HEADER OXIDOREDUCTASE 23-FEB-11 2YAN TITLE CRYSTAL STRUCTURE OF THE SECOND GLUTAREDOXIN DOMAIN OF HUMAN TXNL2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAREDOXIN-3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GLUTAREDOXIN DOMAIN, RESIDUES 232-334; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.VOLLMAR,C.JOHANSSON,R.COCKING,J.R.C.MUNIZ,T.KROJER,C.ALLERSTON, AUTHOR 2 F.VON DELFT,C.BOUNTRA,C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS,U.OPPERMANN REVDAT 5 20-DEC-23 2YAN 1 REMARK LINK REVDAT 4 24-JAN-18 2YAN 1 JRNL REVDAT 3 05-DEC-12 2YAN 1 JRNL REVDAT 2 18-JAN-12 2YAN 1 REMARK HET HETNAM FORMUL REVDAT 2 2 1 LINK SITE HETATM REVDAT 1 30-NOV-11 2YAN 0 JRNL AUTH M.VOLLMAR,C.JOHANSSON,R.COCKING,J.R.C.MUNIZ,T.KROJER, JRNL AUTH 2 C.ALLERSTON,F.VON DELFT,C.BOUNTRA,C.H.ARROWSMITH,J.WEIGELT, JRNL AUTH 3 A.EDWARDS,U.OPPERMANN JRNL TITL CRYSTAL STRUCTURE OF THE SECOND GLUTAREDOXIN DOMAIN OF HUMAN JRNL TITL 2 TXNL2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 35624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1872 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2586 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1664 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 197 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.91000 REMARK 3 B22 (A**2) : 0.91000 REMARK 3 B33 (A**2) : -1.37000 REMARK 3 B12 (A**2) : 0.46000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.093 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1849 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1321 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2493 ; 1.484 ; 2.040 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3273 ; 0.879 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 239 ; 5.066 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;33.446 ;26.341 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 368 ;13.599 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;16.729 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 277 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2005 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 316 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1086 ; 0.863 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 444 ; 0.238 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1763 ; 1.496 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 763 ; 2.290 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 714 ; 3.762 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 230 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): 42.8197 -22.0290 21.4553 REMARK 3 T TENSOR REMARK 3 T11: 0.2696 T22: 0.1967 REMARK 3 T33: 0.2104 T12: -0.1408 REMARK 3 T13: -0.0557 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 4.3270 L22: 19.2708 REMARK 3 L33: 10.7716 L12: -1.6083 REMARK 3 L13: 2.1116 L23: -14.2671 REMARK 3 S TENSOR REMARK 3 S11: 0.1765 S12: -0.0980 S13: 0.6497 REMARK 3 S21: 0.1591 S22: -0.1032 S23: 0.2923 REMARK 3 S31: -0.0898 S32: 0.0254 S33: -0.0732 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 249 A 320 REMARK 3 ORIGIN FOR THE GROUP (A): 34.3091 -34.5821 23.5189 REMARK 3 T TENSOR REMARK 3 T11: 0.1102 T22: 0.1631 REMARK 3 T33: 0.1198 T12: -0.1015 REMARK 3 T13: -0.0061 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 3.0480 L22: 3.0313 REMARK 3 L33: 3.4308 L12: 0.7905 REMARK 3 L13: 0.1835 L23: -0.1216 REMARK 3 S TENSOR REMARK 3 S11: 0.1607 S12: -0.0945 S13: 0.2900 REMARK 3 S21: 0.3484 S22: -0.2304 S23: 0.2533 REMARK 3 S31: -0.2325 S32: -0.0149 S33: 0.0697 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 321 A 333 REMARK 3 ORIGIN FOR THE GROUP (A): 44.7673 -47.0778 25.1781 REMARK 3 T TENSOR REMARK 3 T11: 0.1755 T22: 0.3095 REMARK 3 T33: 0.2562 T12: 0.0206 REMARK 3 T13: -0.0636 T23: 0.0666 REMARK 3 L TENSOR REMARK 3 L11: 3.1952 L22: 24.7326 REMARK 3 L33: 16.3377 L12: 3.9554 REMARK 3 L13: 4.5759 L23: 5.6069 REMARK 3 S TENSOR REMARK 3 S11: 0.4463 S12: 0.0930 S13: -0.5976 REMARK 3 S21: 0.9522 S22: 0.0129 S23: -1.4512 REMARK 3 S31: 0.7461 S32: 0.9744 S33: -0.4592 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 230 B 248 REMARK 3 ORIGIN FOR THE GROUP (A): 43.9555 -39.2183 -11.1806 REMARK 3 T TENSOR REMARK 3 T11: 0.2286 T22: 0.2664 REMARK 3 T33: 0.1715 T12: -0.0347 REMARK 3 T13: -0.0633 T23: 0.0572 REMARK 3 L TENSOR REMARK 3 L11: 3.4652 L22: 8.6856 REMARK 3 L33: 38.4237 L12: 5.3996 REMARK 3 L13: 6.9798 L23: 13.4213 REMARK 3 S TENSOR REMARK 3 S11: -0.3347 S12: 0.0748 S13: 0.2372 REMARK 3 S21: -0.4887 S22: 0.0811 S23: 0.3244 REMARK 3 S31: -0.5088 S32: 0.2126 S33: 0.2536 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 249 B 314 REMARK 3 ORIGIN FOR THE GROUP (A): 42.2186 -44.0388 2.6536 REMARK 3 T TENSOR REMARK 3 T11: 0.0629 T22: 0.2101 REMARK 3 T33: 0.1246 T12: -0.0378 REMARK 3 T13: -0.0324 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.8673 L22: 1.8476 REMARK 3 L33: 6.4498 L12: -0.3596 REMARK 3 L13: -1.2086 L23: 1.5177 REMARK 3 S TENSOR REMARK 3 S11: -0.0164 S12: 0.1525 S13: -0.0872 REMARK 3 S21: -0.2377 S22: -0.0062 S23: 0.0284 REMARK 3 S31: 0.1287 S32: -0.0820 S33: 0.0225 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 315 B 333 REMARK 3 ORIGIN FOR THE GROUP (A): 55.0058 -42.2452 10.4854 REMARK 3 T TENSOR REMARK 3 T11: 0.0149 T22: 0.3098 REMARK 3 T33: 0.1216 T12: -0.0119 REMARK 3 T13: 0.0204 T23: -0.0821 REMARK 3 L TENSOR REMARK 3 L11: 14.6556 L22: 11.2759 REMARK 3 L33: 5.9559 L12: 0.0061 REMARK 3 L13: 0.5031 L23: 1.5346 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: -0.2885 S13: 0.1686 REMARK 3 S21: 0.2533 S22: 0.1475 S23: -0.1726 REMARK 3 S31: -0.1374 S32: 0.3757 S33: -0.1347 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2YAN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1290047465. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37552 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1WIK, 2WCI, 2WUL, 2WZ9, 3IPZ ENSEMBLE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M ACETATE PH 4.5, 2 M(NH4)2 SO4. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.22667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.61333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 19.61333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.22667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 230 OG REMARK 470 LYS A 322 CE NZ REMARK 470 SER B 230 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 273 O HOH A 2034 1.82 REMARK 500 O2 EDO A 1336 O HOH A 2095 1.94 REMARK 500 SG CYS B 261 O HOH B 2026 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 EDO A 1334 O2 EDO A 1334 6555 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 1338 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH A 1341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1335 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1336 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1337 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH B 1338 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WZ9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE THIOREDOXIN DOMAIN OF HUMAN TXNL2 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE START S230 AND MET231 DUE TO CLONING STRATEGY. DBREF 2YAN A 232 334 UNP O76003 GLRX3_HUMAN 232 334 DBREF 2YAN B 232 334 UNP O76003 GLRX3_HUMAN 232 334 SEQADV 2YAN SER A 230 UNP O76003 EXPRESSION TAG SEQADV 2YAN MET A 231 UNP O76003 EXPRESSION TAG SEQADV 2YAN SER B 230 UNP O76003 EXPRESSION TAG SEQADV 2YAN MET B 231 UNP O76003 EXPRESSION TAG SEQRES 1 A 105 SER MET ALA PRO LYS LEU GLU GLU ARG LEU LYS VAL LEU SEQRES 2 A 105 THR ASN LYS ALA SER VAL MET LEU PHE MET LYS GLY ASN SEQRES 3 A 105 LYS GLN GLU ALA LYS CYS GLY PHE SER LYS GLN ILE LEU SEQRES 4 A 105 GLU ILE LEU ASN SER THR GLY VAL GLU TYR GLU THR PHE SEQRES 5 A 105 ASP ILE LEU GLU ASP GLU GLU VAL ARG GLN GLY LEU LYS SEQRES 6 A 105 ALA TYR SER ASN TRP PRO THR TYR PRO GLN LEU TYR VAL SEQRES 7 A 105 LYS GLY GLU LEU VAL GLY GLY LEU ASP ILE VAL LYS GLU SEQRES 8 A 105 LEU LYS GLU ASN GLY GLU LEU LEU PRO ILE LEU ARG GLY SEQRES 9 A 105 GLU SEQRES 1 B 105 SER MET ALA PRO LYS LEU GLU GLU ARG LEU LYS VAL LEU SEQRES 2 B 105 THR ASN LYS ALA SER VAL MET LEU PHE MET LYS GLY ASN SEQRES 3 B 105 LYS GLN GLU ALA LYS CYS GLY PHE SER LYS GLN ILE LEU SEQRES 4 B 105 GLU ILE LEU ASN SER THR GLY VAL GLU TYR GLU THR PHE SEQRES 5 B 105 ASP ILE LEU GLU ASP GLU GLU VAL ARG GLN GLY LEU LYS SEQRES 6 B 105 ALA TYR SER ASN TRP PRO THR TYR PRO GLN LEU TYR VAL SEQRES 7 B 105 LYS GLY GLU LEU VAL GLY GLY LEU ASP ILE VAL LYS GLU SEQRES 8 B 105 LEU LYS GLU ASN GLY GLU LEU LEU PRO ILE LEU ARG GLY SEQRES 9 B 105 GLU HET EDO A1334 4 HET EDO A1335 4 HET EDO A1336 4 HET EDO A1337 4 HET FE A1338 1 HET SO4 A1339 5 HET CL A1340 1 HET GSH A1341 20 HET EDO B1335 4 HET EDO B1336 4 HET EDO B1337 4 HET GSH B1338 20 HETNAM EDO 1,2-ETHANEDIOL HETNAM FE FE (III) ION HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM GSH GLUTATHIONE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 7(C2 H6 O2) FORMUL 7 FE FE 3+ FORMUL 8 SO4 O4 S 2- FORMUL 9 CL CL 1- FORMUL 10 GSH 2(C10 H17 N3 O6 S) FORMUL 15 HOH *197(H2 O) HELIX 1 1 ALA A 232 ASN A 244 1 13 HELIX 2 2 GLY A 262 THR A 274 1 13 HELIX 3 3 ASP A 286 ASN A 298 1 13 HELIX 4 4 GLY A 314 ASN A 324 1 11 HELIX 5 5 GLU A 326 ARG A 332 1 7 HELIX 6 6 ALA B 232 ASN B 244 1 13 HELIX 7 7 CYS B 261 GLY B 275 1 15 HELIX 8 8 ASP B 286 ASN B 298 1 13 HELIX 9 9 GLY B 314 ASN B 324 1 11 HELIX 10 10 GLU B 326 ARG B 332 1 7 SHEET 1 AA 4 GLU A 279 ASP A 282 0 SHEET 2 AA 4 VAL A 248 MET A 252 1 O VAL A 248 N GLU A 279 SHEET 3 AA 4 GLN A 304 VAL A 307 -1 O GLN A 304 N PHE A 251 SHEET 4 AA 4 GLU A 310 GLY A 313 -1 O GLU A 310 N VAL A 307 SHEET 1 BA 4 GLU B 279 ASP B 282 0 SHEET 2 BA 4 VAL B 248 MET B 252 1 O VAL B 248 N GLU B 279 SHEET 3 BA 4 GLN B 304 VAL B 307 -1 O GLN B 304 N PHE B 251 SHEET 4 BA 4 GLU B 310 GLY B 313 -1 O GLU B 310 N VAL B 307 LINK SG CYS A 261 SG2 GSH A1341 1555 1555 2.15 LINK SG ACYS B 261 SG2 GSH B1338 1555 1555 2.14 CISPEP 1 TYR A 302 PRO A 303 0 7.78 CISPEP 2 TYR B 302 PRO B 303 0 7.75 SITE 1 AC1 3 LYS A 319 GLU A 323 HOH A2093 SITE 1 AC2 4 LYS A 294 ASN A 298 TRP A 299 EDO B1335 SITE 1 AC3 6 CYS A 261 GSH A1341 HOH A2094 HOH A2095 SITE 2 AC3 6 HOH A2096 GLN B 257 SITE 1 AC4 4 LYS A 256 GLU A 279 THR A 280 HOH A2045 SITE 1 AC5 2 GSH A1341 HOH A2023 SITE 1 AC6 3 LYS A 253 LYS A 260 ARG A 290 SITE 1 AC7 4 GLY A 314 ASP A 316 ILE A 317 GSH A1341 SITE 1 AC8 17 LYS A 253 CYS A 261 PHE A 263 ARG A 290 SITE 2 AC8 17 LYS A 294 THR A 301 TYR A 302 PRO A 303 SITE 3 AC8 17 GLY A 314 LEU A 315 ASP A 316 EDO A1336 SITE 4 AC8 17 FE A1338 CL A1340 HOH A2065 HOH A2097 SITE 5 AC8 17 GLN B 257 SITE 1 AC9 7 ASN A 298 EDO A1335 LYS B 256 GLU B 279 SITE 2 AC9 7 THR B 280 HOH B2042 HOH B2043 SITE 1 BC1 5 LEU A 321 GLU A 326 GLN B 266 GLU B 269 SITE 2 BC1 5 LYS B 319 SITE 1 BC2 3 GLU A 320 GLY B 262 GSH B1338 SITE 1 BC3 6 LYS B 253 LYS B 260 CYS B 261 ARG B 290 SITE 2 BC3 6 EDO B1337 HOH B2026 CRYST1 118.317 118.317 58.840 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008452 0.004880 0.000000 0.00000 SCALE2 0.000000 0.009759 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016995 0.00000