HEADER HYDROLASE 17-FEB-11 2YA2 TITLE CATALYTIC MODULE OF THE MULTI-MODULAR GLYCOGEN-DEGRADING PNEUMOCOCCAL TITLE 2 VIRULENCE FACTOR SPUA IN COMPLEX WITH AN INHIBITOR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ALKALINE AMYLOPULLULANASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 436-1143; COMPND 5 SYNONYM: PULLULANASE SPUA GH13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 ATCC: BAA-334D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS HYDROLASE, GLYCOSIDE HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.LAMMERTS VAN BUEREN,E.FICKO-BLEAN,B.PLUVINAGE,J.H.HEHEMANN, AUTHOR 2 M.A.HIGGINS,L.DENG,A.D.OGUNNIYI,U.H.STROEHER,N.E.WARRY,R.D.BURKE, AUTHOR 3 M.CZJZEK,J.C.PATON,D.J.VOCADLO,A.B.BORASTON REVDAT 4 29-JUL-20 2YA2 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 05-JUL-17 2YA2 1 REMARK REVDAT 2 31-JUL-13 2YA2 1 JRNL REVDAT 1 20-APR-11 2YA2 0 JRNL AUTH A.LAMMERTS VAN BUEREN,E.FICKO-BLEAN,B.PLUVINAGE,J.HEHEMANN, JRNL AUTH 2 M.A.HIGGINS,L.DENG,A.D.OGUNNIYI,U.H.STROEHER,N.EL WARRY, JRNL AUTH 3 R.D.BURKE,M.CZJZEK,J.C.PATON,D.J.VOCADLO,A.B.BORASTON JRNL TITL THE CONFORMATION AND FUNCTION OF A MULTIMODULAR JRNL TITL 2 GLYCOGEN-DEGRADING PNEUMOCOCCAL VIRULENCE FACTOR. JRNL REF STRUCTURE V. 19 640 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21565699 JRNL DOI 10.1016/J.STR.2011.03.001 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.9 REMARK 3 NUMBER OF REFLECTIONS : 25638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1359 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1935 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.4120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5636 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.861 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.312 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.193 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.237 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5792 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7852 ; 1.440 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 707 ; 6.547 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 289 ;38.084 ;24.671 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 969 ;16.666 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;18.561 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 846 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4465 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3522 ; 0.612 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5671 ; 1.129 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2270 ; 1.853 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2181 ; 2.903 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 2YA2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1290047417. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU R-AXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25638 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.14 REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.90150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 1 -167.87 -115.45 REMARK 500 GLU A 2 41.95 36.04 REMARK 500 SER A 13 72.21 -151.05 REMARK 500 ASP A 28 89.78 -151.53 REMARK 500 ARG A 43 60.53 33.72 REMARK 500 GLN A 73 57.80 35.85 REMARK 500 ALA A 89 129.95 -35.01 REMARK 500 LYS A 128 -53.46 -120.94 REMARK 500 VAL A 189 145.96 -175.29 REMARK 500 TYR A 212 35.94 -85.25 REMARK 500 TYR A 274 -51.42 -126.10 REMARK 500 MET A 324 60.57 37.42 REMARK 500 THR A 378 -86.17 -134.24 REMARK 500 LYS A 391 -158.15 -123.92 REMARK 500 ASP A 441 -176.55 75.33 REMARK 500 ARG A 498 47.71 -86.77 REMARK 500 THR A 595 82.48 -64.81 REMARK 500 ASN A 645 39.38 -93.10 REMARK 500 ASP A 651 -156.86 -144.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 686 GLN A 687 145.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 GLUCOSE (GLC): IS LINKED ALPHA 1-6 TO 1-DEOXYNOJIRIMYCIN REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1691 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 373 O REMARK 620 2 THR A 376 O 77.4 REMARK 620 3 ASP A 377 OD1 159.3 85.7 REMARK 620 4 ASP A 427 OD1 88.0 154.1 102.9 REMARK 620 5 ASP A 431 OD1 106.1 83.7 83.5 121.2 REMARK 620 6 ASP A 431 OD2 88.6 126.8 111.2 73.1 51.2 REMARK 620 7 HOH A2148 O 79.4 75.8 85.0 80.6 157.2 151.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1692 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2135 O REMARK 620 2 HOH A2154 O 62.6 REMARK 620 3 HOH A2157 O 105.5 135.3 REMARK 620 N 1 2 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AE" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YA0 RELATED DB: PDB REMARK 900 CATALYTIC MODULE OF THE MULTI-MODULAR GLYCOGEN-DEGRADING REMARK 900 PNEUMOCOCCAL VIRULENCE FACTOR SPUA REMARK 900 RELATED ID: 2J44 RELATED DB: PDB REMARK 900 ALPHA-GLUCAN BINDING BY A STREPTOCOCCAL VIRULENCE FACTOR REMARK 900 RELATED ID: 2YA1 RELATED DB: PDB REMARK 900 PRODUCT COMPLEX OF A MULTI-MODULAR GLYCOGEN-DEGRADING PNEUMOCOCCAL REMARK 900 VIRULENCE FACTOR SPUA DBREF 2YA2 A -19 688 UNP Q97SQ7 Q97SQ7_STRPN 436 1143 SEQADV 2YA2 ASP A 441 UNP Q97SQ7 ASN 896 CONFLICT SEQADV 2YA2 ASN A 499 UNP Q97SQ7 ASP 954 CONFLICT SEQADV 2YA2 ARG A 503 UNP Q97SQ7 LYS 958 CONFLICT SEQRES 1 A 708 THR SER TRP ARG LEU LYS ASP GLU THR TYR SER TYR ASP SEQRES 2 A 708 GLY LYS LEU GLY ALA ASP LEU LYS GLU GLU GLY LYS GLN SEQRES 3 A 708 VAL ASP LEU THR LEU TRP SER PRO SER ALA ASP LYS VAL SEQRES 4 A 708 SER VAL VAL VAL TYR ASP LYS ASN ASP PRO ASP LYS VAL SEQRES 5 A 708 VAL GLY THR VAL ALA LEU GLU LYS GLY GLU ARG GLY THR SEQRES 6 A 708 TRP LYS GLN THR LEU ASP SER THR ASN LYS LEU GLY ILE SEQRES 7 A 708 THR ASP PHE THR GLY TYR TYR TYR GLN TYR GLN ILE GLU SEQRES 8 A 708 ARG GLN GLY LYS THR VAL LEU ALA LEU ASP PRO TYR ALA SEQRES 9 A 708 LYS SER LEU ALA ALA TRP ASN SER ASP ASP SER LYS ILE SEQRES 10 A 708 ASP ASP ALA HIS LYS VAL ALA LYS ALA ALA PHE VAL ASP SEQRES 11 A 708 PRO ALA LYS LEU GLY PRO GLN ASP LEU THR TYR GLY LYS SEQRES 12 A 708 ILE HIS ASN PHE LYS THR ARG GLU ASP ALA VAL ILE TYR SEQRES 13 A 708 GLU ALA HIS VAL ARG ASP PHE THR SER ASP PRO ALA ILE SEQRES 14 A 708 ALA LYS ASP LEU THR LYS PRO PHE GLY THR PHE GLU ALA SEQRES 15 A 708 PHE ILE GLU LYS LEU ASP TYR LEU LYS ASP LEU GLY VAL SEQRES 16 A 708 THR HIS ILE GLN LEU LEU PRO VAL LEU SER TYR TYR PHE SEQRES 17 A 708 VAL ASN GLU LEU LYS ASN HIS GLU ARG LEU SER ASP TYR SEQRES 18 A 708 ALA SER SER ASN SER ASN TYR ASN TRP GLY TYR ASP PRO SEQRES 19 A 708 GLN ASN TYR PHE SER LEU THR GLY MET TYR SER SER ASP SEQRES 20 A 708 PRO LYS ASN PRO GLU LYS ARG ILE ALA GLU PHE LYS ASN SEQRES 21 A 708 LEU ILE ASN GLU ILE HIS LYS ARG GLY MET GLY ALA ILE SEQRES 22 A 708 LEU ASP VAL VAL TYR ASN HIS THR ALA LYS VAL ASP LEU SEQRES 23 A 708 PHE GLU ASP LEU GLU PRO ASN TYR TYR HIS PHE MET ASP SEQRES 24 A 708 ALA ASP GLY THR PRO ARG THR SER PHE GLY GLY GLY ARG SEQRES 25 A 708 LEU GLY THR THR HIS HIS MET THR LYS ARG LEU LEU ILE SEQRES 26 A 708 ASP SER ILE LYS TYR LEU VAL ASP THR TYR LYS VAL ASP SEQRES 27 A 708 GLY PHE ARG PHE ASP MET MET GLY ASP HIS ASP ALA ALA SEQRES 28 A 708 SER ILE GLU GLU ALA TYR LYS ALA ALA ARG ALA LEU ASN SEQRES 29 A 708 PRO ASN LEU ILE MET LEU GLY GLU GLY TRP ARG THR TYR SEQRES 30 A 708 ALA GLY ASP GLU ASN MET PRO THR LYS ALA ALA ASP GLN SEQRES 31 A 708 ASP TRP MET LYS HIS THR ASP THR VAL ALA VAL PHE SER SEQRES 32 A 708 ASP ASP ILE ARG ASN ASN LEU LYS SER GLY TYR PRO ASN SEQRES 33 A 708 GLU GLY GLN PRO ALA PHE ILE THR GLY GLY LYS ARG ASP SEQRES 34 A 708 VAL ASN THR ILE PHE LYS ASN LEU ILE ALA GLN PRO THR SEQRES 35 A 708 ASN PHE GLU ALA ASP SER PRO GLY ASP VAL ILE GLN TYR SEQRES 36 A 708 ILE ALA ALA HIS ASP ASP LEU THR LEU PHE ASP ILE ILE SEQRES 37 A 708 ALA GLN SER ILE LYS LYS ASP PRO SER LYS ALA GLU ASN SEQRES 38 A 708 TYR ALA GLU ILE HIS ARG ARG LEU ARG LEU GLY ASN LEU SEQRES 39 A 708 MET VAL LEU THR ALA GLN GLY THR PRO PHE ILE HIS SER SEQRES 40 A 708 GLY GLN GLU TYR GLY ARG THR LYS GLN PHE ARG ASN PRO SEQRES 41 A 708 ALA TYR ARG THR PRO VAL ALA GLU ASP LYS VAL PRO ASN SEQRES 42 A 708 LYS SER HIS LEU LEU ARG ASP LYS ASP GLY ASN PRO PHE SEQRES 43 A 708 ASP TYR PRO TYR PHE ILE HIS ASP SER TYR ASP SER SER SEQRES 44 A 708 ASP ALA VAL ASN LYS PHE ASP TRP THR LYS ALA THR ASP SEQRES 45 A 708 GLY LYS ALA TYR PRO GLU ASN VAL LYS SER ARG ASP TYR SEQRES 46 A 708 MET LYS GLY LEU ILE ALA LEU ARG GLN SER THR ASP ALA SEQRES 47 A 708 PHE ARG LEU LYS SER LEU GLN ASP ILE LYS ASP ARG VAL SEQRES 48 A 708 HIS LEU ILE THR VAL PRO GLY GLN ASN GLY VAL GLU LYS SEQRES 49 A 708 GLU ASP VAL VAL ILE GLY TYR GLN ILE THR ALA PRO ASN SEQRES 50 A 708 GLY ASP ILE TYR ALA VAL PHE VAL ASN ALA ASP GLU LYS SEQRES 51 A 708 ALA ARG GLU PHE ASN LEU GLY THR ALA PHE ALA HIS LEU SEQRES 52 A 708 ARG ASN ALA GLU VAL LEU ALA ASP GLU ASN GLN ALA GLY SEQRES 53 A 708 PRO VAL GLY ILE ALA ASN PRO LYS GLY LEU GLU TRP THR SEQRES 54 A 708 GLU LYS GLY LEU LYS LEU ASN ALA LEU THR ALA THR VAL SEQRES 55 A 708 LEU ARG VAL SER GLN ASN HET NOJ A1689 11 HET GLC A1690 11 HET CA A1691 1 HET NA A1692 1 HETNAM NOJ 1-DEOXYNOJIRIMYCIN HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETSYN NOJ MORANOLINE FORMUL 2 NOJ C6 H13 N O4 FORMUL 3 GLC C6 H12 O6 FORMUL 4 CA CA 2+ FORMUL 5 NA NA 1+ FORMUL 6 HOH *206(H2 O) HELIX 1 1 SER A -18 SER A -9 1 10 HELIX 2 2 GLU A 2 LYS A 5 5 4 HELIX 3 3 SER A 92 SER A 95 5 4 HELIX 4 4 ASP A 98 LYS A 102 5 5 HELIX 5 5 ASP A 110 LEU A 114 5 5 HELIX 6 6 THR A 129 ALA A 133 5 5 HELIX 7 7 ARG A 141 SER A 145 5 5 HELIX 8 8 ASP A 146 LEU A 153 5 8 HELIX 9 9 THR A 159 GLU A 165 1 7 HELIX 10 10 LYS A 166 GLY A 174 1 9 HELIX 11 11 GLU A 191 ASN A 194 5 4 HELIX 12 12 GLU A 232 ARG A 248 1 17 HELIX 13 13 VAL A 264 ASP A 269 1 6 HELIX 14 14 HIS A 297 LYS A 316 1 20 HELIX 15 15 MET A 324 HIS A 328 5 5 HELIX 16 16 ASP A 329 ASN A 344 1 16 HELIX 17 17 ASP A 369 THR A 376 5 8 HELIX 18 18 SER A 383 LYS A 391 1 9 HELIX 19 19 VAL A 410 ILE A 418 1 9 HELIX 20 20 SER A 428 GLY A 430 5 3 HELIX 21 21 THR A 443 LYS A 453 1 11 HELIX 22 22 LYS A 458 ALA A 479 1 22 HELIX 23 23 ASN A 499 ARG A 503 5 5 HELIX 24 24 ALA A 507 VAL A 511 5 5 HELIX 25 25 SER A 539 LYS A 544 1 6 HELIX 26 26 ASP A 546 ASP A 552 1 7 HELIX 27 27 TYR A 556 SER A 575 1 20 HELIX 28 28 SER A 583 ARG A 590 1 8 HELIX 29 29 PHE A 640 ARG A 644 5 5 SHEET 1 AA 4 GLY A -3 LYS A 1 0 SHEET 2 AA 4 GLN A 6 TRP A 12 -1 O GLN A 6 N LYS A 1 SHEET 3 AA 4 THR A 45 LEU A 50 -1 O TRP A 46 N LEU A 11 SHEET 4 AA 4 GLU A 39 LYS A 40 -1 O GLU A 39 N LYS A 47 SHEET 1 AB 4 VAL A 32 ALA A 37 0 SHEET 2 AB 4 LYS A 18 TYR A 24 -1 O VAL A 21 N VAL A 36 SHEET 3 AB 4 TYR A 65 ARG A 72 -1 O TYR A 65 N TYR A 24 SHEET 4 AB 4 LYS A 75 ALA A 79 -1 O LYS A 75 N ARG A 72 SHEET 1 AC 5 VAL A 32 ALA A 37 0 SHEET 2 AC 5 LYS A 18 TYR A 24 -1 O VAL A 21 N VAL A 36 SHEET 3 AC 5 TYR A 65 ARG A 72 -1 O TYR A 65 N TYR A 24 SHEET 4 AC 5 ALA A 106 ALA A 107 -1 O ALA A 106 N TYR A 66 SHEET 5 AC 5 SER A 86 LEU A 87 -1 O SER A 86 N ALA A 107 SHEET 1 AD 2 LYS A 75 ALA A 79 0 SHEET 2 AD 2 TYR A 65 ARG A 72 -1 O TYR A 68 N ALA A 79 SHEET 1 AE 9 ILE A 135 ALA A 138 0 SHEET 2 AE 9 HIS A 177 LEU A 180 1 O HIS A 177 N TYR A 136 SHEET 3 AE 9 GLY A 251 VAL A 256 1 O GLY A 251 N ILE A 178 SHEET 4 AE 9 GLY A 319 PHE A 322 1 O GLY A 319 N LEU A 254 SHEET 5 AE 9 ILE A 348 GLY A 351 1 O ILE A 348 N PHE A 320 SHEET 6 AE 9 ALA A 380 PHE A 382 1 O ALA A 380 N GLY A 351 SHEET 7 AE 9 VAL A 432 GLN A 434 1 N ILE A 433 O VAL A 381 SHEET 8 AE 9 THR A 482 HIS A 486 1 O THR A 482 N GLN A 434 SHEET 9 AE 9 ILE A 135 ALA A 138 1 O ILE A 135 N ILE A 485 SHEET 1 AF 2 THR A 286 SER A 287 0 SHEET 2 AF 2 GLY A 290 GLY A 291 -1 O GLY A 290 N SER A 287 SHEET 1 AG 2 ARG A 408 ASP A 409 0 SHEET 2 AG 2 GLU A 605 ASP A 606 -1 O ASP A 606 N ARG A 408 SHEET 1 AH 2 SER A 515 ARG A 519 0 SHEET 2 AH 2 PRO A 525 ILE A 532 -1 N PHE A 526 O LEU A 518 SHEET 1 AI 5 VAL A 591 LEU A 593 0 SHEET 2 AI 5 VAL A 608 THR A 614 -1 O GLN A 612 N HIS A 592 SHEET 3 AI 5 ILE A 620 ASN A 626 -1 O TYR A 621 N ILE A 613 SHEET 4 AI 5 THR A 679 VAL A 685 -1 O THR A 679 N ASN A 626 SHEET 5 AI 5 GLU A 647 ALA A 650 -1 O GLU A 647 N ARG A 684 SHEET 1 AJ 3 ARG A 632 ASN A 635 0 SHEET 2 AJ 3 GLY A 672 LEU A 675 -1 O LEU A 673 N PHE A 634 SHEET 3 AJ 3 LEU A 666 TRP A 668 -1 O GLU A 667 N LYS A 674 LINK O4 NOJ A1689 C1 GLC A1690 1555 1555 1.43 LINK O MET A 373 CA CA A1691 1555 1555 2.40 LINK O THR A 376 CA CA A1691 1555 1555 2.20 LINK OD1 ASP A 377 CA CA A1691 1555 1555 2.23 LINK OD1 ASP A 427 CA CA A1691 1555 1555 2.33 LINK OD1 ASP A 431 CA CA A1691 1555 1555 2.70 LINK OD2 ASP A 431 CA CA A1691 1555 1555 2.27 LINK CA CA A1691 O HOH A2148 1555 1555 2.28 LINK NA NA A1692 O HOH A2135 1555 1555 3.15 LINK NA NA A1692 O HOH A2154 1555 1555 3.20 LINK NA NA A1692 O HOH A2157 1555 1555 3.07 CISPEP 1 TYR A 394 PRO A 395 0 4.53 CRYST1 57.779 75.803 88.089 90.00 97.72 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017307 0.000000 0.002346 0.00000 SCALE2 0.000000 0.013192 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011456 0.00000