data_2YBE # _entry.id 2YBE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YBE pdb_00002ybe 10.2210/pdb2ybe/pdb PDBE EBI-47551 ? ? WWPDB D_1290047551 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2XE7 unspecified 'THE COMPLETE REACTION CYCLE OF HUMAN PHOSPHOGLYCERATE KINASE: THE OPEN TERNARY COMPLEX WITH 3PG AND ADP' PDB 2Y3I unspecified 'THE STRUCTURE OF THE FULLY CLOSED CONFORMATION OF HUMAN PGK IN COMPLEX WITH L-ADP, 3PG AND THE TSA ALUMINIUM TETRAFLUORIDE' PDB 2XE6 unspecified 'THE COMPLETE REACTION CYCLE OF HUMAN PHOSPHOGLYCERATE KINASE: THE OPEN BINARY COMPLEX WITH 3PG' PDB 2WZB unspecified ;THE CATALYTICALLY ACTIVE FULLY CLOSED CONFORMATION OF HUMAN PHOSPHOGLYCERATE KINASE IN COMPLEX WITH ADP, 3PG AND MAGNESIUM TRIFLUORIDE ; PDB 2WZC unspecified ;THE CATALYTICALLY ACTIVE FULLY CLOSED CONFORMATION OF HUMAN PHOSPHOGLYCERATE KINASE IN COMPLEX WITH ADP, 3PG AND ALUMINIUM TETRAFLUORIDE ; PDB 2WZD unspecified ;THE CATALYTICALLY ACTIVE FULLY CLOSED CONFORMATION OF HUMAN PHOSPHOGLYCERATE KINASE K219A MUTANT IN COMPLEX WITH ADP, 3PG AND ALUMINIUM TRIFLUORIDE ; PDB 2X15 unspecified 'THE CATALYTICALLY ACTIVE FULLY CLOSED CONFORMATION OF HUMAN PHOSPHOGLYCERATE KINASE IN COMPLEX WITH ADP AND 1,3-BISPHOSPHOGLYCERATE' PDB 2X14 unspecified 'THE CATALYTICALLY ACTIVE FULLY CLOSED CONFORMATION OF HUMAN PHOSPHOGLYCERATE KINASE K219A MUTANT IN COMPLEX WITH AMP-PCP AND 3PG' PDB 2X13 unspecified 'THE CATALYTICALLY ACTIVE FULLY CLOSED CONFORMATION OF HUMAN PHOSPHOGLYCERATE KINASE IN COMPLEX WITH ADP AND 3PHOSPHOGLYCERATE' PDB 2XE8 unspecified 'THE COMPLETE REACTION CYCLE OF HUMAN PHOSPHOGLYCERATE KINASE: THE OPEN TERNARY COMPLEX WITH 3PG AND AMP-PNP' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YBE _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-03-07 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bowler, M.W.' 1 'Chaloin, L.' 2 'Lionne, C.' 3 # _citation.id primary _citation.title 'Interaction of Human 3-Phosphoglycerate Kinase with its Two Substrates: Is Substrate Antagonism a Kinetic Advantage?' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 409 _citation.page_first 742 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21549713 _citation.pdbx_database_id_DOI 10.1016/J.JMB.2011.04.048 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lallemand, P.' 1 ? primary 'Chaloin, L.' 2 ? primary 'Roy, B.' 3 ? primary 'Barman, T.' 4 ? primary 'Bowler, M.W.' 5 ? primary 'Lionne, C.' 6 ? # _cell.entry_id 2YBE _cell.length_a 39.202 _cell.length_b 91.030 _cell.length_c 108.807 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YBE _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PHOSPHOGLYCERATE KINASE 1' 44672.621 1 2.7.2.3 ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 non-polymer syn "L-ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 5 non-polymer syn 'TETRAFLUOROALUMINATE ION' 102.975 1 ? ? ? ? 6 non-polymer syn '3-PHOSPHOGLYCERIC ACID' 186.057 1 ? ? ? ? 7 water nat water 18.015 116 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PHOSPHOGLYCERATE KINASE, CELL MIGRATION-INDUCING GENE 10 PROTEIN, PRIMER RECOGNITION PROTEIN 2, PRP 2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEP VAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDV YVNDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGM AFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPES SKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASL ELLEGKVLPGVDALSNI ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEP VAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDV YVNDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGM AFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPES SKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASL ELLEGKVLPGVDALSNI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 LEU n 1 4 SER n 1 5 ASN n 1 6 LYS n 1 7 LEU n 1 8 THR n 1 9 LEU n 1 10 ASP n 1 11 LYS n 1 12 LEU n 1 13 ASP n 1 14 VAL n 1 15 LYS n 1 16 GLY n 1 17 LYS n 1 18 ARG n 1 19 VAL n 1 20 VAL n 1 21 MET n 1 22 ARG n 1 23 VAL n 1 24 ASP n 1 25 PHE n 1 26 ASN n 1 27 VAL n 1 28 PRO n 1 29 MET n 1 30 LYS n 1 31 ASN n 1 32 ASN n 1 33 GLN n 1 34 ILE n 1 35 THR n 1 36 ASN n 1 37 ASN n 1 38 GLN n 1 39 ARG n 1 40 ILE n 1 41 LYS n 1 42 ALA n 1 43 ALA n 1 44 VAL n 1 45 PRO n 1 46 SER n 1 47 ILE n 1 48 LYS n 1 49 PHE n 1 50 CYS n 1 51 LEU n 1 52 ASP n 1 53 ASN n 1 54 GLY n 1 55 ALA n 1 56 LYS n 1 57 SER n 1 58 VAL n 1 59 VAL n 1 60 LEU n 1 61 MET n 1 62 SER n 1 63 HIS n 1 64 LEU n 1 65 GLY n 1 66 ARG n 1 67 PRO n 1 68 ASP n 1 69 GLY n 1 70 VAL n 1 71 PRO n 1 72 MET n 1 73 PRO n 1 74 ASP n 1 75 LYS n 1 76 TYR n 1 77 SER n 1 78 LEU n 1 79 GLU n 1 80 PRO n 1 81 VAL n 1 82 ALA n 1 83 VAL n 1 84 GLU n 1 85 LEU n 1 86 LYS n 1 87 SER n 1 88 LEU n 1 89 LEU n 1 90 GLY n 1 91 LYS n 1 92 ASP n 1 93 VAL n 1 94 LEU n 1 95 PHE n 1 96 LEU n 1 97 LYS n 1 98 ASP n 1 99 CYS n 1 100 VAL n 1 101 GLY n 1 102 PRO n 1 103 GLU n 1 104 VAL n 1 105 GLU n 1 106 LYS n 1 107 ALA n 1 108 CYS n 1 109 ALA n 1 110 ASN n 1 111 PRO n 1 112 ALA n 1 113 ALA n 1 114 GLY n 1 115 SER n 1 116 VAL n 1 117 ILE n 1 118 LEU n 1 119 LEU n 1 120 GLU n 1 121 ASN n 1 122 LEU n 1 123 ARG n 1 124 PHE n 1 125 HIS n 1 126 VAL n 1 127 GLU n 1 128 GLU n 1 129 GLU n 1 130 GLY n 1 131 LYS n 1 132 GLY n 1 133 LYS n 1 134 ASP n 1 135 ALA n 1 136 SER n 1 137 GLY n 1 138 ASN n 1 139 LYS n 1 140 VAL n 1 141 LYS n 1 142 ALA n 1 143 GLU n 1 144 PRO n 1 145 ALA n 1 146 LYS n 1 147 ILE n 1 148 GLU n 1 149 ALA n 1 150 PHE n 1 151 ARG n 1 152 ALA n 1 153 SER n 1 154 LEU n 1 155 SER n 1 156 LYS n 1 157 LEU n 1 158 GLY n 1 159 ASP n 1 160 VAL n 1 161 TYR n 1 162 VAL n 1 163 ASN n 1 164 ASP n 1 165 ALA n 1 166 PHE n 1 167 GLY n 1 168 THR n 1 169 ALA n 1 170 HIS n 1 171 ARG n 1 172 ALA n 1 173 HIS n 1 174 SER n 1 175 SER n 1 176 MET n 1 177 VAL n 1 178 GLY n 1 179 VAL n 1 180 ASN n 1 181 LEU n 1 182 PRO n 1 183 GLN n 1 184 LYS n 1 185 ALA n 1 186 GLY n 1 187 GLY n 1 188 PHE n 1 189 LEU n 1 190 MET n 1 191 LYS n 1 192 LYS n 1 193 GLU n 1 194 LEU n 1 195 ASN n 1 196 TYR n 1 197 PHE n 1 198 ALA n 1 199 LYS n 1 200 ALA n 1 201 LEU n 1 202 GLU n 1 203 SER n 1 204 PRO n 1 205 GLU n 1 206 ARG n 1 207 PRO n 1 208 PHE n 1 209 LEU n 1 210 ALA n 1 211 ILE n 1 212 LEU n 1 213 GLY n 1 214 GLY n 1 215 ALA n 1 216 LYS n 1 217 VAL n 1 218 ALA n 1 219 ASP n 1 220 LYS n 1 221 ILE n 1 222 GLN n 1 223 LEU n 1 224 ILE n 1 225 ASN n 1 226 ASN n 1 227 MET n 1 228 LEU n 1 229 ASP n 1 230 LYS n 1 231 VAL n 1 232 ASN n 1 233 GLU n 1 234 MET n 1 235 ILE n 1 236 ILE n 1 237 GLY n 1 238 GLY n 1 239 GLY n 1 240 MET n 1 241 ALA n 1 242 PHE n 1 243 THR n 1 244 PHE n 1 245 LEU n 1 246 LYS n 1 247 VAL n 1 248 LEU n 1 249 ASN n 1 250 ASN n 1 251 MET n 1 252 GLU n 1 253 ILE n 1 254 GLY n 1 255 THR n 1 256 SER n 1 257 LEU n 1 258 PHE n 1 259 ASP n 1 260 GLU n 1 261 GLU n 1 262 GLY n 1 263 ALA n 1 264 LYS n 1 265 ILE n 1 266 VAL n 1 267 LYS n 1 268 ASP n 1 269 LEU n 1 270 MET n 1 271 SER n 1 272 LYS n 1 273 ALA n 1 274 GLU n 1 275 LYS n 1 276 ASN n 1 277 GLY n 1 278 VAL n 1 279 LYS n 1 280 ILE n 1 281 THR n 1 282 LEU n 1 283 PRO n 1 284 VAL n 1 285 ASP n 1 286 PHE n 1 287 VAL n 1 288 THR n 1 289 ALA n 1 290 ASP n 1 291 LYS n 1 292 PHE n 1 293 ASP n 1 294 GLU n 1 295 ASN n 1 296 ALA n 1 297 LYS n 1 298 THR n 1 299 GLY n 1 300 GLN n 1 301 ALA n 1 302 THR n 1 303 VAL n 1 304 ALA n 1 305 SER n 1 306 GLY n 1 307 ILE n 1 308 PRO n 1 309 ALA n 1 310 GLY n 1 311 TRP n 1 312 MET n 1 313 GLY n 1 314 LEU n 1 315 ASP n 1 316 CYS n 1 317 GLY n 1 318 PRO n 1 319 GLU n 1 320 SER n 1 321 SER n 1 322 LYS n 1 323 LYS n 1 324 TYR n 1 325 ALA n 1 326 GLU n 1 327 ALA n 1 328 VAL n 1 329 THR n 1 330 ARG n 1 331 ALA n 1 332 LYS n 1 333 GLN n 1 334 ILE n 1 335 VAL n 1 336 TRP n 1 337 ASN n 1 338 GLY n 1 339 PRO n 1 340 VAL n 1 341 GLY n 1 342 VAL n 1 343 PHE n 1 344 GLU n 1 345 TRP n 1 346 GLU n 1 347 ALA n 1 348 PHE n 1 349 ALA n 1 350 ARG n 1 351 GLY n 1 352 THR n 1 353 LYS n 1 354 ALA n 1 355 LEU n 1 356 MET n 1 357 ASP n 1 358 GLU n 1 359 VAL n 1 360 VAL n 1 361 LYS n 1 362 ALA n 1 363 THR n 1 364 SER n 1 365 ARG n 1 366 GLY n 1 367 CYS n 1 368 ILE n 1 369 THR n 1 370 ILE n 1 371 ILE n 1 372 GLY n 1 373 GLY n 1 374 GLY n 1 375 ASP n 1 376 THR n 1 377 ALA n 1 378 THR n 1 379 CYS n 1 380 CYS n 1 381 ALA n 1 382 LYS n 1 383 TRP n 1 384 ASN n 1 385 THR n 1 386 GLU n 1 387 ASP n 1 388 LYS n 1 389 VAL n 1 390 SER n 1 391 HIS n 1 392 VAL n 1 393 SER n 1 394 THR n 1 395 GLY n 1 396 GLY n 1 397 GLY n 1 398 ALA n 1 399 SER n 1 400 LEU n 1 401 GLU n 1 402 LEU n 1 403 LEU n 1 404 GLU n 1 405 GLY n 1 406 LYS n 1 407 VAL n 1 408 LEU n 1 409 PRO n 1 410 GLY n 1 411 VAL n 1 412 ASP n 1 413 ALA n 1 414 LEU n 1 415 SER n 1 416 ASN n 1 417 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PGK1_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P00558 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YBE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 417 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00558 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 417 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 416 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3PG non-polymer . '3-PHOSPHOGLYCERIC ACID' ? 'C3 H7 O7 P' 186.057 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ALF non-polymer . 'TETRAFLUOROALUMINATE ION' ? 'Al F4 -1' 102.975 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LA8 non-polymer . "L-ADENOSINE-5'-DIPHOSPHATE" L-ADP 'C10 H15 N5 O10 P2' 427.201 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2YBE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_percent_sol 46.33 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '29% PEG 2000MME, 0.1 M BIS/TRIS PH 6.25 .' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2011-01-31 _diffrn_detector.details 'GE 221' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DIAMOND 001' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.932 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength 0.932 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2YBE _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 46.70 _reflns.d_resolution_high 2.00 _reflns.number_obs 25350 _reflns.number_all ? _reflns.percent_possible_obs 93.6 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.60 _reflns.B_iso_Wilson_estimate 27.0 _reflns.pdbx_redundancy 3.8 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.11 _reflns_shell.percent_possible_all 83.5 _reflns_shell.Rmerge_I_obs 0.47 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.20 _reflns_shell.pdbx_redundancy 3.5 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2YBE _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 24020 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 93.29 _refine.ls_R_factor_obs 0.19582 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19316 _refine.ls_R_factor_R_free 0.24329 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1287 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.939 _refine.B_iso_mean 37.468 _refine.aniso_B[1][1] -0.61 _refine.aniso_B[2][2] 3.08 _refine.aniso_B[3][3] -2.46 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 2WZC' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.218 _refine.pdbx_overall_ESU_R_Free 0.186 _refine.overall_SU_ML 0.172 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 11.603 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3079 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 45 _refine_hist.number_atoms_solvent 116 _refine_hist.number_atoms_total 3240 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 0.022 ? 3171 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 2155 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.866 1.996 ? 4280 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.039 3.000 ? 5307 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.387 5.000 ? 408 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 42.522 25.641 ? 117 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.816 15.000 ? 578 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.623 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.111 0.200 ? 492 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.021 ? 3465 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 561 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.051 _refine_ls_shell.number_reflns_R_work 1419 _refine_ls_shell.R_factor_R_work 0.328 _refine_ls_shell.percent_reflns_obs 81.59 _refine_ls_shell.R_factor_R_free 0.436 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 75 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2YBE _struct.title ;The structure of the fully closed conformation of human PGK in complex with L-ADP, 3PG and the TSA aluminium tetrafluoride at 2.0 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YBE _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'TRANSFERASE, L-NUCLEOSIDE ANALOGUES, GLYCOLYSIS, NUCLEOTIDE BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 9 ? LEU A 12 ? LEU A 8 LEU A 11 5 ? 4 HELX_P HELX_P2 2 ASN A 37 ? ASN A 53 ? ASN A 36 ASN A 52 1 ? 17 HELX_P HELX_P3 3 MET A 72 ? SER A 77 ? MET A 71 SER A 76 1 ? 6 HELX_P HELX_P4 4 LEU A 78 ? GLY A 90 ? LEU A 77 GLY A 89 1 ? 13 HELX_P HELX_P5 5 GLY A 101 ? ASN A 110 ? GLY A 100 ASN A 109 1 ? 10 HELX_P HELX_P6 6 ASN A 121 ? HIS A 125 ? ASN A 120 HIS A 124 5 ? 5 HELX_P HELX_P7 7 GLU A 143 ? LYS A 156 ? GLU A 142 LYS A 155 1 ? 14 HELX_P HELX_P8 8 ALA A 165 ? ALA A 169 ? ALA A 164 ALA A 168 5 ? 5 HELX_P HELX_P9 9 HIS A 173 ? GLY A 178 ? HIS A 172 GLY A 177 1 ? 6 HELX_P HELX_P10 10 GLY A 187 ? SER A 203 ? GLY A 186 SER A 202 1 ? 17 HELX_P HELX_P11 11 LYS A 216 ? ILE A 221 ? LYS A 215 ILE A 220 1 ? 6 HELX_P HELX_P12 12 LEU A 223 ? LEU A 228 ? LEU A 222 LEU A 227 1 ? 6 HELX_P HELX_P13 13 MET A 240 ? ASN A 250 ? MET A 239 ASN A 249 1 ? 11 HELX_P HELX_P14 14 ASP A 259 ? ASN A 276 ? ASP A 258 ASN A 275 1 ? 18 HELX_P HELX_P15 15 GLY A 317 ? ALA A 331 ? GLY A 316 ALA A 330 1 ? 15 HELX_P HELX_P16 16 TRP A 345 ? PHE A 348 ? TRP A 344 PHE A 347 5 ? 4 HELX_P HELX_P17 17 ALA A 349 ? ARG A 365 ? ALA A 348 ARG A 364 1 ? 17 HELX_P HELX_P18 18 ASP A 375 ? TRP A 383 ? ASP A 374 TRP A 382 1 ? 9 HELX_P HELX_P19 19 GLY A 396 ? GLY A 405 ? GLY A 395 GLY A 404 1 ? 10 HELX_P HELX_P20 20 LEU A 408 ? ALA A 413 ? LEU A 407 ALA A 412 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 375 OD2 ? ? ? 1_555 B MG . MG ? ? A ASP 374 A MG 1417 1_555 ? ? ? ? ? ? ? 1.996 ? ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 D LA8 . O3B ? ? A MG 1417 A LA8 1419 1_555 ? ? ? ? ? ? ? 1.819 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 D LA8 . O1A ? ? A MG 1417 A LA8 1419 1_555 ? ? ? ? ? ? ? 1.866 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 1417 A HOH 2112 1_555 ? ? ? ? ? ? ? 2.011 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 1417 A HOH 2115 1_555 ? ? ? ? ? ? ? 2.225 ? ? metalc6 metalc ? ? D LA8 . O1B ? ? ? 1_555 E ALF . AL ? ? A LA8 1419 A ALF 1420 1_555 ? ? ? ? ? ? ? 1.953 ? ? metalc7 metalc ? ? E ALF . AL ? ? ? 1_555 F 3PG . O2 ? ? A ALF 1420 A 3PG 1421 1_555 ? ? ? ? ? ? ? 1.953 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ARG _struct_mon_prot_cis.label_seq_id 206 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ARG _struct_mon_prot_cis.auth_seq_id 205 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 207 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 206 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -3.20 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 6 ? AB ? 2 ? AC ? 2 ? AD ? 6 ? AE ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel AA 5 6 ? parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel AD 1 2 ? parallel AD 2 3 ? parallel AD 3 4 ? parallel AD 4 5 ? parallel AD 5 6 ? parallel AE 1 2 ? anti-parallel AE 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LEU A 94 ? PHE A 95 ? LEU A 93 PHE A 94 AA 2 SER A 115 ? LEU A 118 ? SER A 114 LEU A 117 AA 3 SER A 57 ? MET A 61 ? SER A 56 MET A 60 AA 4 ARG A 18 ? ARG A 22 ? ARG A 17 ARG A 21 AA 5 VAL A 160 ? ASN A 163 ? VAL A 159 ASN A 162 AA 6 LYS A 184 ? GLY A 186 ? LYS A 183 GLY A 185 AB 1 MET A 29 ? LYS A 30 ? MET A 28 LYS A 29 AB 2 GLN A 33 ? ILE A 34 ? GLN A 32 ILE A 33 AC 1 LYS A 131 ? GLY A 132 ? LYS A 130 GLY A 131 AC 2 VAL A 140 ? LYS A 141 ? VAL A 139 LYS A 140 AD 1 LYS A 279 ? THR A 281 ? LYS A 278 THR A 280 AD 2 GLU A 233 ? ILE A 236 ? GLU A 232 ILE A 235 AD 3 PHE A 208 ? LEU A 212 ? PHE A 207 LEU A 211 AD 4 GLN A 333 ? ASN A 337 ? GLN A 332 ASN A 336 AD 5 ILE A 368 ? GLY A 372 ? ILE A 367 GLY A 371 AD 6 HIS A 391 ? SER A 393 ? HIS A 390 SER A 392 AE 1 THR A 298 ? THR A 302 ? THR A 297 THR A 301 AE 2 ASP A 285 ? ALA A 289 ? ASP A 284 ALA A 288 AE 3 MET A 312 ? CYS A 316 ? MET A 311 CYS A 315 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LEU A 94 ? N LEU A 93 O VAL A 116 ? O VAL A 115 AA 2 3 N ILE A 117 ? N ILE A 116 O VAL A 58 ? O VAL A 57 AA 3 4 N VAL A 59 ? N VAL A 58 O VAL A 19 ? O VAL A 18 AA 4 5 N VAL A 20 ? N VAL A 19 O VAL A 160 ? O VAL A 159 AA 5 6 N ASN A 163 ? N ASN A 162 O ALA A 185 ? O ALA A 184 AB 1 2 N LYS A 30 ? N LYS A 29 O GLN A 33 ? O GLN A 32 AC 1 2 N GLY A 132 ? N GLY A 131 O VAL A 140 ? O VAL A 139 AD 1 2 N THR A 281 ? N THR A 280 O MET A 234 ? O MET A 233 AD 2 3 N ILE A 235 ? N ILE A 234 O ALA A 210 ? O ALA A 209 AD 3 4 N LEU A 209 ? N LEU A 208 O GLN A 333 ? O GLN A 332 AD 4 5 N ILE A 334 ? N ILE A 333 O ILE A 368 ? O ILE A 367 AD 5 6 N ILE A 371 ? N ILE A 370 O HIS A 391 ? O HIS A 390 AE 1 2 N ALA A 301 ? N ALA A 300 O PHE A 286 ? O PHE A 285 AE 2 3 N ALA A 289 ? N ALA A 288 O MET A 312 ? O MET A 311 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 1417 ? 5 'BINDING SITE FOR RESIDUE MG A 1417' AC2 Software A CL 1418 ? 4 'BINDING SITE FOR RESIDUE CL A 1418' AC3 Software A LA8 1419 ? 22 'BINDING SITE FOR RESIDUE LA8 A 1419' AC4 Software A ALF 1420 ? 14 'BINDING SITE FOR RESIDUE ALF A 1420' AC5 Software A 3PG 1421 ? 14 'BINDING SITE FOR RESIDUE 3PG A 1421' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP A 375 ? ASP A 374 . ? 1_555 ? 2 AC1 5 LA8 D . ? LA8 A 1419 . ? 1_555 ? 3 AC1 5 ALF E . ? ALF A 1420 . ? 1_555 ? 4 AC1 5 HOH G . ? HOH A 2112 . ? 1_555 ? 5 AC1 5 HOH G . ? HOH A 2115 . ? 1_555 ? 6 AC2 4 ARG A 66 ? ARG A 65 . ? 1_555 ? 7 AC2 4 LYS A 216 ? LYS A 215 . ? 1_555 ? 8 AC2 4 ALA A 218 ? ALA A 217 . ? 1_555 ? 9 AC2 4 ASP A 219 ? ASP A 218 . ? 1_555 ? 10 AC3 22 GLY A 214 ? GLY A 213 . ? 1_555 ? 11 AC3 22 ALA A 215 ? ALA A 214 . ? 1_555 ? 12 AC3 22 LYS A 216 ? LYS A 215 . ? 1_555 ? 13 AC3 22 LYS A 220 ? LYS A 219 . ? 1_555 ? 14 AC3 22 GLY A 239 ? GLY A 238 . ? 1_555 ? 15 AC3 22 ASN A 337 ? ASN A 336 . ? 1_555 ? 16 AC3 22 PRO A 339 ? PRO A 338 . ? 1_555 ? 17 AC3 22 GLY A 341 ? GLY A 340 . ? 1_555 ? 18 AC3 22 VAL A 342 ? VAL A 341 . ? 1_555 ? 19 AC3 22 PHE A 343 ? PHE A 342 . ? 1_555 ? 20 AC3 22 GLU A 344 ? GLU A 343 . ? 1_555 ? 21 AC3 22 GLY A 372 ? GLY A 371 . ? 1_555 ? 22 AC3 22 GLY A 373 ? GLY A 372 . ? 1_555 ? 23 AC3 22 GLY A 374 ? GLY A 373 . ? 1_555 ? 24 AC3 22 ASP A 375 ? ASP A 374 . ? 1_555 ? 25 AC3 22 THR A 376 ? THR A 375 . ? 1_555 ? 26 AC3 22 MG B . ? MG A 1417 . ? 1_555 ? 27 AC3 22 ALF E . ? ALF A 1420 . ? 1_555 ? 28 AC3 22 HOH G . ? HOH A 2110 . ? 1_555 ? 29 AC3 22 HOH G . ? HOH A 2111 . ? 1_555 ? 30 AC3 22 HOH G . ? HOH A 2112 . ? 1_555 ? 31 AC3 22 HOH G . ? HOH A 2113 . ? 1_555 ? 32 AC4 14 ARG A 39 ? ARG A 38 . ? 1_555 ? 33 AC4 14 LYS A 216 ? LYS A 215 . ? 1_555 ? 34 AC4 14 LYS A 220 ? LYS A 219 . ? 1_555 ? 35 AC4 14 GLY A 373 ? GLY A 372 . ? 1_555 ? 36 AC4 14 GLY A 374 ? GLY A 373 . ? 1_555 ? 37 AC4 14 GLY A 396 ? GLY A 395 . ? 1_555 ? 38 AC4 14 GLY A 397 ? GLY A 396 . ? 1_555 ? 39 AC4 14 MG B . ? MG A 1417 . ? 1_555 ? 40 AC4 14 LA8 D . ? LA8 A 1419 . ? 1_555 ? 41 AC4 14 3PG F . ? 3PG A 1421 . ? 1_555 ? 42 AC4 14 HOH G . ? HOH A 2047 . ? 1_555 ? 43 AC4 14 HOH G . ? HOH A 2112 . ? 1_555 ? 44 AC4 14 HOH G . ? HOH A 2114 . ? 1_555 ? 45 AC4 14 HOH G . ? HOH A 2115 . ? 1_555 ? 46 AC5 14 ASP A 24 ? ASP A 23 . ? 1_555 ? 47 AC5 14 ASN A 26 ? ASN A 25 . ? 1_555 ? 48 AC5 14 ARG A 39 ? ARG A 38 . ? 1_555 ? 49 AC5 14 HIS A 63 ? HIS A 62 . ? 1_555 ? 50 AC5 14 ARG A 66 ? ARG A 65 . ? 1_555 ? 51 AC5 14 ARG A 123 ? ARG A 122 . ? 1_555 ? 52 AC5 14 GLY A 167 ? GLY A 166 . ? 1_555 ? 53 AC5 14 THR A 168 ? THR A 167 . ? 1_555 ? 54 AC5 14 ARG A 171 ? ARG A 170 . ? 1_555 ? 55 AC5 14 LYS A 216 ? LYS A 215 . ? 1_555 ? 56 AC5 14 ALF E . ? ALF A 1420 . ? 1_555 ? 57 AC5 14 HOH G . ? HOH A 2114 . ? 1_555 ? 58 AC5 14 HOH G . ? HOH A 2115 . ? 1_555 ? 59 AC5 14 HOH G . ? HOH A 2116 . ? 1_555 ? # _database_PDB_matrix.entry_id 2YBE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YBE _atom_sites.fract_transf_matrix[1][1] 0.025509 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010985 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009191 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol AL C CL F MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 SER 2 1 ? ? ? A . n A 1 3 LEU 3 2 2 LEU LEU A . n A 1 4 SER 4 3 3 SER SER A . n A 1 5 ASN 5 4 4 ASN ASN A . n A 1 6 LYS 6 5 5 LYS LYS A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 THR 8 7 7 THR THR A . n A 1 9 LEU 9 8 8 LEU LEU A . n A 1 10 ASP 10 9 9 ASP ASP A . n A 1 11 LYS 11 10 10 LYS LYS A . n A 1 12 LEU 12 11 11 LEU LEU A . n A 1 13 ASP 13 12 12 ASP ASP A . n A 1 14 VAL 14 13 13 VAL VAL A . n A 1 15 LYS 15 14 14 LYS LYS A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 LYS 17 16 16 LYS LYS A . n A 1 18 ARG 18 17 17 ARG ARG A . n A 1 19 VAL 19 18 18 VAL VAL A . n A 1 20 VAL 20 19 19 VAL VAL A . n A 1 21 MET 21 20 20 MET MET A . n A 1 22 ARG 22 21 21 ARG ARG A . n A 1 23 VAL 23 22 22 VAL VAL A . n A 1 24 ASP 24 23 23 ASP ASP A . n A 1 25 PHE 25 24 24 PHE PHE A . n A 1 26 ASN 26 25 25 ASN ASN A . n A 1 27 VAL 27 26 26 VAL VAL A . n A 1 28 PRO 28 27 27 PRO PRO A . n A 1 29 MET 29 28 28 MET MET A . n A 1 30 LYS 30 29 29 LYS LYS A . n A 1 31 ASN 31 30 30 ASN ASN A . n A 1 32 ASN 32 31 31 ASN ASN A . n A 1 33 GLN 33 32 32 GLN GLN A . n A 1 34 ILE 34 33 33 ILE ILE A . n A 1 35 THR 35 34 34 THR THR A . n A 1 36 ASN 36 35 35 ASN ASN A . n A 1 37 ASN 37 36 36 ASN ASN A . n A 1 38 GLN 38 37 37 GLN GLN A . n A 1 39 ARG 39 38 38 ARG ARG A . n A 1 40 ILE 40 39 39 ILE ILE A . n A 1 41 LYS 41 40 40 LYS LYS A . n A 1 42 ALA 42 41 41 ALA ALA A . n A 1 43 ALA 43 42 42 ALA ALA A . n A 1 44 VAL 44 43 43 VAL VAL A . n A 1 45 PRO 45 44 44 PRO PRO A . n A 1 46 SER 46 45 45 SER SER A . n A 1 47 ILE 47 46 46 ILE ILE A . n A 1 48 LYS 48 47 47 LYS LYS A . n A 1 49 PHE 49 48 48 PHE PHE A . n A 1 50 CYS 50 49 49 CYS CYS A . n A 1 51 LEU 51 50 50 LEU LEU A . n A 1 52 ASP 52 51 51 ASP ASP A . n A 1 53 ASN 53 52 52 ASN ASN A . n A 1 54 GLY 54 53 53 GLY GLY A . n A 1 55 ALA 55 54 54 ALA ALA A . n A 1 56 LYS 56 55 55 LYS LYS A . n A 1 57 SER 57 56 56 SER SER A . n A 1 58 VAL 58 57 57 VAL VAL A . n A 1 59 VAL 59 58 58 VAL VAL A . n A 1 60 LEU 60 59 59 LEU LEU A . n A 1 61 MET 61 60 60 MET MET A . n A 1 62 SER 62 61 61 SER SER A . n A 1 63 HIS 63 62 62 HIS HIS A . n A 1 64 LEU 64 63 63 LEU LEU A . n A 1 65 GLY 65 64 64 GLY GLY A . n A 1 66 ARG 66 65 65 ARG ARG A . n A 1 67 PRO 67 66 66 PRO PRO A . n A 1 68 ASP 68 67 67 ASP ASP A . n A 1 69 GLY 69 68 68 GLY GLY A . n A 1 70 VAL 70 69 69 VAL VAL A . n A 1 71 PRO 71 70 70 PRO PRO A . n A 1 72 MET 72 71 71 MET MET A . n A 1 73 PRO 73 72 72 PRO PRO A . n A 1 74 ASP 74 73 73 ASP ASP A . n A 1 75 LYS 75 74 74 LYS LYS A . n A 1 76 TYR 76 75 75 TYR TYR A . n A 1 77 SER 77 76 76 SER SER A . n A 1 78 LEU 78 77 77 LEU LEU A . n A 1 79 GLU 79 78 78 GLU GLU A . n A 1 80 PRO 80 79 79 PRO PRO A . n A 1 81 VAL 81 80 80 VAL VAL A . n A 1 82 ALA 82 81 81 ALA ALA A . n A 1 83 VAL 83 82 82 VAL VAL A . n A 1 84 GLU 84 83 83 GLU GLU A . n A 1 85 LEU 85 84 84 LEU LEU A . n A 1 86 LYS 86 85 85 LYS LYS A . n A 1 87 SER 87 86 86 SER SER A . n A 1 88 LEU 88 87 87 LEU LEU A . n A 1 89 LEU 89 88 88 LEU LEU A . n A 1 90 GLY 90 89 89 GLY GLY A . n A 1 91 LYS 91 90 90 LYS LYS A . n A 1 92 ASP 92 91 91 ASP ASP A . n A 1 93 VAL 93 92 92 VAL VAL A . n A 1 94 LEU 94 93 93 LEU LEU A . n A 1 95 PHE 95 94 94 PHE PHE A . n A 1 96 LEU 96 95 95 LEU LEU A . n A 1 97 LYS 97 96 96 LYS LYS A . n A 1 98 ASP 98 97 97 ASP ASP A . n A 1 99 CYS 99 98 98 CYS CYS A . n A 1 100 VAL 100 99 99 VAL VAL A . n A 1 101 GLY 101 100 100 GLY GLY A . n A 1 102 PRO 102 101 101 PRO PRO A . n A 1 103 GLU 103 102 102 GLU GLU A . n A 1 104 VAL 104 103 103 VAL VAL A . n A 1 105 GLU 105 104 104 GLU GLU A . n A 1 106 LYS 106 105 105 LYS LYS A . n A 1 107 ALA 107 106 106 ALA ALA A . n A 1 108 CYS 108 107 107 CYS CYS A . n A 1 109 ALA 109 108 108 ALA ALA A . n A 1 110 ASN 110 109 109 ASN ASN A . n A 1 111 PRO 111 110 110 PRO PRO A . n A 1 112 ALA 112 111 111 ALA ALA A . n A 1 113 ALA 113 112 112 ALA ALA A . n A 1 114 GLY 114 113 113 GLY GLY A . n A 1 115 SER 115 114 114 SER SER A . n A 1 116 VAL 116 115 115 VAL VAL A . n A 1 117 ILE 117 116 116 ILE ILE A . n A 1 118 LEU 118 117 117 LEU LEU A . n A 1 119 LEU 119 118 118 LEU LEU A . n A 1 120 GLU 120 119 119 GLU GLU A . n A 1 121 ASN 121 120 120 ASN ASN A . n A 1 122 LEU 122 121 121 LEU LEU A . n A 1 123 ARG 123 122 122 ARG ARG A . n A 1 124 PHE 124 123 123 PHE PHE A . n A 1 125 HIS 125 124 124 HIS HIS A . n A 1 126 VAL 126 125 125 VAL VAL A . n A 1 127 GLU 127 126 126 GLU GLU A . n A 1 128 GLU 128 127 127 GLU GLU A . n A 1 129 GLU 129 128 128 GLU GLU A . n A 1 130 GLY 130 129 129 GLY GLY A . n A 1 131 LYS 131 130 130 LYS LYS A . n A 1 132 GLY 132 131 131 GLY GLY A . n A 1 133 LYS 133 132 132 LYS LYS A . n A 1 134 ASP 134 133 ? ? ? A . n A 1 135 ALA 135 134 ? ? ? A . n A 1 136 SER 136 135 ? ? ? A . n A 1 137 GLY 137 136 ? ? ? A . n A 1 138 ASN 138 137 ? ? ? A . n A 1 139 LYS 139 138 138 LYS LYS A . n A 1 140 VAL 140 139 139 VAL VAL A . n A 1 141 LYS 141 140 140 LYS LYS A . n A 1 142 ALA 142 141 141 ALA ALA A . n A 1 143 GLU 143 142 142 GLU GLU A . n A 1 144 PRO 144 143 143 PRO PRO A . n A 1 145 ALA 145 144 144 ALA ALA A . n A 1 146 LYS 146 145 145 LYS LYS A . n A 1 147 ILE 147 146 146 ILE ILE A . n A 1 148 GLU 148 147 147 GLU GLU A . n A 1 149 ALA 149 148 148 ALA ALA A . n A 1 150 PHE 150 149 149 PHE PHE A . n A 1 151 ARG 151 150 150 ARG ARG A . n A 1 152 ALA 152 151 151 ALA ALA A . n A 1 153 SER 153 152 152 SER SER A . n A 1 154 LEU 154 153 153 LEU LEU A . n A 1 155 SER 155 154 154 SER SER A . n A 1 156 LYS 156 155 155 LYS LYS A . n A 1 157 LEU 157 156 156 LEU LEU A . n A 1 158 GLY 158 157 157 GLY GLY A . n A 1 159 ASP 159 158 158 ASP ASP A . n A 1 160 VAL 160 159 159 VAL VAL A . n A 1 161 TYR 161 160 160 TYR TYR A . n A 1 162 VAL 162 161 161 VAL VAL A . n A 1 163 ASN 163 162 162 ASN ASN A . n A 1 164 ASP 164 163 163 ASP ASP A . n A 1 165 ALA 165 164 164 ALA ALA A . n A 1 166 PHE 166 165 165 PHE PHE A . n A 1 167 GLY 167 166 166 GLY GLY A . n A 1 168 THR 168 167 167 THR THR A . n A 1 169 ALA 169 168 168 ALA ALA A . n A 1 170 HIS 170 169 169 HIS HIS A . n A 1 171 ARG 171 170 170 ARG ARG A . n A 1 172 ALA 172 171 171 ALA ALA A . n A 1 173 HIS 173 172 172 HIS HIS A . n A 1 174 SER 174 173 173 SER SER A . n A 1 175 SER 175 174 174 SER SER A . n A 1 176 MET 176 175 175 MET MET A . n A 1 177 VAL 177 176 176 VAL VAL A . n A 1 178 GLY 178 177 177 GLY GLY A . n A 1 179 VAL 179 178 178 VAL VAL A . n A 1 180 ASN 180 179 179 ASN ASN A . n A 1 181 LEU 181 180 180 LEU LEU A . n A 1 182 PRO 182 181 181 PRO PRO A . n A 1 183 GLN 183 182 182 GLN GLN A . n A 1 184 LYS 184 183 183 LYS LYS A . n A 1 185 ALA 185 184 184 ALA ALA A . n A 1 186 GLY 186 185 185 GLY GLY A . n A 1 187 GLY 187 186 186 GLY GLY A . n A 1 188 PHE 188 187 187 PHE PHE A . n A 1 189 LEU 189 188 188 LEU LEU A . n A 1 190 MET 190 189 189 MET MET A . n A 1 191 LYS 191 190 190 LYS LYS A . n A 1 192 LYS 192 191 191 LYS LYS A . n A 1 193 GLU 193 192 192 GLU GLU A . n A 1 194 LEU 194 193 193 LEU LEU A . n A 1 195 ASN 195 194 194 ASN ASN A . n A 1 196 TYR 196 195 195 TYR TYR A . n A 1 197 PHE 197 196 196 PHE PHE A . n A 1 198 ALA 198 197 197 ALA ALA A . n A 1 199 LYS 199 198 198 LYS LYS A . n A 1 200 ALA 200 199 199 ALA ALA A . n A 1 201 LEU 201 200 200 LEU LEU A . n A 1 202 GLU 202 201 201 GLU GLU A . n A 1 203 SER 203 202 202 SER SER A . n A 1 204 PRO 204 203 203 PRO PRO A . n A 1 205 GLU 205 204 204 GLU GLU A . n A 1 206 ARG 206 205 205 ARG ARG A . n A 1 207 PRO 207 206 206 PRO PRO A . n A 1 208 PHE 208 207 207 PHE PHE A . n A 1 209 LEU 209 208 208 LEU LEU A . n A 1 210 ALA 210 209 209 ALA ALA A . n A 1 211 ILE 211 210 210 ILE ILE A . n A 1 212 LEU 212 211 211 LEU LEU A . n A 1 213 GLY 213 212 212 GLY GLY A . n A 1 214 GLY 214 213 213 GLY GLY A . n A 1 215 ALA 215 214 214 ALA ALA A . n A 1 216 LYS 216 215 215 LYS LYS A . n A 1 217 VAL 217 216 216 VAL VAL A . n A 1 218 ALA 218 217 217 ALA ALA A . n A 1 219 ASP 219 218 218 ASP ASP A . n A 1 220 LYS 220 219 219 LYS LYS A . n A 1 221 ILE 221 220 220 ILE ILE A . n A 1 222 GLN 222 221 221 GLN GLN A . n A 1 223 LEU 223 222 222 LEU LEU A . n A 1 224 ILE 224 223 223 ILE ILE A . n A 1 225 ASN 225 224 224 ASN ASN A . n A 1 226 ASN 226 225 225 ASN ASN A . n A 1 227 MET 227 226 226 MET MET A . n A 1 228 LEU 228 227 227 LEU LEU A . n A 1 229 ASP 229 228 228 ASP ASP A . n A 1 230 LYS 230 229 229 LYS LYS A . n A 1 231 VAL 231 230 230 VAL VAL A . n A 1 232 ASN 232 231 231 ASN ASN A . n A 1 233 GLU 233 232 232 GLU GLU A . n A 1 234 MET 234 233 233 MET MET A . n A 1 235 ILE 235 234 234 ILE ILE A . n A 1 236 ILE 236 235 235 ILE ILE A . n A 1 237 GLY 237 236 236 GLY GLY A . n A 1 238 GLY 238 237 237 GLY GLY A . n A 1 239 GLY 239 238 238 GLY GLY A . n A 1 240 MET 240 239 239 MET MET A . n A 1 241 ALA 241 240 240 ALA ALA A . n A 1 242 PHE 242 241 241 PHE PHE A . n A 1 243 THR 243 242 242 THR THR A . n A 1 244 PHE 244 243 243 PHE PHE A . n A 1 245 LEU 245 244 244 LEU LEU A . n A 1 246 LYS 246 245 245 LYS LYS A . n A 1 247 VAL 247 246 246 VAL VAL A . n A 1 248 LEU 248 247 247 LEU LEU A . n A 1 249 ASN 249 248 248 ASN ASN A . n A 1 250 ASN 250 249 249 ASN ASN A . n A 1 251 MET 251 250 250 MET MET A . n A 1 252 GLU 252 251 251 GLU GLU A . n A 1 253 ILE 253 252 252 ILE ILE A . n A 1 254 GLY 254 253 253 GLY GLY A . n A 1 255 THR 255 254 254 THR THR A . n A 1 256 SER 256 255 255 SER SER A . n A 1 257 LEU 257 256 256 LEU LEU A . n A 1 258 PHE 258 257 257 PHE PHE A . n A 1 259 ASP 259 258 258 ASP ASP A . n A 1 260 GLU 260 259 259 GLU GLU A . n A 1 261 GLU 261 260 260 GLU GLU A . n A 1 262 GLY 262 261 261 GLY GLY A . n A 1 263 ALA 263 262 262 ALA ALA A . n A 1 264 LYS 264 263 263 LYS LYS A . n A 1 265 ILE 265 264 264 ILE ILE A . n A 1 266 VAL 266 265 265 VAL VAL A . n A 1 267 LYS 267 266 266 LYS LYS A . n A 1 268 ASP 268 267 267 ASP ASP A . n A 1 269 LEU 269 268 268 LEU LEU A . n A 1 270 MET 270 269 269 MET MET A . n A 1 271 SER 271 270 270 SER SER A . n A 1 272 LYS 272 271 271 LYS LYS A . n A 1 273 ALA 273 272 272 ALA ALA A . n A 1 274 GLU 274 273 273 GLU GLU A . n A 1 275 LYS 275 274 274 LYS LYS A . n A 1 276 ASN 276 275 275 ASN ASN A . n A 1 277 GLY 277 276 276 GLY GLY A . n A 1 278 VAL 278 277 277 VAL VAL A . n A 1 279 LYS 279 278 278 LYS LYS A . n A 1 280 ILE 280 279 279 ILE ILE A . n A 1 281 THR 281 280 280 THR THR A . n A 1 282 LEU 282 281 281 LEU LEU A . n A 1 283 PRO 283 282 282 PRO PRO A . n A 1 284 VAL 284 283 283 VAL VAL A . n A 1 285 ASP 285 284 284 ASP ASP A . n A 1 286 PHE 286 285 285 PHE PHE A . n A 1 287 VAL 287 286 286 VAL VAL A . n A 1 288 THR 288 287 287 THR THR A . n A 1 289 ALA 289 288 288 ALA ALA A . n A 1 290 ASP 290 289 289 ASP ASP A . n A 1 291 LYS 291 290 290 LYS LYS A . n A 1 292 PHE 292 291 291 PHE PHE A . n A 1 293 ASP 293 292 292 ASP ASP A . n A 1 294 GLU 294 293 293 GLU GLU A . n A 1 295 ASN 295 294 294 ASN ASN A . n A 1 296 ALA 296 295 295 ALA ALA A . n A 1 297 LYS 297 296 296 LYS LYS A . n A 1 298 THR 298 297 297 THR THR A . n A 1 299 GLY 299 298 298 GLY GLY A . n A 1 300 GLN 300 299 299 GLN GLN A . n A 1 301 ALA 301 300 300 ALA ALA A . n A 1 302 THR 302 301 301 THR THR A . n A 1 303 VAL 303 302 302 VAL VAL A . n A 1 304 ALA 304 303 303 ALA ALA A . n A 1 305 SER 305 304 304 SER SER A . n A 1 306 GLY 306 305 305 GLY GLY A . n A 1 307 ILE 307 306 306 ILE ILE A . n A 1 308 PRO 308 307 307 PRO PRO A . n A 1 309 ALA 309 308 308 ALA ALA A . n A 1 310 GLY 310 309 309 GLY GLY A . n A 1 311 TRP 311 310 310 TRP TRP A . n A 1 312 MET 312 311 311 MET MET A . n A 1 313 GLY 313 312 312 GLY GLY A . n A 1 314 LEU 314 313 313 LEU LEU A . n A 1 315 ASP 315 314 314 ASP ASP A . n A 1 316 CYS 316 315 315 CYS CYS A . n A 1 317 GLY 317 316 316 GLY GLY A . n A 1 318 PRO 318 317 317 PRO PRO A . n A 1 319 GLU 319 318 318 GLU GLU A . n A 1 320 SER 320 319 319 SER SER A . n A 1 321 SER 321 320 320 SER SER A . n A 1 322 LYS 322 321 321 LYS LYS A . n A 1 323 LYS 323 322 322 LYS LYS A . n A 1 324 TYR 324 323 323 TYR TYR A . n A 1 325 ALA 325 324 324 ALA ALA A . n A 1 326 GLU 326 325 325 GLU GLU A . n A 1 327 ALA 327 326 326 ALA ALA A . n A 1 328 VAL 328 327 327 VAL VAL A . n A 1 329 THR 329 328 328 THR THR A . n A 1 330 ARG 330 329 329 ARG ARG A . n A 1 331 ALA 331 330 330 ALA ALA A . n A 1 332 LYS 332 331 331 LYS LYS A . n A 1 333 GLN 333 332 332 GLN GLN A . n A 1 334 ILE 334 333 333 ILE ILE A . n A 1 335 VAL 335 334 334 VAL VAL A . n A 1 336 TRP 336 335 335 TRP TRP A . n A 1 337 ASN 337 336 336 ASN ASN A . n A 1 338 GLY 338 337 337 GLY GLY A . n A 1 339 PRO 339 338 338 PRO PRO A . n A 1 340 VAL 340 339 339 VAL VAL A . n A 1 341 GLY 341 340 340 GLY GLY A . n A 1 342 VAL 342 341 341 VAL VAL A . n A 1 343 PHE 343 342 342 PHE PHE A . n A 1 344 GLU 344 343 343 GLU GLU A . n A 1 345 TRP 345 344 344 TRP TRP A . n A 1 346 GLU 346 345 345 GLU GLU A . n A 1 347 ALA 347 346 346 ALA ALA A . n A 1 348 PHE 348 347 347 PHE PHE A . n A 1 349 ALA 349 348 348 ALA ALA A . n A 1 350 ARG 350 349 349 ARG ARG A . n A 1 351 GLY 351 350 350 GLY GLY A . n A 1 352 THR 352 351 351 THR THR A . n A 1 353 LYS 353 352 352 LYS LYS A . n A 1 354 ALA 354 353 353 ALA ALA A . n A 1 355 LEU 355 354 354 LEU LEU A . n A 1 356 MET 356 355 355 MET MET A . n A 1 357 ASP 357 356 356 ASP ASP A . n A 1 358 GLU 358 357 357 GLU GLU A . n A 1 359 VAL 359 358 358 VAL VAL A . n A 1 360 VAL 360 359 359 VAL VAL A . n A 1 361 LYS 361 360 360 LYS LYS A . n A 1 362 ALA 362 361 361 ALA ALA A . n A 1 363 THR 363 362 362 THR THR A . n A 1 364 SER 364 363 363 SER SER A . n A 1 365 ARG 365 364 364 ARG ARG A . n A 1 366 GLY 366 365 365 GLY GLY A . n A 1 367 CYS 367 366 366 CYS CYS A . n A 1 368 ILE 368 367 367 ILE ILE A . n A 1 369 THR 369 368 368 THR THR A . n A 1 370 ILE 370 369 369 ILE ILE A . n A 1 371 ILE 371 370 370 ILE ILE A . n A 1 372 GLY 372 371 371 GLY GLY A . n A 1 373 GLY 373 372 372 GLY GLY A . n A 1 374 GLY 374 373 373 GLY GLY A . n A 1 375 ASP 375 374 374 ASP ASP A . n A 1 376 THR 376 375 375 THR THR A . n A 1 377 ALA 377 376 376 ALA ALA A . n A 1 378 THR 378 377 377 THR THR A . n A 1 379 CYS 379 378 378 CYS CYS A . n A 1 380 CYS 380 379 379 CYS CYS A . n A 1 381 ALA 381 380 380 ALA ALA A . n A 1 382 LYS 382 381 381 LYS LYS A . n A 1 383 TRP 383 382 382 TRP TRP A . n A 1 384 ASN 384 383 383 ASN ASN A . n A 1 385 THR 385 384 384 THR THR A . n A 1 386 GLU 386 385 385 GLU GLU A . n A 1 387 ASP 387 386 386 ASP ASP A . n A 1 388 LYS 388 387 387 LYS LYS A . n A 1 389 VAL 389 388 388 VAL VAL A . n A 1 390 SER 390 389 389 SER SER A . n A 1 391 HIS 391 390 390 HIS HIS A . n A 1 392 VAL 392 391 391 VAL VAL A . n A 1 393 SER 393 392 392 SER SER A . n A 1 394 THR 394 393 393 THR THR A . n A 1 395 GLY 395 394 394 GLY GLY A . n A 1 396 GLY 396 395 395 GLY GLY A . n A 1 397 GLY 397 396 396 GLY GLY A . n A 1 398 ALA 398 397 397 ALA ALA A . n A 1 399 SER 399 398 398 SER SER A . n A 1 400 LEU 400 399 399 LEU LEU A . n A 1 401 GLU 401 400 400 GLU GLU A . n A 1 402 LEU 402 401 401 LEU LEU A . n A 1 403 LEU 403 402 402 LEU LEU A . n A 1 404 GLU 404 403 403 GLU GLU A . n A 1 405 GLY 405 404 404 GLY GLY A . n A 1 406 LYS 406 405 405 LYS LYS A . n A 1 407 VAL 407 406 406 VAL VAL A . n A 1 408 LEU 408 407 407 LEU LEU A . n A 1 409 PRO 409 408 408 PRO PRO A . n A 1 410 GLY 410 409 409 GLY GLY A . n A 1 411 VAL 411 410 410 VAL VAL A . n A 1 412 ASP 412 411 411 ASP ASP A . n A 1 413 ALA 413 412 412 ALA ALA A . n A 1 414 LEU 414 413 413 LEU LEU A . n A 1 415 SER 415 414 414 SER SER A . n A 1 416 ASN 416 415 415 ASN ASN A . n A 1 417 ILE 417 416 416 ILE ILE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 1417 1417 MG MG A . C 3 CL 1 1418 1418 CL CL A . D 4 LA8 1 1419 1419 LA8 LA8 A . E 5 ALF 1 1420 1420 ALF ALF A . F 6 3PG 1 1421 1421 3PG 3PG A . G 7 HOH 1 2001 2001 HOH HOH A . G 7 HOH 2 2002 2002 HOH HOH A . G 7 HOH 3 2003 2003 HOH HOH A . G 7 HOH 4 2004 2004 HOH HOH A . G 7 HOH 5 2005 2005 HOH HOH A . G 7 HOH 6 2006 2006 HOH HOH A . G 7 HOH 7 2007 2007 HOH HOH A . G 7 HOH 8 2008 2008 HOH HOH A . G 7 HOH 9 2009 2009 HOH HOH A . G 7 HOH 10 2010 2010 HOH HOH A . G 7 HOH 11 2011 2011 HOH HOH A . G 7 HOH 12 2012 2012 HOH HOH A . G 7 HOH 13 2013 2013 HOH HOH A . G 7 HOH 14 2014 2014 HOH HOH A . G 7 HOH 15 2015 2015 HOH HOH A . G 7 HOH 16 2016 2016 HOH HOH A . G 7 HOH 17 2017 2017 HOH HOH A . G 7 HOH 18 2018 2018 HOH HOH A . G 7 HOH 19 2019 2019 HOH HOH A . G 7 HOH 20 2020 2020 HOH HOH A . G 7 HOH 21 2021 2021 HOH HOH A . G 7 HOH 22 2022 2022 HOH HOH A . G 7 HOH 23 2023 2023 HOH HOH A . G 7 HOH 24 2024 2024 HOH HOH A . G 7 HOH 25 2025 2025 HOH HOH A . G 7 HOH 26 2026 2026 HOH HOH A . G 7 HOH 27 2027 2027 HOH HOH A . G 7 HOH 28 2028 2028 HOH HOH A . G 7 HOH 29 2029 2029 HOH HOH A . G 7 HOH 30 2030 2030 HOH HOH A . G 7 HOH 31 2031 2031 HOH HOH A . G 7 HOH 32 2032 2032 HOH HOH A . G 7 HOH 33 2033 2033 HOH HOH A . G 7 HOH 34 2034 2034 HOH HOH A . G 7 HOH 35 2035 2035 HOH HOH A . G 7 HOH 36 2036 2036 HOH HOH A . G 7 HOH 37 2037 2037 HOH HOH A . G 7 HOH 38 2038 2038 HOH HOH A . G 7 HOH 39 2039 2039 HOH HOH A . G 7 HOH 40 2040 2040 HOH HOH A . G 7 HOH 41 2041 2041 HOH HOH A . G 7 HOH 42 2042 2042 HOH HOH A . G 7 HOH 43 2043 2043 HOH HOH A . G 7 HOH 44 2044 2044 HOH HOH A . G 7 HOH 45 2045 2045 HOH HOH A . G 7 HOH 46 2046 2046 HOH HOH A . G 7 HOH 47 2047 2047 HOH HOH A . G 7 HOH 48 2048 2048 HOH HOH A . G 7 HOH 49 2049 2049 HOH HOH A . G 7 HOH 50 2050 2050 HOH HOH A . G 7 HOH 51 2051 2051 HOH HOH A . G 7 HOH 52 2052 2052 HOH HOH A . G 7 HOH 53 2053 2053 HOH HOH A . G 7 HOH 54 2054 2054 HOH HOH A . G 7 HOH 55 2055 2055 HOH HOH A . G 7 HOH 56 2056 2056 HOH HOH A . G 7 HOH 57 2057 2057 HOH HOH A . G 7 HOH 58 2058 2058 HOH HOH A . G 7 HOH 59 2059 2059 HOH HOH A . G 7 HOH 60 2060 2060 HOH HOH A . G 7 HOH 61 2061 2061 HOH HOH A . G 7 HOH 62 2062 2062 HOH HOH A . G 7 HOH 63 2063 2063 HOH HOH A . G 7 HOH 64 2064 2064 HOH HOH A . G 7 HOH 65 2065 2065 HOH HOH A . G 7 HOH 66 2066 2066 HOH HOH A . G 7 HOH 67 2067 2067 HOH HOH A . G 7 HOH 68 2068 2068 HOH HOH A . G 7 HOH 69 2069 2069 HOH HOH A . G 7 HOH 70 2070 2070 HOH HOH A . G 7 HOH 71 2071 2071 HOH HOH A . G 7 HOH 72 2072 2072 HOH HOH A . G 7 HOH 73 2073 2073 HOH HOH A . G 7 HOH 74 2074 2074 HOH HOH A . G 7 HOH 75 2075 2075 HOH HOH A . G 7 HOH 76 2076 2076 HOH HOH A . G 7 HOH 77 2077 2077 HOH HOH A . G 7 HOH 78 2078 2078 HOH HOH A . G 7 HOH 79 2079 2079 HOH HOH A . G 7 HOH 80 2080 2080 HOH HOH A . G 7 HOH 81 2081 2081 HOH HOH A . G 7 HOH 82 2082 2082 HOH HOH A . G 7 HOH 83 2083 2083 HOH HOH A . G 7 HOH 84 2084 2084 HOH HOH A . G 7 HOH 85 2085 2085 HOH HOH A . G 7 HOH 86 2086 2086 HOH HOH A . G 7 HOH 87 2087 2087 HOH HOH A . G 7 HOH 88 2088 2088 HOH HOH A . G 7 HOH 89 2089 2089 HOH HOH A . G 7 HOH 90 2090 2090 HOH HOH A . G 7 HOH 91 2091 2091 HOH HOH A . G 7 HOH 92 2092 2092 HOH HOH A . G 7 HOH 93 2093 2093 HOH HOH A . G 7 HOH 94 2094 2094 HOH HOH A . G 7 HOH 95 2095 2095 HOH HOH A . G 7 HOH 96 2096 2096 HOH HOH A . G 7 HOH 97 2097 2097 HOH HOH A . G 7 HOH 98 2098 2098 HOH HOH A . G 7 HOH 99 2099 2099 HOH HOH A . G 7 HOH 100 2100 2100 HOH HOH A . G 7 HOH 101 2101 2101 HOH HOH A . G 7 HOH 102 2102 2102 HOH HOH A . G 7 HOH 103 2103 2103 HOH HOH A . G 7 HOH 104 2104 2104 HOH HOH A . G 7 HOH 105 2105 2105 HOH HOH A . G 7 HOH 106 2106 2106 HOH HOH A . G 7 HOH 107 2107 2107 HOH HOH A . G 7 HOH 108 2108 2108 HOH HOH A . G 7 HOH 109 2109 2109 HOH HOH A . G 7 HOH 110 2110 2110 HOH HOH A . G 7 HOH 111 2111 2111 HOH HOH A . G 7 HOH 112 2112 2112 HOH HOH A . G 7 HOH 113 2113 2113 HOH HOH A . G 7 HOH 114 2114 2114 HOH HOH A . G 7 HOH 115 2115 2115 HOH HOH A . G 7 HOH 116 2116 2116 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 375 ? A ASP 374 ? 1_555 MG ? B MG . ? A MG 1417 ? 1_555 O3B ? D LA8 . ? A LA8 1419 ? 1_555 98.6 ? 2 OD2 ? A ASP 375 ? A ASP 374 ? 1_555 MG ? B MG . ? A MG 1417 ? 1_555 O1A ? D LA8 . ? A LA8 1419 ? 1_555 99.6 ? 3 O3B ? D LA8 . ? A LA8 1419 ? 1_555 MG ? B MG . ? A MG 1417 ? 1_555 O1A ? D LA8 . ? A LA8 1419 ? 1_555 97.2 ? 4 OD2 ? A ASP 375 ? A ASP 374 ? 1_555 MG ? B MG . ? A MG 1417 ? 1_555 O ? G HOH . ? A HOH 2112 ? 1_555 87.1 ? 5 O3B ? D LA8 . ? A LA8 1419 ? 1_555 MG ? B MG . ? A MG 1417 ? 1_555 O ? G HOH . ? A HOH 2112 ? 1_555 173.1 ? 6 O1A ? D LA8 . ? A LA8 1419 ? 1_555 MG ? B MG . ? A MG 1417 ? 1_555 O ? G HOH . ? A HOH 2112 ? 1_555 77.9 ? 7 OD2 ? A ASP 375 ? A ASP 374 ? 1_555 MG ? B MG . ? A MG 1417 ? 1_555 O ? G HOH . ? A HOH 2115 ? 1_555 93.7 ? 8 O3B ? D LA8 . ? A LA8 1419 ? 1_555 MG ? B MG . ? A MG 1417 ? 1_555 O ? G HOH . ? A HOH 2115 ? 1_555 99.8 ? 9 O1A ? D LA8 . ? A LA8 1419 ? 1_555 MG ? B MG . ? A MG 1417 ? 1_555 O ? G HOH . ? A HOH 2115 ? 1_555 156.6 ? 10 O ? G HOH . ? A HOH 2112 ? 1_555 MG ? B MG . ? A MG 1417 ? 1_555 O ? G HOH . ? A HOH 2115 ? 1_555 83.6 ? 11 O1B ? D LA8 . ? A LA8 1419 ? 1_555 AL ? E ALF . ? A ALF 1420 ? 1_555 F1 ? E ALF . ? A ALF 1420 ? 1_555 84.0 ? 12 O1B ? D LA8 . ? A LA8 1419 ? 1_555 AL ? E ALF . ? A ALF 1420 ? 1_555 F2 ? E ALF . ? A ALF 1420 ? 1_555 86.3 ? 13 F1 ? E ALF . ? A ALF 1420 ? 1_555 AL ? E ALF . ? A ALF 1420 ? 1_555 F2 ? E ALF . ? A ALF 1420 ? 1_555 89.0 ? 14 O1B ? D LA8 . ? A LA8 1419 ? 1_555 AL ? E ALF . ? A ALF 1420 ? 1_555 F3 ? E ALF . ? A ALF 1420 ? 1_555 93.0 ? 15 F1 ? E ALF . ? A ALF 1420 ? 1_555 AL ? E ALF . ? A ALF 1420 ? 1_555 F3 ? E ALF . ? A ALF 1420 ? 1_555 90.5 ? 16 F2 ? E ALF . ? A ALF 1420 ? 1_555 AL ? E ALF . ? A ALF 1420 ? 1_555 F3 ? E ALF . ? A ALF 1420 ? 1_555 179.2 ? 17 O1B ? D LA8 . ? A LA8 1419 ? 1_555 AL ? E ALF . ? A ALF 1420 ? 1_555 F4 ? E ALF . ? A ALF 1420 ? 1_555 96.6 ? 18 F1 ? E ALF . ? A ALF 1420 ? 1_555 AL ? E ALF . ? A ALF 1420 ? 1_555 F4 ? E ALF . ? A ALF 1420 ? 1_555 179.1 ? 19 F2 ? E ALF . ? A ALF 1420 ? 1_555 AL ? E ALF . ? A ALF 1420 ? 1_555 F4 ? E ALF . ? A ALF 1420 ? 1_555 91.6 ? 20 F3 ? E ALF . ? A ALF 1420 ? 1_555 AL ? E ALF . ? A ALF 1420 ? 1_555 F4 ? E ALF . ? A ALF 1420 ? 1_555 88.8 ? 21 O1B ? D LA8 . ? A LA8 1419 ? 1_555 AL ? E ALF . ? A ALF 1420 ? 1_555 O2 ? F 3PG . ? A 3PG 1421 ? 1_555 175.4 ? 22 F1 ? E ALF . ? A ALF 1420 ? 1_555 AL ? E ALF . ? A ALF 1420 ? 1_555 O2 ? F 3PG . ? A 3PG 1421 ? 1_555 91.5 ? 23 F2 ? E ALF . ? A ALF 1420 ? 1_555 AL ? E ALF . ? A ALF 1420 ? 1_555 O2 ? F 3PG . ? A 3PG 1421 ? 1_555 94.1 ? 24 F3 ? E ALF . ? A ALF 1420 ? 1_555 AL ? E ALF . ? A ALF 1420 ? 1_555 O2 ? F 3PG . ? A 3PG 1421 ? 1_555 86.5 ? 25 F4 ? E ALF . ? A ALF 1420 ? 1_555 AL ? E ALF . ? A ALF 1420 ? 1_555 O2 ? F 3PG . ? A 3PG 1421 ? 1_555 87.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-04-27 2 'Structure model' 1 1 2011-06-23 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' 4 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 1.4060 _pdbx_refine_tls.origin_y -7.2070 _pdbx_refine_tls.origin_z -19.4120 _pdbx_refine_tls.T[1][1] 1.0909 _pdbx_refine_tls.T[2][2] 0.9225 _pdbx_refine_tls.T[3][3] 0.0280 _pdbx_refine_tls.T[1][2] -0.2032 _pdbx_refine_tls.T[1][3] -0.0527 _pdbx_refine_tls.T[2][3] -0.1268 _pdbx_refine_tls.L[1][1] 2.0711 _pdbx_refine_tls.L[2][2] 1.7213 _pdbx_refine_tls.L[3][3] 4.8596 _pdbx_refine_tls.L[1][2] 0.4660 _pdbx_refine_tls.L[1][3] -0.7515 _pdbx_refine_tls.L[2][3] -0.8805 _pdbx_refine_tls.S[1][1] -0.2872 _pdbx_refine_tls.S[1][2] 1.2534 _pdbx_refine_tls.S[1][3] -0.1460 _pdbx_refine_tls.S[2][1] -1.3017 _pdbx_refine_tls.S[2][2] 0.3470 _pdbx_refine_tls.S[2][3] 0.0395 _pdbx_refine_tls.S[3][1] 0.7461 _pdbx_refine_tls.S[3][2] -0.5992 _pdbx_refine_tls.S[3][3] -0.0597 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 2 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 416 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.6.0107 ? 1 XDS 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_entry_details.entry_id 2YBE _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;ADENOSINE-5'-DIPHOSPHATE (ADP): THIS IS THE L-ENANTIOMER OF ADP ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 C A LYS 132 ? ? O A HOH 2040 ? ? 1.66 2 1 NZ A LYS 10 ? ? O A HOH 2003 ? ? 2.10 3 1 ND1 A HIS 390 ? ? O A HOH 2098 ? ? 2.15 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 NZ A LYS 105 ? ? 1_555 OE2 A GLU 201 ? ? 2_554 1.74 2 1 O A ALA 112 ? ? 1_555 NZ A LYS 321 ? ? 2_454 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 109 ? ? -154.25 72.54 2 1 ASN A 120 ? ? -31.56 111.65 3 1 ASN A 249 ? ? 39.23 38.88 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLU _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 128 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLY _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 129 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -46.82 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? A MET 1 2 1 Y 1 A SER 1 ? A SER 2 3 1 Y 1 A ASP 133 ? A ASP 134 4 1 Y 1 A ALA 134 ? A ALA 135 5 1 Y 1 A SER 135 ? A SER 136 6 1 Y 1 A GLY 136 ? A GLY 137 7 1 Y 1 A ASN 137 ? A ASN 138 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3PG C1 C N N 1 3PG O1 O N N 2 3PG O2 O N N 3 3PG C2 C N R 4 3PG O3 O N N 5 3PG C3 C N N 6 3PG O1P O N N 7 3PG P P N N 8 3PG O2P O N N 9 3PG O3P O N N 10 3PG O4P O N N 11 3PG HO2 H N N 12 3PG H2 H N N 13 3PG HO3 H N N 14 3PG H31 H N N 15 3PG H32 H N N 16 3PG HOP3 H N N 17 3PG HOP4 H N N 18 ALA N N N N 19 ALA CA C N S 20 ALA C C N N 21 ALA O O N N 22 ALA CB C N N 23 ALA OXT O N N 24 ALA H H N N 25 ALA H2 H N N 26 ALA HA H N N 27 ALA HB1 H N N 28 ALA HB2 H N N 29 ALA HB3 H N N 30 ALA HXT H N N 31 ALF AL AL N N 32 ALF F1 F N N 33 ALF F2 F N N 34 ALF F3 F N N 35 ALF F4 F N N 36 ARG N N N N 37 ARG CA C N S 38 ARG C C N N 39 ARG O O N N 40 ARG CB C N N 41 ARG CG C N N 42 ARG CD C N N 43 ARG NE N N N 44 ARG CZ C N N 45 ARG NH1 N N N 46 ARG NH2 N N N 47 ARG OXT O N N 48 ARG H H N N 49 ARG H2 H N N 50 ARG HA H N N 51 ARG HB2 H N N 52 ARG HB3 H N N 53 ARG HG2 H N N 54 ARG HG3 H N N 55 ARG HD2 H N N 56 ARG HD3 H N N 57 ARG HE H N N 58 ARG HH11 H N N 59 ARG HH12 H N N 60 ARG HH21 H N N 61 ARG HH22 H N N 62 ARG HXT H N N 63 ASN N N N N 64 ASN CA C N S 65 ASN C C N N 66 ASN O O N N 67 ASN CB C N N 68 ASN CG C N N 69 ASN OD1 O N N 70 ASN ND2 N N N 71 ASN OXT O N N 72 ASN H H N N 73 ASN H2 H N N 74 ASN HA H N N 75 ASN HB2 H N N 76 ASN HB3 H N N 77 ASN HD21 H N N 78 ASN HD22 H N N 79 ASN HXT H N N 80 ASP N N N N 81 ASP CA C N S 82 ASP C C N N 83 ASP O O N N 84 ASP CB C N N 85 ASP CG C N N 86 ASP OD1 O N N 87 ASP OD2 O N N 88 ASP OXT O N N 89 ASP H H N N 90 ASP H2 H N N 91 ASP HA H N N 92 ASP HB2 H N N 93 ASP HB3 H N N 94 ASP HD2 H N N 95 ASP HXT H N N 96 CL CL CL N N 97 CYS N N N N 98 CYS CA C N R 99 CYS C C N N 100 CYS O O N N 101 CYS CB C N N 102 CYS SG S N N 103 CYS OXT O N N 104 CYS H H N N 105 CYS H2 H N N 106 CYS HA H N N 107 CYS HB2 H N N 108 CYS HB3 H N N 109 CYS HG H N N 110 CYS HXT H N N 111 GLN N N N N 112 GLN CA C N S 113 GLN C C N N 114 GLN O O N N 115 GLN CB C N N 116 GLN CG C N N 117 GLN CD C N N 118 GLN OE1 O N N 119 GLN NE2 N N N 120 GLN OXT O N N 121 GLN H H N N 122 GLN H2 H N N 123 GLN HA H N N 124 GLN HB2 H N N 125 GLN HB3 H N N 126 GLN HG2 H N N 127 GLN HG3 H N N 128 GLN HE21 H N N 129 GLN HE22 H N N 130 GLN HXT H N N 131 GLU N N N N 132 GLU CA C N S 133 GLU C C N N 134 GLU O O N N 135 GLU CB C N N 136 GLU CG C N N 137 GLU CD C N N 138 GLU OE1 O N N 139 GLU OE2 O N N 140 GLU OXT O N N 141 GLU H H N N 142 GLU H2 H N N 143 GLU HA H N N 144 GLU HB2 H N N 145 GLU HB3 H N N 146 GLU HG2 H N N 147 GLU HG3 H N N 148 GLU HE2 H N N 149 GLU HXT H N N 150 GLY N N N N 151 GLY CA C N N 152 GLY C C N N 153 GLY O O N N 154 GLY OXT O N N 155 GLY H H N N 156 GLY H2 H N N 157 GLY HA2 H N N 158 GLY HA3 H N N 159 GLY HXT H N N 160 HIS N N N N 161 HIS CA C N S 162 HIS C C N N 163 HIS O O N N 164 HIS CB C N N 165 HIS CG C Y N 166 HIS ND1 N Y N 167 HIS CD2 C Y N 168 HIS CE1 C Y N 169 HIS NE2 N Y N 170 HIS OXT O N N 171 HIS H H N N 172 HIS H2 H N N 173 HIS HA H N N 174 HIS HB2 H N N 175 HIS HB3 H N N 176 HIS HD1 H N N 177 HIS HD2 H N N 178 HIS HE1 H N N 179 HIS HE2 H N N 180 HIS HXT H N N 181 HOH O O N N 182 HOH H1 H N N 183 HOH H2 H N N 184 ILE N N N N 185 ILE CA C N S 186 ILE C C N N 187 ILE O O N N 188 ILE CB C N S 189 ILE CG1 C N N 190 ILE CG2 C N N 191 ILE CD1 C N N 192 ILE OXT O N N 193 ILE H H N N 194 ILE H2 H N N 195 ILE HA H N N 196 ILE HB H N N 197 ILE HG12 H N N 198 ILE HG13 H N N 199 ILE HG21 H N N 200 ILE HG22 H N N 201 ILE HG23 H N N 202 ILE HD11 H N N 203 ILE HD12 H N N 204 ILE HD13 H N N 205 ILE HXT H N N 206 LA8 N1 N Y N 207 LA8 C2 C Y N 208 LA8 N3 N Y N 209 LA8 C4 C Y N 210 LA8 C5 C Y N 211 LA8 C6 C Y N 212 LA8 N6 N N N 213 LA8 N7 N Y N 214 LA8 C8 C Y N 215 LA8 N9 N Y N 216 LA8 PA P N N 217 LA8 PB P N N 218 LA8 "C1'" C N S 219 LA8 O1A O N N 220 LA8 O1B O N N 221 LA8 "C2'" C N R 222 LA8 "O2'" O N N 223 LA8 O2A O N N 224 LA8 O2B O N N 225 LA8 "C3'" C N S 226 LA8 "O3'" O N N 227 LA8 O3A O N N 228 LA8 O3B O N N 229 LA8 "C4'" C N S 230 LA8 "O4'" O N N 231 LA8 "C5'" C N N 232 LA8 "O5'" O N N 233 LA8 H2 H N N 234 LA8 HN6 H N N 235 LA8 HN6A H N N 236 LA8 H8 H N N 237 LA8 "H1'" H N N 238 LA8 HO1B H N N 239 LA8 "H2'" H N N 240 LA8 "HO2'" H N N 241 LA8 HO2A H N N 242 LA8 "H3'" H N N 243 LA8 "HO3'" H N N 244 LA8 HO3B H N N 245 LA8 "H4'" H N N 246 LA8 "H5'" H N N 247 LA8 "H5'A" H N N 248 LEU N N N N 249 LEU CA C N S 250 LEU C C N N 251 LEU O O N N 252 LEU CB C N N 253 LEU CG C N N 254 LEU CD1 C N N 255 LEU CD2 C N N 256 LEU OXT O N N 257 LEU H H N N 258 LEU H2 H N N 259 LEU HA H N N 260 LEU HB2 H N N 261 LEU HB3 H N N 262 LEU HG H N N 263 LEU HD11 H N N 264 LEU HD12 H N N 265 LEU HD13 H N N 266 LEU HD21 H N N 267 LEU HD22 H N N 268 LEU HD23 H N N 269 LEU HXT H N N 270 LYS N N N N 271 LYS CA C N S 272 LYS C C N N 273 LYS O O N N 274 LYS CB C N N 275 LYS CG C N N 276 LYS CD C N N 277 LYS CE C N N 278 LYS NZ N N N 279 LYS OXT O N N 280 LYS H H N N 281 LYS H2 H N N 282 LYS HA H N N 283 LYS HB2 H N N 284 LYS HB3 H N N 285 LYS HG2 H N N 286 LYS HG3 H N N 287 LYS HD2 H N N 288 LYS HD3 H N N 289 LYS HE2 H N N 290 LYS HE3 H N N 291 LYS HZ1 H N N 292 LYS HZ2 H N N 293 LYS HZ3 H N N 294 LYS HXT H N N 295 MET N N N N 296 MET CA C N S 297 MET C C N N 298 MET O O N N 299 MET CB C N N 300 MET CG C N N 301 MET SD S N N 302 MET CE C N N 303 MET OXT O N N 304 MET H H N N 305 MET H2 H N N 306 MET HA H N N 307 MET HB2 H N N 308 MET HB3 H N N 309 MET HG2 H N N 310 MET HG3 H N N 311 MET HE1 H N N 312 MET HE2 H N N 313 MET HE3 H N N 314 MET HXT H N N 315 MG MG MG N N 316 PHE N N N N 317 PHE CA C N S 318 PHE C C N N 319 PHE O O N N 320 PHE CB C N N 321 PHE CG C Y N 322 PHE CD1 C Y N 323 PHE CD2 C Y N 324 PHE CE1 C Y N 325 PHE CE2 C Y N 326 PHE CZ C Y N 327 PHE OXT O N N 328 PHE H H N N 329 PHE H2 H N N 330 PHE HA H N N 331 PHE HB2 H N N 332 PHE HB3 H N N 333 PHE HD1 H N N 334 PHE HD2 H N N 335 PHE HE1 H N N 336 PHE HE2 H N N 337 PHE HZ H N N 338 PHE HXT H N N 339 PRO N N N N 340 PRO CA C N S 341 PRO C C N N 342 PRO O O N N 343 PRO CB C N N 344 PRO CG C N N 345 PRO CD C N N 346 PRO OXT O N N 347 PRO H H N N 348 PRO HA H N N 349 PRO HB2 H N N 350 PRO HB3 H N N 351 PRO HG2 H N N 352 PRO HG3 H N N 353 PRO HD2 H N N 354 PRO HD3 H N N 355 PRO HXT H N N 356 SER N N N N 357 SER CA C N S 358 SER C C N N 359 SER O O N N 360 SER CB C N N 361 SER OG O N N 362 SER OXT O N N 363 SER H H N N 364 SER H2 H N N 365 SER HA H N N 366 SER HB2 H N N 367 SER HB3 H N N 368 SER HG H N N 369 SER HXT H N N 370 THR N N N N 371 THR CA C N S 372 THR C C N N 373 THR O O N N 374 THR CB C N R 375 THR OG1 O N N 376 THR CG2 C N N 377 THR OXT O N N 378 THR H H N N 379 THR H2 H N N 380 THR HA H N N 381 THR HB H N N 382 THR HG1 H N N 383 THR HG21 H N N 384 THR HG22 H N N 385 THR HG23 H N N 386 THR HXT H N N 387 TRP N N N N 388 TRP CA C N S 389 TRP C C N N 390 TRP O O N N 391 TRP CB C N N 392 TRP CG C Y N 393 TRP CD1 C Y N 394 TRP CD2 C Y N 395 TRP NE1 N Y N 396 TRP CE2 C Y N 397 TRP CE3 C Y N 398 TRP CZ2 C Y N 399 TRP CZ3 C Y N 400 TRP CH2 C Y N 401 TRP OXT O N N 402 TRP H H N N 403 TRP H2 H N N 404 TRP HA H N N 405 TRP HB2 H N N 406 TRP HB3 H N N 407 TRP HD1 H N N 408 TRP HE1 H N N 409 TRP HE3 H N N 410 TRP HZ2 H N N 411 TRP HZ3 H N N 412 TRP HH2 H N N 413 TRP HXT H N N 414 TYR N N N N 415 TYR CA C N S 416 TYR C C N N 417 TYR O O N N 418 TYR CB C N N 419 TYR CG C Y N 420 TYR CD1 C Y N 421 TYR CD2 C Y N 422 TYR CE1 C Y N 423 TYR CE2 C Y N 424 TYR CZ C Y N 425 TYR OH O N N 426 TYR OXT O N N 427 TYR H H N N 428 TYR H2 H N N 429 TYR HA H N N 430 TYR HB2 H N N 431 TYR HB3 H N N 432 TYR HD1 H N N 433 TYR HD2 H N N 434 TYR HE1 H N N 435 TYR HE2 H N N 436 TYR HH H N N 437 TYR HXT H N N 438 VAL N N N N 439 VAL CA C N S 440 VAL C C N N 441 VAL O O N N 442 VAL CB C N N 443 VAL CG1 C N N 444 VAL CG2 C N N 445 VAL OXT O N N 446 VAL H H N N 447 VAL H2 H N N 448 VAL HA H N N 449 VAL HB H N N 450 VAL HG11 H N N 451 VAL HG12 H N N 452 VAL HG13 H N N 453 VAL HG21 H N N 454 VAL HG22 H N N 455 VAL HG23 H N N 456 VAL HXT H N N 457 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3PG C1 O1 doub N N 1 3PG C1 O2 sing N N 2 3PG C1 C2 sing N N 3 3PG O2 HO2 sing N N 4 3PG C2 O3 sing N N 5 3PG C2 C3 sing N N 6 3PG C2 H2 sing N N 7 3PG O3 HO3 sing N N 8 3PG C3 O1P sing N N 9 3PG C3 H31 sing N N 10 3PG C3 H32 sing N N 11 3PG O1P P sing N N 12 3PG P O2P doub N N 13 3PG P O3P sing N N 14 3PG P O4P sing N N 15 3PG O3P HOP3 sing N N 16 3PG O4P HOP4 sing N N 17 ALA N CA sing N N 18 ALA N H sing N N 19 ALA N H2 sing N N 20 ALA CA C sing N N 21 ALA CA CB sing N N 22 ALA CA HA sing N N 23 ALA C O doub N N 24 ALA C OXT sing N N 25 ALA CB HB1 sing N N 26 ALA CB HB2 sing N N 27 ALA CB HB3 sing N N 28 ALA OXT HXT sing N N 29 ALF AL F1 sing N N 30 ALF AL F2 sing N N 31 ALF AL F3 sing N N 32 ALF AL F4 sing N N 33 ARG N CA sing N N 34 ARG N H sing N N 35 ARG N H2 sing N N 36 ARG CA C sing N N 37 ARG CA CB sing N N 38 ARG CA HA sing N N 39 ARG C O doub N N 40 ARG C OXT sing N N 41 ARG CB CG sing N N 42 ARG CB HB2 sing N N 43 ARG CB HB3 sing N N 44 ARG CG CD sing N N 45 ARG CG HG2 sing N N 46 ARG CG HG3 sing N N 47 ARG CD NE sing N N 48 ARG CD HD2 sing N N 49 ARG CD HD3 sing N N 50 ARG NE CZ sing N N 51 ARG NE HE sing N N 52 ARG CZ NH1 sing N N 53 ARG CZ NH2 doub N N 54 ARG NH1 HH11 sing N N 55 ARG NH1 HH12 sing N N 56 ARG NH2 HH21 sing N N 57 ARG NH2 HH22 sing N N 58 ARG OXT HXT sing N N 59 ASN N CA sing N N 60 ASN N H sing N N 61 ASN N H2 sing N N 62 ASN CA C sing N N 63 ASN CA CB sing N N 64 ASN CA HA sing N N 65 ASN C O doub N N 66 ASN C OXT sing N N 67 ASN CB CG sing N N 68 ASN CB HB2 sing N N 69 ASN CB HB3 sing N N 70 ASN CG OD1 doub N N 71 ASN CG ND2 sing N N 72 ASN ND2 HD21 sing N N 73 ASN ND2 HD22 sing N N 74 ASN OXT HXT sing N N 75 ASP N CA sing N N 76 ASP N H sing N N 77 ASP N H2 sing N N 78 ASP CA C sing N N 79 ASP CA CB sing N N 80 ASP CA HA sing N N 81 ASP C O doub N N 82 ASP C OXT sing N N 83 ASP CB CG sing N N 84 ASP CB HB2 sing N N 85 ASP CB HB3 sing N N 86 ASP CG OD1 doub N N 87 ASP CG OD2 sing N N 88 ASP OD2 HD2 sing N N 89 ASP OXT HXT sing N N 90 CYS N CA sing N N 91 CYS N H sing N N 92 CYS N H2 sing N N 93 CYS CA C sing N N 94 CYS CA CB sing N N 95 CYS CA HA sing N N 96 CYS C O doub N N 97 CYS C OXT sing N N 98 CYS CB SG sing N N 99 CYS CB HB2 sing N N 100 CYS CB HB3 sing N N 101 CYS SG HG sing N N 102 CYS OXT HXT sing N N 103 GLN N CA sing N N 104 GLN N H sing N N 105 GLN N H2 sing N N 106 GLN CA C sing N N 107 GLN CA CB sing N N 108 GLN CA HA sing N N 109 GLN C O doub N N 110 GLN C OXT sing N N 111 GLN CB CG sing N N 112 GLN CB HB2 sing N N 113 GLN CB HB3 sing N N 114 GLN CG CD sing N N 115 GLN CG HG2 sing N N 116 GLN CG HG3 sing N N 117 GLN CD OE1 doub N N 118 GLN CD NE2 sing N N 119 GLN NE2 HE21 sing N N 120 GLN NE2 HE22 sing N N 121 GLN OXT HXT sing N N 122 GLU N CA sing N N 123 GLU N H sing N N 124 GLU N H2 sing N N 125 GLU CA C sing N N 126 GLU CA CB sing N N 127 GLU CA HA sing N N 128 GLU C O doub N N 129 GLU C OXT sing N N 130 GLU CB CG sing N N 131 GLU CB HB2 sing N N 132 GLU CB HB3 sing N N 133 GLU CG CD sing N N 134 GLU CG HG2 sing N N 135 GLU CG HG3 sing N N 136 GLU CD OE1 doub N N 137 GLU CD OE2 sing N N 138 GLU OE2 HE2 sing N N 139 GLU OXT HXT sing N N 140 GLY N CA sing N N 141 GLY N H sing N N 142 GLY N H2 sing N N 143 GLY CA C sing N N 144 GLY CA HA2 sing N N 145 GLY CA HA3 sing N N 146 GLY C O doub N N 147 GLY C OXT sing N N 148 GLY OXT HXT sing N N 149 HIS N CA sing N N 150 HIS N H sing N N 151 HIS N H2 sing N N 152 HIS CA C sing N N 153 HIS CA CB sing N N 154 HIS CA HA sing N N 155 HIS C O doub N N 156 HIS C OXT sing N N 157 HIS CB CG sing N N 158 HIS CB HB2 sing N N 159 HIS CB HB3 sing N N 160 HIS CG ND1 sing Y N 161 HIS CG CD2 doub Y N 162 HIS ND1 CE1 doub Y N 163 HIS ND1 HD1 sing N N 164 HIS CD2 NE2 sing Y N 165 HIS CD2 HD2 sing N N 166 HIS CE1 NE2 sing Y N 167 HIS CE1 HE1 sing N N 168 HIS NE2 HE2 sing N N 169 HIS OXT HXT sing N N 170 HOH O H1 sing N N 171 HOH O H2 sing N N 172 ILE N CA sing N N 173 ILE N H sing N N 174 ILE N H2 sing N N 175 ILE CA C sing N N 176 ILE CA CB sing N N 177 ILE CA HA sing N N 178 ILE C O doub N N 179 ILE C OXT sing N N 180 ILE CB CG1 sing N N 181 ILE CB CG2 sing N N 182 ILE CB HB sing N N 183 ILE CG1 CD1 sing N N 184 ILE CG1 HG12 sing N N 185 ILE CG1 HG13 sing N N 186 ILE CG2 HG21 sing N N 187 ILE CG2 HG22 sing N N 188 ILE CG2 HG23 sing N N 189 ILE CD1 HD11 sing N N 190 ILE CD1 HD12 sing N N 191 ILE CD1 HD13 sing N N 192 ILE OXT HXT sing N N 193 LA8 C2 N1 doub Y N 194 LA8 N1 C6 sing Y N 195 LA8 C2 N3 sing Y N 196 LA8 C2 H2 sing N N 197 LA8 N3 C4 doub Y N 198 LA8 C4 N9 sing Y N 199 LA8 C4 C5 sing Y N 200 LA8 C6 C5 doub Y N 201 LA8 C5 N7 sing Y N 202 LA8 C6 N6 sing N N 203 LA8 N6 HN6 sing N N 204 LA8 N6 HN6A sing N N 205 LA8 C8 N7 doub Y N 206 LA8 N9 C8 sing Y N 207 LA8 C8 H8 sing N N 208 LA8 "C1'" N9 sing N N 209 LA8 O1A PA doub N N 210 LA8 PA "O5'" sing N N 211 LA8 PA O3A sing N N 212 LA8 PA O2A sing N N 213 LA8 O2B PB doub N N 214 LA8 O1B PB sing N N 215 LA8 PB O3A sing N N 216 LA8 PB O3B sing N N 217 LA8 "C3'" "C1'" sing N N 218 LA8 "O4'" "C1'" sing N N 219 LA8 "C1'" "H1'" sing N N 220 LA8 O1B HO1B sing N N 221 LA8 "O2'" "C2'" sing N N 222 LA8 "C2'" "C4'" sing N N 223 LA8 "C2'" "C3'" sing N N 224 LA8 "C2'" "H2'" sing N N 225 LA8 "O2'" "HO2'" sing N N 226 LA8 O2A HO2A sing N N 227 LA8 "C3'" "O3'" sing N N 228 LA8 "C3'" "H3'" sing N N 229 LA8 "O3'" "HO3'" sing N N 230 LA8 O3B HO3B sing N N 231 LA8 "C5'" "C4'" sing N N 232 LA8 "C4'" "O4'" sing N N 233 LA8 "C4'" "H4'" sing N N 234 LA8 "C5'" "O5'" sing N N 235 LA8 "C5'" "H5'" sing N N 236 LA8 "C5'" "H5'A" sing N N 237 LEU N CA sing N N 238 LEU N H sing N N 239 LEU N H2 sing N N 240 LEU CA C sing N N 241 LEU CA CB sing N N 242 LEU CA HA sing N N 243 LEU C O doub N N 244 LEU C OXT sing N N 245 LEU CB CG sing N N 246 LEU CB HB2 sing N N 247 LEU CB HB3 sing N N 248 LEU CG CD1 sing N N 249 LEU CG CD2 sing N N 250 LEU CG HG sing N N 251 LEU CD1 HD11 sing N N 252 LEU CD1 HD12 sing N N 253 LEU CD1 HD13 sing N N 254 LEU CD2 HD21 sing N N 255 LEU CD2 HD22 sing N N 256 LEU CD2 HD23 sing N N 257 LEU OXT HXT sing N N 258 LYS N CA sing N N 259 LYS N H sing N N 260 LYS N H2 sing N N 261 LYS CA C sing N N 262 LYS CA CB sing N N 263 LYS CA HA sing N N 264 LYS C O doub N N 265 LYS C OXT sing N N 266 LYS CB CG sing N N 267 LYS CB HB2 sing N N 268 LYS CB HB3 sing N N 269 LYS CG CD sing N N 270 LYS CG HG2 sing N N 271 LYS CG HG3 sing N N 272 LYS CD CE sing N N 273 LYS CD HD2 sing N N 274 LYS CD HD3 sing N N 275 LYS CE NZ sing N N 276 LYS CE HE2 sing N N 277 LYS CE HE3 sing N N 278 LYS NZ HZ1 sing N N 279 LYS NZ HZ2 sing N N 280 LYS NZ HZ3 sing N N 281 LYS OXT HXT sing N N 282 MET N CA sing N N 283 MET N H sing N N 284 MET N H2 sing N N 285 MET CA C sing N N 286 MET CA CB sing N N 287 MET CA HA sing N N 288 MET C O doub N N 289 MET C OXT sing N N 290 MET CB CG sing N N 291 MET CB HB2 sing N N 292 MET CB HB3 sing N N 293 MET CG SD sing N N 294 MET CG HG2 sing N N 295 MET CG HG3 sing N N 296 MET SD CE sing N N 297 MET CE HE1 sing N N 298 MET CE HE2 sing N N 299 MET CE HE3 sing N N 300 MET OXT HXT sing N N 301 PHE N CA sing N N 302 PHE N H sing N N 303 PHE N H2 sing N N 304 PHE CA C sing N N 305 PHE CA CB sing N N 306 PHE CA HA sing N N 307 PHE C O doub N N 308 PHE C OXT sing N N 309 PHE CB CG sing N N 310 PHE CB HB2 sing N N 311 PHE CB HB3 sing N N 312 PHE CG CD1 doub Y N 313 PHE CG CD2 sing Y N 314 PHE CD1 CE1 sing Y N 315 PHE CD1 HD1 sing N N 316 PHE CD2 CE2 doub Y N 317 PHE CD2 HD2 sing N N 318 PHE CE1 CZ doub Y N 319 PHE CE1 HE1 sing N N 320 PHE CE2 CZ sing Y N 321 PHE CE2 HE2 sing N N 322 PHE CZ HZ sing N N 323 PHE OXT HXT sing N N 324 PRO N CA sing N N 325 PRO N CD sing N N 326 PRO N H sing N N 327 PRO CA C sing N N 328 PRO CA CB sing N N 329 PRO CA HA sing N N 330 PRO C O doub N N 331 PRO C OXT sing N N 332 PRO CB CG sing N N 333 PRO CB HB2 sing N N 334 PRO CB HB3 sing N N 335 PRO CG CD sing N N 336 PRO CG HG2 sing N N 337 PRO CG HG3 sing N N 338 PRO CD HD2 sing N N 339 PRO CD HD3 sing N N 340 PRO OXT HXT sing N N 341 SER N CA sing N N 342 SER N H sing N N 343 SER N H2 sing N N 344 SER CA C sing N N 345 SER CA CB sing N N 346 SER CA HA sing N N 347 SER C O doub N N 348 SER C OXT sing N N 349 SER CB OG sing N N 350 SER CB HB2 sing N N 351 SER CB HB3 sing N N 352 SER OG HG sing N N 353 SER OXT HXT sing N N 354 THR N CA sing N N 355 THR N H sing N N 356 THR N H2 sing N N 357 THR CA C sing N N 358 THR CA CB sing N N 359 THR CA HA sing N N 360 THR C O doub N N 361 THR C OXT sing N N 362 THR CB OG1 sing N N 363 THR CB CG2 sing N N 364 THR CB HB sing N N 365 THR OG1 HG1 sing N N 366 THR CG2 HG21 sing N N 367 THR CG2 HG22 sing N N 368 THR CG2 HG23 sing N N 369 THR OXT HXT sing N N 370 TRP N CA sing N N 371 TRP N H sing N N 372 TRP N H2 sing N N 373 TRP CA C sing N N 374 TRP CA CB sing N N 375 TRP CA HA sing N N 376 TRP C O doub N N 377 TRP C OXT sing N N 378 TRP CB CG sing N N 379 TRP CB HB2 sing N N 380 TRP CB HB3 sing N N 381 TRP CG CD1 doub Y N 382 TRP CG CD2 sing Y N 383 TRP CD1 NE1 sing Y N 384 TRP CD1 HD1 sing N N 385 TRP CD2 CE2 doub Y N 386 TRP CD2 CE3 sing Y N 387 TRP NE1 CE2 sing Y N 388 TRP NE1 HE1 sing N N 389 TRP CE2 CZ2 sing Y N 390 TRP CE3 CZ3 doub Y N 391 TRP CE3 HE3 sing N N 392 TRP CZ2 CH2 doub Y N 393 TRP CZ2 HZ2 sing N N 394 TRP CZ3 CH2 sing Y N 395 TRP CZ3 HZ3 sing N N 396 TRP CH2 HH2 sing N N 397 TRP OXT HXT sing N N 398 TYR N CA sing N N 399 TYR N H sing N N 400 TYR N H2 sing N N 401 TYR CA C sing N N 402 TYR CA CB sing N N 403 TYR CA HA sing N N 404 TYR C O doub N N 405 TYR C OXT sing N N 406 TYR CB CG sing N N 407 TYR CB HB2 sing N N 408 TYR CB HB3 sing N N 409 TYR CG CD1 doub Y N 410 TYR CG CD2 sing Y N 411 TYR CD1 CE1 sing Y N 412 TYR CD1 HD1 sing N N 413 TYR CD2 CE2 doub Y N 414 TYR CD2 HD2 sing N N 415 TYR CE1 CZ doub Y N 416 TYR CE1 HE1 sing N N 417 TYR CE2 CZ sing Y N 418 TYR CE2 HE2 sing N N 419 TYR CZ OH sing N N 420 TYR OH HH sing N N 421 TYR OXT HXT sing N N 422 VAL N CA sing N N 423 VAL N H sing N N 424 VAL N H2 sing N N 425 VAL CA C sing N N 426 VAL CA CB sing N N 427 VAL CA HA sing N N 428 VAL C O doub N N 429 VAL C OXT sing N N 430 VAL CB CG1 sing N N 431 VAL CB CG2 sing N N 432 VAL CB HB sing N N 433 VAL CG1 HG11 sing N N 434 VAL CG1 HG12 sing N N 435 VAL CG1 HG13 sing N N 436 VAL CG2 HG21 sing N N 437 VAL CG2 HG22 sing N N 438 VAL CG2 HG23 sing N N 439 VAL OXT HXT sing N N 440 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'CHLORIDE ION' CL 4 "L-ADENOSINE-5'-DIPHOSPHATE" LA8 5 'TETRAFLUOROALUMINATE ION' ALF 6 '3-PHOSPHOGLYCERIC ACID' 3PG 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2WZC _pdbx_initial_refinement_model.details 'PDB ENTRY 2WZC' #