HEADER HYDROLASE 25-FEB-11 2YB1 TITLE STRUCTURE OF AN AMIDOHYDROLASE FROM CHROMOBACTERIUM VIOLACEUM (EFI TITLE 2 TARGET EFI-500202) WITH BOUND MN, AMP AND PHOSPHATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMIDOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: ENZYME FUNCTION INITIATIVE TARGET EFI-500202 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHROMOBACTERIUM VIOLACEUM; SOURCE 3 ORGANISM_TAXID: 536; SOURCE 4 ATCC: 12472; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,B.HILLERICH,R.FOTI,R.D.SEIDEL,W.D.ZENCHECK,R.TORO, AUTHOR 2 H.J.IMKER,F.M.RAUSHEL,J.A.GERLT,S.C.ALMO REVDAT 4 05-JUL-17 2YB1 1 REMARK REVDAT 3 12-FEB-14 2YB1 1 JRNL REVDAT 2 22-JAN-14 2YB1 1 JRNL REMARK VERSN REVDAT 1 16-MAR-11 2YB1 0 JRNL AUTH J.A.CUMMINGS,M.W.VETTING,S.V.GHODGE,C.XU,B.HILLERICH, JRNL AUTH 2 R.D.SEIDEL,S.C.ALMO,F.M.RAUSHEL JRNL TITL PROSPECTING FOR UNANNOTATED ENZYMES: DISCOVERY OF A JRNL TITL 2 3',5'-NUCLEOTIDE BISPHOSPHATE PHOSPHATASE WITHIN THE JRNL TITL 3 AMIDOHYDROLASE SUPERFAMILY. JRNL REF BIOCHEMISTRY V. 53 591 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 24401123 JRNL DOI 10.1021/BI401640R REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 18950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0464 - 3.6295 0.99 2873 144 0.1589 0.1731 REMARK 3 2 3.6295 - 2.8811 1.00 2764 139 0.1484 0.1922 REMARK 3 3 2.8811 - 2.5170 0.99 2674 153 0.1530 0.2014 REMARK 3 4 2.5170 - 2.2869 0.98 2654 161 0.1529 0.2130 REMARK 3 5 2.2869 - 2.1230 0.96 2549 154 0.1554 0.2461 REMARK 3 6 2.1230 - 1.9978 0.93 2504 131 0.1691 0.2479 REMARK 3 7 1.9978 - 1.8978 0.73 1964 86 0.1964 0.2484 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.49 REMARK 3 K_SOL : 0.42 REMARK 3 B_SOL : 49.55 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06320 REMARK 3 B22 (A**2) : 2.30320 REMARK 3 B33 (A**2) : 1.69290 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2214 REMARK 3 ANGLE : 1.127 3006 REMARK 3 CHIRALITY : 0.088 323 REMARK 3 PLANARITY : 0.006 396 REMARK 3 DIHEDRAL : 13.015 791 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:96) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4833 19.5178 45.7879 REMARK 3 T TENSOR REMARK 3 T11: 0.0172 T22: 0.0077 REMARK 3 T33: 0.0061 T12: 0.0010 REMARK 3 T13: 0.0017 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.0113 L22: 0.0090 REMARK 3 L33: 0.0013 L12: -0.0011 REMARK 3 L13: 0.0008 L23: 0.0031 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: -0.0000 S13: 0.0037 REMARK 3 S21: -0.0021 S22: -0.0035 S23: 0.0034 REMARK 3 S31: -0.0052 S32: -0.0043 S33: 0.0065 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 97:169) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4050 38.3225 38.8378 REMARK 3 T TENSOR REMARK 3 T11: 0.0283 T22: 0.0240 REMARK 3 T33: 0.0307 T12: 0.0083 REMARK 3 T13: 0.0057 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.1440 L22: 0.1382 REMARK 3 L33: 0.1055 L12: 0.0583 REMARK 3 L13: 0.0255 L23: 0.0033 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: -0.0364 S13: -0.0416 REMARK 3 S21: -0.0156 S22: -0.0259 S23: -0.0489 REMARK 3 S31: -0.0067 S32: 0.0016 S33: 0.0208 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 170:237) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9685 26.0104 61.2725 REMARK 3 T TENSOR REMARK 3 T11: 0.0286 T22: 0.0197 REMARK 3 T33: 0.0319 T12: -0.0013 REMARK 3 T13: -0.0006 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.0149 L22: 0.0383 REMARK 3 L33: 0.0681 L12: -0.0223 REMARK 3 L13: 0.0304 L23: -0.0509 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: -0.0041 S13: 0.0049 REMARK 3 S21: 0.0398 S22: 0.0021 S23: -0.0206 REMARK 3 S31: -0.0227 S32: -0.0082 S33: 0.0029 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 238:283) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0322 13.9594 55.7612 REMARK 3 T TENSOR REMARK 3 T11: 0.0133 T22: 0.0173 REMARK 3 T33: 0.0070 T12: 0.0047 REMARK 3 T13: 0.0021 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.0100 L22: 0.0450 REMARK 3 L33: 0.0568 L12: 0.0180 REMARK 3 L13: -0.0061 L23: 0.0151 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: -0.0162 S13: 0.0033 REMARK 3 S21: 0.0228 S22: -0.0017 S23: 0.0062 REMARK 3 S31: 0.0121 S32: 0.0040 S33: 0.0108 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YB1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1290047486. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19389 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (15 MG/ML IN 10 MM HEPES PH REMARK 280 7.5, 150 MM NACL, 10% GLYCEROL) WITH 5MM MNCL2, 20 MM AMP ADDED REMARK 280 TO 17% PEG 2000 MME, 100 MM BIS-TRIS PH 6.1. CRYO ML, 20% REMARK 280 ETHYLENE GLYCOL, 1 MM MN, 2 MM AMP. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.97900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.39250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.38250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.39250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.97900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.38250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 255 REMARK 465 GLY A 256 REMARK 465 ARG A 257 REMARK 465 LEU A 289 REMARK 465 TYR A 290 REMARK 465 PHE A 291 REMARK 465 GLN A 292 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 13 -94.09 -119.57 REMARK 500 HIS A 191 60.57 32.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2028 DISTANCE = 6.29 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1289 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 39 NE2 REMARK 620 2 HIS A 250 NE2 134.1 REMARK 620 3 ASP A 14 OD2 96.2 94.9 REMARK 620 4 AMP A1292 O3' 76.8 142.4 103.1 REMARK 620 5 AMP A1292 O2' 141.6 84.3 78.1 67.9 REMARK 620 6 PO4 A1293 O2 85.4 83.7 178.4 77.6 100.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1290 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 A1293 O2 REMARK 620 2 HIS A 9 NE2 85.1 REMARK 620 3 HIS A 7 NE2 164.3 105.4 REMARK 620 4 ASP A 248 OD1 87.6 94.0 80.2 REMARK 620 5 PO4 A1293 O3 62.4 147.5 106.1 83.7 REMARK 620 6 GLU A 64 OE1 100.3 89.5 91.6 171.6 97.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1291 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 75 ND1 REMARK 620 2 PO4 A1293 O3 148.9 REMARK 620 3 HIS A 191 NE2 108.9 97.7 REMARK 620 4 PO4 A1293 O4 87.2 67.4 112.6 REMARK 620 5 GLU A 64 OE2 92.7 92.4 111.2 133.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1290 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1291 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 1292 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1293 DBREF 2YB1 A 1 285 UNP Q7NXD4 Q7NXD4_CHRVO 1 285 SEQADV 2YB1 ALA A 286 UNP Q7NXD4 EXPRESSION TAG SEQADV 2YB1 GLU A 287 UNP Q7NXD4 EXPRESSION TAG SEQADV 2YB1 ASN A 288 UNP Q7NXD4 EXPRESSION TAG SEQADV 2YB1 LEU A 289 UNP Q7NXD4 EXPRESSION TAG SEQADV 2YB1 TYR A 290 UNP Q7NXD4 EXPRESSION TAG SEQADV 2YB1 PHE A 291 UNP Q7NXD4 EXPRESSION TAG SEQADV 2YB1 GLN A 292 UNP Q7NXD4 EXPRESSION TAG SEQRES 1 A 292 MET ALA ASN ILE ASP LEU HIS PHE HIS SER ARG THR SER SEQRES 2 A 292 ASP GLY ALA LEU THR PRO THR GLU VAL ILE ASP ARG ALA SEQRES 3 A 292 ALA ALA ARG ALA PRO ALA LEU LEU ALA LEU THR ASP HIS SEQRES 4 A 292 ASP CYS THR GLY GLY LEU ALA GLU ALA ALA ALA ALA ALA SEQRES 5 A 292 ALA ARG ARG GLY ILE PRO PHE LEU ASN GLY VAL GLU VAL SEQRES 6 A 292 SER VAL SER TRP GLY ARG HIS THR VAL HIS ILE VAL GLY SEQRES 7 A 292 LEU GLY ILE ASP PRO ALA GLU PRO ALA LEU ALA ALA GLY SEQRES 8 A 292 LEU LYS SER ILE ARG GLU GLY ARG LEU GLU ARG ALA ARG SEQRES 9 A 292 GLN MET GLY ALA SER LEU GLU ALA ALA GLY ILE ALA GLY SEQRES 10 A 292 CYS PHE ASP GLY ALA MET ARG TRP CYS ASP ASN PRO GLU SEQRES 11 A 292 MET ILE SER ARG THR HIS PHE ALA ARG HIS LEU VAL ASP SEQRES 12 A 292 SER GLY ALA VAL LYS ASP MET ARG THR VAL PHE ARG LYS SEQRES 13 A 292 TYR LEU THR PRO GLY LYS PRO GLY TYR VAL SER HIS GLN SEQRES 14 A 292 TRP ALA SER LEU GLU ASP ALA VAL GLY TRP ILE VAL GLY SEQRES 15 A 292 ALA GLY GLY MET ALA VAL ILE ALA HIS PRO GLY ARG TYR SEQRES 16 A 292 ASP MET GLY ARG THR LEU ILE GLU ARG LEU ILE LEU ASP SEQRES 17 A 292 PHE GLN ALA ALA GLY GLY GLN GLY ILE GLU VAL ALA SER SEQRES 18 A 292 GLY SER HIS SER LEU ASP ASP MET HIS LYS PHE ALA LEU SEQRES 19 A 292 HIS ALA ASP ARG HIS GLY LEU TYR ALA SER SER GLY SER SEQRES 20 A 292 ASP PHE HIS ALA PRO GLY GLU GLY GLY ARG ASP VAL GLY SEQRES 21 A 292 HIS THR GLU ASP LEU PRO PRO ILE CYS ARG PRO ILE TRP SEQRES 22 A 292 ARG GLU LEU GLU ALA ARG ILE LEU ARG PRO ALA ASP ALA SEQRES 23 A 292 GLU ASN LEU TYR PHE GLN HET MN A1289 1 HET MN A1290 1 HET MN A1291 1 HET AMP A1292 23 HET PO4 A1293 5 HETNAM MN MANGANESE (II) ION HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM PO4 PHOSPHATE ION FORMUL 2 MN 3(MN 2+) FORMUL 5 AMP C10 H14 N5 O7 P FORMUL 6 PO4 O4 P 3- FORMUL 7 HOH *271(H2 O) HELIX 1 1 THR A 18 ALA A 28 1 11 HELIX 2 2 GLY A 44 ARG A 55 1 12 HELIX 3 3 GLU A 85 GLU A 97 1 13 HELIX 4 4 GLY A 98 ALA A 113 1 16 HELIX 5 5 GLY A 117 ARG A 124 1 8 HELIX 6 6 ASN A 128 ILE A 132 5 5 HELIX 7 7 SER A 133 SER A 144 1 12 HELIX 8 8 ASP A 149 TYR A 157 1 9 HELIX 9 9 SER A 172 ALA A 183 1 12 HELIX 10 10 HIS A 191 TYR A 195 5 5 HELIX 11 11 GLY A 198 ALA A 212 1 15 HELIX 12 12 SER A 225 GLY A 240 1 16 HELIX 13 13 PRO A 271 LEU A 276 1 6 HELIX 14 14 GLU A 277 ILE A 280 5 4 HELIX 15 15 ALA A 284 ASN A 288 5 5 SHEET 1 AA 7 ILE A 4 ASP A 5 0 SHEET 2 AA 7 LEU A 33 LEU A 36 1 O LEU A 33 N ASP A 5 SHEET 3 AA 7 PHE A 59 TRP A 69 1 O LEU A 60 N LEU A 36 SHEET 4 AA 7 HIS A 72 LEU A 79 -1 O HIS A 72 N TRP A 69 SHEET 5 AA 7 MET A 186 ILE A 189 -1 O MET A 186 N LEU A 79 SHEET 6 AA 7 GLY A 216 SER A 221 1 O GLY A 216 N ILE A 189 SHEET 7 AA 7 TYR A 242 GLY A 246 1 O TYR A 242 N ILE A 217 LINK MN MN A1289 NE2 HIS A 39 1555 1555 2.21 LINK MN MN A1289 NE2 HIS A 250 1555 1555 2.28 LINK MN MN A1289 OD2 ASP A 14 1555 1555 2.17 LINK MN MN A1289 O3' AMP A1292 1555 1555 2.51 LINK MN MN A1289 O2' AMP A1292 1555 1555 2.39 LINK MN MN A1289 O2 PO4 A1293 1555 1555 2.20 LINK MN MN A1290 O2 PO4 A1293 1555 1555 2.54 LINK MN MN A1290 NE2 HIS A 9 1555 1555 2.16 LINK MN MN A1290 NE2 HIS A 7 1555 1555 2.19 LINK MN MN A1290 OD1 ASP A 248 1555 1555 2.45 LINK MN MN A1290 O3 PO4 A1293 1555 1555 2.12 LINK MN MN A1290 OE1 GLU A 64 1555 1555 2.26 LINK MN MN A1291 ND1 HIS A 75 1555 1555 2.22 LINK MN MN A1291 O3 PO4 A1293 1555 1555 2.12 LINK MN MN A1291 NE2 HIS A 191 1555 1555 2.14 LINK MN MN A1291 O4 PO4 A1293 1555 1555 2.33 LINK MN MN A1291 OE2 GLU A 64 1555 1555 2.12 SITE 1 AC1 5 ASP A 14 HIS A 39 HIS A 250 AMP A1292 SITE 2 AC1 5 PO4 A1293 SITE 1 AC2 6 HIS A 7 HIS A 9 GLU A 64 ASP A 248 SITE 2 AC2 6 MN A1291 PO4 A1293 SITE 1 AC3 5 GLU A 64 HIS A 75 HIS A 191 MN A1290 SITE 2 AC3 5 PO4 A1293 SITE 1 AC4 14 ASP A 14 HIS A 39 ARG A 99 ARG A 102 SITE 2 AC4 14 SER A 133 ARG A 134 THR A 135 PHE A 154 SITE 3 AC4 14 HIS A 250 MN A1289 PO4 A1293 HOH A2268 SITE 4 AC4 14 HOH A2269 HOH A2270 SITE 1 AC5 14 HIS A 7 HIS A 9 HIS A 39 GLU A 64 SITE 2 AC5 14 HIS A 75 HIS A 191 ARG A 194 ASP A 248 SITE 3 AC5 14 HIS A 250 MN A1289 MN A1290 MN A1291 SITE 4 AC5 14 AMP A1292 HOH A2271 CRYST1 39.958 46.765 130.785 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025026 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021384 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007646 0.00000