data_2Y9M # _entry.id 2Y9M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2Y9M PDBE EBI-47387 WWPDB D_1290047387 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2Y9O unspecified 'PEX4P-PEX22P MUTANT I STRUCTURE' PDB 2Y9P unspecified 'PEX4P-PEX22P MUTANT II STRUCTURE' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Y9M _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-02-15 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Williams, C.' 1 ? 'van den Berg, M.' 2 ? 'Panjikar, S.' 3 ? 'Distel, B.' 4 ? 'Wilmanns, M.' 5 ? # _citation.id primary _citation.title 'Insights Into Ubiquitin-Conjugating Enzyme/ Co-Activator Interactions from the Structure of the Pex4P:Pex22P Complex.' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 31 _citation.page_first 391 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22085930 _citation.pdbx_database_id_DOI 10.1038/EMBOJ.2011.411 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Williams, C.' 1 primary 'van den Berg, M.' 2 primary 'Panjikar, S.' 3 primary 'Stanley, W.A.' 4 primary 'Distel, B.' 5 primary 'Wilmanns, M.' 6 # _cell.entry_id 2Y9M _cell.length_a 139.328 _cell.length_b 43.194 _cell.length_c 60.474 _cell.angle_alpha 90.00 _cell.angle_beta 100.62 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y9M _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'UBIQUITIN-CONJUGATING ENZYME E2-21 KDA' 19573.463 1 6.3.2.19 YES 'UBC DOMAIN, RESIDUES 15-183' 'DISULPHIDE BOND BETWEEN RESIDUES 105 AND 146' 2 polymer man 'PEROXISOME ASSEMBLY PROTEIN 22' 14439.574 1 ? ? 'SOLUBLE DOMAIN, RESIDUES 54-180' ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 4 water nat water 18.015 9 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'PEX4P, PEROXIN-4, UBIQUITIN CARRIER PROTEIN, UBIQUITIN-PROTEIN LIGASE' 2 'PEX22P, PEROXIN-22' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GAMADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMN PPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVK YFLAERERINNH ; ;GAMADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMN PPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVK YFLAERERINNH ; A ? 2 'polypeptide(L)' no no ;GAMENKKARKSKCIIMSKSIQGLPIKWEEYAADEVVLLVPTSHTDGSMKQAIGDAFRKTKNEHKIIYCDSMDGLWSCVRR LGKFQCILNSRDFTSSGGSDAAVVPEDIGRFVKFVVDSDVEDVLIDTLCN ; ;GAMENKKARKSKCIIMSKSIQGLPIKWEEYAADEVVLLVPTSHTDGSMKQAIGDAFRKTKNEHKIIYCDSMDGLWSCVRR LGKFQCILNSRDFTSSGGSDAAVVPEDIGRFVKFVVDSDVEDVLIDTLCN ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 ALA n 1 5 ASP n 1 6 THR n 1 7 CYS n 1 8 MET n 1 9 SER n 1 10 ARG n 1 11 ILE n 1 12 VAL n 1 13 LYS n 1 14 GLU n 1 15 TYR n 1 16 LYS n 1 17 VAL n 1 18 ILE n 1 19 LEU n 1 20 LYS n 1 21 THR n 1 22 LEU n 1 23 ALA n 1 24 SER n 1 25 ASP n 1 26 ASP n 1 27 PRO n 1 28 ILE n 1 29 ALA n 1 30 ASN n 1 31 PRO n 1 32 TYR n 1 33 ARG n 1 34 GLY n 1 35 ILE n 1 36 ILE n 1 37 GLU n 1 38 SER n 1 39 LEU n 1 40 ASN n 1 41 PRO n 1 42 ILE n 1 43 ASP n 1 44 GLU n 1 45 THR n 1 46 ASP n 1 47 LEU n 1 48 SER n 1 49 LYS n 1 50 TRP n 1 51 GLU n 1 52 ALA n 1 53 ILE n 1 54 ILE n 1 55 SER n 1 56 GLY n 1 57 PRO n 1 58 SER n 1 59 ASP n 1 60 THR n 1 61 PRO n 1 62 TYR n 1 63 GLU n 1 64 ASN n 1 65 HIS n 1 66 GLN n 1 67 PHE n 1 68 ARG n 1 69 ILE n 1 70 LEU n 1 71 ILE n 1 72 GLU n 1 73 VAL n 1 74 PRO n 1 75 SER n 1 76 SER n 1 77 TYR n 1 78 PRO n 1 79 MET n 1 80 ASN n 1 81 PRO n 1 82 PRO n 1 83 LYS n 1 84 ILE n 1 85 SER n 1 86 PHE n 1 87 MET n 1 88 GLN n 1 89 ASN n 1 90 ASN n 1 91 ILE n 1 92 LEU n 1 93 HIS n 1 94 CYS n 1 95 ASN n 1 96 VAL n 1 97 LYS n 1 98 SER n 1 99 ALA n 1 100 THR n 1 101 GLY n 1 102 GLU n 1 103 ILE n 1 104 CYS n 1 105 LEU n 1 106 ASN n 1 107 ILE n 1 108 LEU n 1 109 LYS n 1 110 PRO n 1 111 GLU n 1 112 GLU n 1 113 TRP n 1 114 THR n 1 115 PRO n 1 116 VAL n 1 117 TRP n 1 118 ASP n 1 119 LEU n 1 120 LEU n 1 121 HIS n 1 122 CYS n 1 123 VAL n 1 124 HIS n 1 125 ALA n 1 126 VAL n 1 127 TRP n 1 128 ARG n 1 129 LEU n 1 130 LEU n 1 131 ARG n 1 132 GLU n 1 133 PRO n 1 134 VAL n 1 135 CYS n 1 136 ASP n 1 137 SER n 1 138 PRO n 1 139 LEU n 1 140 ASP n 1 141 VAL n 1 142 ASP n 1 143 ILE n 1 144 GLY n 1 145 ASN n 1 146 ILE n 1 147 ILE n 1 148 ARG n 1 149 CYS n 1 150 GLY n 1 151 ASP n 1 152 MET n 1 153 SER n 1 154 ALA n 1 155 TYR n 1 156 GLN n 1 157 GLY n 1 158 ILE n 1 159 VAL n 1 160 LYS n 1 161 TYR n 1 162 PHE n 1 163 LEU n 1 164 ALA n 1 165 GLU n 1 166 ARG n 1 167 GLU n 1 168 ARG n 1 169 ILE n 1 170 ASN n 1 171 ASN n 1 172 HIS n 2 1 GLY n 2 2 ALA n 2 3 MET n 2 4 GLU n 2 5 ASN n 2 6 LYS n 2 7 LYS n 2 8 ALA n 2 9 ARG n 2 10 LYS n 2 11 SER n 2 12 LYS n 2 13 CYS n 2 14 ILE n 2 15 ILE n 2 16 MET n 2 17 SER n 2 18 LYS n 2 19 SER n 2 20 ILE n 2 21 GLN n 2 22 GLY n 2 23 LEU n 2 24 PRO n 2 25 ILE n 2 26 LYS n 2 27 TRP n 2 28 GLU n 2 29 GLU n 2 30 TYR n 2 31 ALA n 2 32 ALA n 2 33 ASP n 2 34 GLU n 2 35 VAL n 2 36 VAL n 2 37 LEU n 2 38 LEU n 2 39 VAL n 2 40 PRO n 2 41 THR n 2 42 SER n 2 43 HIS n 2 44 THR n 2 45 ASP n 2 46 GLY n 2 47 SER n 2 48 MET n 2 49 LYS n 2 50 GLN n 2 51 ALA n 2 52 ILE n 2 53 GLY n 2 54 ASP n 2 55 ALA n 2 56 PHE n 2 57 ARG n 2 58 LYS n 2 59 THR n 2 60 LYS n 2 61 ASN n 2 62 GLU n 2 63 HIS n 2 64 LYS n 2 65 ILE n 2 66 ILE n 2 67 TYR n 2 68 CYS n 2 69 ASP n 2 70 SER n 2 71 MET n 2 72 ASP n 2 73 GLY n 2 74 LEU n 2 75 TRP n 2 76 SER n 2 77 CYS n 2 78 VAL n 2 79 ARG n 2 80 ARG n 2 81 LEU n 2 82 GLY n 2 83 LYS n 2 84 PHE n 2 85 GLN n 2 86 CYS n 2 87 ILE n 2 88 LEU n 2 89 ASN n 2 90 SER n 2 91 ARG n 2 92 ASP n 2 93 PHE n 2 94 THR n 2 95 SER n 2 96 SER n 2 97 GLY n 2 98 GLY n 2 99 SER n 2 100 ASP n 2 101 ALA n 2 102 ALA n 2 103 VAL n 2 104 VAL n 2 105 PRO n 2 106 GLU n 2 107 ASP n 2 108 ILE n 2 109 GLY n 2 110 ARG n 2 111 PHE n 2 112 VAL n 2 113 LYS n 2 114 PHE n 2 115 VAL n 2 116 VAL n 2 117 ASP n 2 118 SER n 2 119 ASP n 2 120 VAL n 2 121 GLU n 2 122 ASP n 2 123 VAL n 2 124 LEU n 2 125 ILE n 2 126 ASP n 2 127 THR n 2 128 LEU n 2 129 CYS n 2 130 ASN n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ;BAKER'S YEAST ; ? ? ? ? ? ? ? ? 'SACCHAROMYCES CEREVISIAE' 4932 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21(DE3)' RIL ? ? ? ? ? ? PLASMID PETM30 ? ? PCW187 ? ? 2 1 sample ? ? ? ;BAKER'S YEAST ; ? ? ? ? ? ? ? ? 'SACCHAROMYCES CEREVISIAE' 4932 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21(DE3)' RIL ? ? ? ? ? ? PLASMID PETM30 ? ? PCW218 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP UBCX_YEAST 1 ? ? P29340 ? 2 UNP PEX22_YEAST 2 ? ? P39718 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2Y9M A 4 ? 172 ? P29340 15 ? 183 ? 15 183 2 2 2Y9M B 4 ? 130 ? P39718 54 ? 180 ? 54 180 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2Y9M GLY A 1 ? UNP P29340 ? ? 'expression tag' 12 1 1 2Y9M ALA A 2 ? UNP P29340 ? ? 'expression tag' 13 2 1 2Y9M MET A 3 ? UNP P29340 ? ? 'expression tag' 14 3 1 2Y9M ALA A 4 ? UNP P29340 SER 15 'engineered mutation' 15 4 2 2Y9M GLY B 1 ? UNP P39718 ? ? 'expression tag' 51 5 2 2Y9M ALA B 2 ? UNP P39718 ? ? 'expression tag' 52 6 2 2Y9M MET B 3 ? UNP P39718 ? ? 'expression tag' 53 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2Y9M _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.76 _exptl_crystal.density_percent_sol 55.46 _exptl_crystal.description 'A 4 WAVELENGTH MAD DATA SET WAS COLLECTED AND THE MODEL FROM THIS DATASET WAS USED AS MR MODEL FOR THE NATIVE DATASET' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '8.0 % (V/V) ETHYLENE GLYCOL, 14.0 % (W/V) POLYETHYLENE GLYCOL, 0.1 M HEPES PH 7.0' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2008-11-20 _diffrn_detector.details 'DIAMOND 111' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DIAMOND 111' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9334 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength 0.9334 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2Y9M _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 34.70 _reflns.d_resolution_high 2.60 _reflns.number_obs 11039 _reflns.number_all ? _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.70 _reflns.B_iso_Wilson_estimate 52 _reflns.pdbx_redundancy 7.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.74 _reflns_shell.percent_possible_all 99.1 _reflns_shell.Rmerge_I_obs 0.47 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.80 _reflns_shell.pdbx_redundancy 7.6 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2Y9M _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10450 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 99.04 _refine.ls_R_factor_obs 0.20751 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20479 _refine.ls_R_factor_R_free 0.25924 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 564 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.897 _refine.B_iso_mean 46.852 _refine.aniso_B[1][1] -0.27 _refine.aniso_B[2][2] 0.17 _refine.aniso_B[3][3] 0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.24 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.380 _refine.pdbx_overall_ESU_R_Free 0.321 _refine.overall_SU_ML 0.228 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 22.417 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2227 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 9 _refine_hist.number_atoms_total 2252 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 2316 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.333 1.968 ? 3141 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.166 5.000 ? 288 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.846 24.526 ? 95 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.402 15.000 ? 411 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 9.895 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.090 0.200 ? 357 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.021 ? 1704 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.613 1.500 ? 1433 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.170 2.000 ? 2342 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.785 3.000 ? 881 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 2.875 4.500 ? 793 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.600 _refine_ls_shell.d_res_low 2.666 _refine_ls_shell.number_reflns_R_work 742 _refine_ls_shell.R_factor_R_work 0.277 _refine_ls_shell.percent_reflns_obs 98.62 _refine_ls_shell.R_factor_R_free 0.292 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 44 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2Y9M _struct.title 'Pex4p-Pex22p structure' _struct.pdbx_descriptor 'UBIQUITIN-CONJUGATING ENZYME E2-21 KDA (E.C.6.3.2.19), PEROXISOME ASSEMBLY PROTEIN 22' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Y9M _struct_keywords.pdbx_keywords 'LIGASE/TRANSPORT PROTEIN' _struct_keywords.text ;LIGASE-TRANSPORT PROTEIN COMPLEX, UBIQUITIN CONJUGATING ENZYME, E2 COMPLEX, PEROXISOMAL PROTEIN, ALPHA-BETA-ALPHA SANDWICH FOLD, E2 CO-ACTIVATOR ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 4 ? ALA A 23 ? ALA A 15 ALA A 34 1 ? 20 HELX_P HELX_P2 2 LEU A 105 ? LYS A 109 ? LEU A 116 LYS A 120 5 ? 5 HELX_P HELX_P3 3 ASP A 118 ? GLU A 132 ? ASP A 129 GLU A 143 1 ? 15 HELX_P HELX_P4 4 ASP A 140 ? ARG A 148 ? ASP A 151 ARG A 159 1 ? 9 HELX_P HELX_P5 5 ASP A 151 ? ARG A 168 ? ASP A 162 ARG A 179 1 ? 18 HELX_P HELX_P6 6 SER B 17 ? GLY B 22 ? SER B 67 GLY B 72 1 ? 6 HELX_P HELX_P7 7 LYS B 26 ? TYR B 30 ? LYS B 76 TYR B 80 5 ? 5 HELX_P HELX_P8 8 LYS B 49 ? LYS B 58 ? LYS B 99 LYS B 108 1 ? 10 HELX_P HELX_P9 9 ASN B 61 ? HIS B 63 ? ASN B 111 HIS B 113 5 ? 3 HELX_P HELX_P10 10 SER B 70 ? GLY B 82 ? SER B 120 GLY B 132 1 ? 13 HELX_P HELX_P11 11 ASN B 89 ? PHE B 93 ? ASN B 139 PHE B 143 5 ? 5 HELX_P HELX_P12 12 ASP B 107 ? PHE B 111 ? ASP B 157 PHE B 161 5 ? 5 HELX_P HELX_P13 13 VAL B 120 ? ASN B 130 ? VAL B 170 ASN B 180 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 94 SG A ? ? 1_555 A CYS 135 SG ? ? A CYS 105 A CYS 146 1_555 ? ? ? ? ? ? ? 2.034 ? disulf2 disulf ? ? A CYS 94 SG B ? ? 1_555 A CYS 135 SG ? ? A CYS 105 A CYS 146 1_555 ? ? ? ? ? ? ? 2.050 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TYR _struct_mon_prot_cis.label_seq_id 77 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TYR _struct_mon_prot_cis.auth_seq_id 88 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 78 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 89 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.59 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? BA ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel BA 1 2 ? parallel BA 2 3 ? parallel BA 3 4 ? parallel BA 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ILE A 36 ? PRO A 41 ? ILE A 47 PRO A 52 AA 2 LYS A 49 ? SER A 55 ? LYS A 60 SER A 66 AA 3 GLN A 66 ? GLU A 72 ? GLN A 77 GLU A 83 AA 4 LYS A 83 ? PHE A 86 ? LYS A 94 PHE A 97 BA 1 ILE B 65 ? CYS B 68 ? ILE B 115 CYS B 118 BA 2 VAL B 35 ? PRO B 40 ? VAL B 85 PRO B 90 BA 3 LYS B 12 ? ILE B 15 ? LYS B 62 ILE B 65 BA 4 GLN B 85 ? LEU B 88 ? GLN B 135 LEU B 138 BA 5 PHE B 114 ? ASP B 117 ? PHE B 164 ASP B 167 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ASN A 40 ? N ASN A 51 O GLU A 51 ? O GLU A 62 AA 2 3 N ILE A 54 ? N ILE A 65 O PHE A 67 ? O PHE A 78 AA 3 4 N GLU A 72 ? N GLU A 83 O LYS A 83 ? O LYS A 94 BA 1 2 N ILE B 66 ? N ILE B 116 O LEU B 37 ? O LEU B 87 BA 2 3 N VAL B 36 ? N VAL B 86 O LYS B 12 ? O LYS B 62 BA 3 4 N CYS B 13 ? N CYS B 63 O GLN B 85 ? O GLN B 135 BA 4 5 N CYS B 86 ? N CYS B 136 O PHE B 114 ? O PHE B 164 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EDO A 1180' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EDO B 1181' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE EDO A 1181' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE EDO B 1182' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLN A 66 ? GLN A 77 . ? 1_555 ? 2 AC1 4 ASN A 90 ? ASN A 101 . ? 1_555 ? 3 AC1 4 ARG A 166 ? ARG A 177 . ? 1_555 ? 4 AC1 4 HOH G . ? HOH A 2006 . ? 1_555 ? 5 AC2 4 SER B 19 ? SER B 69 . ? 2_556 ? 6 AC2 4 GLY B 22 ? GLY B 72 . ? 1_555 ? 7 AC2 4 GLY B 22 ? GLY B 72 . ? 2_556 ? 8 AC2 4 GLU B 121 ? GLU B 171 . ? 2_556 ? 9 AC3 5 LEU A 139 ? LEU A 150 . ? 1_555 ? 10 AC3 5 ASP A 140 ? ASP A 151 . ? 1_555 ? 11 AC3 5 VAL A 141 ? VAL A 152 . ? 1_555 ? 12 AC3 5 ARG B 80 ? ARG B 130 . ? 1_555 ? 13 AC3 5 ARG B 110 ? ARG B 160 . ? 2_555 ? 14 AC4 5 GLN A 88 ? GLN A 99 . ? 2_555 ? 15 AC4 5 THR A 100 ? THR A 111 . ? 2_555 ? 16 AC4 5 VAL B 115 ? VAL B 165 . ? 1_555 ? 17 AC4 5 VAL B 116 ? VAL B 166 . ? 1_555 ? 18 AC4 5 ASP B 117 ? ASP B 167 . ? 1_555 ? # _database_PDB_matrix.entry_id 2Y9M _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2Y9M _atom_sites.fract_transf_matrix[1][1] 0.007177 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001346 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023151 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016824 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 12 ? ? ? A . n A 1 2 ALA 2 13 ? ? ? A . n A 1 3 MET 3 14 14 MET MET A . n A 1 4 ALA 4 15 15 ALA ALA A . n A 1 5 ASP 5 16 16 ASP ASP A . n A 1 6 THR 6 17 17 THR THR A . n A 1 7 CYS 7 18 18 CYS CYS A . n A 1 8 MET 8 19 19 MET MET A . n A 1 9 SER 9 20 20 SER SER A . n A 1 10 ARG 10 21 21 ARG ARG A . n A 1 11 ILE 11 22 22 ILE ILE A . n A 1 12 VAL 12 23 23 VAL VAL A . n A 1 13 LYS 13 24 24 LYS LYS A . n A 1 14 GLU 14 25 25 GLU GLU A . n A 1 15 TYR 15 26 26 TYR TYR A . n A 1 16 LYS 16 27 27 LYS LYS A . n A 1 17 VAL 17 28 28 VAL VAL A . n A 1 18 ILE 18 29 29 ILE ILE A . n A 1 19 LEU 19 30 30 LEU LEU A . n A 1 20 LYS 20 31 31 LYS LYS A . n A 1 21 THR 21 32 32 THR THR A . n A 1 22 LEU 22 33 33 LEU LEU A . n A 1 23 ALA 23 34 34 ALA ALA A . n A 1 24 SER 24 35 35 SER SER A . n A 1 25 ASP 25 36 36 ASP ASP A . n A 1 26 ASP 26 37 37 ASP ASP A . n A 1 27 PRO 27 38 38 PRO PRO A . n A 1 28 ILE 28 39 39 ILE ILE A . n A 1 29 ALA 29 40 40 ALA ALA A . n A 1 30 ASN 30 41 41 ASN ASN A . n A 1 31 PRO 31 42 42 PRO PRO A . n A 1 32 TYR 32 43 43 TYR TYR A . n A 1 33 ARG 33 44 44 ARG ARG A . n A 1 34 GLY 34 45 45 GLY GLY A . n A 1 35 ILE 35 46 46 ILE ILE A . n A 1 36 ILE 36 47 47 ILE ILE A . n A 1 37 GLU 37 48 48 GLU GLU A . n A 1 38 SER 38 49 49 SER SER A . n A 1 39 LEU 39 50 50 LEU LEU A . n A 1 40 ASN 40 51 51 ASN ASN A . n A 1 41 PRO 41 52 52 PRO PRO A . n A 1 42 ILE 42 53 53 ILE ILE A . n A 1 43 ASP 43 54 54 ASP ASP A . n A 1 44 GLU 44 55 55 GLU GLU A . n A 1 45 THR 45 56 56 THR THR A . n A 1 46 ASP 46 57 57 ASP ASP A . n A 1 47 LEU 47 58 58 LEU LEU A . n A 1 48 SER 48 59 59 SER SER A . n A 1 49 LYS 49 60 60 LYS LYS A . n A 1 50 TRP 50 61 61 TRP TRP A . n A 1 51 GLU 51 62 62 GLU GLU A . n A 1 52 ALA 52 63 63 ALA ALA A . n A 1 53 ILE 53 64 64 ILE ILE A . n A 1 54 ILE 54 65 65 ILE ILE A . n A 1 55 SER 55 66 66 SER SER A . n A 1 56 GLY 56 67 67 GLY GLY A . n A 1 57 PRO 57 68 68 PRO PRO A . n A 1 58 SER 58 69 69 SER SER A . n A 1 59 ASP 59 70 70 ASP ASP A . n A 1 60 THR 60 71 71 THR THR A . n A 1 61 PRO 61 72 72 PRO PRO A . n A 1 62 TYR 62 73 73 TYR TYR A . n A 1 63 GLU 63 74 74 GLU GLU A . n A 1 64 ASN 64 75 75 ASN ASN A . n A 1 65 HIS 65 76 76 HIS HIS A . n A 1 66 GLN 66 77 77 GLN GLN A . n A 1 67 PHE 67 78 78 PHE PHE A . n A 1 68 ARG 68 79 79 ARG ARG A . n A 1 69 ILE 69 80 80 ILE ILE A . n A 1 70 LEU 70 81 81 LEU LEU A . n A 1 71 ILE 71 82 82 ILE ILE A . n A 1 72 GLU 72 83 83 GLU GLU A . n A 1 73 VAL 73 84 84 VAL VAL A . n A 1 74 PRO 74 85 85 PRO PRO A . n A 1 75 SER 75 86 86 SER SER A . n A 1 76 SER 76 87 87 SER SER A . n A 1 77 TYR 77 88 88 TYR TYR A . n A 1 78 PRO 78 89 89 PRO PRO A . n A 1 79 MET 79 90 90 MET MET A . n A 1 80 ASN 80 91 91 ASN ASN A . n A 1 81 PRO 81 92 92 PRO PRO A . n A 1 82 PRO 82 93 93 PRO PRO A . n A 1 83 LYS 83 94 94 LYS LYS A . n A 1 84 ILE 84 95 95 ILE ILE A . n A 1 85 SER 85 96 96 SER SER A . n A 1 86 PHE 86 97 97 PHE PHE A . n A 1 87 MET 87 98 98 MET MET A . n A 1 88 GLN 88 99 99 GLN GLN A . n A 1 89 ASN 89 100 100 ASN ASN A . n A 1 90 ASN 90 101 101 ASN ASN A . n A 1 91 ILE 91 102 102 ILE ILE A . n A 1 92 LEU 92 103 103 LEU LEU A . n A 1 93 HIS 93 104 104 HIS HIS A . n A 1 94 CYS 94 105 105 CYS CYS A . n A 1 95 ASN 95 106 106 ASN ASN A . n A 1 96 VAL 96 107 107 VAL VAL A . n A 1 97 LYS 97 108 108 LYS LYS A . n A 1 98 SER 98 109 109 SER SER A . n A 1 99 ALA 99 110 110 ALA ALA A . n A 1 100 THR 100 111 111 THR THR A . n A 1 101 GLY 101 112 112 GLY GLY A . n A 1 102 GLU 102 113 113 GLU GLU A . n A 1 103 ILE 103 114 114 ILE ILE A . n A 1 104 CYS 104 115 115 CYS CYS A . n A 1 105 LEU 105 116 116 LEU LEU A . n A 1 106 ASN 106 117 117 ASN ASN A . n A 1 107 ILE 107 118 118 ILE ILE A . n A 1 108 LEU 108 119 119 LEU LEU A . n A 1 109 LYS 109 120 120 LYS LYS A . n A 1 110 PRO 110 121 121 PRO PRO A . n A 1 111 GLU 111 122 122 GLU GLU A . n A 1 112 GLU 112 123 123 GLU GLU A . n A 1 113 TRP 113 124 124 TRP TRP A . n A 1 114 THR 114 125 125 THR THR A . n A 1 115 PRO 115 126 126 PRO PRO A . n A 1 116 VAL 116 127 127 VAL VAL A . n A 1 117 TRP 117 128 128 TRP TRP A . n A 1 118 ASP 118 129 129 ASP ASP A . n A 1 119 LEU 119 130 130 LEU LEU A . n A 1 120 LEU 120 131 131 LEU LEU A . n A 1 121 HIS 121 132 132 HIS HIS A . n A 1 122 CYS 122 133 133 CYS CYS A . n A 1 123 VAL 123 134 134 VAL VAL A . n A 1 124 HIS 124 135 135 HIS HIS A . n A 1 125 ALA 125 136 136 ALA ALA A . n A 1 126 VAL 126 137 137 VAL VAL A . n A 1 127 TRP 127 138 138 TRP TRP A . n A 1 128 ARG 128 139 139 ARG ARG A . n A 1 129 LEU 129 140 140 LEU LEU A . n A 1 130 LEU 130 141 141 LEU LEU A . n A 1 131 ARG 131 142 142 ARG ARG A . n A 1 132 GLU 132 143 143 GLU GLU A . n A 1 133 PRO 133 144 144 PRO PRO A . n A 1 134 VAL 134 145 145 VAL VAL A . n A 1 135 CYS 135 146 146 CYS CYS A . n A 1 136 ASP 136 147 147 ASP ASP A . n A 1 137 SER 137 148 148 SER SER A . n A 1 138 PRO 138 149 149 PRO PRO A . n A 1 139 LEU 139 150 150 LEU LEU A . n A 1 140 ASP 140 151 151 ASP ASP A . n A 1 141 VAL 141 152 152 VAL VAL A . n A 1 142 ASP 142 153 153 ASP ASP A . n A 1 143 ILE 143 154 154 ILE ILE A . n A 1 144 GLY 144 155 155 GLY GLY A . n A 1 145 ASN 145 156 156 ASN ASN A . n A 1 146 ILE 146 157 157 ILE ILE A . n A 1 147 ILE 147 158 158 ILE ILE A . n A 1 148 ARG 148 159 159 ARG ARG A . n A 1 149 CYS 149 160 160 CYS CYS A . n A 1 150 GLY 150 161 161 GLY GLY A . n A 1 151 ASP 151 162 162 ASP ASP A . n A 1 152 MET 152 163 163 MET MET A . n A 1 153 SER 153 164 164 SER SER A . n A 1 154 ALA 154 165 165 ALA ALA A . n A 1 155 TYR 155 166 166 TYR TYR A . n A 1 156 GLN 156 167 167 GLN GLN A . n A 1 157 GLY 157 168 168 GLY GLY A . n A 1 158 ILE 158 169 169 ILE ILE A . n A 1 159 VAL 159 170 170 VAL VAL A . n A 1 160 LYS 160 171 171 LYS LYS A . n A 1 161 TYR 161 172 172 TYR TYR A . n A 1 162 PHE 162 173 173 PHE PHE A . n A 1 163 LEU 163 174 174 LEU LEU A . n A 1 164 ALA 164 175 175 ALA ALA A . n A 1 165 GLU 165 176 176 GLU GLU A . n A 1 166 ARG 166 177 177 ARG ARG A . n A 1 167 GLU 167 178 178 GLU GLU A . n A 1 168 ARG 168 179 179 ARG ARG A . n A 1 169 ILE 169 180 ? ? ? A . n A 1 170 ASN 170 181 ? ? ? A . n A 1 171 ASN 171 182 ? ? ? A . n A 1 172 HIS 172 183 ? ? ? A . n B 2 1 GLY 1 51 ? ? ? B . n B 2 2 ALA 2 52 ? ? ? B . n B 2 3 MET 3 53 ? ? ? B . n B 2 4 GLU 4 54 ? ? ? B . n B 2 5 ASN 5 55 ? ? ? B . n B 2 6 LYS 6 56 ? ? ? B . n B 2 7 LYS 7 57 57 LYS LYS B . n B 2 8 ALA 8 58 58 ALA ALA B . n B 2 9 ARG 9 59 59 ARG ARG B . n B 2 10 LYS 10 60 60 LYS LYS B . n B 2 11 SER 11 61 61 SER SER B . n B 2 12 LYS 12 62 62 LYS LYS B . n B 2 13 CYS 13 63 63 CYS CYS B . n B 2 14 ILE 14 64 64 ILE ILE B . n B 2 15 ILE 15 65 65 ILE ILE B . n B 2 16 MET 16 66 66 MET MET B . n B 2 17 SER 17 67 67 SER SER B . n B 2 18 LYS 18 68 68 LYS LYS B . n B 2 19 SER 19 69 69 SER SER B . n B 2 20 ILE 20 70 70 ILE ILE B . n B 2 21 GLN 21 71 71 GLN GLN B . n B 2 22 GLY 22 72 72 GLY GLY B . n B 2 23 LEU 23 73 73 LEU LEU B . n B 2 24 PRO 24 74 74 PRO PRO B . n B 2 25 ILE 25 75 75 ILE ILE B . n B 2 26 LYS 26 76 76 LYS LYS B . n B 2 27 TRP 27 77 77 TRP TRP B . n B 2 28 GLU 28 78 78 GLU GLU B . n B 2 29 GLU 29 79 79 GLU GLU B . n B 2 30 TYR 30 80 80 TYR TYR B . n B 2 31 ALA 31 81 81 ALA ALA B . n B 2 32 ALA 32 82 82 ALA ALA B . n B 2 33 ASP 33 83 83 ASP ASP B . n B 2 34 GLU 34 84 84 GLU GLU B . n B 2 35 VAL 35 85 85 VAL VAL B . n B 2 36 VAL 36 86 86 VAL VAL B . n B 2 37 LEU 37 87 87 LEU LEU B . n B 2 38 LEU 38 88 88 LEU LEU B . n B 2 39 VAL 39 89 89 VAL VAL B . n B 2 40 PRO 40 90 90 PRO PRO B . n B 2 41 THR 41 91 91 THR THR B . n B 2 42 SER 42 92 92 SER SER B . n B 2 43 HIS 43 93 93 HIS HIS B . n B 2 44 THR 44 94 94 THR THR B . n B 2 45 ASP 45 95 95 ASP ASP B . n B 2 46 GLY 46 96 96 GLY GLY B . n B 2 47 SER 47 97 97 SER SER B . n B 2 48 MET 48 98 98 MET MET B . n B 2 49 LYS 49 99 99 LYS LYS B . n B 2 50 GLN 50 100 100 GLN GLN B . n B 2 51 ALA 51 101 101 ALA ALA B . n B 2 52 ILE 52 102 102 ILE ILE B . n B 2 53 GLY 53 103 103 GLY GLY B . n B 2 54 ASP 54 104 104 ASP ASP B . n B 2 55 ALA 55 105 105 ALA ALA B . n B 2 56 PHE 56 106 106 PHE PHE B . n B 2 57 ARG 57 107 107 ARG ARG B . n B 2 58 LYS 58 108 108 LYS LYS B . n B 2 59 THR 59 109 109 THR THR B . n B 2 60 LYS 60 110 110 LYS LYS B . n B 2 61 ASN 61 111 111 ASN ASN B . n B 2 62 GLU 62 112 112 GLU GLU B . n B 2 63 HIS 63 113 113 HIS HIS B . n B 2 64 LYS 64 114 114 LYS LYS B . n B 2 65 ILE 65 115 115 ILE ILE B . n B 2 66 ILE 66 116 116 ILE ILE B . n B 2 67 TYR 67 117 117 TYR TYR B . n B 2 68 CYS 68 118 118 CYS CYS B . n B 2 69 ASP 69 119 119 ASP ASP B . n B 2 70 SER 70 120 120 SER SER B . n B 2 71 MET 71 121 121 MET MET B . n B 2 72 ASP 72 122 122 ASP ASP B . n B 2 73 GLY 73 123 123 GLY GLY B . n B 2 74 LEU 74 124 124 LEU LEU B . n B 2 75 TRP 75 125 125 TRP TRP B . n B 2 76 SER 76 126 126 SER SER B . n B 2 77 CYS 77 127 127 CYS CYS B . n B 2 78 VAL 78 128 128 VAL VAL B . n B 2 79 ARG 79 129 129 ARG ARG B . n B 2 80 ARG 80 130 130 ARG ARG B . n B 2 81 LEU 81 131 131 LEU LEU B . n B 2 82 GLY 82 132 132 GLY GLY B . n B 2 83 LYS 83 133 133 LYS LYS B . n B 2 84 PHE 84 134 134 PHE PHE B . n B 2 85 GLN 85 135 135 GLN GLN B . n B 2 86 CYS 86 136 136 CYS CYS B . n B 2 87 ILE 87 137 137 ILE ILE B . n B 2 88 LEU 88 138 138 LEU LEU B . n B 2 89 ASN 89 139 139 ASN ASN B . n B 2 90 SER 90 140 140 SER SER B . n B 2 91 ARG 91 141 141 ARG ARG B . n B 2 92 ASP 92 142 142 ASP ASP B . n B 2 93 PHE 93 143 143 PHE PHE B . n B 2 94 THR 94 144 144 THR THR B . n B 2 95 SER 95 145 ? ? ? B . n B 2 96 SER 96 146 ? ? ? B . n B 2 97 GLY 97 147 ? ? ? B . n B 2 98 GLY 98 148 ? ? ? B . n B 2 99 SER 99 149 ? ? ? B . n B 2 100 ASP 100 150 ? ? ? B . n B 2 101 ALA 101 151 ? ? ? B . n B 2 102 ALA 102 152 152 ALA ALA B . n B 2 103 VAL 103 153 153 VAL VAL B . n B 2 104 VAL 104 154 154 VAL VAL B . n B 2 105 PRO 105 155 155 PRO PRO B . n B 2 106 GLU 106 156 156 GLU GLU B . n B 2 107 ASP 107 157 157 ASP ASP B . n B 2 108 ILE 108 158 158 ILE ILE B . n B 2 109 GLY 109 159 159 GLY GLY B . n B 2 110 ARG 110 160 160 ARG ARG B . n B 2 111 PHE 111 161 161 PHE PHE B . n B 2 112 VAL 112 162 162 VAL VAL B . n B 2 113 LYS 113 163 163 LYS LYS B . n B 2 114 PHE 114 164 164 PHE PHE B . n B 2 115 VAL 115 165 165 VAL VAL B . n B 2 116 VAL 116 166 166 VAL VAL B . n B 2 117 ASP 117 167 167 ASP ASP B . n B 2 118 SER 118 168 168 SER SER B . n B 2 119 ASP 119 169 169 ASP ASP B . n B 2 120 VAL 120 170 170 VAL VAL B . n B 2 121 GLU 121 171 171 GLU GLU B . n B 2 122 ASP 122 172 172 ASP ASP B . n B 2 123 VAL 123 173 173 VAL VAL B . n B 2 124 LEU 124 174 174 LEU LEU B . n B 2 125 ILE 125 175 175 ILE ILE B . n B 2 126 ASP 126 176 176 ASP ASP B . n B 2 127 THR 127 177 177 THR THR B . n B 2 128 LEU 128 178 178 LEU LEU B . n B 2 129 CYS 129 179 179 CYS CYS B . n B 2 130 ASN 130 180 180 ASN ASN B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO 1 1180 1180 EDO EDO A . D 3 EDO 1 1181 1181 EDO EDO A . E 3 EDO 1 1181 1181 EDO EDO B . F 3 EDO 1 1182 1182 EDO EDO B . G 4 HOH 1 2001 2001 HOH HOH A . G 4 HOH 2 2002 2002 HOH HOH A . G 4 HOH 3 2003 2003 HOH HOH A . G 4 HOH 4 2004 2004 HOH HOH A . G 4 HOH 5 2005 2005 HOH HOH A . G 4 HOH 6 2006 2006 HOH HOH A . H 4 HOH 1 2001 2001 HOH HOH B . H 4 HOH 2 2002 2002 HOH HOH B . H 4 HOH 3 2003 2003 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2120 ? 1 MORE -1.4 ? 1 'SSA (A^2)' 14300 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-10-26 2 'Structure model' 1 1 2011-11-23 3 'Structure model' 1 2 2011-12-07 4 'Structure model' 1 3 2012-01-25 5 'Structure model' 1 4 2012-04-18 6 'Structure model' 1 5 2017-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' Other 4 5 'Structure model' Other 5 6 'Structure model' 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 6 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation_author # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 6 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_citation_author.name' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -23.4953 -28.3906 -37.2317 0.1670 0.2613 0.1281 -0.0116 0.0180 -0.0210 8.5627 20.7428 13.3796 -13.3272 -10.7036 16.6593 0.4241 -0.3024 0.8957 -0.0143 -0.2902 0.5736 -1.3256 -1.1711 -0.1338 'X-RAY DIFFRACTION' 2 ? refined -34.0124 -20.1915 -21.0412 0.1955 0.3077 0.3240 0.0308 -0.0349 -0.0023 2.3249 1.9456 3.5058 1.1288 2.3246 -0.1563 -0.1386 0.1181 0.0524 -0.1908 -0.0090 0.5071 -0.0859 -0.7215 0.1477 'X-RAY DIFFRACTION' 3 ? refined -21.4086 -25.5542 -15.7515 0.2136 0.1744 0.2418 0.0092 0.0271 -0.0019 1.9920 1.0424 3.5224 0.6879 1.3507 0.1491 0.0376 0.1883 -0.2118 -0.0939 -0.0119 0.1689 0.1895 -0.0931 -0.0258 'X-RAY DIFFRACTION' 4 ? refined -16.7605 -25.8063 1.3471 0.2025 0.2341 0.2391 -0.0032 -0.0284 0.0183 3.6085 1.8562 3.1129 0.2178 -0.3209 0.8972 -0.0239 0.0291 -0.3556 -0.0838 0.0163 0.5885 0.3683 -0.3281 0.0076 'X-RAY DIFFRACTION' 5 ? refined -5.4325 -11.2867 17.4607 0.3129 0.1306 0.2796 -0.0006 0.1678 -0.0334 1.7213 0.4334 3.3439 -0.6848 0.1723 0.6631 0.0674 -0.0689 0.6089 0.1205 0.0243 0.1087 -0.8135 -0.1337 -0.0916 'X-RAY DIFFRACTION' 6 ? refined -11.2535 -17.8304 13.5267 0.1828 0.2035 0.1300 0.0196 0.0863 0.0101 3.6909 4.1664 1.9151 -1.4388 -0.6208 1.1986 -0.0557 -0.5499 -0.0207 0.6800 -0.0098 0.6636 -0.0760 -0.4388 0.0655 'X-RAY DIFFRACTION' 7 ? refined 1.7403 -20.8241 16.5776 0.1651 0.1757 0.1876 0.0271 0.0031 0.0508 1.6985 0.2101 6.8958 0.1901 -1.5187 0.8525 0.0799 -0.2885 0.1876 0.3038 -0.0098 0.1278 -0.0373 0.0003 -0.0701 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 14 ? ? A 19 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 20 ? ? A 52 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 53 ? ? A 139 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 140 ? ? A 179 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 B 57 ? ? B 80 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 81 ? ? B 138 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 B 139 ? ? B 180 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 Auto-Rickshaw phasing . ? 3 autoSHARP phasing . ? 4 REFMAC refinement 5.4.0069 ? 5 # _pdbx_entry_details.entry_id 2Y9M _pdbx_entry_details.compound_details 'ENGINEERED RESIDUE IN CHAIN A, SER 15 TO ALA' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;RESIDUE 15 IS MUTATED FROM SERINE TO ALANINE TO AID CLONING. THE N-TERMINAL GLYCINE IS LEFT OVER FROM THE TAG THE N-TERMINAL GLYCINE AND ALANINE ARE LEFT OVER FROM THE TAG ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NH2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 21 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 PRO _pdbx_validate_close_contact.auth_seq_id_2 126 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.12 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 118 ? ? -59.96 -0.69 2 1 PRO A 126 ? ? -58.73 -9.24 3 1 ASP A 129 ? ? -121.11 -169.69 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 14 ? N ? A MET 3 N 2 1 Y 1 A ASP 16 ? CG ? A ASP 5 CG 3 1 Y 1 A ASP 16 ? OD1 ? A ASP 5 OD1 4 1 Y 1 A ASP 16 ? OD2 ? A ASP 5 OD2 5 1 Y 1 A ARG 44 ? CD ? A ARG 33 CD 6 1 Y 1 A ARG 44 ? NE ? A ARG 33 NE 7 1 Y 1 A ARG 44 ? CZ ? A ARG 33 CZ 8 1 Y 1 A ARG 44 ? NH1 ? A ARG 33 NH1 9 1 Y 1 A ARG 44 ? NH2 ? A ARG 33 NH2 10 1 Y 1 A ARG 139 ? NE ? A ARG 128 NE 11 1 Y 1 A ARG 139 ? CZ ? A ARG 128 CZ 12 1 Y 1 A ARG 139 ? NH1 ? A ARG 128 NH1 13 1 Y 1 A ARG 139 ? NH2 ? A ARG 128 NH2 14 1 Y 1 B LYS 57 ? CE ? B LYS 7 CE 15 1 Y 1 B LYS 57 ? NZ ? B LYS 7 NZ 16 1 Y 1 B GLU 79 ? CD ? B GLU 29 CD 17 1 Y 1 B GLU 79 ? OE1 ? B GLU 29 OE1 18 1 Y 1 B GLU 79 ? OE2 ? B GLU 29 OE2 19 1 Y 1 B GLN 100 ? CG ? B GLN 50 CG 20 1 Y 1 B GLN 100 ? CD ? B GLN 50 CD 21 1 Y 1 B GLN 100 ? OE1 ? B GLN 50 OE1 22 1 Y 1 B GLN 100 ? NE2 ? B GLN 50 NE2 23 1 Y 1 B GLU 156 ? OE1 ? B GLU 106 OE1 24 1 Y 1 B GLU 156 ? OE2 ? B GLU 106 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 12 ? A GLY 1 2 1 Y 1 A ALA 13 ? A ALA 2 3 1 Y 1 A ILE 180 ? A ILE 169 4 1 Y 1 A ASN 181 ? A ASN 170 5 1 Y 1 A ASN 182 ? A ASN 171 6 1 Y 1 A HIS 183 ? A HIS 172 7 1 Y 1 B GLY 51 ? B GLY 1 8 1 Y 1 B ALA 52 ? B ALA 2 9 1 Y 1 B MET 53 ? B MET 3 10 1 Y 1 B GLU 54 ? B GLU 4 11 1 Y 1 B ASN 55 ? B ASN 5 12 1 Y 1 B LYS 56 ? B LYS 6 13 1 Y 1 B SER 145 ? B SER 95 14 1 Y 1 B SER 146 ? B SER 96 15 1 Y 1 B GLY 147 ? B GLY 97 16 1 Y 1 B GLY 148 ? B GLY 98 17 1 Y 1 B SER 149 ? B SER 99 18 1 Y 1 B ASP 150 ? B ASP 100 19 1 Y 1 B ALA 151 ? B ALA 101 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 1,2-ETHANEDIOL EDO 4 water HOH #