HEADER TRANSFERASE 23-FEB-11 2YAK TITLE STRUCTURE OF DEATH-ASSOCIATED PROTEIN KINASE 1 (DAPK1) IN TITLE 2 COMPLEX WITH A RUTHENIUM OCTASPORINE LIGAND (OSV) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEATH-ASSOCIATED PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AA, RESIDUES 1-285; COMPND 5 SYNONYM: HUMAN DAPK1, DAP KINASE 1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET151 KEYWDS TRANSFERASE, OCTAHEDRAL RUTHENIUM INHIBITORY COMPLEX, KINASE KEYWDS 2 INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR L.FENG,Y.GEISSELBRECHT,S.BLANCK,A.WILBUER,G.E.ATILLA-GOKCUMEN, AUTHOR 2 P.FILIPPAKOPOULOS,K.KRAELING,M.A.CELIK,K.HARMS,J.MAKSIMOSKA, AUTHOR 3 R.MARMORSTEIN,G.FRENKING,S.KNAPP,L.-O.ESSEN,E.MEGGERS REVDAT 1 27-APR-11 2YAK 0 JRNL AUTH L.FENG,Y.GEISSELBRECHT,S.BLANCK,A.WILBUER, JRNL AUTH 2 G.E.ATILLA-GOKCUMEN,P.FILIPPAKOPOULOS,K.KRAELING,M.A.CELIK, JRNL AUTH 3 K.HARMS,J.MAKSIMOSKA,R.MARMORSTEIN,G.FRENKING,S.KNAPP, JRNL AUTH 4 L.O.ESSEN,E.MEGGERS JRNL TITL STRUCTURALLY SOPHISTICATED OCTAHEDRAL METAL COMPLEXES AS JRNL TITL 2 HIGHLY SELECTIVE PROTEIN KINASE INHIBITORS. JRNL REF J.AM.CHEM.SOC. V. 133 5976 2011 JRNL REFN ISSN 0002-7863 JRNL PMID 21446733 JRNL DOI 10.1021/JA1112996 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.MAKSIMOSKA,L.FENG,K.HARMS,C.YI,J.KISSIL,R.MARMORSTEIN, REMARK 1 AUTH 2 E.MEGGERS REMARK 1 TITL TARGETING LARGE KINASE ACTIVE SITE WITH RIGID, BULKY REMARK 1 TITL 2 OCTAHEDRAL RUTHENIUM COMPLEXES. REMARK 1 REF J.AM.CHEM.SOC. V. 130 15764 2008 REMARK 1 REFN ISSN 0002-7863 REMARK 1 PMID 18973295 REMARK 1 DOI 10.1021/JA805555A REMARK 1 REFERENCE 2 REMARK 1 AUTH G.E.ATILLA-GOKCUMEN,N.PAGANO,C.STREU,J.MAKSIMOSKA, REMARK 1 AUTH 2 P.FILIPPAKOPOULOS,S.KNAPP,E.MEGGERS REMARK 1 TITL EXTREMELY TIGHT BINDING OF A RUTHENIUM COMPLEX TO GLYCOGEN REMARK 1 TITL 2 SYNTHASE KINASE 3. REMARK 1 REF CHEMBIOCHEM V. 9 2933 2008 REMARK 1 REFN ISSN 1439-4227 REMARK 1 PMID 19035373 REMARK 1 DOI 10.1002/CBIC.200800489 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 94.20 REMARK 3 NUMBER OF REFLECTIONS : 20406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.20146 REMARK 3 R VALUE (WORKING SET) : 0.19842 REMARK 3 FREE R VALUE : 0.26043 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.2 REMARK 3 FREE R VALUE TEST SET COUNT : 1109 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.200 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.257 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1504 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.320 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2234 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.688 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53 REMARK 3 B22 (A**2) : 0.71 REMARK 3 B33 (A**2) : -0.18 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.212 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.548 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2326 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1590 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3153 ; 1.824 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3876 ; 0.990 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 278 ; 6.269 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;37.596 ;24.643 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 410 ;17.449 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;21.266 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 348 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2553 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 463 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1385 ; 1.047 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 558 ; 0.224 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2241 ; 1.938 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 941 ; 2.830 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 911 ; 4.660 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): -10.9035 -22.5611 18.1223 REMARK 3 T TENSOR REMARK 3 T11: 0.1213 T22: 0.1012 REMARK 3 T33: 0.0473 T12: 0.0071 REMARK 3 T13: 0.0045 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.2640 L22: 0.4932 REMARK 3 L33: 1.4625 L12: -0.6276 REMARK 3 L13: -0.3185 L23: -0.3033 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: -0.0638 S13: -0.0871 REMARK 3 S21: 0.0286 S22: 0.0416 S23: 0.0813 REMARK 3 S31: 0.0257 S32: 0.0874 S33: -0.0695 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 75 A 278 REMARK 3 ORIGIN FOR THE GROUP (A): -24.9033 -4.6226 9.6531 REMARK 3 T TENSOR REMARK 3 T11: 0.0811 T22: 0.0830 REMARK 3 T33: 0.0844 T12: -0.0151 REMARK 3 T13: 0.0067 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.2452 L22: 0.7798 REMARK 3 L33: 0.4829 L12: -0.2595 REMARK 3 L13: -0.0543 L23: -0.0402 REMARK 3 S TENSOR REMARK 3 S11: 0.0498 S12: 0.0051 S13: 0.0201 REMARK 3 S21: 0.0110 S22: -0.0685 S23: 0.0139 REMARK 3 S31: -0.0769 S32: 0.0096 S33: 0.0186 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1279 A 1279 REMARK 3 ORIGIN FOR THE GROUP (A): -11.8980 -10.8378 16.8920 REMARK 3 T TENSOR REMARK 3 T11: 0.1922 T22: 0.2114 REMARK 3 T33: 0.0451 T12: 0.0342 REMARK 3 T13: 0.0021 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 9.8279 L22: 15.9870 REMARK 3 L33: 1.9357 L12: -9.5046 REMARK 3 L13: 0.5882 L23: 3.0246 REMARK 3 S TENSOR REMARK 3 S11: 0.6607 S12: -0.4069 S13: 0.4780 REMARK 3 S21: -0.9983 S22: -0.6927 S23: -0.5475 REMARK 3 S31: -0.1810 S32: -0.6237 S33: 0.0320 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. LOOPS AROUND ILE177 AND SER110 SHOW POOR REMARK 3 ELECTRON DENSITY. REMARK 4 REMARK 4 2YAK COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-FEB-11. REMARK 100 THE PDBE ID CODE IS EBI-47437. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : HORIZONTALLY SIDE REMARK 200 DIFFRACTING SILICON 111 REMARK 200 CRYSTAL REMARK 200 OPTICS : PT COATED SI MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD (MX-225) REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21538 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.20 REMARK 200 RESOLUTION RANGE LOW (A) : 24.53 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 5 REMARK 200 R MERGE (I) : 0.10 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.6 REMARK 200 R MERGE FOR SHELL (I) : 0.82 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: IN-HOUSE STRUCTURE OF DAPK1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 7.2, 7.5-10% PEG 6000. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.15000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.65000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.65000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.15000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 279 REMARK 465 THR A 280 REMARK 465 GLN A 281 REMARK 465 GLN A 282 REMARK 465 ALA A 283 REMARK 465 LEU A 284 REMARK 465 SER A 285 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 3 CG1 CG2 REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 GLU A 109 CG CD OE1 OE2 REMARK 470 LYS A 278 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 47 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 85 -166.38 -121.78 REMARK 500 GLU A 109 -125.48 -69.06 REMARK 500 LEU A 111 97.85 75.21 REMARK 500 ASP A 139 34.87 -151.13 REMARK 500 ASP A 161 86.45 66.83 REMARK 500 ASN A 176 129.46 57.77 REMARK 500 ILE A 177 -48.20 -137.92 REMARK 500 PHE A 178 95.83 47.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 OSV A1279 RU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 OSV A1279 NAK REMARK 620 2 OSV A1279 NAM 82.4 REMARK 620 3 OSV A1279 N 91.0 90.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OSV A1279 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JKK RELATED DB: PDB REMARK 900 2.4A X-RAY STRUCTURE OF TERNARY COMPLEX OF A CATALYTIC REMARK 900 DOMAIN OF DEATH-ASSOCIATED PROTEIN KINASE WITH ATP REMARK 900 ANALOGUE AND MG. REMARK 900 RELATED ID: 1P4F RELATED DB: PDB REMARK 900 DEATH ASSOCIATED PROTEIN KINASE CATALYTIC DOMAIN WITH REMARK 900 BOUNDINHIBITOR FRAGMENT REMARK 900 RELATED ID: 2Y0A RELATED DB: PDB REMARK 900 STRUCTURE OF DAPK1 CONSTRUCT RESIDUES 1-304 REMARK 900 RELATED ID: 2W4J RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF A DAP-KINASE 2-277 REMARK 900 RELATED ID: 2X0G RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF A DAP-KINASE CALMODULIN COMPLEX REMARK 900 RELATED ID: 2Y4V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN CALMODULIN IN COMPLEX WITH REMARK 900 A DAP KINASE-1 MUTANT (W305Y) PEPTIDE REMARK 900 RELATED ID: 2W4K RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF A DAP-KINASE 2-302 REMARK 900 RELATED ID: 1JKT RELATED DB: PDB REMARK 900 TETRAGONAL CRYSTAL FORM OF A CATALYTIC DOMAIN OF DEATH REMARK 900 -ASSOCIATED PROTEIN KINASE REMARK 900 RELATED ID: 1IG1 RELATED DB: PDB REMARK 900 1.8A X-RAY STRUCTURE OF TERNARY COMPLEX OF A REMARK 900 CATALYTICDOMAIN OF DEATH-ASSOCIATED PROTEIN KINASE WITH REMARK 900 ATPANALOGUE AND MN. REMARK 900 RELATED ID: 2XUU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DAP-KINASE 1 MUTANT REMARK 900 RELATED ID: 1JKL RELATED DB: PDB REMARK 900 1.6A X-RAY STRUCTURE OF BINARY COMPLEX OF A CATALYTIC REMARK 900 DOMAIN OF DEATH-ASSOCIATED PROTEIN KINASE WITH ATP ANALOGUE REMARK 900 RELATED ID: 1JKS RELATED DB: PDB REMARK 900 1.5A X-RAY STRUCTURE OF APO FORM OF A CATALYTIC REMARK 900 DOMAIN OFDEATH-ASSOCIATED PROTEIN KINASE REMARK 900 RELATED ID: 2XZS RELATED DB: PDB REMARK 900 DEATH ASSOCIATED PROTEIN KINASE 1 RESIDUES 1-312 REMARK 900 RELATED ID: 2Y4P RELATED DB: PDB REMARK 900 DIMERIC STRUCTURE OF DAPK-1 CATALYTIC DOMAIN DBREF 2YAK A 1 285 UNP P53355 DAPK1_HUMAN 1 285 SEQRES 1 A 285 MET THR VAL PHE ARG GLN GLU ASN VAL ASP ASP TYR TYR SEQRES 2 A 285 ASP THR GLY GLU GLU LEU GLY SER GLY GLN PHE ALA VAL SEQRES 3 A 285 VAL LYS LYS CYS ARG GLU LYS SER THR GLY LEU GLN TYR SEQRES 4 A 285 ALA ALA LYS PHE ILE LYS LYS ARG ARG THR LYS SER SER SEQRES 5 A 285 ARG ARG GLY VAL SER ARG GLU ASP ILE GLU ARG GLU VAL SEQRES 6 A 285 SER ILE LEU LYS GLU ILE GLN HIS PRO ASN VAL ILE THR SEQRES 7 A 285 LEU HIS GLU VAL TYR GLU ASN LYS THR ASP VAL ILE LEU SEQRES 8 A 285 ILE LEU GLU LEU VAL ALA GLY GLY GLU LEU PHE ASP PHE SEQRES 9 A 285 LEU ALA GLU LYS GLU SER LEU THR GLU GLU GLU ALA THR SEQRES 10 A 285 GLU PHE LEU LYS GLN ILE LEU ASN GLY VAL TYR TYR LEU SEQRES 11 A 285 HIS SER LEU GLN ILE ALA HIS PHE ASP LEU LYS PRO GLU SEQRES 12 A 285 ASN ILE MET LEU LEU ASP ARG ASN VAL PRO LYS PRO ARG SEQRES 13 A 285 ILE LYS ILE ILE ASP PHE GLY LEU ALA HIS LYS ILE ASP SEQRES 14 A 285 PHE GLY ASN GLU PHE LYS ASN ILE PHE GLY THR PRO GLU SEQRES 15 A 285 PHE VAL ALA PRO GLU ILE VAL ASN TYR GLU PRO LEU GLY SEQRES 16 A 285 LEU GLU ALA ASP MET TRP SER ILE GLY VAL ILE THR TYR SEQRES 17 A 285 ILE LEU LEU SER GLY ALA SER PRO PHE LEU GLY ASP THR SEQRES 18 A 285 LYS GLN GLU THR LEU ALA ASN VAL SER ALA VAL ASN TYR SEQRES 19 A 285 GLU PHE GLU ASP GLU TYR PHE SER ASN THR SER ALA LEU SEQRES 20 A 285 ALA LYS ASP PHE ILE ARG ARG LEU LEU VAL LYS ASP PRO SEQRES 21 A 285 LYS LYS ARG MET THR ILE GLN ASP SER LEU GLN HIS PRO SEQRES 22 A 285 TRP ILE LYS PRO LYS ASP THR GLN GLN ALA LEU SER HET OSV A1279 40 HETNAM OSV RUTHENIUM OCTASPORINE 4 FORMUL 2 OSV C27 H31 F N4 O3 RU S4 FORMUL 3 HOH *108(H2 O) HELIX 1 1 ASN A 8 TYR A 12 1 5 HELIX 2 2 SER A 57 LYS A 69 1 13 HELIX 3 3 GLU A 100 ALA A 106 1 7 HELIX 4 4 THR A 112 LEU A 133 1 22 HELIX 5 5 LYS A 141 GLU A 143 5 3 HELIX 6 6 THR A 180 VAL A 184 5 5 HELIX 7 7 ALA A 185 ASN A 190 1 6 HELIX 8 8 LEU A 196 GLY A 213 1 18 HELIX 9 9 THR A 221 VAL A 232 1 12 HELIX 10 10 GLU A 237 SER A 242 1 6 HELIX 11 11 SER A 245 LEU A 256 1 12 HELIX 12 12 ASP A 259 ARG A 263 5 5 HELIX 13 13 THR A 265 HIS A 272 1 8 SHEET 1 AA 5 TYR A 13 SER A 21 0 SHEET 2 AA 5 ALA A 25 GLU A 32 -1 O VAL A 27 N LEU A 19 SHEET 3 AA 5 GLN A 38 LYS A 45 -1 O TYR A 39 N CYS A 30 SHEET 4 AA 5 ASP A 88 LEU A 93 -1 O VAL A 89 N ILE A 44 SHEET 5 AA 5 LEU A 79 GLU A 84 -1 N HIS A 80 O ILE A 92 SHEET 1 AB 2 ILE A 135 ALA A 136 0 SHEET 2 AB 2 HIS A 166 LYS A 167 -1 O HIS A 166 N ALA A 136 SHEET 1 AC 2 ILE A 145 LEU A 147 0 SHEET 2 AC 2 ILE A 157 ILE A 159 -1 O LYS A 158 N MET A 146 SITE 1 AC1 15 LEU A 19 SER A 21 ALA A 25 VAL A 27 SITE 2 AC1 15 ALA A 40 LYS A 42 GLU A 64 ILE A 77 SITE 3 AC1 15 LEU A 91 LEU A 93 GLU A 94 VAL A 96 SITE 4 AC1 15 GLU A 143 ASP A 161 HOH A2064 CRYST1 50.300 77.800 111.300 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019881 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012853 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008985 0.00000