HEADER LIGASE/TRANSPORT PROTEIN 15-FEB-11 2Y9M TITLE PEX4P-PEX22P STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2-21 KDA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBC DOMAIN, RESIDUES 15-183; COMPND 5 SYNONYM: PEX4P, PEROXIN-4, UBIQUITIN CARRIER PROTEIN, UBIQUITIN- COMPND 6 PROTEIN LIGASE; COMPND 7 EC: 6.3.2.19; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: DISULPHIDE BOND BETWEEN RESIDUES 105 AND 146; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: PEROXISOME ASSEMBLY PROTEIN 22; COMPND 13 CHAIN: B; COMPND 14 FRAGMENT: SOLUBLE DOMAIN, RESIDUES 54-180; COMPND 15 SYNONYM: PEX22P, PEROXIN-22; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PETM30; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCW187; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 14 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 15 ORGANISM_TAXID: 4932; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_VECTOR: PETM30; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PCW218 KEYWDS LIGASE-TRANSPORT PROTEIN COMPLEX, UBIQUITIN CONJUGATING ENZYME, E2 KEYWDS 2 COMPLEX, PEROXISOMAL PROTEIN, ALPHA-BETA-ALPHA SANDWICH FOLD, E2 CO- KEYWDS 3 ACTIVATOR EXPDTA X-RAY DIFFRACTION AUTHOR C.WILLIAMS,M.VAN DEN BERG,S.PANJIKAR,B.DISTEL,M.WILMANNS REVDAT 6 13-DEC-17 2Y9M 1 JRNL REVDAT 5 18-APR-12 2Y9M 1 JRNL REVDAT 4 25-JAN-12 2Y9M 1 JRNL REVDAT 3 07-DEC-11 2Y9M 1 JRNL REVDAT 2 23-NOV-11 2Y9M 1 JRNL REVDAT 1 26-OCT-11 2Y9M 0 JRNL AUTH C.WILLIAMS,M.VAN DEN BERG,S.PANJIKAR,W.A.STANLEY,B.DISTEL, JRNL AUTH 2 M.WILMANNS JRNL TITL INSIGHTS INTO UBIQUITIN-CONJUGATING ENZYME/ CO-ACTIVATOR JRNL TITL 2 INTERACTIONS FROM THE STRUCTURE OF THE PEX4P:PEX22P COMPLEX. JRNL REF EMBO J. V. 31 391 2011 JRNL REFN ISSN 0261-4189 JRNL PMID 22085930 JRNL DOI 10.1038/EMBOJ.2011.411 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 10450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 564 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 742 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2227 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.380 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.321 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.228 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.417 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2316 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3141 ; 1.333 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 288 ; 6.166 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;32.846 ;24.526 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 411 ;17.402 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ; 9.895 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 357 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1704 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1433 ; 0.613 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2342 ; 1.170 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 881 ; 1.785 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 793 ; 2.875 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 14 A 19 REMARK 3 ORIGIN FOR THE GROUP (A): -23.4953 -28.3906 -37.2317 REMARK 3 T TENSOR REMARK 3 T11: 0.1670 T22: 0.2613 REMARK 3 T33: 0.1281 T12: -0.0116 REMARK 3 T13: 0.0180 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 8.5627 L22: 20.7428 REMARK 3 L33: 13.3796 L12: -13.3272 REMARK 3 L13: -10.7036 L23: 16.6593 REMARK 3 S TENSOR REMARK 3 S11: 0.4241 S12: -0.3024 S13: 0.8957 REMARK 3 S21: -0.0143 S22: -0.2902 S23: 0.5736 REMARK 3 S31: -1.3256 S32: -1.1711 S33: -0.1338 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 52 REMARK 3 ORIGIN FOR THE GROUP (A): -34.0124 -20.1915 -21.0412 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.3077 REMARK 3 T33: 0.3240 T12: 0.0308 REMARK 3 T13: -0.0349 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 2.3249 L22: 1.9456 REMARK 3 L33: 3.5058 L12: 1.1288 REMARK 3 L13: 2.3246 L23: -0.1563 REMARK 3 S TENSOR REMARK 3 S11: -0.1386 S12: 0.1181 S13: 0.0524 REMARK 3 S21: -0.1908 S22: -0.0090 S23: 0.5071 REMARK 3 S31: -0.0859 S32: -0.7215 S33: 0.1477 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): -21.4086 -25.5542 -15.7515 REMARK 3 T TENSOR REMARK 3 T11: 0.2136 T22: 0.1744 REMARK 3 T33: 0.2418 T12: 0.0092 REMARK 3 T13: 0.0271 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.9920 L22: 1.0424 REMARK 3 L33: 3.5224 L12: 0.6879 REMARK 3 L13: 1.3507 L23: 0.1491 REMARK 3 S TENSOR REMARK 3 S11: 0.0376 S12: 0.1883 S13: -0.2118 REMARK 3 S21: -0.0939 S22: -0.0119 S23: 0.1689 REMARK 3 S31: 0.1895 S32: -0.0931 S33: -0.0258 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 140 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): -16.7605 -25.8063 1.3471 REMARK 3 T TENSOR REMARK 3 T11: 0.2025 T22: 0.2341 REMARK 3 T33: 0.2391 T12: -0.0032 REMARK 3 T13: -0.0284 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 3.6085 L22: 1.8562 REMARK 3 L33: 3.1129 L12: 0.2178 REMARK 3 L13: -0.3209 L23: 0.8972 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: 0.0291 S13: -0.3556 REMARK 3 S21: -0.0838 S22: 0.0163 S23: 0.5885 REMARK 3 S31: 0.3683 S32: -0.3281 S33: 0.0076 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 57 B 80 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4325 -11.2867 17.4607 REMARK 3 T TENSOR REMARK 3 T11: 0.3129 T22: 0.1306 REMARK 3 T33: 0.2796 T12: -0.0006 REMARK 3 T13: 0.1678 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 1.7213 L22: 0.4334 REMARK 3 L33: 3.3439 L12: -0.6848 REMARK 3 L13: 0.1723 L23: 0.6631 REMARK 3 S TENSOR REMARK 3 S11: 0.0674 S12: -0.0689 S13: 0.6089 REMARK 3 S21: 0.1205 S22: 0.0243 S23: 0.1087 REMARK 3 S31: -0.8135 S32: -0.1337 S33: -0.0916 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 81 B 138 REMARK 3 ORIGIN FOR THE GROUP (A): -11.2535 -17.8304 13.5267 REMARK 3 T TENSOR REMARK 3 T11: 0.1828 T22: 0.2035 REMARK 3 T33: 0.1300 T12: 0.0196 REMARK 3 T13: 0.0863 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 3.6909 L22: 4.1664 REMARK 3 L33: 1.9151 L12: -1.4388 REMARK 3 L13: -0.6208 L23: 1.1986 REMARK 3 S TENSOR REMARK 3 S11: -0.0557 S12: -0.5499 S13: -0.0207 REMARK 3 S21: 0.6800 S22: -0.0098 S23: 0.6636 REMARK 3 S31: -0.0760 S32: -0.4388 S33: 0.0655 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 139 B 180 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7403 -20.8241 16.5776 REMARK 3 T TENSOR REMARK 3 T11: 0.1651 T22: 0.1757 REMARK 3 T33: 0.1876 T12: 0.0271 REMARK 3 T13: 0.0031 T23: 0.0508 REMARK 3 L TENSOR REMARK 3 L11: 1.6985 L22: 0.2101 REMARK 3 L33: 6.8958 L12: 0.1901 REMARK 3 L13: -1.5187 L23: 0.8525 REMARK 3 S TENSOR REMARK 3 S11: 0.0799 S12: -0.2885 S13: 0.1876 REMARK 3 S21: 0.3038 S22: -0.0098 S23: 0.1278 REMARK 3 S31: -0.0373 S32: 0.0003 S33: -0.0701 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2Y9M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1290047387. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9334 REMARK 200 MONOCHROMATOR : DIAMOND 111 REMARK 200 OPTICS : DIAMOND 111 REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11039 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 34.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW, AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: A 4 WAVELENGTH MAD DATA SET WAS COLLECTED AND THE MODEL REMARK 200 FROM THIS DATASET WAS USED AS MR MODEL FOR THE NATIVE DATASET REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8.0 % (V/V) ETHYLENE GLYCOL, 14.0 % REMARK 280 (W/V) POLYETHYLENE GLYCOL, 0.1 M HEPES PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 69.66400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.59700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 69.66400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.59700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 15 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 12 REMARK 465 ALA A 13 REMARK 465 ILE A 180 REMARK 465 ASN A 181 REMARK 465 ASN A 182 REMARK 465 HIS A 183 REMARK 465 GLY B 51 REMARK 465 ALA B 52 REMARK 465 MET B 53 REMARK 465 GLU B 54 REMARK 465 ASN B 55 REMARK 465 LYS B 56 REMARK 465 SER B 145 REMARK 465 SER B 146 REMARK 465 GLY B 147 REMARK 465 GLY B 148 REMARK 465 SER B 149 REMARK 465 ASP B 150 REMARK 465 ALA B 151 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 14 N REMARK 470 ASP A 16 CG OD1 OD2 REMARK 470 ARG A 44 CD NE CZ NH1 NH2 REMARK 470 ARG A 139 NE CZ NH1 NH2 REMARK 470 LYS B 57 CE NZ REMARK 470 GLU B 79 CD OE1 OE2 REMARK 470 GLN B 100 CG CD OE1 NE2 REMARK 470 GLU B 156 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 21 O PRO A 126 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 118 -0.69 -59.96 REMARK 500 PRO A 126 -9.24 -58.73 REMARK 500 ASP A 129 -169.69 -121.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1181 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1181 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1182 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Y9O RELATED DB: PDB REMARK 900 PEX4P-PEX22P MUTANT I STRUCTURE REMARK 900 RELATED ID: 2Y9P RELATED DB: PDB REMARK 900 PEX4P-PEX22P MUTANT II STRUCTURE REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE 15 IS MUTATED FROM SERINE TO ALANINE TO AID REMARK 999 CLONING. THE N-TERMINAL GLYCINE IS LEFT OVER FROM THE TAG REMARK 999 THE N-TERMINAL GLYCINE AND ALANINE ARE LEFT OVER FROM THE REMARK 999 TAG DBREF 2Y9M A 15 183 UNP P29340 UBCX_YEAST 15 183 DBREF 2Y9M B 54 180 UNP P39718 PEX22_YEAST 54 180 SEQADV 2Y9M GLY A 12 UNP P29340 EXPRESSION TAG SEQADV 2Y9M ALA A 13 UNP P29340 EXPRESSION TAG SEQADV 2Y9M MET A 14 UNP P29340 EXPRESSION TAG SEQADV 2Y9M ALA A 15 UNP P29340 SER 15 ENGINEERED MUTATION SEQADV 2Y9M GLY B 51 UNP P39718 EXPRESSION TAG SEQADV 2Y9M ALA B 52 UNP P39718 EXPRESSION TAG SEQADV 2Y9M MET B 53 UNP P39718 EXPRESSION TAG SEQRES 1 A 172 GLY ALA MET ALA ASP THR CYS MET SER ARG ILE VAL LYS SEQRES 2 A 172 GLU TYR LYS VAL ILE LEU LYS THR LEU ALA SER ASP ASP SEQRES 3 A 172 PRO ILE ALA ASN PRO TYR ARG GLY ILE ILE GLU SER LEU SEQRES 4 A 172 ASN PRO ILE ASP GLU THR ASP LEU SER LYS TRP GLU ALA SEQRES 5 A 172 ILE ILE SER GLY PRO SER ASP THR PRO TYR GLU ASN HIS SEQRES 6 A 172 GLN PHE ARG ILE LEU ILE GLU VAL PRO SER SER TYR PRO SEQRES 7 A 172 MET ASN PRO PRO LYS ILE SER PHE MET GLN ASN ASN ILE SEQRES 8 A 172 LEU HIS CYS ASN VAL LYS SER ALA THR GLY GLU ILE CYS SEQRES 9 A 172 LEU ASN ILE LEU LYS PRO GLU GLU TRP THR PRO VAL TRP SEQRES 10 A 172 ASP LEU LEU HIS CYS VAL HIS ALA VAL TRP ARG LEU LEU SEQRES 11 A 172 ARG GLU PRO VAL CYS ASP SER PRO LEU ASP VAL ASP ILE SEQRES 12 A 172 GLY ASN ILE ILE ARG CYS GLY ASP MET SER ALA TYR GLN SEQRES 13 A 172 GLY ILE VAL LYS TYR PHE LEU ALA GLU ARG GLU ARG ILE SEQRES 14 A 172 ASN ASN HIS SEQRES 1 B 130 GLY ALA MET GLU ASN LYS LYS ALA ARG LYS SER LYS CYS SEQRES 2 B 130 ILE ILE MET SER LYS SER ILE GLN GLY LEU PRO ILE LYS SEQRES 3 B 130 TRP GLU GLU TYR ALA ALA ASP GLU VAL VAL LEU LEU VAL SEQRES 4 B 130 PRO THR SER HIS THR ASP GLY SER MET LYS GLN ALA ILE SEQRES 5 B 130 GLY ASP ALA PHE ARG LYS THR LYS ASN GLU HIS LYS ILE SEQRES 6 B 130 ILE TYR CYS ASP SER MET ASP GLY LEU TRP SER CYS VAL SEQRES 7 B 130 ARG ARG LEU GLY LYS PHE GLN CYS ILE LEU ASN SER ARG SEQRES 8 B 130 ASP PHE THR SER SER GLY GLY SER ASP ALA ALA VAL VAL SEQRES 9 B 130 PRO GLU ASP ILE GLY ARG PHE VAL LYS PHE VAL VAL ASP SEQRES 10 B 130 SER ASP VAL GLU ASP VAL LEU ILE ASP THR LEU CYS ASN HET EDO A1180 4 HET EDO A1181 4 HET EDO B1181 4 HET EDO B1182 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 HOH *9(H2 O) HELIX 1 1 ALA A 15 ALA A 34 1 20 HELIX 2 2 LEU A 116 LYS A 120 5 5 HELIX 3 3 ASP A 129 GLU A 143 1 15 HELIX 4 4 ASP A 151 ARG A 159 1 9 HELIX 5 5 ASP A 162 ARG A 179 1 18 HELIX 6 6 SER B 67 GLY B 72 1 6 HELIX 7 7 LYS B 76 TYR B 80 5 5 HELIX 8 8 LYS B 99 LYS B 108 1 10 HELIX 9 9 ASN B 111 HIS B 113 5 3 HELIX 10 10 SER B 120 GLY B 132 1 13 HELIX 11 11 ASN B 139 PHE B 143 5 5 HELIX 12 12 ASP B 157 PHE B 161 5 5 HELIX 13 13 VAL B 170 ASN B 180 1 11 SHEET 1 AA 4 ILE A 47 PRO A 52 0 SHEET 2 AA 4 LYS A 60 SER A 66 -1 O GLU A 62 N ASN A 51 SHEET 3 AA 4 GLN A 77 GLU A 83 -1 O PHE A 78 N ILE A 65 SHEET 4 AA 4 LYS A 94 PHE A 97 -1 O LYS A 94 N GLU A 83 SHEET 1 BA 5 ILE B 115 CYS B 118 0 SHEET 2 BA 5 VAL B 85 PRO B 90 1 O LEU B 87 N ILE B 116 SHEET 3 BA 5 LYS B 62 ILE B 65 1 O LYS B 62 N VAL B 86 SHEET 4 BA 5 GLN B 135 LEU B 138 1 O GLN B 135 N CYS B 63 SHEET 5 BA 5 PHE B 164 ASP B 167 1 O PHE B 164 N CYS B 136 SSBOND 1 CYS A 105 CYS A 146 1555 1555 2.03 CISPEP 1 TYR A 88 PRO A 89 0 1.59 SITE 1 AC1 4 GLN A 77 ASN A 101 ARG A 177 HOH A2006 SITE 1 AC2 3 SER B 69 GLY B 72 GLU B 171 SITE 1 AC3 5 LEU A 150 ASP A 151 VAL A 152 ARG B 130 SITE 2 AC3 5 ARG B 160 SITE 1 AC4 5 GLN A 99 THR A 111 VAL B 165 VAL B 166 SITE 2 AC4 5 ASP B 167 CRYST1 139.328 43.194 60.474 90.00 100.62 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007177 0.000000 0.001346 0.00000 SCALE2 0.000000 0.023151 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016824 0.00000