HEADER SUGAR BINDING PROTEIN 14-FEB-11 2Y9F TITLE HIGH-RESOLUTION STRUCTURAL INSIGHTS ON THE SUGAR-RECOGNITION AND TITLE 2 FUSION TAG PROPERTIES OF A VERSATILE B-TREFOIL LECTIN DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOLYTIC LECTIN LSLA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: B-TREFOIL DOMAIN, RESIDUES 1-150; COMPND 5 SYNONYM: LSL-150; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAETIPORUS SULPHUREUS; SOURCE 3 ORGANISM_TAXID: 5630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.ANGULO,I.ACEBRON,B.DE LAS RIVAS,R.MUNOZ,J.I.RODRIGUEZ,M.MENENDEZ, AUTHOR 2 P.GARCIA,H.TATENO,I.J.GOLDSTEIN,B.PEREZ-AGOTE,J.M.MANCHENO REVDAT 2 20-DEC-23 2Y9F 1 REMARK REVDAT 1 12-OCT-11 2Y9F 0 JRNL AUTH I.ANGULO,I.ACEBRON,B.DE LAS RIVAS,R.MUNOZ, JRNL AUTH 2 I.RODRIGUEZ-CRESPO,M.MENENDEZ,P.GARCIA,H.TATENO, JRNL AUTH 3 I.J.GOLDSTEIN,B.PEREZ-AGOTE,J.M.MANCHENO JRNL TITL HIGH-RESOLUTION STRUCTURAL INSIGHTS ON THE SUGAR-RECOGNITION JRNL TITL 2 AND FUSION TAG PROPERTIES OF A VERSATILE BETA-TREFOIL LECTIN JRNL TITL 3 DOMAIN FROM THE MUSHROOM LAETIPORUS SULPHUREUS. JRNL REF GLYCOBIOLOGY V. 21 1349 2011 JRNL REFN ISSN 0959-6658 JRNL PMID 21632870 JRNL DOI 10.1093/GLYCOB/CWR074 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 21152 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1138 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.50 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1523 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1212 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.073 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.529 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1253 ; 0.030 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1706 ; 2.315 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 148 ; 7.305 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 63 ;33.717 ;23.016 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 186 ;12.725 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;29.171 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 174 ; 0.179 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 998 ; 0.018 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 744 ; 1.339 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1206 ; 2.115 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 509 ; 3.243 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 500 ; 4.758 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3300 0.2800 -3.2370 REMARK 3 T TENSOR REMARK 3 T11: 0.0160 T22: 0.0224 REMARK 3 T33: 0.0026 T12: 0.0054 REMARK 3 T13: 0.0026 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.4459 L22: 1.8099 REMARK 3 L33: 0.8923 L12: 0.2548 REMARK 3 L13: 0.0211 L23: -0.1865 REMARK 3 S TENSOR REMARK 3 S11: -0.0359 S12: 0.0159 S13: 0.0298 REMARK 3 S21: -0.0162 S22: 0.0215 S23: -0.0330 REMARK 3 S31: -0.0102 S32: 0.0008 S33: 0.0143 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2Y9F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1290047378. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22387 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 34.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1W3A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% (W/V) PEG 4000, 100 MM TRIS-HCL, REMARK 280 PH 8.5, 150 MM SODIUM ACETATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.29000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.81000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.77000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 30.81000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.29000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.77000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 150 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2103 O HOH A 2182 1.90 REMARK 500 O HOH A 2185 O HOH A 2188 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 12 CE1 TYR A 12 CZ 0.086 REMARK 500 TYR A 47 CG TYR A 47 CD2 0.093 REMARK 500 TYR A 108 CD1 TYR A 108 CE1 0.130 REMARK 500 TYR A 108 CZ TYR A 108 CE2 -0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 12 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ASP A 41 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 TYR A 108 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TYR A 108 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 110 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 110 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 123 NH1 - CZ - NH2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 123 NE - CZ - NH1 ANGL. DEV. = -6.0 DEGREES REMARK 500 PHE A 144 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 2 -157.42 -132.64 REMARK 500 THR A 103 -118.65 41.68 REMARK 500 HIS A 125 -64.59 78.40 REMARK 500 TRP A 131 -159.40 -157.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2063 DISTANCE = 5.81 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1W3A RELATED DB: PDB REMARK 900 THREE DIMENSIONAL STRUCTURE OF A NOVEL PORE-FORMING LECTIN FROM THE REMARK 900 MUSHROOM LAETIPORUS SULPHUREUS REMARK 900 RELATED ID: 1W3F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HEMOLYTIC LECTIN FROM THE MUSHROOM REMARK 900 LAETIPORUS SULPHUREUS COMPLEXED WITH N- ACETYLLACTOSAMINE IN THE REMARK 900 GAMMA MOTIF REMARK 900 RELATED ID: 1W3G RELATED DB: PDB REMARK 900 HEMOLYTIC LECTIN FROM THE MUSHROOM LAETIPORUS SULPHUREUS COMPLEXED REMARK 900 WITH TWO N-ACETYLLACTOSAMINE MOLECULES. REMARK 900 RELATED ID: 2Y9G RELATED DB: PDB REMARK 900 HIGH-RESOLUTION STRUCTURAL INSIGHTS ON THE SUGAR- RECOGNITION AND REMARK 900 FUSION TAG PROPERTIES OF A VERSATILE B-TREFOIL LECTIN DOMAIN DBREF 2Y9F A 1 150 UNP Q7Z8V1 Q7Z8V1_9APHY 1 150 SEQRES 1 A 150 MET THR ASP ILE TYR ILE PRO PRO GLU GLY LEU TYR PHE SEQRES 2 A 150 ARG LEU LEU GLY PHE ALA SER ARG GLN VAL ILE PHE ALA SEQRES 3 A 150 ARG ASN SER PRO SER PRO ASP VAL GLY LEU SER PRO VAL SEQRES 4 A 150 ASN ASP GLN ALA THR ASP GLN TYR PHE SER LEU ILE TYR SEQRES 5 A 150 GLY THR GLY GLU HIS ALA GLY LEU TYR ALA ILE LYS SER SEQRES 6 A 150 LYS ALA THR GLY LYS VAL LEU PHE SER ARG ARG PRO ALA SEQRES 7 A 150 GLU PRO TYR VAL GLY GLN ILE ASP GLY ASP GLY ARG TYR SEQRES 8 A 150 PRO ASP ASN TRP PHE LYS ILE GLU PRO GLY LYS THR TYR SEQRES 9 A 150 LEU SER LYS TYR PHE ARG LEU VAL GLN PRO SER THR GLY SEQRES 10 A 150 THR ALA LEU VAL SER ARG THR HIS LEU GLN PRO TYR PHE SEQRES 11 A 150 TRP ASN HIS PRO GLN THR GLU VAL PHE ASP ASP GLN TYR SEQRES 12 A 150 PHE THR PHE LEU PHE GLU ASP FORMUL 2 HOH *252(H2 O) HELIX 1 1 ASN A 40 GLN A 42 5 3 HELIX 2 2 ALA A 43 GLN A 46 5 4 HELIX 3 3 THR A 54 ALA A 58 5 5 HELIX 4 4 TYR A 91 TRP A 95 5 5 HELIX 5 5 LYS A 102 SER A 106 5 5 HELIX 6 6 PHE A 139 ASP A 141 5 3 SHEET 1 AA 5 ARG A 14 GLY A 17 0 SHEET 2 AA 5 TYR A 143 LEU A 147 -1 O THR A 145 N LEU A 16 SHEET 3 AA 5 PHE A 109 GLN A 113 -1 O PHE A 109 N PHE A 144 SHEET 4 AA 5 THR A 118 SER A 122 -1 O THR A 118 N GLN A 113 SHEET 5 AA 5 PHE A 130 PRO A 134 -1 O TRP A 131 N VAL A 121 SHEET 1 AB 4 ARG A 14 GLY A 17 0 SHEET 2 AB 4 TYR A 143 LEU A 147 -1 O THR A 145 N LEU A 16 SHEET 3 AB 4 PHE A 109 GLN A 113 -1 O PHE A 109 N PHE A 144 SHEET 4 AB 4 LYS A 97 PRO A 100 -1 O LYS A 97 N VAL A 112 SHEET 1 AC 2 GLN A 22 ALA A 26 0 SHEET 2 AC 2 VAL A 34 PRO A 38 -1 O GLY A 35 N PHE A 25 SHEET 1 AD 2 PHE A 48 TYR A 52 0 SHEET 2 AD 2 TYR A 61 SER A 65 -1 O ALA A 62 N ILE A 51 SHEET 1 AE 2 VAL A 71 SER A 74 0 SHEET 2 AE 2 VAL A 82 ILE A 85 -1 O GLY A 83 N PHE A 73 CISPEP 1 SER A 31 PRO A 32 0 -7.32 CISPEP 2 ARG A 76 PRO A 77 0 16.99 CISPEP 3 GLU A 79 PRO A 80 0 -1.89 CISPEP 4 GLN A 127 PRO A 128 0 -2.56 CRYST1 34.580 59.540 61.620 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028918 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016795 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016228 0.00000