HEADER OXIDOREDUCTASE/PEPTIDE 09-MAR-11 2YBP TITLE JMJD2A COMPLEXED WITH R-2-HYDROXYGLUTARATE AND HISTONE H3K36ME3 TITLE 2 PEPTIDE (30-41) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 4A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 1-359; COMPND 5 SYNONYM: JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 3A, COMPND 6 JUMONJI DOMAIN-CONTAINING PROTEIN 2A; COMPND 7 EC: 1.14.11.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: HISTONE H3.1T; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: HISTONE H3K36ME3 PEPTIDE, RESIDUES 31-42; COMPND 13 SYNONYM: H3/T, H3T, H3/G; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS OXIDOREDUCTASE-PEPTIDE COMPLEX, NON-HEME IRON, DIOXYGENASE, DOUBLE- KEYWDS 2 STRANDED BETA HELIX, DSBH, FACIAL TRIAD, METAL BINDING PROTEIN, KEYWDS 3 EPIGENETIC AND TRANSCRIPTION REGULATION, CHROMATIN REGULATOR, KEYWDS 4 HYDROXYLATION EXPDTA X-RAY DIFFRACTION AUTHOR R.CHOWDHURY,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 5 20-DEC-23 2YBP 1 REMARK LINK REVDAT 4 30-JAN-19 2YBP 1 REMARK REVDAT 3 21-FEB-18 2YBP 1 AUTHOR JRNL REVDAT 2 11-MAY-11 2YBP 1 JRNL REVDAT 1 30-MAR-11 2YBP 0 JRNL AUTH R.CHOWDHURY,K.K.YEOH,Y.M.TIAN,L.HILLRINGHAUS,E.A.BAGG, JRNL AUTH 2 N.R.ROSE,I.K.LEUNG,X.S.LI,E.C.WOON,M.YANG,M.A.MCDONOUGH, JRNL AUTH 3 O.N.KING,I.J.CLIFTON,R.J.KLOSE,T.D.CLARIDGE,P.J.RATCLIFFE, JRNL AUTH 4 C.J.SCHOFIELD,A.KAWAMURA JRNL TITL THE ONCOMETABOLITE 2-HYDROXYGLUTARATE INHIBITS HISTONE JRNL TITL 2 LYSINE DEMETHYLASES. JRNL REF EMBO REP. V. 12 463 2011 JRNL REFN ESSN 1469-3178 JRNL PMID 21460794 JRNL DOI 10.1038/EMBOR.2011.43 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 92231.650 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 63521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.700 REMARK 3 FREE R VALUE TEST SET COUNT : 5515 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2410 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 278 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5871 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.40000 REMARK 3 B22 (A**2) : 3.76000 REMARK 3 B33 (A**2) : -1.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 45.48 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : R2G.PAR REMARK 3 PARAMETER FILE 5 : GOL.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : R2G.TOP REMARK 3 TOPOLOGY FILE 5 : GOL.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ALTHOUGH THE LIGAND, 2HG WAS MODELLED REMARK 3 WITH FULL OCCUPANCY, ADDITIONAL POSITIVE DIFFERENCE DENSITY NEAR REMARK 3 THE LIGAND BINDING SITE WAS SUGGESTIVE OF A POSSIBLE LOW REMARK 3 OCCUPANCY ALTERNATE CONFORMATION OR A BUFFER MOLECULE. REMARK 4 REMARK 4 2YBP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1290047584. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63521 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 45.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2OX0 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRATE PH 5.5, 4 MM NICL2, 20% REMARK 280 PEG 3350, VAPOUR DIFFUSION, SITTING DROP, TEMPERATURE 277K., REMARK 280 VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 50.64550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.83400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.64550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.83400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLU A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 GLU A 356 REMARK 465 SER A 357 REMARK 465 GLU A 358 REMARK 465 LEU A 359 REMARK 465 MET B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 356 REMARK 465 SER B 357 REMARK 465 GLU B 358 REMARK 465 LEU B 359 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 13 CD NE CZ NH1 NH2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 ARG A 110 CD NE CZ NH1 NH2 REMARK 470 GLU A 115 CD OE1 OE2 REMARK 470 ARG A 154 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 232 CD OE1 NE2 REMARK 470 LYS A 314 CG CD CE NZ REMARK 470 ARG B 13 NE CZ NH1 NH2 REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 LYS B 99 CG CD CE NZ REMARK 470 ARG B 110 CD NE CZ NH1 NH2 REMARK 470 SER B 112 CB OG REMARK 470 GLU B 113 OE1 OE2 REMARK 470 GLU B 115 CD OE1 OE2 REMARK 470 LYS B 143 CE NZ REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 ARG B 221 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 330 CG CD CE NZ REMARK 470 LYS B 336 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 112 -73.99 -98.16 REMARK 500 ASN A 128 67.37 34.39 REMARK 500 ARG A 152 80.83 -154.65 REMARK 500 LYS A 182 -0.21 73.90 REMARK 500 ALA A 236 38.35 -98.70 REMARK 500 GLU A 349 -6.82 -57.06 REMARK 500 ARG B 152 81.01 -156.82 REMARK 500 ALA B 236 44.36 -97.71 REMARK 500 ASP B 311 50.05 37.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1356 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 188 NE2 REMARK 620 2 GLU A 190 OE2 99.2 REMARK 620 3 HIS A 276 NE2 90.9 83.5 REMARK 620 4 2HG A1359 O1 167.5 91.0 97.4 REMARK 620 5 2HG A1359 O3 94.3 163.8 105.2 74.5 REMARK 620 6 HOH A2168 O 81.1 89.4 168.3 92.0 84.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1357 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 234 SG REMARK 620 2 HIS A 240 NE2 105.5 REMARK 620 3 CYS A 306 SG 117.1 115.7 REMARK 620 4 CYS A 308 SG 109.1 93.1 113.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B1356 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 188 NE2 REMARK 620 2 GLU B 190 OE2 102.6 REMARK 620 3 HIS B 276 NE2 90.8 81.5 REMARK 620 4 2HG B1358 O1 160.8 91.6 104.3 REMARK 620 5 2HG B1358 O3 92.9 162.9 106.0 71.7 REMARK 620 6 HOH B2178 O 85.4 90.7 170.3 81.5 83.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1357 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 234 SG REMARK 620 2 HIS B 240 NE2 112.3 REMARK 620 3 CYS B 306 SG 113.6 115.5 REMARK 620 4 CYS B 308 SG 113.9 91.7 107.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1357 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1358 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2HG A 1359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 1356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1357 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2HG B 1358 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GFA RELATED DB: PDB REMARK 900 DOUBLE TUDOR DOMAIN COMPLEX STRUCTURE REMARK 900 RELATED ID: 2WWJ RELATED DB: PDB REMARK 900 STRUCTURE OF JMJD2A COMPLEXED WITH INHIBITOR 10A REMARK 900 RELATED ID: 2VD7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JMJD2A COMPLEXED WITH INHIBITOR PYRIDINE-2,4- REMARK 900 DICARBOXYLIC ACID REMARK 900 RELATED ID: 2YBS RELATED DB: PDB REMARK 900 JMJD2A COMPLEXED WITH S-2-HYDROXYGLUTARATE AND HISTONE H3K36ME3 REMARK 900 PEPTIDE (30-41) REMARK 900 RELATED ID: 2V1D RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF LSD1-COREST SELECTIVITY IN HISTONE H3 REMARK 900 RECOGNITION REMARK 900 RELATED ID: 2GP3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC CORE COMAIN OF JMJD2A REMARK 900 RELATED ID: 2GP5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CATALYTIC CORE DOMAIN OF JMJD2ACOMPLEXED WITH REMARK 900 ALPHA-KETOGLUTARATE REMARK 900 RELATED ID: 2YBK RELATED DB: PDB REMARK 900 JMJD2A COMPLEXED WITH R-2-HYDROXYGLUTARATE REMARK 900 RELATED ID: 2GF7 RELATED DB: PDB REMARK 900 DOUBLE TUDOR DOMAIN STRUCTURE REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE 1 IN UNP Q16695 IS AN INITIATOR METHIONINE AND REMARK 999 IS REMOVED. DBREF 2YBP A 1 359 UNP O75164 KDM4A_HUMAN 1 359 DBREF 2YBP B 1 359 UNP O75164 KDM4A_HUMAN 1 359 DBREF 2YBP C 30 41 UNP Q16695 H31T_HUMAN 31 42 DBREF 2YBP D 30 41 UNP Q16695 H31T_HUMAN 31 42 SEQADV 2YBP MET A -21 UNP O75164 EXPRESSION TAG SEQADV 2YBP HIS A -20 UNP O75164 EXPRESSION TAG SEQADV 2YBP HIS A -19 UNP O75164 EXPRESSION TAG SEQADV 2YBP HIS A -18 UNP O75164 EXPRESSION TAG SEQADV 2YBP HIS A -17 UNP O75164 EXPRESSION TAG SEQADV 2YBP HIS A -16 UNP O75164 EXPRESSION TAG SEQADV 2YBP HIS A -15 UNP O75164 EXPRESSION TAG SEQADV 2YBP SER A -14 UNP O75164 EXPRESSION TAG SEQADV 2YBP SER A -13 UNP O75164 EXPRESSION TAG SEQADV 2YBP GLY A -12 UNP O75164 EXPRESSION TAG SEQADV 2YBP VAL A -11 UNP O75164 EXPRESSION TAG SEQADV 2YBP ASP A -10 UNP O75164 EXPRESSION TAG SEQADV 2YBP LEU A -9 UNP O75164 EXPRESSION TAG SEQADV 2YBP GLY A -8 UNP O75164 EXPRESSION TAG SEQADV 2YBP THR A -7 UNP O75164 EXPRESSION TAG SEQADV 2YBP GLU A -6 UNP O75164 EXPRESSION TAG SEQADV 2YBP ASN A -5 UNP O75164 EXPRESSION TAG SEQADV 2YBP LEU A -4 UNP O75164 EXPRESSION TAG SEQADV 2YBP TYR A -3 UNP O75164 EXPRESSION TAG SEQADV 2YBP PHE A -2 UNP O75164 EXPRESSION TAG SEQADV 2YBP GLN A -1 UNP O75164 EXPRESSION TAG SEQADV 2YBP SER A 0 UNP O75164 EXPRESSION TAG SEQADV 2YBP MET B -21 UNP O75164 EXPRESSION TAG SEQADV 2YBP HIS B -20 UNP O75164 EXPRESSION TAG SEQADV 2YBP HIS B -19 UNP O75164 EXPRESSION TAG SEQADV 2YBP HIS B -18 UNP O75164 EXPRESSION TAG SEQADV 2YBP HIS B -17 UNP O75164 EXPRESSION TAG SEQADV 2YBP HIS B -16 UNP O75164 EXPRESSION TAG SEQADV 2YBP HIS B -15 UNP O75164 EXPRESSION TAG SEQADV 2YBP SER B -14 UNP O75164 EXPRESSION TAG SEQADV 2YBP SER B -13 UNP O75164 EXPRESSION TAG SEQADV 2YBP GLY B -12 UNP O75164 EXPRESSION TAG SEQADV 2YBP VAL B -11 UNP O75164 EXPRESSION TAG SEQADV 2YBP ASP B -10 UNP O75164 EXPRESSION TAG SEQADV 2YBP LEU B -9 UNP O75164 EXPRESSION TAG SEQADV 2YBP GLY B -8 UNP O75164 EXPRESSION TAG SEQADV 2YBP THR B -7 UNP O75164 EXPRESSION TAG SEQADV 2YBP GLU B -6 UNP O75164 EXPRESSION TAG SEQADV 2YBP ASN B -5 UNP O75164 EXPRESSION TAG SEQADV 2YBP LEU B -4 UNP O75164 EXPRESSION TAG SEQADV 2YBP TYR B -3 UNP O75164 EXPRESSION TAG SEQADV 2YBP PHE B -2 UNP O75164 EXPRESSION TAG SEQADV 2YBP GLN B -1 UNP O75164 EXPRESSION TAG SEQADV 2YBP SER B 0 UNP O75164 EXPRESSION TAG SEQRES 1 A 381 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 381 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA SER GLU SEQRES 3 A 381 SER GLU THR LEU ASN PRO SER ALA ARG ILE MET THR PHE SEQRES 4 A 381 TYR PRO THR MET GLU GLU PHE ARG ASN PHE SER ARG TYR SEQRES 5 A 381 ILE ALA TYR ILE GLU SER GLN GLY ALA HIS ARG ALA GLY SEQRES 6 A 381 LEU ALA LYS VAL VAL PRO PRO LYS GLU TRP LYS PRO ARG SEQRES 7 A 381 ALA SER TYR ASP ASP ILE ASP ASP LEU VAL ILE PRO ALA SEQRES 8 A 381 PRO ILE GLN GLN LEU VAL THR GLY GLN SER GLY LEU PHE SEQRES 9 A 381 THR GLN TYR ASN ILE GLN LYS LYS ALA MET THR VAL ARG SEQRES 10 A 381 GLU PHE ARG LYS ILE ALA ASN SER ASP LYS TYR CYS THR SEQRES 11 A 381 PRO ARG TYR SER GLU PHE GLU GLU LEU GLU ARG LYS TYR SEQRES 12 A 381 TRP LYS ASN LEU THR PHE ASN PRO PRO ILE TYR GLY ALA SEQRES 13 A 381 ASP VAL ASN GLY THR LEU TYR GLU LYS HIS VAL ASP GLU SEQRES 14 A 381 TRP ASN ILE GLY ARG LEU ARG THR ILE LEU ASP LEU VAL SEQRES 15 A 381 GLU LYS GLU SER GLY ILE THR ILE GLU GLY VAL ASN THR SEQRES 16 A 381 PRO TYR LEU TYR PHE GLY MET TRP LYS THR SER PHE ALA SEQRES 17 A 381 TRP HIS THR GLU ASP MET ASP LEU TYR SER ILE ASN TYR SEQRES 18 A 381 LEU HIS PHE GLY GLU PRO LYS SER TRP TYR SER VAL PRO SEQRES 19 A 381 PRO GLU HIS GLY LYS ARG LEU GLU ARG LEU ALA LYS GLY SEQRES 20 A 381 PHE PHE PRO GLY SER ALA GLN SER CYS GLU ALA PHE LEU SEQRES 21 A 381 ARG HIS LYS MET THR LEU ILE SER PRO LEU MET LEU LYS SEQRES 22 A 381 LYS TYR GLY ILE PRO PHE ASP LYS VAL THR GLN GLU ALA SEQRES 23 A 381 GLY GLU PHE MET ILE THR PHE PRO TYR GLY TYR HIS ALA SEQRES 24 A 381 GLY PHE ASN HIS GLY PHE ASN CYS ALA GLU SER THR ASN SEQRES 25 A 381 PHE ALA THR ARG ARG TRP ILE GLU TYR GLY LYS GLN ALA SEQRES 26 A 381 VAL LEU CYS SER CYS ARG LYS ASP MET VAL LYS ILE SER SEQRES 27 A 381 MET ASP VAL PHE VAL ARG LYS PHE GLN PRO GLU ARG TYR SEQRES 28 A 381 LYS LEU TRP LYS ALA GLY LYS ASP ASN THR VAL ILE ASP SEQRES 29 A 381 HIS THR LEU PRO THR PRO GLU ALA ALA GLU PHE LEU LYS SEQRES 30 A 381 GLU SER GLU LEU SEQRES 1 B 381 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 381 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA SER GLU SEQRES 3 B 381 SER GLU THR LEU ASN PRO SER ALA ARG ILE MET THR PHE SEQRES 4 B 381 TYR PRO THR MET GLU GLU PHE ARG ASN PHE SER ARG TYR SEQRES 5 B 381 ILE ALA TYR ILE GLU SER GLN GLY ALA HIS ARG ALA GLY SEQRES 6 B 381 LEU ALA LYS VAL VAL PRO PRO LYS GLU TRP LYS PRO ARG SEQRES 7 B 381 ALA SER TYR ASP ASP ILE ASP ASP LEU VAL ILE PRO ALA SEQRES 8 B 381 PRO ILE GLN GLN LEU VAL THR GLY GLN SER GLY LEU PHE SEQRES 9 B 381 THR GLN TYR ASN ILE GLN LYS LYS ALA MET THR VAL ARG SEQRES 10 B 381 GLU PHE ARG LYS ILE ALA ASN SER ASP LYS TYR CYS THR SEQRES 11 B 381 PRO ARG TYR SER GLU PHE GLU GLU LEU GLU ARG LYS TYR SEQRES 12 B 381 TRP LYS ASN LEU THR PHE ASN PRO PRO ILE TYR GLY ALA SEQRES 13 B 381 ASP VAL ASN GLY THR LEU TYR GLU LYS HIS VAL ASP GLU SEQRES 14 B 381 TRP ASN ILE GLY ARG LEU ARG THR ILE LEU ASP LEU VAL SEQRES 15 B 381 GLU LYS GLU SER GLY ILE THR ILE GLU GLY VAL ASN THR SEQRES 16 B 381 PRO TYR LEU TYR PHE GLY MET TRP LYS THR SER PHE ALA SEQRES 17 B 381 TRP HIS THR GLU ASP MET ASP LEU TYR SER ILE ASN TYR SEQRES 18 B 381 LEU HIS PHE GLY GLU PRO LYS SER TRP TYR SER VAL PRO SEQRES 19 B 381 PRO GLU HIS GLY LYS ARG LEU GLU ARG LEU ALA LYS GLY SEQRES 20 B 381 PHE PHE PRO GLY SER ALA GLN SER CYS GLU ALA PHE LEU SEQRES 21 B 381 ARG HIS LYS MET THR LEU ILE SER PRO LEU MET LEU LYS SEQRES 22 B 381 LYS TYR GLY ILE PRO PHE ASP LYS VAL THR GLN GLU ALA SEQRES 23 B 381 GLY GLU PHE MET ILE THR PHE PRO TYR GLY TYR HIS ALA SEQRES 24 B 381 GLY PHE ASN HIS GLY PHE ASN CYS ALA GLU SER THR ASN SEQRES 25 B 381 PHE ALA THR ARG ARG TRP ILE GLU TYR GLY LYS GLN ALA SEQRES 26 B 381 VAL LEU CYS SER CYS ARG LYS ASP MET VAL LYS ILE SER SEQRES 27 B 381 MET ASP VAL PHE VAL ARG LYS PHE GLN PRO GLU ARG TYR SEQRES 28 B 381 LYS LEU TRP LYS ALA GLY LYS ASP ASN THR VAL ILE ASP SEQRES 29 B 381 HIS THR LEU PRO THR PRO GLU ALA ALA GLU PHE LEU LYS SEQRES 30 B 381 GLU SER GLU LEU SEQRES 1 C 12 PRO ALA THR GLY GLY VAL M3L LYS PRO HIS ARG TYR SEQRES 1 D 12 PRO ALA THR GLY GLY VAL M3L LYS PRO HIS ARG TYR MODRES 2YBP M3L C 36 LYS N-TRIMETHYLLYSINE MODRES 2YBP M3L D 36 LYS N-TRIMETHYLLYSINE HET M3L C 36 12 HET M3L D 36 12 HET NI A1356 1 HET ZN A1357 1 HET GOL A1358 6 HET 2HG A1359 10 HET NI B1356 1 HET ZN B1357 1 HET 2HG B1358 10 HETNAM M3L N-TRIMETHYLLYSINE HETNAM NI NICKEL (II) ION HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM 2HG (2R)-2-HYDROXYPENTANEDIOIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 M3L 2(C9 H21 N2 O2 1+) FORMUL 5 NI 2(NI 2+) FORMUL 6 ZN 2(ZN 2+) FORMUL 7 GOL C3 H8 O3 FORMUL 8 2HG 2(C5 H8 O5) FORMUL 12 HOH *610(H2 O) HELIX 1 1 THR A 20 ARG A 25 1 6 HELIX 2 2 ASN A 26 GLN A 37 1 12 HELIX 3 3 GLY A 38 ALA A 42 5 5 HELIX 4 4 VAL A 94 SER A 103 1 10 HELIX 5 5 GLU A 113 LEU A 125 1 13 HELIX 6 6 THR A 155 LEU A 157 5 3 HELIX 7 7 ASP A 158 GLY A 165 1 8 HELIX 8 8 GLU A 190 LEU A 194 5 5 HELIX 9 9 PRO A 212 GLU A 214 5 3 HELIX 10 10 HIS A 215 PHE A 227 1 13 HELIX 11 11 PHE A 227 CYS A 234 1 8 HELIX 12 12 ALA A 236 LYS A 241 5 6 HELIX 13 13 SER A 246 TYR A 253 1 8 HELIX 14 14 ARG A 295 ALA A 303 1 9 HELIX 15 15 MET A 317 GLN A 325 1 9 HELIX 16 16 ARG A 328 ALA A 334 1 7 HELIX 17 17 THR A 347 LEU A 354 5 8 HELIX 18 18 SER B 3 LEU B 8 1 6 HELIX 19 19 THR B 20 ARG B 25 1 6 HELIX 20 20 ASN B 26 GLN B 37 1 12 HELIX 21 21 GLY B 38 ALA B 42 5 5 HELIX 22 22 VAL B 94 SER B 103 1 10 HELIX 23 23 GLU B 113 LEU B 125 1 13 HELIX 24 24 THR B 155 LEU B 157 5 3 HELIX 25 25 ASP B 158 GLY B 165 1 8 HELIX 26 26 GLU B 190 LEU B 194 5 5 HELIX 27 27 PRO B 212 GLU B 214 5 3 HELIX 28 28 HIS B 215 PHE B 227 1 13 HELIX 29 29 PHE B 227 CYS B 234 1 8 HELIX 30 30 ALA B 236 LYS B 241 5 6 HELIX 31 31 SER B 246 TYR B 253 1 8 HELIX 32 32 ARG B 295 ALA B 303 1 9 HELIX 33 33 MET B 317 GLN B 325 1 9 HELIX 34 34 ARG B 328 ALA B 334 1 7 HELIX 35 35 THR B 347 LEU B 354 5 8 SHEET 1 AA10 MET A 15 PHE A 17 0 SHEET 2 AA10 LEU A 44 VAL A 47 1 O LEU A 44 N MET A 15 SHEET 3 AA10 PHE A 267 THR A 270 -1 O PHE A 267 N VAL A 47 SHEET 4 AA10 TYR A 195 GLY A 203 -1 O SER A 196 N THR A 270 SHEET 5 AA10 ASN A 284 PHE A 291 -1 O CYS A 285 N HIS A 201 SHEET 6 AA10 TYR A 175 GLY A 179 -1 O TYR A 175 N SER A 288 SHEET 7 AA10 ILE A 131 ASN A 137 -1 O GLY A 133 N PHE A 178 SHEET 8 AA10 ILE A 71 GLN A 78 -1 O ILE A 71 N TYR A 132 SHEET 9 AA10 LEU A 81 GLN A 88 -1 O LEU A 81 N GLN A 78 SHEET 10 AA10 THR A 243 ILE A 245 -1 O LEU A 244 N PHE A 82 SHEET 1 AB 2 VAL A 66 ILE A 67 0 SHEET 2 AB 2 MET A 92 THR A 93 -1 O MET A 92 N ILE A 67 SHEET 1 AC 4 SER A 184 HIS A 188 0 SHEET 2 AC 4 TYR A 275 ASN A 280 -1 O HIS A 276 N HIS A 188 SHEET 3 AC 4 LYS A 206 VAL A 211 -1 O SER A 207 N PHE A 279 SHEET 4 AC 4 ASP A 258 GLN A 262 -1 O ASP A 258 N SER A 210 SHEET 1 BA10 MET B 15 PHE B 17 0 SHEET 2 BA10 LEU B 44 VAL B 47 1 O LEU B 44 N MET B 15 SHEET 3 BA10 PHE B 267 THR B 270 -1 O PHE B 267 N VAL B 47 SHEET 4 BA10 TYR B 195 GLY B 203 -1 O SER B 196 N THR B 270 SHEET 5 BA10 ASN B 284 PHE B 291 -1 O CYS B 285 N HIS B 201 SHEET 6 BA10 TYR B 175 GLY B 179 -1 O TYR B 175 N SER B 288 SHEET 7 BA10 ILE B 131 ASN B 137 -1 O GLY B 133 N PHE B 178 SHEET 8 BA10 ILE B 71 GLN B 78 -1 O ILE B 71 N TYR B 132 SHEET 9 BA10 LEU B 81 GLN B 88 -1 O LEU B 81 N GLN B 78 SHEET 10 BA10 THR B 243 ILE B 245 -1 O LEU B 244 N PHE B 82 SHEET 1 BB 2 VAL B 66 ILE B 67 0 SHEET 2 BB 2 MET B 92 THR B 93 -1 O MET B 92 N ILE B 67 SHEET 1 BC 4 SER B 184 HIS B 188 0 SHEET 2 BC 4 TYR B 275 ASN B 280 -1 O HIS B 276 N HIS B 188 SHEET 3 BC 4 LYS B 206 VAL B 211 -1 O SER B 207 N PHE B 279 SHEET 4 BC 4 ASP B 258 GLN B 262 -1 O ASP B 258 N SER B 210 LINK C VAL C 35 N M3L C 36 1555 1555 1.33 LINK C M3L C 36 N LYS C 37 1555 1555 1.33 LINK C VAL D 35 N M3L D 36 1555 1555 1.33 LINK C M3L D 36 N LYS D 37 1555 1555 1.33 LINK NE2 HIS A 188 NI NI A1356 1555 1555 2.32 LINK OE2 GLU A 190 NI NI A1356 1555 1555 2.21 LINK SG CYS A 234 ZN ZN A1357 1555 1555 2.34 LINK NE2 HIS A 240 ZN ZN A1357 1555 1555 2.26 LINK NE2 HIS A 276 NI NI A1356 1555 1555 2.24 LINK SG CYS A 306 ZN ZN A1357 1555 1555 2.25 LINK SG CYS A 308 ZN ZN A1357 1555 1555 2.36 LINK NI NI A1356 O1 2HG A1359 1555 1555 2.29 LINK NI NI A1356 O3 2HG A1359 1555 1555 2.26 LINK NI NI A1356 O HOH A2168 1555 1555 2.31 LINK NE2 HIS B 188 NI NI B1356 1555 1555 2.32 LINK OE2 GLU B 190 NI NI B1356 1555 1555 2.19 LINK SG CYS B 234 ZN ZN B1357 1555 1555 2.30 LINK NE2 HIS B 240 ZN ZN B1357 1555 1555 2.28 LINK NE2 HIS B 276 NI NI B1356 1555 1555 2.12 LINK SG CYS B 306 ZN ZN B1357 1555 1555 2.32 LINK SG CYS B 308 ZN ZN B1357 1555 1555 2.35 LINK NI NI B1356 O1 2HG B1358 1555 1555 2.32 LINK NI NI B1356 O3 2HG B1358 1555 1555 2.30 LINK NI NI B1356 O HOH B2178 1555 1555 2.17 SITE 1 AC1 5 HIS A 188 GLU A 190 HIS A 276 2HG A1359 SITE 2 AC1 5 HOH A2168 SITE 1 AC2 4 CYS A 234 HIS A 240 CYS A 306 CYS A 308 SITE 1 AC3 5 TYR A 59 ARG A 98 PHE A 202 HOH A2293 SITE 2 AC3 5 ARG B 95 SITE 1 AC4 15 TYR A 132 PHE A 185 HIS A 188 GLU A 190 SITE 2 AC4 15 SER A 196 ASN A 198 LYS A 206 TRP A 208 SITE 3 AC4 15 HIS A 276 SER A 288 NI A1356 HOH A2168 SITE 4 AC4 15 HOH A2295 HOH A2296 M3L C 36 SITE 1 AC5 5 HIS B 188 GLU B 190 HIS B 276 2HG B1358 SITE 2 AC5 5 HOH B2178 SITE 1 AC6 4 CYS B 234 HIS B 240 CYS B 306 CYS B 308 SITE 1 AC7 15 TYR B 132 TYR B 177 PHE B 185 HIS B 188 SITE 2 AC7 15 GLU B 190 SER B 196 ASN B 198 LYS B 206 SITE 3 AC7 15 TRP B 208 HIS B 276 SER B 288 NI B1356 SITE 4 AC7 15 HOH B2178 HOH B2297 M3L D 36 CRYST1 101.291 149.668 57.319 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009873 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017446 0.00000