data_2YBJ # _entry.id 2YBJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YBJ pdb_00002ybj 10.2210/pdb2ybj/pdb PDBE EBI-47578 ? ? WWPDB D_1290047578 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-20 2 'Structure model' 1 1 2023-12-20 3 'Structure model' 1 2 2024-10-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' Other 5 2 'Structure model' 'Refinement description' 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_database_status 5 2 'Structure model' pdbx_initial_refinement_model 6 2 'Structure model' struct_site 7 3 'Structure model' pdbx_entry_details 8 3 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_sf' 4 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YBJ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-03-08 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1W6Z unspecified 'HIGH ENERGY TATRAGONAL LYSOZYME X-RAY STRUCTURE' PDB 1KXX unspecified 'ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS' PDB 4LYO unspecified 'CROSS-LINKED CHICKEN LYSOZYME CRYSTAL IN NEAT ACETONITRILE, THEN BACK-SOAKED IN WATER' PDB 3LYO unspecified 'CROSS-LINKED CHICKEN LYSOZYME CRYSTAL IN 95% ACETONITRILE-WATER' PDB 1KIP unspecified 'FV MUTANT Y(B 32)A (VH DOMAIN) OF MOUSE MONOCLONAL ANTIBODY D1.3 COMPLEXED WITH HEN EGG WHITE LYSOZYME' PDB 1T6V unspecified 'CRYSTAL STRUCTURE ANALYSIS OF THE NURSE SHARK NEW ANTIGENRECEPTOR (NAR) VARIABLE DOMAIN IN COMPLEX WITH LYSOZYME' PDB 1VDS unspecified 'THE CRYSTAL STRUCTURE OF THE TETRAGONAL FORM OF HEN EGGWHITE LYSOZYME AT 1.6 ANGSTROMS RESOLUTION IN SPACE' PDB 1IC7 unspecified 'CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD32A99A)- HENLYSOZYME COMPLEX' PDB 1LZT unspecified 'LYSOZYME , TRICLINIC CRYSTAL FORM' PDB 1KIR unspecified 'FV MUTANT Y(A 50)S (VL DOMAIN) OF MOUSE MONOCLONAL ANTIBODY D1.3 COMPLEXED WITH HEN EGG WHITE LYSOZYME' PDB 2XBR unspecified 'RAMAN CRYSTALLOGRAPHY OF HEN WHITE EGG LYSOZYME - LOW X-RAY DOSE (0.2 MGY)' PDB 1LYS unspecified LYSOZYME PDB 1BWJ unspecified 'THE 1.8 A STRUCTURE OF MICROGRAVITY GROWN TETRAGONAL HEN EGG WHITE LYSOZYME' PDB 132L unspecified LYSOZYME PDB 1E8L unspecified 'NMR SOLUTION STRUCTURE OF HEN LYSOZYME' PDB 1YIL unspecified 'STRUCTURE OF HEN EGG WHITE LYSOZYME SOAKED WITH CU2- XYLYLBICYCLAM' PDB 1HEO unspecified 'LYSOZYME MUTANT WITH ILE 55 REPLACED BY VAL (I55V)' PDB 1SFG unspecified 'BINDING OF HEXA-N-ACETYLCHITOHEXAOSE: A POWDER DIFFRACTIONSTUDY' PDB 1KXW unspecified 'ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS' PDB 2X0A unspecified 'MPD-LYSOZYME STRUCTURE AT 55.5 KEV USING A TRIXXEL CSI-ASI BASED DIGITAL IMAGER AND THE NEW ESRF U22 UNDULATOR SOURCE AT ID15' PDB 2C8O unspecified 'LYSOZYME (1SEC) AND UV LASR EXCITED FLUORESCENCE' PDB 1YL1 unspecified 'EFFECT OF ALCOHOLS ON PROTEIN HYDRATION' PDB 1SF4 unspecified ;BINDING OF N,N'-DIACETYLCHITOBIOSE TO HEW LYSOZYME: APOWDER DIFFRACTION STUDY ; PDB 1G7L unspecified 'CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME (HEL) COMPLEXEDWITH THE MUTANT ANTI-HEL MONOCLONAL ANTIBODY D1 .3 (VLW92S)' PDB 1IOR unspecified 'STABILIZATION OF HEN EGG WHITE LYSOZYME BY A CAVITY- FILLINGMUTATION' PDB 1H87 unspecified 'GADOLINIUM DERIVATIVE OF TETRAGONAL HEN EGG-WHITE LYSOZYME AT 1.7 A RESOLUTION' PDB 1LJG unspecified 'CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCEOF 5% GLYCEROL' PDB 3LYT unspecified 'LYSOZYME (100 KELVIN)' PDB 1DPX unspecified 'STRUCTURE OF HEN EGG-WHITE LYSOZYME' PDB 1IOT unspecified 'STABILIZATION OF HEN EGG WHITE LYSOZYME BY A CAVITY- FILLINGMUTATION' PDB 1V7S unspecified 'TRICLINIC HEN LYSOZYME CRYSTALLIZED AT 313K FROM A D2OSOLUTION' PDB 1JA6 unspecified 'BINDING OF N-ACETYLGLUCOSAMINE TO CHICKEN EGG LYSOZYME : APOWDER DIFFRACTION STUDY' PDB 1JIS unspecified 'CRYSTAL STRUCTURE OF TETRAGONAL LYSOZYME GROWN AT PH 4 .6' PDB 1IR8 unspecified 'IM MUTANT OF LYSOZYME' PDB 2W1M unspecified 'THE INTERDEPENDENCE OF WAVELENGTH, REDUNDANCY AND DOSE IN SULFUR SAD EXPERIMENTS: 2.070 A WAVELENGTH WITH 2THETA 30 DEGREES DATA' PDB 1UIC unspecified 'ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS' PDB 1XGQ unspecified 'STRUCTURE FOR ANTIBODY HYHEL-63 Y33V MUTANT COMPLEXED WITHHEN EGG LYSOZYME' PDB 1YKZ unspecified 'EFFECT OF ALCOHOLS ON PROTEIN HYDRATION' PDB 1UIE unspecified 'ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS' PDB 2WAR unspecified 'HEN EGG WHITE LYSOZYME E35Q CHITOPENTAOSE COMPLEX' PDB 1LJI unspecified 'CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE10% SORBITOL' PDB 8LYZ unspecified 'LYSOZYME IODINE-INACTIVATED' PDB 1LJ3 unspecified 'CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN AT PH 4 .6' PDB 1DPW unspecified 'STRUCTURE OF HEN EGG-WHITE LYSOZYME IN COMPLEX WITH MPD' PDB 2LYO unspecified 'CROSS-LINKED CHICKEN LYSOZYME CRYSTAL IN 90% ACETONITRILE-WATER' PDB 2IFF unspecified 'IGG1 FAB FRAGMENT (HYHEL-5) COMPLEXED WITH LYSOZYME MUTANT WITH ARG 68 REPLACED BY LYS (R68K)' PDB 1BWI unspecified 'THE 1.8 A STRUCTURE OF MICROBATCH OIL DROP GROWN TETRAGONAL HEN EGG WHITE LYSOZYME' PDB 1G7H unspecified 'CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME (HEL) COMPLEXEDWITH THE MUTANT ANTI-HEL MONOCLONAL ANTIBODY D1 .3(VLW92A)' PDB 1JJ0 unspecified 'CRYSTAL STRUCTURE OF TETRAGONAL LYSOZYME GROWN IN PRESENCEOF 30% SUCROSE' PDB 1LKS unspecified 'HEN EGG WHITE LYSOZYME NITRATE' PDB 1RFP unspecified 'ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS' PDB 5LYT unspecified 'LYSOZYME (100 KELVIN)' PDB 1JIY unspecified 'CRYSTAL STRUCTURE OF TETRAGONAL LYSOZYME GROWN IN PRESENCE20% SORBITOL' PDB 1SFB unspecified 'BINDING OF PENTA-N-ACETYLCHITOPENTAOSE TO HEW LYSOZYME : APOWDER DIFFRACTION STUDY' PDB 1XEI unspecified 'THE CRYSTAL STRUCTURES OF LYSOZYME AT VERY LOW LEVELS OF HYDRATION' PDB 1IR7 unspecified 'IM MUTANT OF LYSOZYME' PDB 1IEE unspecified 'STRUCTURE OF TETRAGONAL HEN EGG WHITE LYSOZYME AT 0. 94 AFROM CRYSTALS GROWN BY THE COUNTER-DIFFUSION METHOD' PDB 1XEK unspecified 'THE CRYSTAL STRUCTURES OF LYSOZYME AT VERY LOW LEVELS OF HYDRATION' PDB 1HEL unspecified 'HEN EGG-WHITE LYSOZYME WILD TYPE' PDB 1AT6 unspecified 'HEN EGG WHITE LYSOZYME WITH A ISOASPARTATE RESIDUE' PDB 1LJF unspecified 'CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCEOF 10% SUCROSE' PDB 1MLC unspecified 'MONOCLONAL ANTIBODY FAB D44.1 RAISED AGAINST CHICKEN EGG-WHITE LYSOZYME COMPLEXED WITH LYSOZYME' PDB 2B5Z unspecified 'HEN LYSOZYME CHEMICALLY GLYCOSYLATED' PDB 1F10 unspecified 'CRYSTAL STRUCTURE OF ORTHORHOMBIC LYSOZYME GROWN AT PH 6.5 AT 88% RELATIVE HUMIDITY' PDB 193L unspecified 'THE 1.33 A STRUCTURE OF TETRAGONAL HEN EGG WHITE LYSOZYME' PDB 1LSZ unspecified 'LYSOZYME MUTANT WITH ASP 52 REPLACED BY SER (D52S) COMPLEXED WITH GLCNAC4 (TETRA-N-ACETYL CHITOTETRAOSE)' PDB 1LJK unspecified 'CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCEOF 15% TREHALOSE' PDB 6LYT unspecified 'LYSOZYME (298 KELVIN)' PDB 1SQ2 unspecified 'CRYSTAL STRUCTURE ANALYSIS OF THE NURSE SHARK NEW ANTIGENRECEPTOR (NAR) VARIABLE DOMAIN IN COMPLEX WITH LYXOZYME' PDB 1VDQ unspecified 'THE CRYSTAL STRUCTURE OF THE ORTHORHOMBIC FORM OF HEN EGGWHITE LYSOZYME AT 1.5 ANGSTROMS RESOLUTION' PDB 1ZMY unspecified 'CABBCII-10 VHH FRAMEWORK WITH CDR LOOPS OF CABLYS3 GRAFTEDON IT AND IN COMPLEX WITH HEN EGG WHITE LYSOZYME' PDB 2D91 unspecified 'STRUCTURE OF HYPER-VIL-LYSOZYME' PDB 1LJE unspecified 'CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCEOF 10% SUCROSE' PDB 2XTH unspecified 'K2PTBR6 BINDING TO LYSOZYME' PDB 1LZE unspecified 'LYSOZYME MUTANT WITH TRP 62 REPLACED BY TYR (W62Y) CO-CRYSTALLIZED WITH TRI-N-ACETYL-CHITOTRIOSE (PH 4. 7)' PDB 1B2K unspecified 'STRUCTURAL EFFECTS OF MONOVALENT ANIONS ON POLYMORPHIC LYSOZYME CRYSTALS' PDB 1AKI unspecified 'THE STRUCTURE OF THE ORTHORHOMBIC FORM OF HEN EGG- WHITE LYSOZYME AT 1.5 ANGSTROMS RESOLUTION' PDB 1HEN unspecified 'LYSOZYME MUTANT WITH ILE 55 REPLACED BY VAL AND SER 91 REPLACED BY THR (I55V,S91T)' PDB 1UIA unspecified 'ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS' PDB 1YIK unspecified 'STRUCTURE OF HEN EGG WHITE LYSOZYME SOAKED WITH CU- CYCLAM' PDB 1XFP unspecified 'CRYSTAL STRUCTURE OF THE CDR2 GERMLINE REVERSION MUTANT OFCAB-LYS3 IN COMPLEX WITH HEN EGG WHITE LYSOZYME' PDB 2D6B unspecified 'NOVEL BROMATE SPECIES TRAPPED WITHIN A PROTEIN CRYSTAL' PDB 1LPI unspecified 'HEW LYSOZYME: TRP...NA CATION-PI INTERACTION' PDB 1NDG unspecified 'CRYSTAL STRUCTURE OF FAB FRAGMENT OF ANTIBODY HYHEL- 8COMPLEXED WITH ITS ANTIGEN LYSOZYME' PDB 1FLW unspecified 'HEN EGG WHITE LYSOZYME MUTANT WITH ALANINE SUBSTITUTED FORGLYCINE' PDB 1LSD unspecified 'LYSOZYME (280 K)' PDB 2BLX unspecified ;HEWL BEFORE A HIGH DOSE X-RAY "BURN" ; PDB 6LYZ unspecified LYSOZYME PDB 1LSG unspecified ;MOL_ID: 1; MOLECULE: LYSOZYME MODIFIED WITH HUMAN FIBRINOGEN GAMMA; CHAIN: NULL; ENGINEERED; THE 14- RESIDUE C-TERMINUS (RESIDUES 398 - 411) OF THE HUMAN FIBRINOGEN GAMMA CHAIN FUSED TO THE C-TERMINUS OF CHICKEN EGG WHITE LYSOZYME; MUTATION: N-TERM MET ; PDB 1NBZ unspecified 'CRYSTAL STRUCTURE OF HYHEL-63 COMPLEXED WITH HEL MUTANT K96A' PDB 4LYT unspecified 'LYSOZYME (298 KELVIN)' PDB 1VED unspecified 'THE CRYSTAL STRUCTURE OF THE ORTHORHOMBIC FORM OF HEN EGGWHITE LYSOZYME AT 1.9 ANGSTROMS RESOLUTION IN SPACE' PDB 3HFM unspecified 'IGG1 FAB FRAGMENT (HYHEL-10) AND LYSOZYME COMPLEX' PDB 1JIT unspecified 'CRYSTAL STRUCTURE OF TETRAGONAL LYSOZYME GROWN IN PRESENCE30% TREHALOSE' PDB 1LZN unspecified 'NEUTRON STRUCTURE OF HEN EGG-WHITE LYSOZYME' PDB 1LYZ unspecified LYSOZYME PDB 1WTN unspecified 'THE STRUCTURE OF HEW LYSOZYME ORTHORHOMBIC CRYSTAL GROWTHUNDER A HIGH MAGNETIC FIELD' PDB 1JA2 unspecified 'BINDING OF N-ACETYLGLUCOSAMINE TO CHICKEN EGG LYSOZYME : APOWDER DIFFRACTION STUDY' PDB 1UUZ unspecified 'IVY:A NEW FAMILY OF PROTEIN' PDB 2XBS unspecified 'RAMAN CRYSTALLOGRAPHY OF HEN WHITE EGG LYSOZYME - HIGH X-RAY DOSE (16 MGY)' PDB 2D4I unspecified 'MONOCLINIC HEN EGG-WHITE LYSOZYME CRYSTALLIZED AT PH4. 5FORM HEAVY WATER SOLUTION' PDB 2FBB unspecified 'CRYSTAL STRUCTURE ANALYSIS OF HEXAGONAL LYSOZYME' PDB 2LYM unspecified 'LYSOZYME (1 ATMOSPHERE, 1.4 M NACL)' PDB 1FDL unspecified 'IGG1 FAB FRAGMENT (ANTI-LYSOZYME ANTIBODY D1.3, KAPPA ) - LYSOZYME COMPLEX' PDB 1GXX unspecified 'SOLUTION STRUCTURE OF LYSOZYME AT LOW AND HIGH PRESSURE' PDB 1LZ9 unspecified 'ANOMALOUS SIGNAL OF SOLVENT BROMINES USED FOR PHASING OF LYSOZYME' PDB 1LSE unspecified 'LYSOZYME (295 K)' PDB 1LZH unspecified 'LYSOZYME (MONOCLINIC)' PDB 1LSM unspecified 'LYSOZYME MUTANT WITH ILE 55 REPLACED BY LEU, SER 91 REPLACED BY THR, AND ASP 101 REPLACED BY SER (I55L ,S91T,D101S)' PDB 3LYM unspecified 'LYSOZYME (1000 ATMOSPHERES, 1.4 M NACL)' PDB 1JJ3 unspecified 'CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN AT PH 4 .6' PDB 7LYZ unspecified 'LYSOZYME TRICLINIC CRYSTAL FORM' PDB 1YKY unspecified 'EFFECT OF ALCOHOLS ON PROTEIN HYDRATION' PDB 1T3P unspecified 'HALF-SANDWICH ARENE RUTHENIUM(II)-ENZYME COMPLEX' PDB 1HEQ unspecified 'LYSOZYME MUTANT WITH THR 40 REPLACED BY SER AND SER 91 REPLACED BY THR (T40S,S91T)' PDB 1KIQ unspecified 'FV MUTANT Y(B 101)F (VH DOMAIN) OF MOUSE MONOCLONAL ANTIBODY D1.3 COMPLEXED WITH HEN EGG WHITE LYSOZYME' PDB 2LZH unspecified 'LYSOZYME (ORTHORHOMBIC)' PDB 1UIH unspecified 'ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS' PDB 1KXY unspecified 'ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS' PDB 2W1L unspecified 'THE INTERDEPENDENCE OF WAVELENGTH, REDUNDANCY AND DOSE IN SULFUR SAD EXPERIMENTS: 0.979 A WAVELENGTH 991 IMAGES DATA' PDB 1B0D unspecified 'STRUCTURAL EFFECTS OF MONOVALENT ANIONS ON POLYMORPHIC LYSOZYME CRYSTALS' PDB 1G7J unspecified 'CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME (HEL) COMPLEXEDWITH THE MUTANT ANTI-HEL MONOCLONAL ANTIBODY D1 .3 (VLW92H)' PDB 2BLY unspecified ;HEWL AFTER A HIGH DOSE X-RAY "BURN" ; PDB 1BHZ unspecified 'LOW TEMPERATURE MIDDLE RESOLUTION STRUCTURE OF HEN EGG WHITE LYSOZYME FROM MASC DATA' PDB 1HER unspecified 'LYSOZYME MUTANT WITH THR 40 REPLACED BY SER (T40S)' PDB 1WTM unspecified ;X-RAY STRUCTURE OF HEW LYSOZYME ORTHORHOMBIC CRYSTAL FORMEDIN THE EARTH'S MAGNETIC FIELD ; PDB 1IOQ unspecified 'STABILIZATION OF HEN EGG WHITE LYSOZYME BY A CAVITY- FILLINGMUTATION' PDB 1NBY unspecified 'CRYSTAL STRUCTURE OF HYHEL-63 COMPLEXED WITH HEL MUTANT K96A' PDB 1HEP unspecified 'LYSOZYME MUTANT WITH THR 40 REPLACED BY SER, ILE 55 REPLACED BY VAL, AND SER 91 REPLACED BY THR (T40S ,I55V,S91T)' PDB 1JTT unspecified 'DEGENERATE INTERFACES IN ANTIGEN-ANTIBODY COMPLEXES' PDB 1QIO unspecified 'SPECIFIC CHEMICAL AND STRUCTURAL DAMAGE CAUSED BY INTENSE SYNCHROTRON RADIATION TO HEN EGG WHITE LYSOZYME' PDB 1LZA unspecified LYSOZYME PDB 1XGP unspecified 'STRUCTURE FOR ANTIBODY HYHEL-63 Y33A MUTANT COMPLEXED WITHHEN EGG LYSOZYME' PDB 1PS5 unspecified 'STRUCTURE OF THE MONOCLINIC C2 FORM OF HEN EGG- WHITELYSOZYME AT 2.0 ANGSTROMS RESOLUTION' PDB 1GWD unspecified 'TRI-IODIDE DERIVATIVE OF HEN EGG-WHITE LYSOZYME' PDB 1V7T unspecified 'TRICLINIC LYSOZYME WITH LOW SOLVENT CONTENT OBTAINED BYPHASE TRANSITION' PDB 1JPO unspecified 'LOW TEMPERATURE ORTHORHOMBIC LYSOZYME' PDB 1H6M unspecified 'COVALENT GLYCOSYL-ENZYME INTERMEDIATE OF HEN EGG WHITE LYSOZYME' PDB 1DQJ unspecified 'CRYSTAL STRUCTURE OF THE ANTI-LYSOZYME ANTIBODY HYHEL- 63 COMPLEXED WITH HEN EGG WHITE LYSOZYME' PDB 2A7D unspecified 'ON THE ROUTINE USE OF SOFT X-RAYS IN MACROMOLECULARCRYSTALLOGRAPHY, PART III- THE OPTIMAL DATA COLLECTIONWAVELENGTH' PDB 1J1P unspecified 'CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT LS91A COMPLEXEDWITH HEN EGG WHITE LYSOZYME' PDB 2C8P unspecified 'LYSOZYME (60SEC) AND UV LASER EXCITED FLUORESCENCE' PDB 1LJJ unspecified 'CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCEOF 10% TREHALOSE' PDB 1Z55 unspecified 'EFFECT OF ALCOHOLS ON PROTEIN HYDRATION' PDB 1LSB unspecified 'LYSOZYME (180 K)' PDB 1F0W unspecified 'CRYSTAL STRUCTURE OF ORTHORHOMBIC LYSOZYME GROWN AT PH 6.5' PDB 2W1X unspecified 'THE INTERDEPENDENCE OF WAVELENGTH, REDUNDANCY AND DOSE IN SULFUR SAD EXPERIMENTS: 1.284 A WAVELENGTH 360 IMAGES DATA' PDB 1FLQ unspecified 'HEN EGG WHITE LYSOZYME MUTANT WITH ALANINE SUBSTITUTED FORGLYCINE' PDB 1LZG unspecified 'LYSOZYME MUTANT WITH TRP 62 REPLACED BY PHE (W62F) CO-CRYSTALLIZED WITH TRI-N-ACETYL-CHITOTRIOSE (PH 4. 7)' PDB 1LZC unspecified 'LYSOZYME CO-CRYSTALLIZED WITH TETRA-N-ACETYL- CHITOTETRAOSE (PH 4.7)' PDB 1JJ1 unspecified 'CRYSTAL STRUCTURE OF ORTHORHOMBIC LYSOZYME GROWN AT PH 4.6IN PRESENCE OF 5% SORBITOL' PDB 1RCM unspecified 'LYSOZYME (PARTIALLY REDUCED, CARBOXYMETHYLATED (6,127-RCM ))' PDB 1UID unspecified 'ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS' PDB 1YQV unspecified 'THE CRYSTAL STRUCTURE OF THE ANTIBODY FAB HYHEL5 COMPLEXWITH LYSOZYME AT 1.7A RESOLUTION' PDB 1HSX unspecified 'LYSOZYME GROWN AT BASIC PH AND ITS LOW HUMIDITY VARIANT' PDB 1BGI unspecified 'ORTHORHOMBIC LYSOZYME CRYSTALLIZED AT HIGH TEMPERATURE ( 310K)' PDB 1LCN unspecified 'MONOCLINIC HEN EGG WHITE LYSOZYME, THIOCYANATE COMPLEX' PDB 1LZD unspecified 'LYSOZYME MUTANT WITH TRP 62 REPLACED BY TYR (W62Y)' PDB 1HEW unspecified 'LYSOZYME COMPLEXED WITH THE INHIBITOR TRI-N- ACETYLCHITOTRIOSE' PDB 2CDS unspecified LYSOZYME PDB 2VB1 unspecified 'HEWL AT 0.65 ANGSTROM RESOLUTION' PDB 2AUB unspecified 'LYSOZYME STRUCTURE DERIVED FROM THIN-FILM-BASED CRYSTALS' PDB 1HF4 unspecified 'STRUCTURAL EFFECTS OF MONOVALENT ANIONS ON POLYMORPHIC LYSOZYME CRYSTALS' PDB 1UIB unspecified 'ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS' PDB 1IR9 unspecified 'IM MUTANT OF LYSOZYME' PDB 2CGI unspecified 'SIRAS STRUCTURE OF TETRAGONAL LYSOSYME USING DERIVATIVE DATA COLLECTED AT THE HIGH ENERGY REMOTE HOLMIUM KEDGE' PDB 1J1X unspecified 'CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT LS93A COMPLEXEDWITH HEN EGG WHITE LYSOZYME' PDB 1IOS unspecified 'STABILIZATION OF HEN EGG WHITE LYSOZYME BY A CAVITY- FILLINGMUTATION' PDB 1RJC unspecified 'CRYSTAL STRUCTURE OF THE CAMELID SINGLE DOMAIN ANTIBODY CAB-LYS2 IN COMPLEX WITH HEN EGG WHITE LYSOZYME' PDB 1UC0 unspecified ;CRYSTAL STRUCTURE OF WILD-TYPE HEN-EGG WHITE LYSOZYMESINGLY LABELED WITH 2',3'-EPOXYPROPYL BETA- GLYCOSIDE OF N-ACETYLLACTOSAMINE ; PDB 1AZF unspecified 'CHICKEN EGG WHITE LYSOZYME CRYSTAL GROWN IN BROMIDE SOLUTION' PDB 1LJH unspecified 'CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCEOF 5% GLYCEROL' PDB 1IC4 unspecified 'CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD32A)-HEN LYSOZYMECOMPLEX' PDB 4LYZ unspecified LYSOZYME PDB 1GPQ unspecified 'STRUCTURE OF IVY COMPLEXED WITH ITS TARGET, HEWL' PDB 2A6U unspecified 'PH EVOLUTION OF TETRAGONAL HEWL AT 4 DEGREES CELCIUS.' PDB 2D4K unspecified 'MONOCLINIC HEN EGG-WHITE LYSOZYME CRYSTALLIZED AT 313K' PDB 1XEJ unspecified 'THE CRYSTAL STRUCTURES OF LYSOZYME AT VERY LOW LEVELS OF HYDRATION' PDB 1JA7 unspecified 'BINDING OF N-ACETYLGLUCOSAMINE TO CHICKEN EGG LYSOZYME : APOWDER DIFFRACTION STUDY' PDB 1MEL unspecified 'CRYSTAL STRUCTURE OF A CAMEL SINGLE-DOMAIN VH ANTIBODY FRAGMENT IN COMPLEX WITH LYSOZYME' PDB 1RI8 unspecified 'CRYSTAL STRUCTURE OF THE CAMELID SINGLE DOMAIN ANTIBODY1D2L19 IN COMPLEX WITH HEN EGG WHITE LYSOZYME' PDB 1UIG unspecified 'ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS' PDB 1BVX unspecified 'THE 1.8 A STRUCTURE OF GEL GROWN TETRAGONAL HEN EGG WHITE LYSOZYME' PDB 1QTK unspecified 'CRYSTAL STRUCTURE OF HEW LYSOZYME UNDER PRESSURE OF KRYPTON (55 BAR)' PDB 1C10 unspecified 'CRYSTAL STRUCTURE OF HEW LYSOZYME UNDER PRESSURE OF XENON (8 BAR)' PDB 1LKR unspecified 'MONOCLINIC HEN EGG WHITE LYSOZYME IODIDE' PDB 1LYO unspecified 'CROSS-LINKED LYSOZYME CRYSTAL IN NEAT WATER' PDB 2XJW unspecified 'LYSOZYME-CO RELEASING MOLECULE ADDUCT' PDB 1HSW unspecified 'LYSOZYME (MUCOPEPTIDE N-ACETYLMURAMYL HYDROLASE)' PDB 1N4F unspecified 'PARA-ARSANILATE DERIVATIVE OF HEN EGG-WHITE LYSOZYME' PDB 1JTO unspecified 'DEGENERATE INTERFACES IN ANTIGEN-ANTIBODY COMPLEXES' PDB 2W1Y unspecified 'THE INTERDEPENDENCE OF WAVELENGTH, REDUNDANCY AND DOSE IN SULFUR SAD EXPERIMENTS: 1.540 A WAVELENGTH 180 IMAGES DATA' PDB 1G7M unspecified 'CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME (HEL) COMPLEXEDWITH THE MUTANT ANTI-HEL MONOCLONAL ANTIBODY D1 .3 (VLW92V)' PDB 1SF7 unspecified 'BINDING OF TETRA-N-ACETYLCHITOTETRAOSE TO HEW LYSOZYME : APOWDER DIFFRACTION STUDY' PDB 1LSF unspecified 'LYSOZYME (95 K)' PDB 1FN5 unspecified 'HEN EGG WHITE LYSOZYME MUTANT WITH ALANINE SUBSTITUTED FORGLYCINE' PDB 2D4J unspecified 'TRANSFORMED MONOCLINIC CRYSTAL OF HEN EGG-WHITE LYSOZYMEFROM A HEAVY WATER SOLUTION' PDB 5LYZ unspecified LYSOZYME PDB 3LZT unspecified 'REFINEMENT OF TRICLINIC LYSOZYME AT ATOMIC RESOLUTION' PDB 1C08 unspecified 'CRYSTAL STRUCTURE OF HYHEL-10 FV-HEN LYSOZYME COMPLEX' PDB 1NDM unspecified 'CRYSTAL STRUCTURE OF FAB FRAGMENT OF ANTIBODY HYHEL- 26COMPLEXED WITH LYSOZYME' PDB 1SF6 unspecified ;BINDING OF N,N',N"-TRIACETYLCHITOTRIOSE TO HEW LYSOZYME: APOWDER DIFFRACTION STUDY ; PDB 3LYZ unspecified LYSOZYME PDB 1BVK unspecified 'HUMANIZED ANTI-LYSOZYME FV COMPLEXED WITH LYSOZYME' PDB 1UIF unspecified 'ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS' PDB 2LYZ unspecified LYSOZYME PDB 1VAU unspecified 'XENON DERIVATIVE OF HEN EGG-WHITE LYSOZYME' PDB 1FLY unspecified 'HEN EGG WHITE LYSOZYME MUTANT WITH ALANINE SUBSTITUTED FORGLYCINE' PDB 1LMA unspecified 'LYSOZYME (88 PERCENT HUMIDITY)' PDB 1YL0 unspecified 'EFFECT OF ALCOHOLS ON PROTEIN HYDRATION' PDB 1J1O unspecified 'CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT LY50F COMPLEXEDWITH HEN EGG WHITE LYSOZYME' PDB 1HC0 unspecified 'STRUCTURE OF LYSOZYME WITH PERIODATE' PDB 2LZT unspecified 'LYSOZYME , TRICLINIC CRYSTAL FORM' PDB 4LZT unspecified 'ATOMIC RESOLUTION REFINEMENT OF TRICLINIC HEW LYSOZYME AT 295K' PDB 1A2Y unspecified 'HEN EGG WHITE LYSOZYME, D18A MUTANT, IN COMPLEX WITH MOUSE MONOCLONAL ANTIBODY D1.3' PDB 1UCO unspecified 'HEN EGG-WHITE LYSOZYME, LOW HUMIDITY FORM' PDB 1LSY unspecified 'LYSOZYME MUTANT WITH ASP 52 REPLACED BY SER (D52S)' PDB 1IC5 unspecified 'CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD99A)-HEN LYSOZYMECOMPLEX' PDB 5LYM unspecified 'MOL_ID: 1; MOLECULE: LYSOZYME; CHAIN: A, B; EC: 3.2 .1.17' PDB 1LSA unspecified 'LYSOZYME (120 K)' PDB 1P2C unspecified 'CRYSTAL STRUCTURE ANALYSIS OF AN ANTI-LYSOZYME ANTIBODY' PDB 1GXV unspecified 'SOLUTION STRUCTURE OF LYSOZYME AT LOW AND HIGH PRESSURE' PDB 1UA6 unspecified 'CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT SFSF COMPLEXED WITHHEN EGG WHITE LYSOZYME COMPLEX' PDB 1AT5 unspecified 'HEN EGG WHITE LYSOZYME WITH A SUCCINIMIDE RESIDUE' PDB 1VAT unspecified 'IODINE DERIVATIVE OF HEN EGG-WHITE LYSOZYME' PDB 1LJ4 unspecified 'CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN AT PH 4 .6' PDB 1VFB unspecified 'FV FRAGMENT OF MOUSE MONOCLONAL ANTIBODY D1.3 COMPLEXED WITH HEN EGG LYSOZYME' PDB 1F3J unspecified 'HISTOCOMPATIBILITY ANTIGEN I-AG7' PDB 1HEM unspecified 'LYSOZYME MUTANT WITH SER 91 REPLACED BY THR (S91T)' PDB 1JA4 unspecified 'BINDING OF N-ACETYLGLUCOSAMINE TO CHICKEN EGG LYSOZYME : APOWDER DIFFRACTION STUDY' PDB 4LYM unspecified 'LYSOZYME (MUCOPEPTIDE N-ACETYLMURAMYL HYDROLASE)' PDB 2A7F unspecified 'ON THE ROUTINE USE OF SOFT X-RAYS IN MACROMOLECULARCRYSTALLOGRAPHY, PART III- THE OPTIMAL DATA COLLECTIONWAVELENGTH' PDB 194L unspecified 'THE 1.40 A STRUCTURE OF SPACEHAB-01 HEN EGG WHITE LYSOZYME' PDB 1FLU unspecified 'HEN EGG WHITE LYSOZYME MUTANT WITH ALANINE SUBSTITUTED FORGLYCINE' PDB 1LZ8 unspecified 'LYSOZYME PHASED ON ANOMALOUS SIGNAL OF SULFURS AND CHLORINES' PDB 1YKX unspecified 'EFFECT OF ALCOHOLS ON PROTEIN HYDRATION' PDB 1BWH unspecified 'THE 1.8 A STRUCTURE OF GROUND CONTROL GROWN TETRAGONAL HEN EGG WHITE LYSOZYME' PDB 2HFM unspecified 'IGG1 FV FRAGMENT (HYHEL-10) AND LYSOZYME COMPLEX ( THEORETICAL MODEL)' PDB 1VDT unspecified 'THE CRYSTAL STRUCTURE OF THE TETRAGONAL FORM OF HEN EGGWHITE LYSOZYME AT 1.7 ANGSTROMS RESOLUTION UNDER BASICCONDITIONS IN SPACE' PDB 1IO5 unspecified 'HYDROGEN AND HYDRATION OF HEN EGG-WHITE LYSOZYME DETERMINEDBY NEUTRON DIFFRACTION' PDB 1LSN unspecified 'LYSOZYME MUTANT WITH SER 91 REPLACED BY ALA (S91A)' PDB 1LZB unspecified 'LYSOZYME CO-CRYSTALLIZED WITH TRI-N-ACETYL-CHITOTRIOSE (PH 4.7)' PDB 1G7I unspecified 'CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME (HEL) COMPLEXEDWITH THE MUTANT ANTI-HEL MONOCLONAL ANTIBODY D1 .3 (VLW92F)' PDB 2BPU unspecified 'THE KEDGE HOLMIUM DERIVATIVE OF HEN EGG-WHITE LYSOZYME AT HIGH RESOLUTION FROM SINGLE WAVELENGTH ANOMALOUS DIFFRACTION' PDB 1LSC unspecified 'LYSOZYME (250 K)' PDB 1VDP unspecified 'THE CRYSTAL STRUCTURE OF THE MONOCLINIC FORM OF HEN EGGWHITE LYSOZYME AT 1.7 ANGSTROMS RESOLUTION IN SPACE' PDB 2YBL unspecified 'NITRATE X-RAY INDUCED REDUCTION ON HEWL CRYSTALS (17.9 MGY)' PDB 2YBN unspecified 'NITRATE X-RAY INDUCED REDUCTION ON HEWL CRYSTALS (28.6 MGY)' PDB 2YBI unspecified 'NITRATE X-RAY INDUCED REDUCTION ON HEWL CRYSTALS (6.62 MGY)' PDB 2YBH unspecified 'NITRATE X-RAY INDUCED REDUCTION ON HEWL CRYSTALS (2.31 MGY).' PDB 2YBM unspecified 'NITRATE X-RAY INDUCED REDUCTION ON HEWL CRYSTALS (23.3 MGY)' PDB 2YDG unspecified 'ASCORBATE CO-CRYSTALLIZED HEWL.' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'De la Mora, E.' 1 'Carmichael, I.' 2 'Garman, E.F.' 3 # _citation.id primary _citation.title 'Effective Scavenging at Cryotemperatures: Further Increasing the Dose Tolerance of Protein Crystals.' _citation.journal_abbrev J.Synchrotron.Radiat. _citation.journal_volume 18 _citation.page_first 346 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM JSYRES _citation.country DK _citation.journal_id_ISSN 0909-0495 _citation.journal_id_CSD 1210 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21525642 _citation.pdbx_database_id_DOI 10.1107/S0909049511007163 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'De La Mora, E.' 1 ? primary 'Carmichael, I.' 2 ? primary 'Garman, E.F.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'LYSOZYME C' 14331.160 1 3.2.1.17 ? ? ? 2 non-polymer syn 'NITRITE ION' 46.005 4 ? ? ? ? 3 water nat water 18.015 51 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D IV, ALLERGEN GAL D 4, HEN EGG WHITE LYSOZYME' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _entity_poly.pdbx_seq_one_letter_code_can ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NITRITE ION' NO2 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 VAL n 1 3 PHE n 1 4 GLY n 1 5 ARG n 1 6 CYS n 1 7 GLU n 1 8 LEU n 1 9 ALA n 1 10 ALA n 1 11 ALA n 1 12 MET n 1 13 LYS n 1 14 ARG n 1 15 HIS n 1 16 GLY n 1 17 LEU n 1 18 ASP n 1 19 ASN n 1 20 TYR n 1 21 ARG n 1 22 GLY n 1 23 TYR n 1 24 SER n 1 25 LEU n 1 26 GLY n 1 27 ASN n 1 28 TRP n 1 29 VAL n 1 30 CYS n 1 31 ALA n 1 32 ALA n 1 33 LYS n 1 34 PHE n 1 35 GLU n 1 36 SER n 1 37 ASN n 1 38 PHE n 1 39 ASN n 1 40 THR n 1 41 GLN n 1 42 ALA n 1 43 THR n 1 44 ASN n 1 45 ARG n 1 46 ASN n 1 47 THR n 1 48 ASP n 1 49 GLY n 1 50 SER n 1 51 THR n 1 52 ASP n 1 53 TYR n 1 54 GLY n 1 55 ILE n 1 56 LEU n 1 57 GLN n 1 58 ILE n 1 59 ASN n 1 60 SER n 1 61 ARG n 1 62 TRP n 1 63 TRP n 1 64 CYS n 1 65 ASN n 1 66 ASP n 1 67 GLY n 1 68 ARG n 1 69 THR n 1 70 PRO n 1 71 GLY n 1 72 SER n 1 73 ARG n 1 74 ASN n 1 75 LEU n 1 76 CYS n 1 77 ASN n 1 78 ILE n 1 79 PRO n 1 80 CYS n 1 81 SER n 1 82 ALA n 1 83 LEU n 1 84 LEU n 1 85 SER n 1 86 SER n 1 87 ASP n 1 88 ILE n 1 89 THR n 1 90 ALA n 1 91 SER n 1 92 VAL n 1 93 ASN n 1 94 CYS n 1 95 ALA n 1 96 LYS n 1 97 LYS n 1 98 ILE n 1 99 VAL n 1 100 SER n 1 101 ASP n 1 102 GLY n 1 103 ASN n 1 104 GLY n 1 105 MET n 1 106 ASN n 1 107 ALA n 1 108 TRP n 1 109 VAL n 1 110 ALA n 1 111 TRP n 1 112 ARG n 1 113 ASN n 1 114 ARG n 1 115 CYS n 1 116 LYS n 1 117 GLY n 1 118 THR n 1 119 ASP n 1 120 VAL n 1 121 GLN n 1 122 ALA n 1 123 TRP n 1 124 ILE n 1 125 ARG n 1 126 GLY n 1 127 CYS n 1 128 ARG n 1 129 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name CHICKEN _entity_src_nat.pdbx_organism_scientific 'GALLUS GALLUS' _entity_src_nat.pdbx_ncbi_taxonomy_id 9031 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NO2 non-polymer . 'NITRITE ION' ? 'N O2 -1' 46.005 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 MET 12 12 12 MET MET A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 HIS 15 15 15 HIS HIS A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 TRP 28 28 28 TRP TRP A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 TRP 62 62 62 TRP TRP A . n A 1 63 TRP 63 63 63 TRP TRP A . n A 1 64 CYS 64 64 64 CYS CYS A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 CYS 76 76 76 CYS CYS A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 CYS 80 80 80 CYS CYS A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 CYS 94 94 94 CYS CYS A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 TRP 108 108 108 TRP TRP A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 TRP 111 111 111 TRP TRP A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 CYS 115 115 115 CYS CYS A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 TRP 123 123 123 TRP TRP A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 ARG 125 125 125 ARG ARG A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 CYS 127 127 127 CYS CYS A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 LEU 129 129 129 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO2 1 1130 1130 NO2 NO2 A . C 2 NO2 1 1131 1131 NO2 NO2 A . D 2 NO2 1 1132 1132 NO2 NO2 A . E 2 NO2 1 1133 1133 NO2 NO2 A . F 3 HOH 1 2001 2001 HOH HOH A . F 3 HOH 2 2002 2002 HOH HOH A . F 3 HOH 3 2003 2003 HOH HOH A . F 3 HOH 4 2004 2004 HOH HOH A . F 3 HOH 5 2005 2005 HOH HOH A . F 3 HOH 6 2006 2006 HOH HOH A . F 3 HOH 7 2007 2007 HOH HOH A . F 3 HOH 8 2008 2008 HOH HOH A . F 3 HOH 9 2009 2009 HOH HOH A . F 3 HOH 10 2010 2010 HOH HOH A . F 3 HOH 11 2011 2011 HOH HOH A . F 3 HOH 12 2012 2012 HOH HOH A . F 3 HOH 13 2013 2013 HOH HOH A . F 3 HOH 14 2014 2014 HOH HOH A . F 3 HOH 15 2015 2015 HOH HOH A . F 3 HOH 16 2016 2016 HOH HOH A . F 3 HOH 17 2017 2017 HOH HOH A . F 3 HOH 18 2018 2018 HOH HOH A . F 3 HOH 19 2019 2019 HOH HOH A . F 3 HOH 20 2020 2020 HOH HOH A . F 3 HOH 21 2021 2021 HOH HOH A . F 3 HOH 22 2022 2022 HOH HOH A . F 3 HOH 23 2023 2023 HOH HOH A . F 3 HOH 24 2024 2024 HOH HOH A . F 3 HOH 25 2025 2025 HOH HOH A . F 3 HOH 26 2026 2026 HOH HOH A . F 3 HOH 27 2027 2027 HOH HOH A . F 3 HOH 28 2028 2028 HOH HOH A . F 3 HOH 29 2029 2029 HOH HOH A . F 3 HOH 30 2030 2030 HOH HOH A . F 3 HOH 31 2031 2031 HOH HOH A . F 3 HOH 32 2032 2032 HOH HOH A . F 3 HOH 33 2033 2033 HOH HOH A . F 3 HOH 34 2034 2034 HOH HOH A . F 3 HOH 35 2035 2035 HOH HOH A . F 3 HOH 36 2036 2036 HOH HOH A . F 3 HOH 37 2037 2037 HOH HOH A . F 3 HOH 38 2038 2038 HOH HOH A . F 3 HOH 39 2039 2039 HOH HOH A . F 3 HOH 40 2040 2040 HOH HOH A . F 3 HOH 41 2041 2041 HOH HOH A . F 3 HOH 42 2042 2042 HOH HOH A . F 3 HOH 43 2043 2043 HOH HOH A . F 3 HOH 44 2044 2044 HOH HOH A . F 3 HOH 45 2045 2045 HOH HOH A . F 3 HOH 46 2046 2046 HOH HOH A . F 3 HOH 47 2047 2047 HOH HOH A . F 3 HOH 48 2048 2048 HOH HOH A . F 3 HOH 49 2049 2049 HOH HOH A . F 3 HOH 50 2050 2050 HOH HOH A . F 3 HOH 51 2051 2051 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0110 ? 1 MOSFLM 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # _cell.entry_id 2YBJ _cell.length_a 78.000 _cell.length_b 78.000 _cell.length_c 38.540 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YBJ _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # _exptl.entry_id 2YBJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.01 _exptl_crystal.density_percent_sol 38.93 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.7 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '200 MM SODIUM ACETATE PH 4.7, 10% W/V NACL.' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2010-05-10 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'EMG-T5 KOHZU DOUBLE CRYSTAL MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.939 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.939 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2YBJ _reflns.observed_criterion_sigma_I 4.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 35.00 _reflns.d_resolution_high 2.00 _reflns.number_obs 8433 _reflns.number_all ? _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.70 _reflns.B_iso_Wilson_estimate 16.938 _reflns.pdbx_redundancy 6.2 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.10 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.11 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.80 _reflns_shell.pdbx_redundancy 6.1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2YBJ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7982 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 55.15 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 98.93 _refine.ls_R_factor_obs 0.20170 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20107 _refine.ls_R_factor_R_free 0.21478 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 393 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.936 _refine.correlation_coeff_Fo_to_Fc_free 0.925 _refine.B_iso_mean 18.489 _refine.aniso_B[1][1] -0.84 _refine.aniso_B[2][2] -0.84 _refine.aniso_B[3][3] 1.69 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 2W1L' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R 0.219 _refine.pdbx_overall_ESU_R_Free 0.160 _refine.overall_SU_ML 0.103 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.650 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1001 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 51 _refine_hist.number_atoms_total 1064 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 55.15 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.021 ? 1033 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.954 1.906 ? 1393 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.096 5.000 ? 128 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.828 23.000 ? 50 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.920 15.000 ? 166 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.460 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.076 0.200 ? 144 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 794 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.402 1.500 ? 643 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.803 2.000 ? 1008 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.172 3.000 ? 390 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 2.020 4.500 ? 385 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.number_reflns_R_work 583 _refine_ls_shell.R_factor_R_work 0.212 _refine_ls_shell.percent_reflns_obs 99.51 _refine_ls_shell.R_factor_R_free 0.212 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 28 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 2YBJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2YBJ _struct.title 'Nitrate X-ray induced reduction on HEWL crystals (12.31 MGy)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YBJ _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, NITRATE REDUCTION, DOSE TOLERANCE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LYSC_CHICK _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P00698 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YBJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 129 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00698 _struct_ref_seq.db_align_beg 19 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 147 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 129 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 4 ? HIS A 15 ? GLY A 4 HIS A 15 1 ? 12 HELX_P HELX_P2 2 SER A 24 ? ASN A 37 ? SER A 24 ASN A 37 1 ? 14 HELX_P HELX_P3 3 CYS A 80 ? SER A 85 ? CYS A 80 SER A 85 5 ? 6 HELX_P HELX_P4 4 ILE A 88 ? SER A 100 ? ILE A 88 SER A 100 1 ? 13 HELX_P HELX_P5 5 ASN A 103 ? ALA A 107 ? ASN A 103 ALA A 107 5 ? 5 HELX_P HELX_P6 6 TRP A 108 ? CYS A 115 ? TRP A 108 CYS A 115 1 ? 8 HELX_P HELX_P7 7 ASP A 119 ? ARG A 125 ? ASP A 119 ARG A 125 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 127 SG ? ? A CYS 6 A CYS 127 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf2 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 115 SG ? ? A CYS 30 A CYS 115 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf3 disulf ? ? A CYS 64 SG ? ? ? 1_555 A CYS 80 SG ? ? A CYS 64 A CYS 80 1_555 ? ? ? ? ? ? ? 2.044 ? ? disulf4 disulf ? ? A CYS 76 SG ? ? ? 1_555 A CYS 94 SG ? ? A CYS 76 A CYS 94 1_555 ? ? ? ? ? ? ? 2.037 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 6 ? CYS A 127 ? CYS A 6 ? 1_555 CYS A 127 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 30 ? CYS A 115 ? CYS A 30 ? 1_555 CYS A 115 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 64 ? CYS A 80 ? CYS A 64 ? 1_555 CYS A 80 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 76 ? CYS A 94 ? CYS A 76 ? 1_555 CYS A 94 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 THR A 43 ? ARG A 45 ? THR A 43 ARG A 45 AA 2 THR A 51 ? TYR A 53 ? THR A 51 TYR A 53 AA 3 ILE A 58 ? ASN A 59 ? ILE A 58 ASN A 59 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ASN A 44 ? N ASN A 44 O ASP A 52 ? O ASP A 52 AA 2 3 N TYR A 53 ? N TYR A 53 O ILE A 58 ? O ILE A 58 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NO2 1130 ? 9 'BINDING SITE FOR RESIDUE NO2 A 1130' AC2 Software A NO2 1131 ? 4 'BINDING SITE FOR RESIDUE NO2 A 1131' AC3 Software A NO2 1132 ? 6 'BINDING SITE FOR RESIDUE NO2 A 1132' AC4 Software A NO2 1133 ? 6 'BINDING SITE FOR RESIDUE NO2 A 1133' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 CYS A 64 ? CYS A 64 . ? 1_555 ? 2 AC1 9 ASN A 65 ? ASN A 65 . ? 1_555 ? 3 AC1 9 ASP A 66 ? ASP A 66 . ? 1_555 ? 4 AC1 9 GLY A 67 ? GLY A 67 . ? 1_555 ? 5 AC1 9 ARG A 68 ? ARG A 68 . ? 1_555 ? 6 AC1 9 THR A 69 ? THR A 69 . ? 1_555 ? 7 AC1 9 SER A 72 ? SER A 72 . ? 1_555 ? 8 AC1 9 HOH F . ? HOH A 2025 . ? 1_555 ? 9 AC1 9 HOH F . ? HOH A 2051 . ? 1_555 ? 10 AC2 4 GLY A 4 ? GLY A 4 . ? 1_555 ? 11 AC2 4 ARG A 5 ? ARG A 5 . ? 1_555 ? 12 AC2 4 CYS A 6 ? CYS A 6 . ? 1_555 ? 13 AC2 4 GLU A 7 ? GLU A 7 . ? 1_555 ? 14 AC3 6 PHE A 3 ? PHE A 3 . ? 1_555 ? 15 AC3 6 ARG A 14 ? ARG A 14 . ? 1_555 ? 16 AC3 6 HIS A 15 ? HIS A 15 . ? 1_555 ? 17 AC3 6 SER A 86 ? SER A 86 . ? 1_555 ? 18 AC3 6 ASP A 87 ? ASP A 87 . ? 1_555 ? 19 AC3 6 ILE A 88 ? ILE A 88 . ? 1_555 ? 20 AC4 6 SER A 24 ? SER A 24 . ? 1_555 ? 21 AC4 6 LEU A 25 ? LEU A 25 . ? 1_555 ? 22 AC4 6 GLY A 26 ? GLY A 26 . ? 1_555 ? 23 AC4 6 VAL A 120 ? VAL A 120 . ? 1_555 ? 24 AC4 6 GLN A 121 ? GLN A 121 . ? 1_555 ? 25 AC4 6 ILE A 124 ? ILE A 124 . ? 1_555 ? # _pdbx_entry_details.entry_id 2YBJ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 68 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -144.45 _pdbx_validate_torsion.psi 16.14 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2016 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 NO2 N N N N 250 NO2 O1 O N N 251 NO2 O2 O N N 252 PHE N N N N 253 PHE CA C N S 254 PHE C C N N 255 PHE O O N N 256 PHE CB C N N 257 PHE CG C Y N 258 PHE CD1 C Y N 259 PHE CD2 C Y N 260 PHE CE1 C Y N 261 PHE CE2 C Y N 262 PHE CZ C Y N 263 PHE OXT O N N 264 PHE H H N N 265 PHE H2 H N N 266 PHE HA H N N 267 PHE HB2 H N N 268 PHE HB3 H N N 269 PHE HD1 H N N 270 PHE HD2 H N N 271 PHE HE1 H N N 272 PHE HE2 H N N 273 PHE HZ H N N 274 PHE HXT H N N 275 PRO N N N N 276 PRO CA C N S 277 PRO C C N N 278 PRO O O N N 279 PRO CB C N N 280 PRO CG C N N 281 PRO CD C N N 282 PRO OXT O N N 283 PRO H H N N 284 PRO HA H N N 285 PRO HB2 H N N 286 PRO HB3 H N N 287 PRO HG2 H N N 288 PRO HG3 H N N 289 PRO HD2 H N N 290 PRO HD3 H N N 291 PRO HXT H N N 292 SER N N N N 293 SER CA C N S 294 SER C C N N 295 SER O O N N 296 SER CB C N N 297 SER OG O N N 298 SER OXT O N N 299 SER H H N N 300 SER H2 H N N 301 SER HA H N N 302 SER HB2 H N N 303 SER HB3 H N N 304 SER HG H N N 305 SER HXT H N N 306 THR N N N N 307 THR CA C N S 308 THR C C N N 309 THR O O N N 310 THR CB C N R 311 THR OG1 O N N 312 THR CG2 C N N 313 THR OXT O N N 314 THR H H N N 315 THR H2 H N N 316 THR HA H N N 317 THR HB H N N 318 THR HG1 H N N 319 THR HG21 H N N 320 THR HG22 H N N 321 THR HG23 H N N 322 THR HXT H N N 323 TRP N N N N 324 TRP CA C N S 325 TRP C C N N 326 TRP O O N N 327 TRP CB C N N 328 TRP CG C Y N 329 TRP CD1 C Y N 330 TRP CD2 C Y N 331 TRP NE1 N Y N 332 TRP CE2 C Y N 333 TRP CE3 C Y N 334 TRP CZ2 C Y N 335 TRP CZ3 C Y N 336 TRP CH2 C Y N 337 TRP OXT O N N 338 TRP H H N N 339 TRP H2 H N N 340 TRP HA H N N 341 TRP HB2 H N N 342 TRP HB3 H N N 343 TRP HD1 H N N 344 TRP HE1 H N N 345 TRP HE3 H N N 346 TRP HZ2 H N N 347 TRP HZ3 H N N 348 TRP HH2 H N N 349 TRP HXT H N N 350 TYR N N N N 351 TYR CA C N S 352 TYR C C N N 353 TYR O O N N 354 TYR CB C N N 355 TYR CG C Y N 356 TYR CD1 C Y N 357 TYR CD2 C Y N 358 TYR CE1 C Y N 359 TYR CE2 C Y N 360 TYR CZ C Y N 361 TYR OH O N N 362 TYR OXT O N N 363 TYR H H N N 364 TYR H2 H N N 365 TYR HA H N N 366 TYR HB2 H N N 367 TYR HB3 H N N 368 TYR HD1 H N N 369 TYR HD2 H N N 370 TYR HE1 H N N 371 TYR HE2 H N N 372 TYR HH H N N 373 TYR HXT H N N 374 VAL N N N N 375 VAL CA C N S 376 VAL C C N N 377 VAL O O N N 378 VAL CB C N N 379 VAL CG1 C N N 380 VAL CG2 C N N 381 VAL OXT O N N 382 VAL H H N N 383 VAL H2 H N N 384 VAL HA H N N 385 VAL HB H N N 386 VAL HG11 H N N 387 VAL HG12 H N N 388 VAL HG13 H N N 389 VAL HG21 H N N 390 VAL HG22 H N N 391 VAL HG23 H N N 392 VAL HXT H N N 393 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 NO2 N O1 doub N N 237 NO2 N O2 sing N N 238 PHE N CA sing N N 239 PHE N H sing N N 240 PHE N H2 sing N N 241 PHE CA C sing N N 242 PHE CA CB sing N N 243 PHE CA HA sing N N 244 PHE C O doub N N 245 PHE C OXT sing N N 246 PHE CB CG sing N N 247 PHE CB HB2 sing N N 248 PHE CB HB3 sing N N 249 PHE CG CD1 doub Y N 250 PHE CG CD2 sing Y N 251 PHE CD1 CE1 sing Y N 252 PHE CD1 HD1 sing N N 253 PHE CD2 CE2 doub Y N 254 PHE CD2 HD2 sing N N 255 PHE CE1 CZ doub Y N 256 PHE CE1 HE1 sing N N 257 PHE CE2 CZ sing Y N 258 PHE CE2 HE2 sing N N 259 PHE CZ HZ sing N N 260 PHE OXT HXT sing N N 261 PRO N CA sing N N 262 PRO N CD sing N N 263 PRO N H sing N N 264 PRO CA C sing N N 265 PRO CA CB sing N N 266 PRO CA HA sing N N 267 PRO C O doub N N 268 PRO C OXT sing N N 269 PRO CB CG sing N N 270 PRO CB HB2 sing N N 271 PRO CB HB3 sing N N 272 PRO CG CD sing N N 273 PRO CG HG2 sing N N 274 PRO CG HG3 sing N N 275 PRO CD HD2 sing N N 276 PRO CD HD3 sing N N 277 PRO OXT HXT sing N N 278 SER N CA sing N N 279 SER N H sing N N 280 SER N H2 sing N N 281 SER CA C sing N N 282 SER CA CB sing N N 283 SER CA HA sing N N 284 SER C O doub N N 285 SER C OXT sing N N 286 SER CB OG sing N N 287 SER CB HB2 sing N N 288 SER CB HB3 sing N N 289 SER OG HG sing N N 290 SER OXT HXT sing N N 291 THR N CA sing N N 292 THR N H sing N N 293 THR N H2 sing N N 294 THR CA C sing N N 295 THR CA CB sing N N 296 THR CA HA sing N N 297 THR C O doub N N 298 THR C OXT sing N N 299 THR CB OG1 sing N N 300 THR CB CG2 sing N N 301 THR CB HB sing N N 302 THR OG1 HG1 sing N N 303 THR CG2 HG21 sing N N 304 THR CG2 HG22 sing N N 305 THR CG2 HG23 sing N N 306 THR OXT HXT sing N N 307 TRP N CA sing N N 308 TRP N H sing N N 309 TRP N H2 sing N N 310 TRP CA C sing N N 311 TRP CA CB sing N N 312 TRP CA HA sing N N 313 TRP C O doub N N 314 TRP C OXT sing N N 315 TRP CB CG sing N N 316 TRP CB HB2 sing N N 317 TRP CB HB3 sing N N 318 TRP CG CD1 doub Y N 319 TRP CG CD2 sing Y N 320 TRP CD1 NE1 sing Y N 321 TRP CD1 HD1 sing N N 322 TRP CD2 CE2 doub Y N 323 TRP CD2 CE3 sing Y N 324 TRP NE1 CE2 sing Y N 325 TRP NE1 HE1 sing N N 326 TRP CE2 CZ2 sing Y N 327 TRP CE3 CZ3 doub Y N 328 TRP CE3 HE3 sing N N 329 TRP CZ2 CH2 doub Y N 330 TRP CZ2 HZ2 sing N N 331 TRP CZ3 CH2 sing Y N 332 TRP CZ3 HZ3 sing N N 333 TRP CH2 HH2 sing N N 334 TRP OXT HXT sing N N 335 TYR N CA sing N N 336 TYR N H sing N N 337 TYR N H2 sing N N 338 TYR CA C sing N N 339 TYR CA CB sing N N 340 TYR CA HA sing N N 341 TYR C O doub N N 342 TYR C OXT sing N N 343 TYR CB CG sing N N 344 TYR CB HB2 sing N N 345 TYR CB HB3 sing N N 346 TYR CG CD1 doub Y N 347 TYR CG CD2 sing Y N 348 TYR CD1 CE1 sing Y N 349 TYR CD1 HD1 sing N N 350 TYR CD2 CE2 doub Y N 351 TYR CD2 HD2 sing N N 352 TYR CE1 CZ doub Y N 353 TYR CE1 HE1 sing N N 354 TYR CE2 CZ sing Y N 355 TYR CE2 HE2 sing N N 356 TYR CZ OH sing N N 357 TYR OH HH sing N N 358 TYR OXT HXT sing N N 359 VAL N CA sing N N 360 VAL N H sing N N 361 VAL N H2 sing N N 362 VAL CA C sing N N 363 VAL CA CB sing N N 364 VAL CA HA sing N N 365 VAL C O doub N N 366 VAL C OXT sing N N 367 VAL CB CG1 sing N N 368 VAL CB CG2 sing N N 369 VAL CB HB sing N N 370 VAL CG1 HG11 sing N N 371 VAL CG1 HG12 sing N N 372 VAL CG1 HG13 sing N N 373 VAL CG2 HG21 sing N N 374 VAL CG2 HG22 sing N N 375 VAL CG2 HG23 sing N N 376 VAL OXT HXT sing N N 377 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2W1L _pdbx_initial_refinement_model.details 'PDB ENTRY 2W1L' # _atom_sites.entry_id 2YBJ _atom_sites.fract_transf_matrix[1][1] 0.012821 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012821 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025947 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_