HEADER LIGASE/TRANSPORT PROTEIN 16-FEB-11 2Y9O OBSLTE 17-JUL-13 2Y9O 4BWF TITLE PEX4P-PEX22P MUTANT I STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2-21 KDA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBC DOMAIN, RESIDUES 15-183; COMPND 5 SYNONYM: PEX4P, PEROXIN-4, UBIQUITIN CARRIER PROTEIN, COMPND 6 UBIQUITIN-PROTEIN LIGASE; COMPND 7 EC: 6.3.2.19; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PEROXISOME ASSEMBLY PROTEIN 22; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: SOLUBLE DOMAIN, RESIDUES 54-180; COMPND 14 SYNONYM: PEX22P, PEROXIN-22; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PETM30; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCW250; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 14 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 15 ORGANISM_TAXID: 4932; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3; SOURCE 19 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_VECTOR: PETM30; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PCW218 KEYWDS LIGASE-TRANSPORT PROTEIN COMPLEX, UBIQUITIN CONJUGATING ENZYME, E2 KEYWDS 2 COMPLEX, PEROXISOMAL PROTEIN, ALPHA-BETA-ALPHA SANDWICH FOLD, E2 KEYWDS 3 CO-ACTIVATOR EXPDTA X-RAY DIFFRACTION AUTHOR C.WILLIAMS,M.VAN DEN BERG,S.PANJIKAR,B.DISTEL,M.WILMANNS REVDAT 2 17-JUL-13 2Y9O 1 OBSLTE REVDAT 1 29-FEB-12 2Y9O 0 JRNL AUTH C.WILLIAMS,M.VAN DEN BERG,S.PANJIKAR,B.DISTEL,M.WILMANNS JRNL TITL PEX4P-PEX22P STRUCTURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 97.07 REMARK 3 NUMBER OF REFLECTIONS : 5354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.21478 REMARK 3 R VALUE (WORKING SET) : 0.21108 REMARK 3 FREE R VALUE : 0.29281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.5 REMARK 3 FREE R VALUE TEST SET COUNT : 252 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.229 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.310 REMARK 3 REFLECTION IN BIN (WORKING SET) : 369 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.356 REMARK 3 BIN FREE R VALUE SET COUNT : 16 REMARK 3 BIN FREE R VALUE : 0.476 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2191 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.053 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01 REMARK 3 B22 (A**2) : -0.07 REMARK 3 B33 (A**2) : 0.06 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : -0.04 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.637 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.625 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.510 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 67.578 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.898 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.794 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2257 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3062 ; 1.321 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 6.221 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;34.360 ;24.945 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 377 ;17.376 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;19.366 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 353 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1673 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1419 ; 0.369 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2315 ; 0.701 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 838 ; 0.953 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 747 ; 1.674 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2Y9O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-11. REMARK 100 THE PDBE ID CODE IS EBI-47398. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.812 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : SI 111 REMARK 200 REMARK 200 DETECTOR TYPE : CCD (SX-165) REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5633 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.23 REMARK 200 RESOLUTION RANGE LOW (A) : 19.86 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 2.3 REMARK 200 R MERGE (I) : 0.14 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.50 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.1 REMARK 200 R MERGE FOR SHELL (I) : 0.49 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTY 2Y9M REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8.0 % (V/V) ETHYLENE GLYCOL, REMARK 280 14.0 % (W/V) POLYETHYLENE GLYCOL, 0.1 M HEPES PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 69.42900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.40100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 69.42900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.40100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 15 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 105 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 146 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 12 REMARK 465 ALA A 13 REMARK 465 ILE A 180 REMARK 465 ASN A 181 REMARK 465 ASN A 182 REMARK 465 HIS A 183 REMARK 465 GLY B 51 REMARK 465 ALA B 52 REMARK 465 MET B 53 REMARK 465 GLU B 54 REMARK 465 ASN B 55 REMARK 465 LYS B 56 REMARK 465 LYS B 57 REMARK 465 GLY B 147 REMARK 465 GLY B 148 REMARK 465 SER B 149 REMARK 465 ASP B 150 REMARK 465 ALA B 151 REMARK 465 ALA B 152 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 14 N CB CG SD CE REMARK 470 ARG A 44 CD NE CZ NH1 NH2 REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 ARG A 139 NE CZ NH1 NH2 REMARK 470 ARG A 142 CD NE CZ NH1 NH2 REMARK 470 ARG A 179 CD NE CZ NH1 NH2 REMARK 470 LYS B 60 CD CE NZ REMARK 470 LYS B 68 CD CE NZ REMARK 470 LYS B 76 CD CE NZ REMARK 470 GLU B 79 CD OE1 OE2 REMARK 470 GLN B 100 CG CD OE1 NE2 REMARK 470 LYS B 108 CD CE NZ REMARK 470 LYS B 110 CG CD CE NZ REMARK 470 ARG B 141 CG CD NE CZ NH1 NH2 REMARK 470 SER B 146 O REMARK 470 GLU B 156 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 21 O PRO A 126 2.18 REMARK 500 OH TYR A 26 OE1 GLU A 55 2.13 REMARK 500 O PRO A 68 OG1 THR A 71 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 58 2.04 -65.74 REMARK 500 ASN A 100 52.02 70.85 REMARK 500 ILE A 118 4.16 -61.14 REMARK 500 LEU B 73 133.55 -39.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 146 ASP A 147 -144.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1181 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1184 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1181 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Y9M RELATED DB: PDB REMARK 900 PEX4P-PEX22P STRUCTURE REMARK 900 RELATED ID: 2Y9P RELATED DB: PDB REMARK 900 PEX4P-PEX22P MUTANT II STRUCTURE REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE 15 IS MUTATED FROM SERINE TO ALANINE TO AID REMARK 999 CLONING. THE MUTATIONS CYSTEINE 105 & 146 TO SERINE WERE REMARK 999 INTRODUCED TO TEST THE IMPORTANCE OF THE DISULPHIDE BOND. REMARK 999 THE N-TERMINAL GLYCINE IS LEFT OVER FROM THE TAG REMARK 999 THE N-TERMINAL GLYCINE AND ALANINE ARE LEFT OVER FROM THE TAG DBREF 2Y9O A 15 183 UNP P29340 UBCX_YEAST 15 183 DBREF 2Y9O B 54 180 UNP P39718 PEX22_YEAST 54 180 SEQADV 2Y9O GLY A 12 UNP P29340 EXPRESSION TAG SEQADV 2Y9O ALA A 13 UNP P29340 EXPRESSION TAG SEQADV 2Y9O MET A 14 UNP P29340 EXPRESSION TAG SEQADV 2Y9O ALA A 15 UNP P29340 SER 15 ENGINEERED MUTATION SEQADV 2Y9O SER A 105 UNP P29340 CYS 105 ENGINEERED MUTATION SEQADV 2Y9O SER A 146 UNP P29340 CYS 146 ENGINEERED MUTATION SEQADV 2Y9O GLY B 51 UNP P39718 EXPRESSION TAG SEQADV 2Y9O ALA B 52 UNP P39718 EXPRESSION TAG SEQADV 2Y9O MET B 53 UNP P39718 EXPRESSION TAG SEQRES 1 A 172 GLY ALA MET ALA ASP THR CYS MET SER ARG ILE VAL LYS SEQRES 2 A 172 GLU TYR LYS VAL ILE LEU LYS THR LEU ALA SER ASP ASP SEQRES 3 A 172 PRO ILE ALA ASN PRO TYR ARG GLY ILE ILE GLU SER LEU SEQRES 4 A 172 ASN PRO ILE ASP GLU THR ASP LEU SER LYS TRP GLU ALA SEQRES 5 A 172 ILE ILE SER GLY PRO SER ASP THR PRO TYR GLU ASN HIS SEQRES 6 A 172 GLN PHE ARG ILE LEU ILE GLU VAL PRO SER SER TYR PRO SEQRES 7 A 172 MET ASN PRO PRO LYS ILE SER PHE MET GLN ASN ASN ILE SEQRES 8 A 172 LEU HIS SER ASN VAL LYS SER ALA THR GLY GLU ILE CYS SEQRES 9 A 172 LEU ASN ILE LEU LYS PRO GLU GLU TRP THR PRO VAL TRP SEQRES 10 A 172 ASP LEU LEU HIS CYS VAL HIS ALA VAL TRP ARG LEU LEU SEQRES 11 A 172 ARG GLU PRO VAL SER ASP SER PRO LEU ASP VAL ASP ILE SEQRES 12 A 172 GLY ASN ILE ILE ARG CYS GLY ASP MET SER ALA TYR GLN SEQRES 13 A 172 GLY ILE VAL LYS TYR PHE LEU ALA GLU ARG GLU ARG ILE SEQRES 14 A 172 ASN ASN HIS SEQRES 1 B 130 GLY ALA MET GLU ASN LYS LYS ALA ARG LYS SER LYS CYS SEQRES 2 B 130 ILE ILE MET SER LYS SER ILE GLN GLY LEU PRO ILE LYS SEQRES 3 B 130 TRP GLU GLU TYR ALA ALA ASP GLU VAL VAL LEU LEU VAL SEQRES 4 B 130 PRO THR SER HIS THR ASP GLY SER MET LYS GLN ALA ILE SEQRES 5 B 130 GLY ASP ALA PHE ARG LYS THR LYS ASN GLU HIS LYS ILE SEQRES 6 B 130 ILE TYR CYS ASP SER MET ASP GLY LEU TRP SER CYS VAL SEQRES 7 B 130 ARG ARG LEU GLY LYS PHE GLN CYS ILE LEU ASN SER ARG SEQRES 8 B 130 ASP PHE THR SER SER GLY GLY SER ASP ALA ALA VAL VAL SEQRES 9 B 130 PRO GLU ASP ILE GLY ARG PHE VAL LYS PHE VAL VAL ASP SEQRES 10 B 130 SER ASP VAL GLU ASP VAL LEU ILE ASP THR LEU CYS ASN HET EDO A1180 4 HET EDO A1181 4 HET EDO A1183 4 HET EDO A1184 4 HET EDO A1185 4 HET EDO B1181 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 6(C2 H6 O2) FORMUL 4 HOH *7(H2 O) HELIX 1 1 ALA A 15 SER A 35 1 21 HELIX 2 2 LEU A 116 LYS A 120 5 5 HELIX 3 3 ASP A 129 GLU A 143 1 15 HELIX 4 4 ASP A 151 CYS A 160 1 10 HELIX 5 5 ASP A 162 ARG A 177 1 16 HELIX 6 6 SER B 67 LEU B 73 1 7 HELIX 7 7 TRP B 77 ALA B 82 1 6 HELIX 8 8 SER B 92 THR B 94 5 3 HELIX 9 9 LYS B 99 LYS B 108 1 10 HELIX 10 10 ASN B 111 HIS B 113 5 3 HELIX 11 11 SER B 120 GLY B 132 1 13 HELIX 12 12 ASN B 139 PHE B 143 5 5 HELIX 13 13 PRO B 155 PHE B 161 5 7 HELIX 14 14 VAL B 170 CYS B 179 1 10 SHEET 1 AA 4 ILE A 47 PRO A 52 0 SHEET 2 AA 4 LYS A 60 SER A 66 -1 O GLU A 62 N ASN A 51 SHEET 3 AA 4 GLN A 77 GLU A 83 -1 O PHE A 78 N ILE A 65 SHEET 4 AA 4 LYS A 94 PHE A 97 -1 O LYS A 94 N GLU A 83 SHEET 1 BA 5 ILE B 115 CYS B 118 0 SHEET 2 BA 5 VAL B 85 PRO B 90 1 O LEU B 87 N ILE B 116 SHEET 3 BA 5 LYS B 62 ILE B 65 1 O LYS B 62 N VAL B 86 SHEET 4 BA 5 GLN B 135 LEU B 138 1 O GLN B 135 N CYS B 63 SHEET 5 BA 5 PHE B 164 ASP B 167 1 O PHE B 164 N CYS B 136 CISPEP 1 TYR A 88 PRO A 89 0 5.41 SITE 1 AC1 3 PHE A 173 ARG B 130 LYS B 163 SITE 1 AC2 2 HIS A 132 HIS A 135 SITE 1 AC3 1 VAL B 154 SITE 1 AC4 2 LYS B 68 ASP B 169 CRYST1 138.858 42.802 60.540 90.00 100.14 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007202 0.000000 0.001288 0.00000 SCALE2 0.000000 0.023363 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016780 0.00000