HEADER APOPTOSIS 11-MAR-11 2YC9 OBSLTE 11-JUL-12 2YC9 4AYZ TITLE X-RAY STRUCTURE OF HUMAN SOUL COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEME-BINDING PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PLACENTAL PROTEIN 23, PP23, PROTEIN SOUL; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTYB12 KEYWDS APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR F.FREIRE,A.L.CARVALHO,S.S.AVEIRO,P.CHARBONNIER,J.M.MOULIS,M.J.ROMAO, AUTHOR 2 B.J.GOODFELLOW,A.L.MACEDO REVDAT 2 11-JUL-12 2YC9 1 OBSLTE REVDAT 1 21-MAR-12 2YC9 0 JRNL AUTH F.FREIRE,A.L.CARVALHO,S.S.AVEIRO,P.CHARBONNIER,J.M.MOULIS, JRNL AUTH 2 M.J.ROMAO,B.J.GOODFELLOW,A.L.MACEDO JRNL TITL HUMAN SOUL: A HEME-BINDING OR A BH3 DOMAIN-CONTAINING JRNL TITL 2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.76 REMARK 3 NUMBER OF REFLECTIONS : 10509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.22731 REMARK 3 R VALUE (WORKING SET) : 0.22526 REMARK 3 FREE R VALUE : 0.27039 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.8 REMARK 3 FREE R VALUE TEST SET COUNT : 529 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.500 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.591 REMARK 3 REFLECTION IN BIN (WORKING SET) : 757 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.266 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.293 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2727 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.350 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.39 REMARK 3 B22 (A**2) : -1.39 REMARK 3 B33 (A**2) : 2.09 REMARK 3 B12 (A**2) : -0.70 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.490 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.380 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 53.719 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.900 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.833 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2800 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3837 ; 1.028 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 362 ; 5.552 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;34.914 ;24.874 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 385 ;16.594 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;17.474 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 425 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2199 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1822 ; 0.210 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2911 ; 0.436 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 978 ; 0.859 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 926 ; 1.370 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 19 A 198 5 REMARK 3 1 B 19 B 198 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 720 ; 0.64 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 720 ; 0.64 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 595 ; 0.82 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 595 ; 0.82 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 720 ; 0.16 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 720 ; 0.16 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 595 ; 0.22 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 595 ; 0.22 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9824 47.3636 82.7935 REMARK 3 T TENSOR REMARK 3 T11: 0.1649 T22: 0.2453 REMARK 3 T33: 0.0131 T12: 0.1642 REMARK 3 T13: 0.0188 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 4.5091 L22: 8.3690 REMARK 3 L33: 3.3445 L12: -3.5838 REMARK 3 L13: 0.6819 L23: -0.1178 REMARK 3 S TENSOR REMARK 3 S11: -0.0418 S12: -0.0251 S13: -0.1364 REMARK 3 S21: 0.1815 S22: 0.0513 S23: 0.1660 REMARK 3 S31: 0.3335 S32: -0.0049 S33: -0.0095 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 19 B 198 REMARK 3 ORIGIN FOR THE GROUP (A): 52.7202 28.4864 58.2559 REMARK 3 T TENSOR REMARK 3 T11: 0.5287 T22: 0.1212 REMARK 3 T33: 0.1820 T12: 0.0541 REMARK 3 T13: 0.0114 T23: -0.1325 REMARK 3 L TENSOR REMARK 3 L11: 6.5195 L22: 8.3667 REMARK 3 L33: 6.0240 L12: -4.7215 REMARK 3 L13: -2.3817 L23: 1.8526 REMARK 3 S TENSOR REMARK 3 S11: 0.0665 S12: -0.0685 S13: 0.4585 REMARK 3 S21: -0.4032 S22: 0.1575 S23: -0.6125 REMARK 3 S31: -0.5307 S32: -0.0903 S33: -0.2239 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2YC9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAR-11. REMARK 100 THE PDBE ID CODE IS EBI-47652. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10509 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.50 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.6 REMARK 200 R MERGE (I) : 0.22 REMARK 200 R SYM (I) : 0.22 REMARK 200 FOR THE DATA SET : 11.0 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.1 REMARK 200 R MERGE FOR SHELL (I) : 0.98 REMARK 200 R SYM FOR SHELL (I) : 0.98 REMARK 200 FOR SHELL : 4.0 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M NA/K PHOSPHATE 5.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.48000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.24000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 88.48000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.24000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.48000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 44.24000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 88.48000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.24000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 LEU A 5 REMARK 465 GLN A 6 REMARK 465 PRO A 7 REMARK 465 ASP A 8 REMARK 465 PRO A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 GLU A 13 REMARK 465 ASP A 14 REMARK 465 GLU A 199 REMARK 465 PRO A 200 REMARK 465 THR A 201 REMARK 465 LYS A 202 REMARK 465 GLU A 203 REMARK 465 ASN A 204 REMARK 465 GLU A 205 REMARK 465 ALA B -2 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 PRO B 4 REMARK 465 LEU B 5 REMARK 465 GLN B 6 REMARK 465 PRO B 7 REMARK 465 ASP B 8 REMARK 465 PRO B 9 REMARK 465 GLY B 10 REMARK 465 ALA B 11 REMARK 465 ALA B 12 REMARK 465 GLU B 13 REMARK 465 ASP B 14 REMARK 465 ALA B 15 REMARK 465 ALA B 16 REMARK 465 ALA B 17 REMARK 465 GLN B 18 REMARK 465 GLU B 199 REMARK 465 PRO B 200 REMARK 465 THR B 201 REMARK 465 LYS B 202 REMARK 465 GLU B 203 REMARK 465 ASN B 204 REMARK 465 GLU B 205 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 ASP A 30 CG OD1 OD2 REMARK 470 GLN A 34 CG CD OE1 NE2 REMARK 470 SER A 37 OG REMARK 470 GLN A 63 CG CD OE1 NE2 REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 GLU A 78 CG CD OE1 OE2 REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 ARG A 121 CG CD NE CZ NH1 NH2 REMARK 470 SER A 125 OG REMARK 470 ASP A 126 CG OD1 OD2 REMARK 470 SER A 146 OG REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 SER A 160 OG REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 ASN A 180 CG OD1 ND2 REMARK 470 SER A 181 OG REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 ASP B 30 CG OD1 OD2 REMARK 470 GLN B 34 CG CD OE1 NE2 REMARK 470 SER B 37 OG REMARK 470 GLU B 54 CG CD OE1 OE2 REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 GLU B 80 CG CD OE1 OE2 REMARK 470 LYS B 82 CG CD CE NZ REMARK 470 LYS B 84 CG CD CE NZ REMARK 470 SER B 97 OG REMARK 470 SER B 101 OG REMARK 470 SER B 103 OG REMARK 470 ARG B 121 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 124 CG CD OE1 OE2 REMARK 470 ASP B 143 CG OD1 OD2 REMARK 470 PHE B 145 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 147 OG REMARK 470 LYS B 150 CG CD CE NZ REMARK 470 GLU B 153 CG CD OE1 OE2 REMARK 470 SER B 160 OG REMARK 470 VAL B 183 CG1 CG2 REMARK 470 LYS B 184 CG CD CE NZ REMARK 470 LEU B 185 CG CD1 CD2 REMARK 470 LEU B 186 CG CD1 CD2 REMARK 470 ASN B 187 CG OD1 ND2 REMARK 470 LYS B 197 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 35 C - N - CA ANGL. DEV. = 10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 29 15.00 -64.27 REMARK 500 ALA A 31 -148.23 46.88 REMARK 500 SER A 97 87.22 -69.41 REMARK 500 SER A 181 -142.63 -51.30 REMARK 500 VAL A 183 91.91 45.82 REMARK 500 ASN A 187 23.05 -75.66 REMARK 500 ALA B 31 -100.77 -63.73 REMARK 500 PRO B 35 -55.90 -16.27 REMARK 500 TYR B 38 -154.57 -138.67 REMARK 500 TYR B 179 -63.45 -124.87 REMARK 500 PRO B 182 100.60 12.05 REMARK 500 VAL B 183 109.37 69.44 REMARK 500 LYS B 184 84.99 -64.00 REMARK 500 ASN B 187 37.53 -84.18 REMARK 500 REMARK 500 REMARK: NULL DBREF 2YC9 A 1 205 UNP Q9Y5Z4 HEBP2_HUMAN 1 205 DBREF 2YC9 B 1 205 UNP Q9Y5Z4 HEBP2_HUMAN 1 205 SEQADV 2YC9 ALA A -2 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 2YC9 GLY A -1 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 2YC9 HIS A 0 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 2YC9 ALA B -2 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 2YC9 GLY B -1 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 2YC9 HIS B 0 UNP Q9Y5Z4 EXPRESSION TAG SEQRES 1 A 208 ALA GLY HIS MSE ALA GLU PRO LEU GLN PRO ASP PRO GLY SEQRES 2 A 208 ALA ALA GLU ASP ALA ALA ALA GLN ALA VAL GLU THR PRO SEQRES 3 A 208 GLY TRP LYS ALA PRO GLU ASP ALA GLY PRO GLN PRO GLY SEQRES 4 A 208 SER TYR GLU ILE ARG HIS TYR GLY PRO ALA LYS TRP VAL SEQRES 5 A 208 SER THR SER VAL GLU SER MSE ASP TRP ASP SER ALA ILE SEQRES 6 A 208 GLN THR GLY PHE THR LYS LEU ASN SER TYR ILE GLN GLY SEQRES 7 A 208 LYS ASN GLU LYS GLU MSE LYS ILE LYS MSE THR ALA PRO SEQRES 8 A 208 VAL THR SER TYR VAL GLU PRO GLY SER GLY PRO PHE SER SEQRES 9 A 208 GLU SER THR ILE THR ILE SER LEU TYR ILE PRO SER GLU SEQRES 10 A 208 GLN GLN PHE ASP PRO PRO ARG PRO LEU GLU SER ASP VAL SEQRES 11 A 208 PHE ILE GLU ASP ARG ALA GLU MSE THR VAL PHE VAL ARG SEQRES 12 A 208 SER PHE ASP GLY PHE SER SER ALA GLN LYS ASN GLN GLU SEQRES 13 A 208 GLN LEU LEU THR LEU ALA SER ILE LEU ARG GLU ASP GLY SEQRES 14 A 208 LYS VAL PHE ASP GLU LYS VAL TYR TYR THR ALA GLY TYR SEQRES 15 A 208 ASN SER PRO VAL LYS LEU LEU ASN ARG ASN ASN GLU VAL SEQRES 16 A 208 TRP LEU ILE GLN LYS ASN GLU PRO THR LYS GLU ASN GLU SEQRES 1 B 208 ALA GLY HIS MSE ALA GLU PRO LEU GLN PRO ASP PRO GLY SEQRES 2 B 208 ALA ALA GLU ASP ALA ALA ALA GLN ALA VAL GLU THR PRO SEQRES 3 B 208 GLY TRP LYS ALA PRO GLU ASP ALA GLY PRO GLN PRO GLY SEQRES 4 B 208 SER TYR GLU ILE ARG HIS TYR GLY PRO ALA LYS TRP VAL SEQRES 5 B 208 SER THR SER VAL GLU SER MSE ASP TRP ASP SER ALA ILE SEQRES 6 B 208 GLN THR GLY PHE THR LYS LEU ASN SER TYR ILE GLN GLY SEQRES 7 B 208 LYS ASN GLU LYS GLU MSE LYS ILE LYS MSE THR ALA PRO SEQRES 8 B 208 VAL THR SER TYR VAL GLU PRO GLY SER GLY PRO PHE SER SEQRES 9 B 208 GLU SER THR ILE THR ILE SER LEU TYR ILE PRO SER GLU SEQRES 10 B 208 GLN GLN PHE ASP PRO PRO ARG PRO LEU GLU SER ASP VAL SEQRES 11 B 208 PHE ILE GLU ASP ARG ALA GLU MSE THR VAL PHE VAL ARG SEQRES 12 B 208 SER PHE ASP GLY PHE SER SER ALA GLN LYS ASN GLN GLU SEQRES 13 B 208 GLN LEU LEU THR LEU ALA SER ILE LEU ARG GLU ASP GLY SEQRES 14 B 208 LYS VAL PHE ASP GLU LYS VAL TYR TYR THR ALA GLY TYR SEQRES 15 B 208 ASN SER PRO VAL LYS LEU LEU ASN ARG ASN ASN GLU VAL SEQRES 16 B 208 TRP LEU ILE GLN LYS ASN GLU PRO THR LYS GLU ASN GLU MODRES 2YC9 MSE A 56 MET SELENOMETHIONINE MODRES 2YC9 MSE A 81 MET SELENOMETHIONINE MODRES 2YC9 MSE A 85 MET SELENOMETHIONINE MODRES 2YC9 MSE A 135 MET SELENOMETHIONINE MODRES 2YC9 MSE B 56 MET SELENOMETHIONINE MODRES 2YC9 MSE B 81 MET SELENOMETHIONINE MODRES 2YC9 MSE B 85 MET SELENOMETHIONINE MODRES 2YC9 MSE B 135 MET SELENOMETHIONINE HET MSE A 56 8 HET MSE A 81 8 HET MSE A 85 8 HET MSE A 135 8 HET MSE B 56 8 HET MSE B 81 8 HET MSE B 85 8 HET MSE B 135 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) HELIX 1 1 ASP A 57 GLY A 75 1 19 HELIX 2 2 PRO A 112 GLN A 116 5 5 HELIX 3 3 SER A 147 GLY A 166 1 20 HELIX 4 4 ASP B 57 GLY B 75 1 19 HELIX 5 5 PRO B 112 GLN B 116 5 5 HELIX 6 6 SER B 147 ASP B 165 1 19 SHEET 1 AA 9 TRP A 25 LYS A 26 0 SHEET 2 AA 9 GLU A 39 TYR A 43 -1 O HIS A 42 N LYS A 26 SHEET 3 AA 9 MSE A 135 VAL A 139 -1 O MSE A 135 N TYR A 43 SHEET 4 AA 9 GLU A 191 ILE A 195 -1 O LEU A 194 N PHE A 138 SHEET 5 AA 9 TYR A 174 GLY A 178 -1 O TYR A 175 N TRP A 193 SHEET 6 AA 9 VAL A 89 GLU A 94 -1 O VAL A 89 N GLY A 178 SHEET 7 AA 9 SER A 103 TYR A 110 -1 O THR A 104 N GLU A 94 SHEET 8 AA 9 ALA A 46 SER A 55 -1 O VAL A 49 N LEU A 109 SHEET 9 AA 9 VAL A 127 ARG A 132 -1 O PHE A 128 N SER A 50 SHEET 1 BA 9 TRP B 25 LYS B 26 0 SHEET 2 BA 9 GLU B 39 TYR B 43 -1 O HIS B 42 N LYS B 26 SHEET 3 BA 9 MSE B 135 PHE B 142 -1 O MSE B 135 N TYR B 43 SHEET 4 BA 9 ASN B 190 ILE B 195 -1 O ASN B 190 N PHE B 142 SHEET 5 BA 9 TYR B 174 GLY B 178 -1 O TYR B 175 N TRP B 193 SHEET 6 BA 9 VAL B 89 GLU B 94 -1 O VAL B 89 N GLY B 178 SHEET 7 BA 9 THR B 104 TYR B 110 -1 O THR B 104 N GLU B 94 SHEET 8 BA 9 ALA B 46 GLU B 54 -1 O VAL B 49 N LEU B 109 SHEET 9 BA 9 VAL B 127 ARG B 132 -1 O PHE B 128 N SER B 50 LINK C SER A 55 N MSE A 56 1555 1555 1.33 LINK C MSE A 56 N ASP A 57 1555 1555 1.33 LINK C GLU A 80 N MSE A 81 1555 1555 1.33 LINK C MSE A 81 N LYS A 82 1555 1555 1.33 LINK C LYS A 84 N MSE A 85 1555 1555 1.33 LINK C MSE A 85 N THR A 86 1555 1555 1.33 LINK C GLU A 134 N MSE A 135 1555 1555 1.33 LINK C MSE A 135 N THR A 136 1555 1555 1.33 LINK C SER B 55 N MSE B 56 1555 1555 1.33 LINK C MSE B 56 N ASP B 57 1555 1555 1.33 LINK C GLU B 80 N MSE B 81 1555 1555 1.33 LINK C MSE B 81 N LYS B 82 1555 1555 1.33 LINK C LYS B 84 N MSE B 85 1555 1555 1.33 LINK C MSE B 85 N THR B 86 1555 1555 1.33 LINK C GLU B 134 N MSE B 135 1555 1555 1.33 LINK C MSE B 135 N THR B 136 1555 1555 1.33 CISPEP 1 ALA A 87 PRO A 88 0 1.07 CISPEP 2 ALA B 87 PRO B 88 0 1.29 CRYST1 146.330 146.330 132.720 90.00 90.00 120.00 P 62 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006834 0.003946 0.000000 0.00000 SCALE2 0.000000 0.007891 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007535 0.00000