HEADER HYDROLASE 17-FEB-11 2YA0 TITLE CATALYTIC MODULE OF THE MULTI-MODULAR GLYCOGEN-DEGRADING PNEUMOCOCCAL TITLE 2 VIRULENCE FACTOR SPUA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ALKALINE AMYLOPULLULANASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 437-1150; COMPND 5 SYNONYM: PULLULANASE SPUA GH13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 ATCC: BAA-334D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS HYDROLASE, GLYCOSIDE HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.LAMMERTS VAN BUEREN,E.FICKO-BLEAN,B.PLUVINAGE,J.H.HEHEMANN, AUTHOR 2 M.A.HIGGINS,L.DENG,A.D.OGUNNIYI,U.H.STROEHER,N.E.WARRY,R.D.BURKE, AUTHOR 3 M.CZJZEK,J.C.PATON,D.J.VOCADLO,A.B.BORASTON REVDAT 4 20-DEC-23 2YA0 1 REMARK LINK REVDAT 3 05-JUL-17 2YA0 1 REMARK REVDAT 2 31-JUL-13 2YA0 1 JRNL REVDAT 1 20-APR-11 2YA0 0 JRNL AUTH A.LAMMERTS VAN BUEREN,E.FICKO-BLEAN,B.PLUVINAGE,J.HEHEMANN, JRNL AUTH 2 M.A.HIGGINS,L.DENG,A.D.OGUNNIYI,U.H.STROEHER,N.EL WARRY, JRNL AUTH 3 R.D.BURKE,M.CZJZEK,J.C.PATON,D.J.VOCADLO,A.B.BORASTON JRNL TITL THE CONFORMATION AND FUNCTION OF A MULTIMODULAR JRNL TITL 2 GLYCOGEN-DEGRADING PNEUMOCOCCAL VIRULENCE FACTOR. JRNL REF STRUCTURE V. 19 640 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21565699 JRNL DOI 10.1016/J.STR.2011.03.001 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 57697 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3085 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4053 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.3640 REMARK 3 BIN FREE R VALUE SET COUNT : 231 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5678 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 838 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.36000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.406 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5868 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7955 ; 1.927 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 723 ; 6.423 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 294 ;36.468 ;24.694 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 987 ;14.459 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;19.020 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 849 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4533 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3566 ; 1.149 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5747 ; 1.844 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2302 ; 3.139 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2203 ; 4.750 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 2YA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1290047414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU R-AXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57697 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.730 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.64 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2FHF REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.59800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 GOL A 1697 O HOH A 2831 0.85 REMARK 500 O1 GOL A 1700 O HOH A 2836 1.30 REMARK 500 O HOH A 2487 O HOH A 2488 1.97 REMARK 500 OD1 ASP A 152 O HOH A 2282 2.06 REMARK 500 C1 GOL A 1697 O HOH A 2831 2.14 REMARK 500 O HOH A 2741 O HOH A 2747 2.16 REMARK 500 OD2 ASP A 377 O HOH A 2535 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 611 CD1 TYR A 611 CE1 0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 72 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 130 CB - CG - CD ANGL. DEV. = 19.1 DEGREES REMARK 500 ARG A 130 NE - CZ - NH1 ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG A 130 NE - CZ - NH2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG A 292 CG - CD - NE ANGL. DEV. = -16.1 DEGREES REMARK 500 ARG A 292 CD - NE - CZ ANGL. DEV. = 11.6 DEGREES REMARK 500 ARG A 292 NE - CZ - NH1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG A 292 NE - CZ - NH2 ANGL. DEV. = -10.9 DEGREES REMARK 500 LEU A 350 CB - CG - CD2 ANGL. DEV. = 12.1 DEGREES REMARK 500 ASP A 384 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 440 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 470 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 493 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 13 70.40 -155.81 REMARK 500 SER A 52 -37.99 -27.94 REMARK 500 TYR A 212 39.65 -86.16 REMARK 500 TYR A 274 -62.01 -135.89 REMARK 500 THR A 378 -83.58 -127.75 REMARK 500 LYS A 391 26.77 -149.66 REMARK 500 SER A 392 159.97 73.05 REMARK 500 ASN A 441 176.10 72.06 REMARK 500 ARG A 498 42.09 -84.84 REMARK 500 ARG A 580 51.46 -140.79 REMARK 500 HIS A 642 -16.94 -49.85 REMARK 500 ASP A 651 -157.32 -143.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1696 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 206 O REMARK 620 2 TYR A 208 O 83.0 REMARK 620 3 ASP A 537 OD1 80.2 107.7 REMARK 620 4 HOH A2106 O 130.1 140.9 99.3 REMARK 620 5 HOH A2332 O 82.0 83.1 157.8 82.2 REMARK 620 6 HOH A2372 O 70.9 152.8 75.7 61.1 86.0 REMARK 620 7 HOH A2676 O 159.4 82.8 90.0 69.1 110.9 124.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1701 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2545 O REMARK 620 2 HOH A2601 O 104.3 REMARK 620 3 HOH A2675 O 122.4 69.7 REMARK 620 N 1 2 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AE" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1696 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1697 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1698 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1699 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J44 RELATED DB: PDB REMARK 900 ALPHA-GLUCAN BINDING BY A STREPTOCOCCAL VIRULENCE FACTOR REMARK 900 RELATED ID: 2YA2 RELATED DB: PDB REMARK 900 CATALYTIC MODULE OF THE MULTI-MODULAR GLYCOGEN-DEGRADING REMARK 900 PNEUMOCOCCAL VIRULENCE FACTOR SPUA IN COMPLEX WITH AN INHIBITOR. REMARK 900 RELATED ID: 2YA1 RELATED DB: PDB REMARK 900 PRODUCT COMPLEX OF A MULTI-MODULAR GLYCOGEN-DEGRADING PNEUMOCOCCAL REMARK 900 VIRULENCE FACTOR SPUA DBREF 2YA0 A -18 695 UNP Q97SQ7 Q97SQ7_STRPN 437 1150 SEQADV 2YA0 ASN A 499 UNP Q97SQ7 ASP 954 CONFLICT SEQADV 2YA0 ARG A 503 UNP Q97SQ7 LYS 958 CONFLICT SEQRES 1 A 714 SER TRP ARG LEU LYS ASP GLU THR TYR SER TYR ASP GLY SEQRES 2 A 714 LYS LEU GLY ALA ASP LEU LYS GLU GLU GLY LYS GLN VAL SEQRES 3 A 714 ASP LEU THR LEU TRP SER PRO SER ALA ASP LYS VAL SER SEQRES 4 A 714 VAL VAL VAL TYR ASP LYS ASN ASP PRO ASP LYS VAL VAL SEQRES 5 A 714 GLY THR VAL ALA LEU GLU LYS GLY GLU ARG GLY THR TRP SEQRES 6 A 714 LYS GLN THR LEU ASP SER THR ASN LYS LEU GLY ILE THR SEQRES 7 A 714 ASP PHE THR GLY TYR TYR TYR GLN TYR GLN ILE GLU ARG SEQRES 8 A 714 GLN GLY LYS THR VAL LEU ALA LEU ASP PRO TYR ALA LYS SEQRES 9 A 714 SER LEU ALA ALA TRP ASN SER ASP ASP SER LYS ILE ASP SEQRES 10 A 714 ASP ALA HIS LYS VAL ALA LYS ALA ALA PHE VAL ASP PRO SEQRES 11 A 714 ALA LYS LEU GLY PRO GLN ASP LEU THR TYR GLY LYS ILE SEQRES 12 A 714 HIS ASN PHE LYS THR ARG GLU ASP ALA VAL ILE TYR GLU SEQRES 13 A 714 ALA HIS VAL ARG ASP PHE THR SER ASP PRO ALA ILE ALA SEQRES 14 A 714 LYS ASP LEU THR LYS PRO PHE GLY THR PHE GLU ALA PHE SEQRES 15 A 714 ILE GLU LYS LEU ASP TYR LEU LYS ASP LEU GLY VAL THR SEQRES 16 A 714 HIS ILE GLN LEU LEU PRO VAL LEU SER TYR TYR PHE VAL SEQRES 17 A 714 ASN GLU LEU LYS ASN HIS GLU ARG LEU SER ASP TYR ALA SEQRES 18 A 714 SER SER ASN SER ASN TYR ASN TRP GLY TYR ASP PRO GLN SEQRES 19 A 714 ASN TYR PHE SER LEU THR GLY MET TYR SER SER ASP PRO SEQRES 20 A 714 LYS ASN PRO GLU LYS ARG ILE ALA GLU PHE LYS ASN LEU SEQRES 21 A 714 ILE ASN GLU ILE HIS LYS ARG GLY MET GLY ALA ILE LEU SEQRES 22 A 714 ASP VAL VAL TYR ASN HIS THR ALA LYS VAL ASP LEU PHE SEQRES 23 A 714 GLU ASP LEU GLU PRO ASN TYR TYR HIS PHE MET ASP ALA SEQRES 24 A 714 ASP GLY THR PRO ARG THR SER PHE GLY GLY GLY ARG LEU SEQRES 25 A 714 GLY THR THR HIS HIS MET THR LYS ARG LEU LEU ILE ASP SEQRES 26 A 714 SER ILE LYS TYR LEU VAL ASP THR TYR LYS VAL ASP GLY SEQRES 27 A 714 PHE ARG PHE ASP MET MET GLY ASP HIS ASP ALA ALA SER SEQRES 28 A 714 ILE GLU GLU ALA TYR LYS ALA ALA ARG ALA LEU ASN PRO SEQRES 29 A 714 ASN LEU ILE MET LEU GLY GLU GLY TRP ARG THR TYR ALA SEQRES 30 A 714 GLY ASP GLU ASN MET PRO THR LYS ALA ALA ASP GLN ASP SEQRES 31 A 714 TRP MET LYS HIS THR ASP THR VAL ALA VAL PHE SER ASP SEQRES 32 A 714 ASP ILE ARG ASN ASN LEU LYS SER GLY TYR PRO ASN GLU SEQRES 33 A 714 GLY GLN PRO ALA PHE ILE THR GLY GLY LYS ARG ASP VAL SEQRES 34 A 714 ASN THR ILE PHE LYS ASN LEU ILE ALA GLN PRO THR ASN SEQRES 35 A 714 PHE GLU ALA ASP SER PRO GLY ASP VAL ILE GLN TYR ILE SEQRES 36 A 714 ALA ALA HIS ASP ASN LEU THR LEU PHE ASP ILE ILE ALA SEQRES 37 A 714 GLN SER ILE LYS LYS ASP PRO SER LYS ALA GLU ASN TYR SEQRES 38 A 714 ALA GLU ILE HIS ARG ARG LEU ARG LEU GLY ASN LEU MET SEQRES 39 A 714 VAL LEU THR ALA GLN GLY THR PRO PHE ILE HIS SER GLY SEQRES 40 A 714 GLN GLU TYR GLY ARG THR LYS GLN PHE ARG ASN PRO ALA SEQRES 41 A 714 TYR ARG THR PRO VAL ALA GLU ASP LYS VAL PRO ASN LYS SEQRES 42 A 714 SER HIS LEU LEU ARG ASP LYS ASP GLY ASN PRO PHE ASP SEQRES 43 A 714 TYR PRO TYR PHE ILE HIS ASP SER TYR ASP SER SER ASP SEQRES 44 A 714 ALA VAL ASN LYS PHE ASP TRP THR LYS ALA THR ASP GLY SEQRES 45 A 714 LYS ALA TYR PRO GLU ASN VAL LYS SER ARG ASP TYR MET SEQRES 46 A 714 LYS GLY LEU ILE ALA LEU ARG GLN SER THR ASP ALA PHE SEQRES 47 A 714 ARG LEU LYS SER LEU GLN ASP ILE LYS ASP ARG VAL HIS SEQRES 48 A 714 LEU ILE THR VAL PRO GLY GLN ASN GLY VAL GLU LYS GLU SEQRES 49 A 714 ASP VAL VAL ILE GLY TYR GLN ILE THR ALA PRO ASN GLY SEQRES 50 A 714 ASP ILE TYR ALA VAL PHE VAL ASN ALA ASP GLU LYS ALA SEQRES 51 A 714 ARG GLU PHE ASN LEU GLY THR ALA PHE ALA HIS LEU ARG SEQRES 52 A 714 ASN ALA GLU VAL LEU ALA ASP GLU ASN GLN ALA GLY PRO SEQRES 53 A 714 VAL GLY ILE ALA ASN PRO LYS GLY LEU GLU TRP THR GLU SEQRES 54 A 714 LYS GLY LEU LYS LEU ASN ALA LEU THR ALA THR VAL LEU SEQRES 55 A 714 ARG VAL SER GLN ASN GLY THR SER HIS GLU SER THR HET CA A1696 1 HET GOL A1697 6 HET GOL A1698 6 HET GOL A1699 6 HET GOL A1700 6 HET NA A1701 1 HET NA A1702 1 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA CA 2+ FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 NA 2(NA 1+) FORMUL 9 HOH *838(H2 O) HELIX 1 1 SER A -18 SER A -9 1 10 HELIX 2 2 SER A 92 SER A 95 5 4 HELIX 3 3 ASP A 98 LYS A 102 5 5 HELIX 4 4 ASP A 110 LEU A 114 5 5 HELIX 5 5 THR A 129 ALA A 133 5 5 HELIX 6 6 HIS A 139 SER A 145 1 7 HELIX 7 7 ASP A 146 ALA A 150 5 5 HELIX 8 8 THR A 159 GLU A 165 1 7 HELIX 9 9 LYS A 166 GLY A 174 1 9 HELIX 10 10 GLU A 191 ASN A 194 5 4 HELIX 11 11 GLU A 232 ARG A 248 1 17 HELIX 12 12 VAL A 264 ASP A 269 1 6 HELIX 13 13 HIS A 297 LYS A 316 1 20 HELIX 14 14 MET A 324 HIS A 328 5 5 HELIX 15 15 ASP A 329 ASN A 344 1 16 HELIX 16 16 ASP A 369 THR A 376 5 8 HELIX 17 17 SER A 383 SER A 392 1 10 HELIX 18 18 VAL A 410 ILE A 418 1 9 HELIX 19 19 SER A 428 GLY A 430 5 3 HELIX 20 20 THR A 443 LYS A 453 1 11 HELIX 21 21 LYS A 458 ALA A 479 1 22 HELIX 22 22 ASN A 499 ARG A 503 5 5 HELIX 23 23 ALA A 507 VAL A 511 5 5 HELIX 24 24 SER A 539 LYS A 544 1 6 HELIX 25 25 ASP A 546 ASP A 552 1 7 HELIX 26 26 TYR A 556 SER A 575 1 20 HELIX 27 27 THR A 576 LEU A 581 5 6 HELIX 28 28 SER A 583 ARG A 590 1 8 HELIX 29 29 PHE A 640 ALA A 646 5 7 HELIX 30 30 SER A 686 THR A 690 5 5 SHEET 1 AA 4 GLY A -3 LYS A 1 0 SHEET 2 AA 4 GLN A 6 TRP A 12 -1 O GLN A 6 N LYS A 1 SHEET 3 AA 4 THR A 45 LEU A 50 -1 O TRP A 46 N LEU A 11 SHEET 4 AA 4 GLU A 39 LYS A 40 -1 O GLU A 39 N LYS A 47 SHEET 1 AB 4 VAL A 32 ALA A 37 0 SHEET 2 AB 4 LYS A 18 TYR A 24 -1 O VAL A 21 N VAL A 36 SHEET 3 AB 4 TYR A 65 ARG A 72 -1 O TYR A 65 N TYR A 24 SHEET 4 AB 4 LYS A 75 ALA A 79 -1 O LYS A 75 N ARG A 72 SHEET 1 AC 5 VAL A 32 ALA A 37 0 SHEET 2 AC 5 LYS A 18 TYR A 24 -1 O VAL A 21 N VAL A 36 SHEET 3 AC 5 TYR A 65 ARG A 72 -1 O TYR A 65 N TYR A 24 SHEET 4 AC 5 ALA A 106 ALA A 107 -1 O ALA A 106 N TYR A 66 SHEET 5 AC 5 SER A 86 LEU A 87 -1 O SER A 86 N ALA A 107 SHEET 1 AD 2 LYS A 75 ALA A 79 0 SHEET 2 AD 2 TYR A 65 ARG A 72 -1 O TYR A 68 N ALA A 79 SHEET 1 AE 9 ILE A 135 ALA A 138 0 SHEET 2 AE 9 HIS A 177 LEU A 180 1 O HIS A 177 N TYR A 136 SHEET 3 AE 9 GLY A 251 VAL A 256 1 O GLY A 251 N ILE A 178 SHEET 4 AE 9 GLY A 319 PHE A 322 1 O GLY A 319 N LEU A 254 SHEET 5 AE 9 ILE A 348 GLY A 351 1 O ILE A 348 N PHE A 320 SHEET 6 AE 9 ALA A 380 PHE A 382 1 O ALA A 380 N GLY A 351 SHEET 7 AE 9 VAL A 432 GLN A 434 1 N ILE A 433 O VAL A 381 SHEET 8 AE 9 THR A 482 HIS A 486 1 O THR A 482 N GLN A 434 SHEET 9 AE 9 ILE A 135 ALA A 138 1 O ILE A 135 N ILE A 485 SHEET 1 AF 2 THR A 286 SER A 287 0 SHEET 2 AF 2 GLY A 290 GLY A 291 -1 O GLY A 290 N SER A 287 SHEET 1 AG 2 ARG A 408 ASP A 409 0 SHEET 2 AG 2 GLU A 605 ASP A 606 -1 O ASP A 606 N ARG A 408 SHEET 1 AH 2 SER A 515 ARG A 519 0 SHEET 2 AH 2 PRO A 525 ILE A 532 -1 N PHE A 526 O LEU A 518 SHEET 1 AI 5 VAL A 591 LEU A 593 0 SHEET 2 AI 5 VAL A 608 THR A 614 -1 O GLN A 612 N HIS A 592 SHEET 3 AI 5 ILE A 620 ASN A 626 -1 O TYR A 621 N ILE A 613 SHEET 4 AI 5 THR A 679 VAL A 685 -1 O THR A 679 N ASN A 626 SHEET 5 AI 5 GLU A 647 ALA A 650 -1 O GLU A 647 N ARG A 684 SHEET 1 AJ 3 ARG A 632 ASN A 635 0 SHEET 2 AJ 3 GLY A 672 LEU A 675 -1 O LEU A 673 N PHE A 634 SHEET 3 AJ 3 LEU A 666 TRP A 668 -1 O GLU A 667 N LYS A 674 LINK O SER A 206 CA CA A1696 1555 1555 2.38 LINK O TYR A 208 CA CA A1696 1555 1555 2.42 LINK OD1 ASP A 537 CA CA A1696 1555 1555 2.41 LINK CA CA A1696 O HOH A2106 1555 1555 2.50 LINK CA CA A1696 O HOH A2332 1555 1555 2.49 LINK CA CA A1696 O HOH A2372 1555 1555 2.51 LINK CA CA A1696 O HOH A2676 1555 1555 2.40 LINK NA NA A1701 O HOH A2545 1555 1555 3.10 LINK NA NA A1701 O HOH A2601 1555 1555 3.17 LINK NA NA A1701 O HOH A2675 1555 1555 2.96 CISPEP 1 TYR A 394 PRO A 395 0 -5.47 SITE 1 AC1 7 SER A 206 TYR A 208 ASP A 537 HOH A2106 SITE 2 AC1 7 HOH A2332 HOH A2372 HOH A2676 SITE 1 AC2 8 TYR A 212 ASP A 534 ASN A 688 GLY A 689 SITE 2 AC2 8 THR A 690 HIS A 692 HOH A2381 HOH A2831 SITE 1 AC3 6 THR A 129 ARG A 130 GLU A 131 SER A 428 SITE 2 AC3 6 HOH A2587 HOH A2832 SITE 1 AC4 8 ASP A 30 ALA A 89 ASP A 94 HIS A 101 SITE 2 AC4 8 LEU A 192 HOH A2833 HOH A2834 HOH A2835 SITE 1 AC5 11 SER A 287 PHE A 288 ARG A 292 MET A 324 SITE 2 AC5 11 GLN A 687 THR A 690 THR A 695 HOH A2457 SITE 3 AC5 11 HOH A2836 HOH A2837 HOH A2838 SITE 1 AC6 4 ASN A 441 LEU A 442 ILE A 447 HOH A2675 SITE 1 AC7 4 THR A 443 LEU A 444 HIS A 486 GLN A 489 CRYST1 57.574 75.196 87.038 90.00 97.31 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017369 0.000000 0.002228 0.00000 SCALE2 0.000000 0.013299 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011583 0.00000