32: -0.0659 S33: -0.0802 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2Y93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1290047354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR-H REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26076 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 69.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 40.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1BDB REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3-5 M SODIUM FORMATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.43800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.84600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.84600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 132.65700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.84600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.84600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.21900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.84600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.84600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 132.65700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.84600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.84600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.21900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 88.43800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -147.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 88.43800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 199 REMARK 465 SER A 200 REMARK 465 GLU A 201 REMARK 465 GLN A 202 REMARK 465 SER A 203 REMARK 465 ILE A 204 REMARK 465 SER A 205 REMARK 465 ARG A 277 REMARK 465 GLU A 278 REMARK 465 GLY A 279 REMARK 465 GLN A 280 REMARK 465 GLU A 281 REMARK 465 LEU B 199 REMARK 465 SER B 200 REMARK 465 GLU B 201 REMARK 465 GLN B 202 REMARK 465 SER B 203 REMARK 465 ILE B 204 REMARK 465 SER B 205 REMARK 465 ARG B 277 REMARK 465 GLU B 278 REMARK 465 GLY B 279 REMARK 465 GLN B 280 REMARK 465 GLU B 281 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 276 CA C O CB CG OD1 ND2 REMARK 470 ASN B 276 CA C O CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 141 -125.48 -99.65 REMARK 500 SER A 142 163.13 169.95 REMARK 500 PHE A 146 -41.08 -136.55 REMARK 500 TYR A 251 50.67 -144.39 REMARK 500 ASN A 274 60.99 37.16 REMARK 500 ILE A 275 174.22 -59.92 REMARK 500 ILE B 141 -120.43 -100.73 REMARK 500 SER B 142 159.75 164.68 REMARK 500 PHE B 146 -35.54 -140.99 REMARK 500 ASP B 190 77.62 -102.03 REMARK 500 TYR B 251 52.93 -144.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZV5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CIS-BIPHENYL-2,3-DIHYDRODIOL-2, 3- REMARK 900 DEHYDROGENASE (BPHB) FROM PANDORAEA PNOMENUSA STRAIN B -356 COMPLEX REMARK 900 WITH CO-ENZYME NAD AND PRODUCT 2,3- DIHYDROXYBIPHENYL REMARK 900 RELATED ID: 3ZV6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CIS-BIPHENYL-2,3-DIHYDRODIOL-2, 3- REMARK 900 DEHYDROGENASE (BPHB) FROM PANDORAEA PNOMENUSA STRAIN B -356 COMPLEX REMARK 900 WITH CO-ENZYME NAD AND PRODUCT ANALOG 4,4'-DIHYDROXYBIPHENYL REMARK 900 RELATED ID: 2Y99 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CIS-BIPHENYL-2,3-DIHYDRODIOL-2, 3- REMARK 900 DEHYDROGENASE (BPHB)FROM PANDORAEA PNOMENUSA STRAIN B -356 COMPLEX REMARK 900 WITH CO-ENZYME NAD REMARK 900 RELATED ID: 3ZV4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CIS-BIPHENYL-2,3-DIHYDRODIOL-2, 3- REMARK 900 DEHYDROGENASE (BPHB) FROM PANDORAEA PNOMENUSA STRAIN B -356 IN APO REMARK 900 FORM AT 1.8 ANGSTROM REMARK 900 RELATED ID: 3ZV3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CIS-BIPHENYL-2,3-DIHYDRODIOL-2, 3- REMARK 900 DEHYDROGENASE (BPHB)FROM PANDORAEA PNOMENUSA STRAIN B -356 IN REMARK 900 INTERMEDIATE STATE OF SUBSTRATE BINDING LOOP DBREF 2Y93 A 1 281 UNP Q46381 BPHB_COMTE 1 281 DBREF 2Y93 B 1 281 UNP Q46381 BPHB_COMTE 1 281 SEQRES 1 A 281 MET LYS LEU THR GLY GLU VAL ALA LEU ILE THR GLY GLY SEQRES 2 A 281 ALA SER GLY LEU GLY ARG ALA LEU VAL ASP ARG PHE VAL SEQRES 3 A 281 ALA GLU GLY ALA ARG VAL ALA VAL LEU ASP LYS SER ALA SEQRES 4 A 281 GLU ARG LEU ARG GLU LEU GLU VAL ALA HIS GLY GLY ASN SEQRES 5 A 281 ALA VAL GLY VAL VAL GLY ASP VAL ARG SER LEU GLN ASP SEQRES 6 A 281 GLN LYS ARG ALA ALA GLU ARG CYS LEU ALA ALA PHE GLY SEQRES 7 A 281 LYS ILE ASP THR LEU ILE PRO ASN ALA GLY ILE TRP ASP SEQRES 8 A 281 TYR SER THR ALA LEU ALA ASP LEU PRO GLU ASP LYS ILE SEQRES 9 A 281 ASP ALA ALA PHE ASP ASP ILE PHE HIS VAL ASN VAL LYS SEQRES 10 A 281 GLY TYR ILE HIS ALA VAL LYS ALA CYS LEU PRO ALA LEU SEQRES 11 A 281 VAL SER SER ARG GLY SER VAL VAL PHE THR ILE SER ASN SEQRES 12 A 281 ALA GLY PHE TYR PRO ASN GLY GLY GLY PRO LEU TYR THR SEQRES 13 A 281 ALA THR LYS HIS ALA VAL VAL GLY LEU VAL ARG GLN MET SEQRES 14 A 281 ALA PHE GLU LEU ALA PRO HIS VAL ARG VAL ASN GLY VAL SEQRES 15 A 281 ALA PRO GLY GLY MET ASN THR ASP LEU ARG GLY PRO SER SEQRES 16 A 281 SER LEU GLY LEU SER GLU GLN SER ILE SER SER VAL PRO SEQRES 17 A 281 LEU ALA ASP MET LEU LYS SER VAL LEU PRO ILE GLY ARG SEQRES 18 A 281 MET PRO ALA LEU GLU GLU TYR THR GLY ALA TYR VAL PHE SEQRES 19 A 281 PHE ALA THR ARG GLY ASP SER LEU PRO ALA THR GLY ALA SEQRES 20 A 281 LEU LEU ASN TYR ASP GLY GLY MET GLY VAL ARG GLY PHE SEQRES 21 A 281 LEU THR ALA ALA GLY GLY ALA ASP LEU PRO GLU LYS LEU SEQRES 22 A 281 ASN ILE ASN ARG GLU GLY GLN GLU SEQRES 1 B 281 MET LYS LEU THR GLY GLU VAL ALA LEU ILE THR GLY GLY SEQRES 2 B 281 ALA SER GLY LEU GLY ARG ALA LEU VAL ASP ARG PHE VAL SEQRES 3 B 281 ALA GLU GLY ALA ARG VAL ALA VAL LEU ASP LYS SER ALA SEQRES 4 B 281 GLU ARG LEU ARG GLU LEU GLU VAL ALA HIS GLY GLY ASN SEQRES 5 B 281 ALA VAL GLY VAL VAL GLY ASP VAL ARG SER LEU GLN ASP SEQRES 6 B 281 GLN LYS ARG ALA ALA GLU ARG CYS LEU ALA ALA PHE GLY SEQRES 7 B 281 LYS ILE ASP THR LEU ILE PRO ASN ALA GLY ILE TRP ASP SEQRES 8 B 281 TYR SER THR ALA LEU ALA ASP LEU PRO GLU ASP LYS ILE SEQRES 9 B 281 ASP ALA ALA PHE ASP ASP ILE PHE HIS VAL ASN VAL LYS SEQRES 10 B 281 GLY TYR ILE HIS ALA VAL LYS ALA CYS LEU PRO ALA LEU SEQRES 11 B 281 VAL SER SER ARG GLY SER VAL VAL PHE THR ILE SER ASN SEQRES 12 B 281 ALA GLY PHE TYR PRO ASN GLY GLY GLY PRO LEU TYR THR SEQRES 13 B 281 ALA THR LYS HIS ALA VAL VAL GLY LEU VAL ARG GLN MET SEQRES 14 B 281 ALA PHE GLU LEU ALA PRO HIS VAL ARG VAL ASN GLY VAL SEQRES 15 B 281 ALA PRO GLY GLY MET ASN THR ASP LEU ARG GLY PRO SER SEQRES 16 B 281 SER LEU GLY LEU SER GLU GLN SER ILE SER SER VAL PRO SEQRES 17 B 281 LEU ALA ASP MET LEU LYS SER VAL LEU PRO ILE GLY ARG SEQRES 18 B 281 MET PRO ALA LEU GLU GLU TYR THR GLY ALA TYR VAL PHE SEQRES 19 B 281 PHE ALA THR ARG GLY ASP SER LEU PRO ALA THR GLY ALA SEQRES 20 B 281 LEU LEU ASN TYR ASP GLY GLY MET GLY VAL ARG GLY PHE SEQRES 21 B 281 LEU THR ALA ALA GLY GLY ALA ASP LEU PRO GLU LYS LEU SEQRES 22 B 281 ASN ILE ASN ARG GLU GLY GLN GLU FORMUL 3 HOH *213(H2 O) HELIX 1 1 SER A 15 GLU A 28 1 14 HELIX 2 2 SER A 38 HIS A 49 1 12 HELIX 3 3 SER A 62 GLY A 78 1 17 HELIX 4 4 ALA A 95 LEU A 99 5 5 HELIX 5 5 LYS A 103 VAL A 116 1 14 HELIX 6 6 VAL A 116 ARG A 134 1 19 HELIX 7 7 SER A 142 PHE A 146 5 5 HELIX 8 8 GLY A 152 LEU A 173 1 22 HELIX 9 9 PRO A 208 VAL A 216 1 9 HELIX 10 10 ALA A 224 TYR A 228 5 5 HELIX 11 11 THR A 229 THR A 237 1 9 HELIX 12 12 THR A 237 LEU A 242 1 6 HELIX 13 13 GLY A 254 ARG A 258 5 5 HELIX 14 14 ASP A 268 LEU A 273 1 6 HELIX 15 15 SER B 15 GLU B 28 1 14 HELIX 16 16 SER B 38 GLY B 50 1 13 HELIX 17 17 SER B 62 GLY B 78 1 17 HELIX 18 18 ALA B 95 LEU B 99 5 5 HELIX 19 19 LYS B 103 VAL B 116 1 14 HELIX 20 20 VAL B 116 ARG B 134 1 19 HELIX 21 21 SER B 142 PHE B 146 5 5 HELIX 22 22 GLY B 152 ALA B 174 1 23 HELIX 23 23 PRO B 208 VAL B 216 5 9 HELIX 24 24 ALA B 224 TYR B 228 5 5 HELIX 25 25 THR B 229 THR B 237 1 9 HELIX 26 26 THR B 237 LEU B 242 1 6 HELIX 27 27 GLY B 254 ARG B 258 5 5 HELIX 28 28 ASP B 268 ASN B 274 1 7 SHEET 1 AA 7 ALA A 53 VAL A 57 0 SHEET 2 AA 7 ARG A 31 ASP A 36 1 O VAL A 32 N VAL A 54 SHEET 3 AA 7 VAL A 7 THR A 11 1 O ALA A 8 N ALA A 33 SHEET 4 AA 7 THR A 82 ILE A 84 1 O THR A 82 N LEU A 9 SHEET 5 AA 7 SER A 136 THR A 140 1 O SER A 136 N LEU A 83 SHEET 6 AA 7 ARG A 178 PRO A 184 1 O ARG A 178 N VAL A 137 SHEET 7 AA 7 LEU A 248 TYR A 251 1 O LEU A 249 N ALA A 183 SHEET 1 BA 7 ALA B 53 VAL B 57 0 SHEET 2 BA 7 ARG B 31 ASP B 36 1 O VAL B 32 N VAL B 54 SHEET 3 BA 7 VAL B 7 THR B 11 1 O ALA B 8 N ALA B 33 SHEET 4 BA 7 THR B 82 ILE B 84 1 O THR B 82 N LEU B 9 SHEET 5 BA 7 SER B 136 THR B 140 1 O SER B 136 N LEU B 83 SHEET 6 BA 7 ARG B 178 PRO B 184 1 O ARG B 178 N VAL B 137 SHEET 7 BA 7 LEU B 248 TYR B 251 1 O LEU B 249 N ALA B 183 CISPEP 1 ALA A 174 PRO A 175 0 2.22 CISPEP 2 ALA B 174 PRO B 175 0 2.85 CRYST1 75.692 75.692 176.876 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013211 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013211 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005654 0.00000