HEADER TRANSPORT PROTEIN 11-MAR-11 2YC4 TITLE INTRAFLAGELLAR TRANSPORT COMPLEX 25-27 FROM CHLAMYDOMONAS COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTRAFLAGELLAR TRANSPORT PROTEIN 25; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-135; COMPND 5 SYNONYM: IFT25; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SMALL RAB-RELATED GTPASE; COMPND 9 CHAIN: C, D; COMPND 10 SYNONYM: IFT27; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_COMMON: GREEN ALGAE; SOURCE 4 ORGANISM_TAXID: 3055; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 10 ORGANISM_COMMON: GREEN ALGAE; SOURCE 11 ORGANISM_TAXID: 3055; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TRANSPORT PROTEIN, CILIUM, IFT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.BHOGARAJU,M.TASCHNER,E.LORENTZEN REVDAT 4 20-DEC-23 2YC4 1 REMARK LINK REVDAT 3 01-JUN-11 2YC4 1 JRNL REVDAT 2 11-MAY-11 2YC4 1 JRNL REVDAT 1 23-MAR-11 2YC4 0 JRNL AUTH S.BHOGARAJU,M.TASCHNER,M.MORAWETZ,C.BASQUIN,E.LORENTZEN JRNL TITL CRYSTAL STRUCTURE OF THE INTRAFLAGELLAR TRANSPORT COMPLEX JRNL TITL 2 25/27. JRNL REF EMBO J. V. 30 1907 2011 JRNL REFN ISSN 0261-4189 JRNL PMID 21505417 JRNL DOI 10.1038/EMBOJ.2011.110 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 15717 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.316 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 787 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8548 - 5.0862 1.00 2554 135 0.2151 0.2926 REMARK 3 2 5.0862 - 4.0377 1.00 2480 131 0.1774 0.2485 REMARK 3 3 4.0377 - 3.5275 1.00 2485 131 0.2105 0.3263 REMARK 3 4 3.5275 - 3.2051 1.00 2482 131 0.2480 0.3436 REMARK 3 5 3.2051 - 2.9754 1.00 2450 129 0.2861 0.3710 REMARK 3 6 2.9754 - 2.8000 1.00 2479 130 0.3145 0.4034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 39.81 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.26980 REMARK 3 B22 (A**2) : 0.83460 REMARK 3 B33 (A**2) : -2.10450 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.30440 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4717 REMARK 3 ANGLE : 1.369 6425 REMARK 3 CHIRALITY : 0.082 761 REMARK 3 PLANARITY : 0.006 828 REMARK 3 DIHEDRAL : 16.594 1626 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YC4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1290047661. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.973 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15717 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1TVG REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25%PEG 3350 50MM MES PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.15000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 ARG A 94 REMARK 465 GLY A 95 REMARK 465 ASP A 96 REMARK 465 ARG A 97 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 ALA B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ASP B 96 REMARK 465 ARG B 97 REMARK 465 ASP B 135 REMARK 465 GLY C -3 REMARK 465 ALA C -2 REMARK 465 ALA C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 VAL C 2 REMARK 465 LYS C 3 REMARK 465 LYS C 4 REMARK 465 GLU C 5 REMARK 465 VAL C 6 REMARK 465 LYS C 39 REMARK 465 GLY C 40 REMARK 465 SER C 41 REMARK 465 LYS C 42 REMARK 465 PHE C 43 REMARK 465 LEU C 44 REMARK 465 LYS C 45 REMARK 465 ASP C 46 REMARK 465 TYR C 47 REMARK 465 ALA C 48 REMARK 465 MET C 49 REMARK 465 THR C 50 REMARK 465 SER C 51 REMARK 465 GLY C 52 REMARK 465 VAL C 53 REMARK 465 GLU C 54 REMARK 465 VAL C 55 REMARK 465 THR C 138 REMARK 465 ASP C 139 REMARK 465 LEU C 140 REMARK 465 ALA C 168 REMARK 465 GLY D -3 REMARK 465 ALA D -2 REMARK 465 ALA D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 VAL D 2 REMARK 465 LYS D 3 REMARK 465 LYS D 4 REMARK 465 GLU D 5 REMARK 465 VAL D 6 REMARK 465 LYS D 7 REMARK 465 LYS D 42 REMARK 465 PHE D 43 REMARK 465 LEU D 44 REMARK 465 LYS D 45 REMARK 465 ASP D 46 REMARK 465 TYR D 47 REMARK 465 ALA D 48 REMARK 465 MET D 49 REMARK 465 THR D 50 REMARK 465 SER D 51 REMARK 465 GLY D 52 REMARK 465 VAL D 53 REMARK 465 GLU D 54 REMARK 465 VAL D 55 REMARK 465 VAL D 56 REMARK 465 ALA D 77 REMARK 465 GLY D 78 REMARK 465 PRO D 142 REMARK 465 GLN D 143 REMARK 465 ARG D 144 REMARK 465 HIS D 145 REMARK 465 TYR D 204 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 MET A 15 CG SD CE REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 LEU A 65 CG CD1 CD2 REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 135 CG OD1 OD2 REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 MET B 15 CG SD CE REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 ARG B 56 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 59 CG CD CE NZ REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 ASP B 81 CG OD1 OD2 REMARK 470 GLN B 82 CG CD OE1 NE2 REMARK 470 GLU B 84 CG CD OE1 OE2 REMARK 470 LYS B 85 CG CD CE NZ REMARK 470 GLU B 90 CG CD OE1 OE2 REMARK 470 ASN B 93 CG OD1 ND2 REMARK 470 ARG B 94 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 98 CG CD1 CD2 REMARK 470 GLN B 104 CG CD OE1 NE2 REMARK 470 LYS C 7 CG CD CE NZ REMARK 470 MET C 35 CG SD CE REMARK 470 GLN C 88 CG CD OE1 NE2 REMARK 470 ARG C 125 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 137 CG CD CE NZ REMARK 470 GLN C 143 CG CD OE1 NE2 REMARK 470 ARG C 144 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 148 CG CD NE CZ NH1 NH2 REMARK 470 MET C 151 CG SD CE REMARK 470 ASP C 162 CG OD1 OD2 REMARK 470 ASN C 169 CG OD1 ND2 REMARK 470 LYS C 173 CG CD CE NZ REMARK 470 ARG C 202 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 203 CG OD1 ND2 REMARK 470 TYR C 204 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO D 8 CG CD REMARK 470 ILE D 9 CG1 CG2 CD1 REMARK 470 ASP D 10 CG OD1 OD2 REMARK 470 LEU D 32 CG CD1 CD2 REMARK 470 LYS D 39 CG CD CE NZ REMARK 470 LEU D 81 CG CD1 CD2 REMARK 470 ARG D 125 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 126 CG CD OE1 OE2 REMARK 470 ASP D 139 CG OD1 OD2 REMARK 470 LEU D 140 CG CD1 CD2 REMARK 470 ASN D 169 CG OD1 ND2 REMARK 470 LYS D 173 CG CD CE NZ REMARK 470 ASN D 203 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE C 9 O HOH C 2001 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 171 C - N - CA ANGL. DEV. = 16.9 DEGREES REMARK 500 PRO C 171 C - N - CD ANGL. DEV. = -16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 15 47.41 -149.68 REMARK 500 ASN A 27 1.71 -64.21 REMARK 500 MET A 42 -170.43 -59.79 REMARK 500 GLU A 88 128.52 -170.57 REMARK 500 LEU A 91 -168.74 -113.27 REMARK 500 ASN B 9 38.00 -96.92 REMARK 500 MET B 15 43.92 -150.83 REMARK 500 CYS B 18 148.29 -170.04 REMARK 500 PHE B 23 63.89 -151.41 REMARK 500 ASN B 27 1.72 -65.00 REMARK 500 MET B 42 -170.91 -60.13 REMARK 500 PHE B 87 -168.04 -160.72 REMARK 500 LEU B 91 -168.43 -115.00 REMARK 500 ASN B 93 166.15 -28.23 REMARK 500 ARG B 94 -143.12 120.42 REMARK 500 ILE C 9 7.90 81.39 REMARK 500 THR C 26 30.89 -89.61 REMARK 500 THR C 37 -62.73 -106.59 REMARK 500 PRO C 63 127.48 -39.70 REMARK 500 TYR C 89 -15.09 73.32 REMARK 500 TRP C 90 136.79 -38.74 REMARK 500 PRO C 142 137.37 -31.56 REMARK 500 VAL C 166 35.63 -77.03 REMARK 500 ILE D 9 -172.48 -68.15 REMARK 500 THR D 26 31.10 -90.63 REMARK 500 TYR D 89 -11.47 66.00 REMARK 500 TRP D 90 134.89 -38.33 REMARK 500 ASP D 139 71.48 -65.18 REMARK 500 LEU D 140 136.04 -177.76 REMARK 500 ASP D 150 -82.95 8.78 REMARK 500 ASN D 169 32.71 131.78 REMARK 500 PRO D 170 57.58 -102.48 REMARK 500 PRO D 171 107.66 -55.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU D 149 ASP D 150 137.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 27 O REMARK 620 2 ASP A 30 OD1 80.6 REMARK 620 3 LYS A 32 O 137.3 82.1 REMARK 620 4 THR A 35 O 92.1 161.2 114.1 REMARK 620 5 THR A 35 OG1 96.2 74.3 116.0 89.5 REMARK 620 6 ASN A 127 O 61.6 110.8 89.2 80.0 154.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 27 O REMARK 620 2 ASP B 30 OD1 87.5 REMARK 620 3 LYS B 32 O 147.9 90.9 REMARK 620 4 THR B 35 O 86.2 156.3 106.4 REMARK 620 5 THR B 35 OG1 95.5 77.6 115.5 80.3 REMARK 620 6 ASN B 127 O 61.7 121.7 92.7 74.6 146.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 103 O REMARK 620 2 HIS C 145 O 141.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 1204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YC2 RELATED DB: PDB REMARK 900 INTRAFLAGELLAR TRANSPORT COMPLEX 25-27 FROM CHLAMYDOMONAS REMARK 999 REMARK 999 SEQUENCE REMARK 999 C-TERMINAL TRUNCATION, ONLY RESIDUES 1-135 IN CONSTRUCT DBREF 2YC4 A 1 135 UNP B8LIX8 B8LIX8_CHLRE 1 135 DBREF 2YC4 B 1 135 UNP B8LIX8 B8LIX8_CHLRE 1 135 DBREF 2YC4 C 1 204 UNP A8HN58 A8HN58_CHLRE 1 204 DBREF 2YC4 D 1 204 UNP A8HN58 A8HN58_CHLRE 1 204 SEQADV 2YC4 GLY A -3 UNP B8LIX8 EXPRESSION TAG SEQADV 2YC4 ALA A -2 UNP B8LIX8 EXPRESSION TAG SEQADV 2YC4 ALA A -1 UNP B8LIX8 EXPRESSION TAG SEQADV 2YC4 SER A 0 UNP B8LIX8 EXPRESSION TAG SEQADV 2YC4 GLY B -3 UNP B8LIX8 EXPRESSION TAG SEQADV 2YC4 ALA B -2 UNP B8LIX8 EXPRESSION TAG SEQADV 2YC4 ALA B -1 UNP B8LIX8 EXPRESSION TAG SEQADV 2YC4 SER B 0 UNP B8LIX8 EXPRESSION TAG SEQADV 2YC4 GLY C -3 UNP A8HN58 EXPRESSION TAG SEQADV 2YC4 ALA C -2 UNP A8HN58 EXPRESSION TAG SEQADV 2YC4 ALA C -1 UNP A8HN58 EXPRESSION TAG SEQADV 2YC4 SER C 0 UNP A8HN58 EXPRESSION TAG SEQADV 2YC4 GLY D -3 UNP A8HN58 EXPRESSION TAG SEQADV 2YC4 ALA D -2 UNP A8HN58 EXPRESSION TAG SEQADV 2YC4 ALA D -1 UNP A8HN58 EXPRESSION TAG SEQADV 2YC4 SER D 0 UNP A8HN58 EXPRESSION TAG SEQRES 1 A 139 GLY ALA ALA SER MET LYS ASP TYR ALA ARG GLU GLU ASN SEQRES 2 A 139 GLY GLY LEU VAL VAL MET ALA SER CYS SER ASP GLU ARG SEQRES 3 A 139 PHE PRO PRO GLU ASN MET LEU ASP GLY LYS ASP ASN THR SEQRES 4 A 139 PHE TRP VAL THR THR GLY MET PHE PRO GLN GLU PHE VAL SEQRES 5 A 139 LEU ARG LEU GLU SER CYS ILE ARG VAL SER LYS ILE THR SEQRES 6 A 139 THR LEU SER LEU ASN VAL ARG LYS LEU ALA VAL GLU LYS SEQRES 7 A 139 CYS ASP GLN ASP LYS PRO ASP GLN PHE GLU LYS VAL PHE SEQRES 8 A 139 GLU VAL GLU LEU ALA ASN ARG GLY ASP ARG LEU GLN THR SEQRES 9 A 139 GLU VAL HIS GLN VAL ASN ILE ARG ALA LYS TYR LEU LYS SEQRES 10 A 139 PHE ILE LEU LEU GLN GLY HIS GLY GLU PHE ALA THR VAL SEQRES 11 A 139 ASN ARG VAL SER VAL VAL GLY GLY ASP SEQRES 1 B 139 GLY ALA ALA SER MET LYS ASP TYR ALA ARG GLU GLU ASN SEQRES 2 B 139 GLY GLY LEU VAL VAL MET ALA SER CYS SER ASP GLU ARG SEQRES 3 B 139 PHE PRO PRO GLU ASN MET LEU ASP GLY LYS ASP ASN THR SEQRES 4 B 139 PHE TRP VAL THR THR GLY MET PHE PRO GLN GLU PHE VAL SEQRES 5 B 139 LEU ARG LEU GLU SER CYS ILE ARG VAL SER LYS ILE THR SEQRES 6 B 139 THR LEU SER LEU ASN VAL ARG LYS LEU ALA VAL GLU LYS SEQRES 7 B 139 CYS ASP GLN ASP LYS PRO ASP GLN PHE GLU LYS VAL PHE SEQRES 8 B 139 GLU VAL GLU LEU ALA ASN ARG GLY ASP ARG LEU GLN THR SEQRES 9 B 139 GLU VAL HIS GLN VAL ASN ILE ARG ALA LYS TYR LEU LYS SEQRES 10 B 139 PHE ILE LEU LEU GLN GLY HIS GLY GLU PHE ALA THR VAL SEQRES 11 B 139 ASN ARG VAL SER VAL VAL GLY GLY ASP SEQRES 1 C 208 GLY ALA ALA SER MET VAL LYS LYS GLU VAL LYS PRO ILE SEQRES 2 C 208 ASP ILE THR ALA THR LEU ARG CYS LYS VAL ALA VAL VAL SEQRES 3 C 208 GLY GLU ALA THR VAL GLY LYS SER ALA LEU ILE SER MET SEQRES 4 C 208 PHE THR SER LYS GLY SER LYS PHE LEU LYS ASP TYR ALA SEQRES 5 C 208 MET THR SER GLY VAL GLU VAL VAL VAL ALA PRO VAL THR SEQRES 6 C 208 ILE PRO ASP THR THR VAL SER VAL GLU LEU PHE LEU LEU SEQRES 7 C 208 ASP THR ALA GLY SER ASP LEU TYR LYS GLU GLN ILE SER SEQRES 8 C 208 GLN TYR TRP ASN GLY VAL TYR TYR ALA ILE LEU VAL PHE SEQRES 9 C 208 ASP VAL SER SER MET GLU SER PHE GLU SER CYS LYS ALA SEQRES 10 C 208 TRP PHE GLU LEU LEU LYS SER ALA ARG PRO ASP ARG GLU SEQRES 11 C 208 ARG PRO LEU ARG ALA VAL LEU VAL ALA ASN LYS THR ASP SEQRES 12 C 208 LEU PRO PRO GLN ARG HIS GLN VAL ARG LEU ASP MET ALA SEQRES 13 C 208 GLN ASP TRP ALA THR THR ASN THR LEU ASP PHE PHE ASP SEQRES 14 C 208 VAL SER ALA ASN PRO PRO GLY LYS ASP ALA ASP ALA PRO SEQRES 15 C 208 PHE LEU SER ILE ALA THR THR PHE TYR ARG ASN TYR GLU SEQRES 16 C 208 ASP LYS VAL ALA ALA PHE GLN ASP ALA CYS ARG ASN TYR SEQRES 1 D 208 GLY ALA ALA SER MET VAL LYS LYS GLU VAL LYS PRO ILE SEQRES 2 D 208 ASP ILE THR ALA THR LEU ARG CYS LYS VAL ALA VAL VAL SEQRES 3 D 208 GLY GLU ALA THR VAL GLY LYS SER ALA LEU ILE SER MET SEQRES 4 D 208 PHE THR SER LYS GLY SER LYS PHE LEU LYS ASP TYR ALA SEQRES 5 D 208 MET THR SER GLY VAL GLU VAL VAL VAL ALA PRO VAL THR SEQRES 6 D 208 ILE PRO ASP THR THR VAL SER VAL GLU LEU PHE LEU LEU SEQRES 7 D 208 ASP THR ALA GLY SER ASP LEU TYR LYS GLU GLN ILE SER SEQRES 8 D 208 GLN TYR TRP ASN GLY VAL TYR TYR ALA ILE LEU VAL PHE SEQRES 9 D 208 ASP VAL SER SER MET GLU SER PHE GLU SER CYS LYS ALA SEQRES 10 D 208 TRP PHE GLU LEU LEU LYS SER ALA ARG PRO ASP ARG GLU SEQRES 11 D 208 ARG PRO LEU ARG ALA VAL LEU VAL ALA ASN LYS THR ASP SEQRES 12 D 208 LEU PRO PRO GLN ARG HIS GLN VAL ARG LEU ASP MET ALA SEQRES 13 D 208 GLN ASP TRP ALA THR THR ASN THR LEU ASP PHE PHE ASP SEQRES 14 D 208 VAL SER ALA ASN PRO PRO GLY LYS ASP ALA ASP ALA PRO SEQRES 15 D 208 PHE LEU SER ILE ALA THR THR PHE TYR ARG ASN TYR GLU SEQRES 16 D 208 ASP LYS VAL ALA ALA PHE GLN ASP ALA CYS ARG ASN TYR HET CA A 201 1 HET CA B 201 1 HET MG C 301 1 HET CL D1204 1 HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 5 CA 2(CA 2+) FORMUL 7 MG MG 2+ FORMUL 8 CL CL 1- FORMUL 9 HOH *26(H2 O) HELIX 1 1 ARG A 6 GLY A 10 5 5 HELIX 2 2 PRO A 24 LEU A 29 5 6 HELIX 3 3 ARG B 6 GLY B 10 5 5 HELIX 4 4 PRO B 24 LEU B 29 5 6 HELIX 5 5 GLU C 24 VAL C 27 5 4 HELIX 6 6 GLY C 28 SER C 38 1 11 HELIX 7 7 SER C 79 ILE C 86 1 8 HELIX 8 8 SER C 104 ARG C 122 1 19 HELIX 9 9 ARG C 148 ASN C 159 1 12 HELIX 10 10 ALA C 175 TYR C 204 1 30 HELIX 11 11 GLU D 24 VAL D 27 5 4 HELIX 12 12 GLY D 28 LYS D 39 1 12 HELIX 13 13 SER D 79 SER D 87 1 9 HELIX 14 14 SER D 104 ARG D 122 1 19 HELIX 15 15 ARG D 148 ASN D 159 1 12 HELIX 16 16 ALA D 175 CYS D 201 1 27 SHEET 1 AA 2 LYS A 2 ASP A 3 0 SHEET 2 AA 2 THR A 125 GLY A 134 -1 O GLY A 133 N LYS A 2 SHEET 1 AB 2 LEU A 12 VAL A 13 0 SHEET 2 AB 2 GLN A 45 LEU A 65 -1 O ARG A 50 N LEU A 12 SHEET 1 AC 2 TRP A 37 VAL A 38 0 SHEET 2 AC 2 THR A 125 GLY A 134 1 O VAL A 126 N TRP A 37 SHEET 1 AD 6 GLU A 84 GLU A 90 0 SHEET 2 AD 6 VAL A 67 CYS A 75 -1 O LEU A 70 N VAL A 89 SHEET 3 AD 6 GLN A 99 GLY A 119 -1 N LYS A 110 O CYS A 75 SHEET 4 AD 6 GLN A 45 LEU A 65 -1 O GLN A 45 N LEU A 116 SHEET 5 AD 6 THR A 125 GLY A 134 -1 O THR A 125 N LEU A 65 SHEET 6 AD 6 TRP A 37 VAL A 38 1 O TRP A 37 N VAL A 126 SHEET 1 AE 5 GLU A 84 GLU A 90 0 SHEET 2 AE 5 VAL A 67 CYS A 75 -1 O LEU A 70 N VAL A 89 SHEET 3 AE 5 GLN A 99 GLY A 119 -1 N LYS A 110 O CYS A 75 SHEET 4 AE 5 GLN A 45 LEU A 65 -1 O GLN A 45 N LEU A 116 SHEET 5 AE 5 LEU A 12 VAL A 13 -1 O LEU A 12 N ARG A 50 SHEET 1 BA 2 LEU B 12 VAL B 13 0 SHEET 2 BA 2 GLN B 45 LEU B 65 -1 O ARG B 50 N LEU B 12 SHEET 1 BB 6 TRP B 37 VAL B 38 0 SHEET 2 BB 6 THR B 125 GLY B 134 -1 O VAL B 126 N TRP B 37 SHEET 3 BB 6 GLN B 45 LEU B 65 -1 O ARG B 56 N GLY B 134 SHEET 4 BB 6 GLN B 99 GLY B 119 -1 O GLN B 99 N SER B 64 SHEET 5 BB 6 VAL B 67 CYS B 75 -1 N ARG B 68 O GLN B 118 SHEET 6 BB 6 GLU B 84 GLU B 90 -1 O GLU B 84 N LYS B 74 SHEET 1 BC 4 TRP B 37 VAL B 38 0 SHEET 2 BC 4 THR B 125 GLY B 134 -1 O VAL B 126 N TRP B 37 SHEET 3 BC 4 GLN B 45 LEU B 65 -1 O ARG B 56 N GLY B 134 SHEET 4 BC 4 LEU B 12 VAL B 13 -1 O LEU B 12 N ARG B 50 SHEET 1 CA 6 VAL C 57 THR C 61 0 SHEET 2 CA 6 VAL C 67 ASP C 75 -1 O VAL C 69 N VAL C 60 SHEET 3 CA 6 ALA C 13 VAL C 22 1 O ALA C 13 N SER C 68 SHEET 4 CA 6 TYR C 95 ASP C 101 1 O TYR C 95 N ALA C 20 SHEET 5 CA 6 ARG C 130 ASN C 136 1 O ARG C 130 N ALA C 96 SHEET 6 CA 6 ASP C 162 ASP C 165 1 O ASP C 162 N LEU C 133 SHEET 1 DA 6 ALA D 58 THR D 61 0 SHEET 2 DA 6 VAL D 67 ASP D 75 -1 O VAL D 69 N VAL D 60 SHEET 3 DA 6 ALA D 13 VAL D 22 1 O ALA D 13 N SER D 68 SHEET 4 DA 6 TYR D 95 ASP D 101 1 O TYR D 95 N ALA D 20 SHEET 5 DA 6 ARG D 130 ASN D 136 1 O ARG D 130 N ALA D 96 SHEET 6 DA 6 ASP D 162 ASP D 165 1 O ASP D 162 N LEU D 133 LINK O ASN A 27 CA CA A 201 1555 1555 2.67 LINK OD1 ASP A 30 CA CA A 201 1555 1555 2.96 LINK O LYS A 32 CA CA A 201 1555 1555 2.77 LINK O THR A 35 CA CA A 201 1555 1555 2.50 LINK OG1 THR A 35 CA CA A 201 1555 1555 2.44 LINK O ASN A 127 CA CA A 201 1555 1555 2.81 LINK O ASN B 27 CA CA B 201 1555 1555 2.61 LINK OD1 ASP B 30 CA CA B 201 1555 1555 2.70 LINK O LYS B 32 CA CA B 201 1555 1555 2.68 LINK O THR B 35 CA CA B 201 1555 1555 2.89 LINK OG1 THR B 35 CA CA B 201 1555 1555 2.60 LINK O ASN B 127 CA CA B 201 1555 1555 2.79 LINK O SER C 103 MG MG C 301 1555 1555 2.99 LINK O HIS C 145 MG MG C 301 1555 1555 2.59 CISPEP 1 PHE A 43 PRO A 44 0 3.12 CISPEP 2 PHE B 43 PRO B 44 0 4.71 CISPEP 3 ALA C 77 GLY C 78 0 4.76 CISPEP 4 GLY C 78 SER C 79 0 14.06 CISPEP 5 ARG D 202 ASN D 203 0 0.15 SITE 1 AC1 5 ASN A 27 ASP A 30 LYS A 32 THR A 35 SITE 2 AC1 5 ASN A 127 SITE 1 AC2 5 ASN B 27 ASP B 30 LYS B 32 THR B 35 SITE 2 AC2 5 ASN B 127 SITE 1 AC3 7 VAL C 102 SER C 103 SER C 104 MET C 105 SITE 2 AC3 7 GLN C 143 HIS C 145 GLN C 146 SITE 1 AC4 4 ALA D 25 GLY D 28 LYS D 29 SER D 30 CRYST1 50.020 68.300 93.780 90.00 92.42 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019992 0.000000 0.000845 0.00000 SCALE2 0.000000 0.014641 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010673 0.00000 MTRIX1 1 0.977500 0.193185 0.084700 -1.58298 1 MTRIX2 1 0.185877 -0.978705 0.087095 -6.61124 1 MTRIX3 1 0.099722 -0.069391 -0.992593 45.67190 1 MTRIX1 2 0.983811 -0.147133 0.102310 -7.40766 1 MTRIX2 2 -0.141925 -0.988265 -0.056480 1.40745 1 MTRIX3 2 0.109420 0.041045 -0.993148 44.29760 1