HEADER TRANSFERASE 30-MAR-11 2YBX TITLE CRYSTAL STRUCTURE OF HUMAN PHOSPHATIDYLINOSITOL-5-PHOSPHATE 4-KINASE TITLE 2 TYPE-2 ALPHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL-5-PHOSPHATE 4-KINASE TYPE-2 ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 35-405; COMPND 5 SYNONYM: 1-PHOSPHATIDYLINOSITOL-5-PHOSPHATE 4-KINASE 2-ALPHA, COMPND 6 DIPHOSPHOINOSITIDE KINASE 2-ALPHA, PIP5KIII, PHOSPHATIDYLINOSITOL-5- COMPND 7 PHOSPHATE 4-KINASE TYPE II ALPHA, PI(5)P 4-KINASE TYPE II ALPHA, COMPND 8 PIP4KII-ALPHA, PTDINS(4)P-5-KINASE B ISOFORM, PTDINS(4)P-5-KINASE C COMPND 9 ISOFORM, PTDINS(5)P-4-KINASE ISOFORM 2-ALPHA; COMPND 10 EC: 2.7.1.149; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: PHOSPHORYL-ASPARTATE INTERMEDIATE IN POSITION 359 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3 PRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 11 OTHER_DETAILS: MAMMALIAN GENE COLLECTION (MGC) KEYWDS TRANSFERASE, KINASE, SIGNALLING EXPDTA X-RAY DIFFRACTION AUTHOR L.TRESAUGUES,M.MOCHE,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA,R.COLLINS, AUTHOR 2 A.M.EDWARDS,T.EKBLAD,S.FLODIN,S.GRASLUND,T.KARLBERG,T.KOTENYOVA, AUTHOR 3 E.KOUZNETSOVA,T.NYMAN,C.PERSSON,H.SCHULER,M.I.SIPONEN,A.G.THORSELL, AUTHOR 4 E.WAHLBERG,J.WEIGELT,P.NORDLUND REVDAT 2 20-DEC-23 2YBX 1 REMARK LINK REVDAT 1 25-JAN-12 2YBX 0 JRNL AUTH L.TRESAUGUES,M.MOCHE,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA, JRNL AUTH 2 R.COLLINS,A.M.EDWARDS,T.EKBLAD,S.FLODIN,S.GRASLUND, JRNL AUTH 3 T.KARLBERG,T.KOTENYOVA,E.KOUZNETSOVA,T.NYMAN,C.PERSSON, JRNL AUTH 4 H.SCHULER,M.I.SIPONEN,A.G.THORSELL,E.WAHLBERG,J.WEIGELT, JRNL AUTH 5 P.NORDLUND JRNL TITL CRYSTAL STRUCTURE OF HUMAN PHOSPHATIDYLINOSITOL-5-PHOSPHATE JRNL TITL 2 4-KINASE TYPE-2 ALPHA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 28285 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1444 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.94 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2916 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2339 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2769 REMARK 3 BIN R VALUE (WORKING SET) : 0.2315 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.04 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5210 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 15.57920 REMARK 3 B22 (A**2) : -21.34900 REMARK 3 B33 (A**2) : 5.76970 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.05070 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.314 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.401 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.259 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.428 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.267 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.897 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.866 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5362 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7245 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2508 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 148 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 759 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5362 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 677 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6124 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.96 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.21 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY. REMARK 4 REMARK 4 2YBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1290047868. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28302 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 28.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1BO1 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM FORMATE, 16% PEG3350, REMARK 280 2 MM BENZYL(1,3,5)TRIPHOSPHATE, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.25400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 SER A 19 REMARK 465 SER A 20 REMARK 465 GLY A 21 REMARK 465 VAL A 22 REMARK 465 ASP A 23 REMARK 465 LEU A 24 REMARK 465 GLY A 25 REMARK 465 THR A 26 REMARK 465 GLU A 27 REMARK 465 SER A 126 REMARK 465 GLN A 127 REMARK 465 ALA A 128 REMARK 465 ARG A 129 REMARK 465 SER A 130 REMARK 465 GLU A 294 REMARK 465 GLU A 295 REMARK 465 ASN A 296 REMARK 465 ASP A 297 REMARK 465 GLY A 298 REMARK 465 GLU A 299 REMARK 465 GLU A 300 REMARK 465 GLU A 301 REMARK 465 GLY A 302 REMARK 465 GLU A 303 REMARK 465 SER A 304 REMARK 465 ASP A 305 REMARK 465 GLY A 306 REMARK 465 THR A 307 REMARK 465 HIS A 308 REMARK 465 PRO A 309 REMARK 465 VAL A 310 REMARK 465 GLY A 311 REMARK 465 THR A 312 REMARK 465 PRO A 313 REMARK 465 PRO A 314 REMARK 465 ASP A 315 REMARK 465 SER A 316 REMARK 465 PRO A 317 REMARK 465 GLY A 318 REMARK 465 ASN A 319 REMARK 465 THR A 320 REMARK 465 LEU A 321 REMARK 465 ASN A 322 REMARK 465 SER A 323 REMARK 465 SER A 324 REMARK 465 PRO A 325 REMARK 465 LYS A 367 REMARK 465 LYS A 368 REMARK 465 LYS A 369 REMARK 465 ALA A 370 REMARK 465 ALA A 371 REMARK 465 HIS A 372 REMARK 465 ALA A 373 REMARK 465 ALA A 374 REMARK 465 LYS A 375 REMARK 465 THR A 376 REMARK 465 VAL A 377 REMARK 465 LYS A 378 REMARK 465 HIS A 379 REMARK 465 GLY A 380 REMARK 465 ALA A 381 REMARK 465 GLY A 382 REMARK 465 ALA A 383 REMARK 465 GLU A 384 REMARK 465 ILE A 385 REMARK 465 MET B 12 REMARK 465 HIS B 13 REMARK 465 HIS B 14 REMARK 465 HIS B 15 REMARK 465 HIS B 16 REMARK 465 HIS B 17 REMARK 465 HIS B 18 REMARK 465 SER B 19 REMARK 465 SER B 20 REMARK 465 GLY B 21 REMARK 465 VAL B 22 REMARK 465 ASP B 23 REMARK 465 LEU B 24 REMARK 465 GLY B 25 REMARK 465 THR B 26 REMARK 465 GLU B 27 REMARK 465 ASN B 28 REMARK 465 GLN B 127 REMARK 465 ALA B 128 REMARK 465 ARG B 129 REMARK 465 GLU B 287 REMARK 465 GLN B 288 REMARK 465 GLU B 289 REMARK 465 GLU B 290 REMARK 465 VAL B 291 REMARK 465 GLU B 292 REMARK 465 CYS B 293 REMARK 465 GLU B 294 REMARK 465 GLU B 295 REMARK 465 ASN B 296 REMARK 465 ASP B 297 REMARK 465 GLY B 298 REMARK 465 GLU B 299 REMARK 465 GLU B 300 REMARK 465 GLU B 301 REMARK 465 GLY B 302 REMARK 465 GLU B 303 REMARK 465 SER B 304 REMARK 465 ASP B 305 REMARK 465 GLY B 306 REMARK 465 THR B 307 REMARK 465 HIS B 308 REMARK 465 PRO B 309 REMARK 465 VAL B 310 REMARK 465 GLY B 311 REMARK 465 THR B 312 REMARK 465 PRO B 313 REMARK 465 PRO B 314 REMARK 465 ASP B 315 REMARK 465 SER B 316 REMARK 465 PRO B 317 REMARK 465 GLY B 318 REMARK 465 ASN B 319 REMARK 465 THR B 320 REMARK 465 LEU B 321 REMARK 465 ASN B 322 REMARK 465 SER B 323 REMARK 465 SER B 324 REMARK 465 PRO B 325 REMARK 465 PRO B 326 REMARK 465 LEU B 327 REMARK 465 LYS B 367 REMARK 465 LYS B 368 REMARK 465 LYS B 369 REMARK 465 ALA B 370 REMARK 465 ALA B 371 REMARK 465 HIS B 372 REMARK 465 ALA B 373 REMARK 465 ALA B 374 REMARK 465 LYS B 375 REMARK 465 THR B 376 REMARK 465 VAL B 377 REMARK 465 LYS B 378 REMARK 465 HIS B 379 REMARK 465 GLY B 380 REMARK 465 ALA B 381 REMARK 465 GLY B 382 REMARK 465 ALA B 383 REMARK 465 GLU B 384 REMARK 465 ILE B 385 REMARK 465 SER B 386 REMARK 465 THR B 387 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 ASP B 125 CG OD1 OD2 REMARK 470 GLU B 150 CG CD OE1 OE2 REMARK 470 ARG B 203 CG CD NE CZ NH1 NH2 REMARK 470 SER B 215 OG REMARK 470 LYS B 224 CG CD CE NZ REMARK 470 GLU B 229 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 124 30.62 -81.81 REMARK 500 ARG A 203 -60.40 -103.16 REMARK 500 LYS A 213 -54.34 -120.14 REMARK 500 SER A 215 -121.82 43.55 REMARK 500 VAL A 217 -103.82 -160.51 REMARK 500 ALA A 218 45.87 -79.21 REMARK 500 LYS A 270 34.13 70.75 REMARK 500 ILE A 336 -63.13 -102.45 REMARK 500 CYS B 94 74.99 35.76 REMARK 500 ASP B 125 -62.05 61.19 REMARK 500 VAL B 217 144.33 177.64 REMARK 500 ALA B 218 95.57 -66.72 REMARK 500 PRO B 329 -87.13 -67.22 REMARK 500 PHD B 359 70.29 44.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1406 DBREF 2YBX A 35 405 UNP P48426 PI42A_HUMAN 35 405 DBREF 2YBX B 35 405 UNP P48426 PI42A_HUMAN 35 405 SEQADV 2YBX MET A 12 UNP P48426 EXPRESSION TAG SEQADV 2YBX HIS A 13 UNP P48426 EXPRESSION TAG SEQADV 2YBX HIS A 14 UNP P48426 EXPRESSION TAG SEQADV 2YBX HIS A 15 UNP P48426 EXPRESSION TAG SEQADV 2YBX HIS A 16 UNP P48426 EXPRESSION TAG SEQADV 2YBX HIS A 17 UNP P48426 EXPRESSION TAG SEQADV 2YBX HIS A 18 UNP P48426 EXPRESSION TAG SEQADV 2YBX SER A 19 UNP P48426 EXPRESSION TAG SEQADV 2YBX SER A 20 UNP P48426 EXPRESSION TAG SEQADV 2YBX GLY A 21 UNP P48426 EXPRESSION TAG SEQADV 2YBX VAL A 22 UNP P48426 EXPRESSION TAG SEQADV 2YBX ASP A 23 UNP P48426 EXPRESSION TAG SEQADV 2YBX LEU A 24 UNP P48426 EXPRESSION TAG SEQADV 2YBX GLY A 25 UNP P48426 EXPRESSION TAG SEQADV 2YBX THR A 26 UNP P48426 EXPRESSION TAG SEQADV 2YBX GLU A 27 UNP P48426 EXPRESSION TAG SEQADV 2YBX ASN A 28 UNP P48426 EXPRESSION TAG SEQADV 2YBX LEU A 29 UNP P48426 EXPRESSION TAG SEQADV 2YBX TYR A 30 UNP P48426 EXPRESSION TAG SEQADV 2YBX PHE A 31 UNP P48426 EXPRESSION TAG SEQADV 2YBX GLN A 32 UNP P48426 EXPRESSION TAG SEQADV 2YBX SER A 33 UNP P48426 EXPRESSION TAG SEQADV 2YBX MET A 34 UNP P48426 EXPRESSION TAG SEQADV 2YBX MET B 12 UNP P48426 EXPRESSION TAG SEQADV 2YBX HIS B 13 UNP P48426 EXPRESSION TAG SEQADV 2YBX HIS B 14 UNP P48426 EXPRESSION TAG SEQADV 2YBX HIS B 15 UNP P48426 EXPRESSION TAG SEQADV 2YBX HIS B 16 UNP P48426 EXPRESSION TAG SEQADV 2YBX HIS B 17 UNP P48426 EXPRESSION TAG SEQADV 2YBX HIS B 18 UNP P48426 EXPRESSION TAG SEQADV 2YBX SER B 19 UNP P48426 EXPRESSION TAG SEQADV 2YBX SER B 20 UNP P48426 EXPRESSION TAG SEQADV 2YBX GLY B 21 UNP P48426 EXPRESSION TAG SEQADV 2YBX VAL B 22 UNP P48426 EXPRESSION TAG SEQADV 2YBX ASP B 23 UNP P48426 EXPRESSION TAG SEQADV 2YBX LEU B 24 UNP P48426 EXPRESSION TAG SEQADV 2YBX GLY B 25 UNP P48426 EXPRESSION TAG SEQADV 2YBX THR B 26 UNP P48426 EXPRESSION TAG SEQADV 2YBX GLU B 27 UNP P48426 EXPRESSION TAG SEQADV 2YBX ASN B 28 UNP P48426 EXPRESSION TAG SEQADV 2YBX LEU B 29 UNP P48426 EXPRESSION TAG SEQADV 2YBX TYR B 30 UNP P48426 EXPRESSION TAG SEQADV 2YBX PHE B 31 UNP P48426 EXPRESSION TAG SEQADV 2YBX GLN B 32 UNP P48426 EXPRESSION TAG SEQADV 2YBX SER B 33 UNP P48426 EXPRESSION TAG SEQADV 2YBX MET B 34 UNP P48426 EXPRESSION TAG SEQRES 1 A 394 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 394 GLY THR GLU ASN LEU TYR PHE GLN SER MET ASP PRO LEU SEQRES 3 A 394 LEU SER VAL LEU MET TRP GLY VAL ASN HIS SER ILE ASN SEQRES 4 A 394 GLU LEU SER HIS VAL GLN ILE PRO VAL MET LEU MET PRO SEQRES 5 A 394 ASP ASP PHE LYS ALA TYR SER LYS ILE LYS VAL ASP ASN SEQRES 6 A 394 HIS LEU PHE ASN LYS GLU ASN MET PRO SER HIS PHE LYS SEQRES 7 A 394 PHE LYS GLU TYR CYS PRO MET VAL PHE ARG ASN LEU ARG SEQRES 8 A 394 GLU ARG PHE GLY ILE ASP ASP GLN ASP PHE GLN ASN SER SEQRES 9 A 394 LEU THR ARG SER ALA PRO LEU PRO ASN ASP SER GLN ALA SEQRES 10 A 394 ARG SER GLY ALA ARG PHE HIS THR SER TYR ASP LYS ARG SEQRES 11 A 394 TYR ILE ILE LYS THR ILE THR SER GLU ASP VAL ALA GLU SEQRES 12 A 394 MET HIS ASN ILE LEU LYS LYS TYR HIS GLN TYR ILE VAL SEQRES 13 A 394 GLU CYS HIS GLY ILE THR LEU LEU PRO GLN PHE LEU GLY SEQRES 14 A 394 MET TYR ARG LEU ASN VAL ASP GLY VAL GLU ILE TYR VAL SEQRES 15 A 394 ILE VAL THR ARG ASN VAL PHE SER HIS ARG LEU SER VAL SEQRES 16 A 394 TYR ARG LYS TYR ASP LEU LYS GLY SER THR VAL ALA ARG SEQRES 17 A 394 GLU ALA SER ASP LYS GLU LYS ALA LYS GLU LEU PRO THR SEQRES 18 A 394 LEU LYS ASP ASN ASP PHE ILE ASN GLU GLY GLN LYS ILE SEQRES 19 A 394 TYR ILE ASP ASP ASN ASN LYS LYS VAL PHE LEU GLU LYS SEQRES 20 A 394 LEU LYS LYS ASP VAL GLU PHE LEU ALA GLN LEU LYS LEU SEQRES 21 A 394 MET ASP TYR SER LEU LEU VAL GLY ILE HIS ASP VAL GLU SEQRES 22 A 394 ARG ALA GLU GLN GLU GLU VAL GLU CYS GLU GLU ASN ASP SEQRES 23 A 394 GLY GLU GLU GLU GLY GLU SER ASP GLY THR HIS PRO VAL SEQRES 24 A 394 GLY THR PRO PRO ASP SER PRO GLY ASN THR LEU ASN SER SEQRES 25 A 394 SER PRO PRO LEU ALA PRO GLY GLU PHE ASP PRO ASN ILE SEQRES 26 A 394 ASP VAL TYR GLY ILE LYS CYS HIS GLU ASN SER PRO ARG SEQRES 27 A 394 LYS GLU VAL TYR PHE MET ALA ILE ILE PHD ILE LEU THR SEQRES 28 A 394 HIS TYR ASP ALA LYS LYS LYS ALA ALA HIS ALA ALA LYS SEQRES 29 A 394 THR VAL LYS HIS GLY ALA GLY ALA GLU ILE SER THR VAL SEQRES 30 A 394 ASN PRO GLU GLN TYR SER LYS ARG PHE LEU ASP PHE ILE SEQRES 31 A 394 GLY HIS ILE LEU SEQRES 1 B 394 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 394 GLY THR GLU ASN LEU TYR PHE GLN SER MET ASP PRO LEU SEQRES 3 B 394 LEU SER VAL LEU MET TRP GLY VAL ASN HIS SER ILE ASN SEQRES 4 B 394 GLU LEU SER HIS VAL GLN ILE PRO VAL MET LEU MET PRO SEQRES 5 B 394 ASP ASP PHE LYS ALA TYR SER LYS ILE LYS VAL ASP ASN SEQRES 6 B 394 HIS LEU PHE ASN LYS GLU ASN MET PRO SER HIS PHE LYS SEQRES 7 B 394 PHE LYS GLU TYR CYS PRO MET VAL PHE ARG ASN LEU ARG SEQRES 8 B 394 GLU ARG PHE GLY ILE ASP ASP GLN ASP PHE GLN ASN SER SEQRES 9 B 394 LEU THR ARG SER ALA PRO LEU PRO ASN ASP SER GLN ALA SEQRES 10 B 394 ARG SER GLY ALA ARG PHE HIS THR SER TYR ASP LYS ARG SEQRES 11 B 394 TYR ILE ILE LYS THR ILE THR SER GLU ASP VAL ALA GLU SEQRES 12 B 394 MET HIS ASN ILE LEU LYS LYS TYR HIS GLN TYR ILE VAL SEQRES 13 B 394 GLU CYS HIS GLY ILE THR LEU LEU PRO GLN PHE LEU GLY SEQRES 14 B 394 MET TYR ARG LEU ASN VAL ASP GLY VAL GLU ILE TYR VAL SEQRES 15 B 394 ILE VAL THR ARG ASN VAL PHE SER HIS ARG LEU SER VAL SEQRES 16 B 394 TYR ARG LYS TYR ASP LEU LYS GLY SER THR VAL ALA ARG SEQRES 17 B 394 GLU ALA SER ASP LYS GLU LYS ALA LYS GLU LEU PRO THR SEQRES 18 B 394 LEU LYS ASP ASN ASP PHE ILE ASN GLU GLY GLN LYS ILE SEQRES 19 B 394 TYR ILE ASP ASP ASN ASN LYS LYS VAL PHE LEU GLU LYS SEQRES 20 B 394 LEU LYS LYS ASP VAL GLU PHE LEU ALA GLN LEU LYS LEU SEQRES 21 B 394 MET ASP TYR SER LEU LEU VAL GLY ILE HIS ASP VAL GLU SEQRES 22 B 394 ARG ALA GLU GLN GLU GLU VAL GLU CYS GLU GLU ASN ASP SEQRES 23 B 394 GLY GLU GLU GLU GLY GLU SER ASP GLY THR HIS PRO VAL SEQRES 24 B 394 GLY THR PRO PRO ASP SER PRO GLY ASN THR LEU ASN SER SEQRES 25 B 394 SER PRO PRO LEU ALA PRO GLY GLU PHE ASP PRO ASN ILE SEQRES 26 B 394 ASP VAL TYR GLY ILE LYS CYS HIS GLU ASN SER PRO ARG SEQRES 27 B 394 LYS GLU VAL TYR PHE MET ALA ILE ILE PHD ILE LEU THR SEQRES 28 B 394 HIS TYR ASP ALA LYS LYS LYS ALA ALA HIS ALA ALA LYS SEQRES 29 B 394 THR VAL LYS HIS GLY ALA GLY ALA GLU ILE SER THR VAL SEQRES 30 B 394 ASN PRO GLU GLN TYR SER LYS ARG PHE LEU ASP PHE ILE SEQRES 31 B 394 GLY HIS ILE LEU MODRES 2YBX PHD A 359 ASP ASPARTYL PHOSPHATE MODRES 2YBX PHD B 359 ASP ASPARTYL PHOSPHATE HET PHD A 359 12 HET PHD B 359 12 HET PO4 A1406 5 HETNAM PHD ASPARTYL PHOSPHATE HETNAM PO4 PHOSPHATE ION FORMUL 1 PHD 2(C4 H8 N O7 P) FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *121(H2 O) HELIX 1 1 ASP A 35 SER A 53 1 19 HELIX 2 2 MET A 62 LYS A 67 5 6 HELIX 3 3 CYS A 94 PHE A 105 1 12 HELIX 4 4 ASP A 108 ARG A 118 1 11 HELIX 5 5 THR A 148 CYS A 169 1 22 HELIX 6 6 SER A 222 ALA A 227 1 6 HELIX 7 7 LYS A 234 GLU A 241 1 8 HELIX 8 8 ASP A 248 LEU A 269 1 22 HELIX 9 9 VAL A 283 GLU A 292 1 10 HELIX 10 10 ASN A 389 LEU A 405 1 17 HELIX 11 11 ASP B 35 LEU B 52 1 18 HELIX 12 12 SER B 53 VAL B 55 5 3 HELIX 13 13 MET B 62 LYS B 67 5 6 HELIX 14 14 CYS B 94 PHE B 105 1 12 HELIX 15 15 ASP B 108 ARG B 118 1 11 HELIX 16 16 THR B 148 CYS B 169 1 22 HELIX 17 17 SER B 222 LYS B 228 1 7 HELIX 18 18 ASP B 235 GLU B 241 1 7 HELIX 19 19 ASP B 248 LEU B 269 1 22 HELIX 20 20 ASN B 389 LEU B 405 1 17 SHEET 1 AA14 LEU A 122 PRO A 123 0 SHEET 2 AA14 PHE A 134 THR A 136 -1 O THR A 136 N LEU A 122 SHEET 3 AA14 TYR A 142 ILE A 147 -1 O ILE A 144 N HIS A 135 SHEET 4 AA14 VAL A 189 ARG A 197 -1 O TYR A 192 N ILE A 147 SHEET 5 AA14 PHE A 178 VAL A 186 -1 N LEU A 179 O VAL A 195 SHEET 6 AA14 HIS A 87 TYR A 93 -1 O LYS A 89 N ASN A 185 SHEET 7 AA14 TYR A 69 HIS A 77 -1 O SER A 70 N GLU A 92 SHEET 8 AA14 TYR B 69 HIS B 77 -1 O TYR B 69 N HIS A 77 SHEET 9 AA14 HIS B 87 TYR B 93 -1 O PHE B 88 N VAL B 74 SHEET 10 AA14 PHE B 178 VAL B 186 -1 O MET B 181 N TYR B 93 SHEET 11 AA14 VAL B 189 ARG B 197 -1 O VAL B 189 N VAL B 186 SHEET 12 AA14 TYR B 142 ILE B 147 -1 O ILE B 143 N THR B 196 SHEET 13 AA14 PHE B 134 THR B 136 -1 O HIS B 135 N ILE B 144 SHEET 14 AA14 LEU B 122 PRO B 123 -1 O LEU B 122 N THR B 136 SHEET 1 AB 5 THR A 232 LEU A 233 0 SHEET 2 AB 5 ARG A 208 LEU A 212 1 O LYS A 209 N LEU A 233 SHEET 3 AB 5 SER A 275 ASP A 282 -1 O LEU A 276 N LEU A 212 SHEET 4 AB 5 GLU A 351 ILE A 358 -1 O VAL A 352 N HIS A 281 SHEET 5 AB 5 GLY A 340 LYS A 342 -1 O ILE A 341 N TYR A 353 SHEET 1 AC 2 LEU A 271 MET A 272 0 SHEET 2 AC 2 THR A 362 HIS A 363 -1 O THR A 362 N MET A 272 SHEET 1 BA 5 THR B 232 LYS B 234 0 SHEET 2 BA 5 ARG B 208 LEU B 212 1 O LYS B 209 N LEU B 233 SHEET 3 BA 5 SER B 275 ASP B 282 -1 O LEU B 276 N LEU B 212 SHEET 4 BA 5 GLU B 351 ILE B 358 -1 O VAL B 352 N HIS B 281 SHEET 5 BA 5 GLY B 340 LYS B 342 -1 O ILE B 341 N TYR B 353 LINK C ILE A 358 N PHD A 359 1555 1555 1.36 LINK C PHD A 359 N ILE A 360 1555 1555 1.34 LINK C ILE B 358 N PHD B 359 1555 1555 1.35 LINK C PHD B 359 N ILE B 360 1555 1555 1.36 CISPEP 1 THR A 216 VAL A 217 0 -1.45 SITE 1 AC1 4 LYS A 213 ARG A 219 LYS A 234 PHD A 359 CRYST1 44.040 98.508 104.879 90.00 93.43 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022707 0.000000 0.001361 0.00000 SCALE2 0.000000 0.010151 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009552 0.00000 MTRIX1 1 -0.999880 0.010340 -0.011750 -28.93359 1 MTRIX2 1 0.005900 0.944510 0.328440 -6.85638 1 MTRIX3 1 0.014500 0.328330 -0.944450 41.15516 1