HEADER HYDROLASE 17-MAR-11 2YD3 TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR TITLE 2 PROTEIN TYROSINE PHOSPHATASE SIGMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE S; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IG1-2, RESIDUES 30-228; COMPND 5 SYNONYM: PROTEIN TYROSINE PHOSPHATASE SIGMA, R-PTP-S, RECEPTOR-TYPE COMPND 6 TYROSINE-PROTEIN PHOSPHATASE SIGMA, R-PTP-SIGMA, RPTPS; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PHLSEC KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.H.COLES,Y.SHEN,A.P.TENNEY,C.SIEBOLD,G.C.SUTTON,W.LU,J.T.GALLAGHER, AUTHOR 2 E.Y.JONES,J.G.FLANAGAN,A.R.ARICESCU REVDAT 4 16-OCT-24 2YD3 1 REMARK REVDAT 3 20-DEC-23 2YD3 1 REMARK REVDAT 2 04-MAY-11 2YD3 1 JRNL REMARK FORMUL REVDAT 1 13-APR-11 2YD3 0 JRNL AUTH C.H.COLES,Y.SHEN,A.P.TENNEY,C.SIEBOLD,G.C.SUTTON,W.LU, JRNL AUTH 2 J.T.GALLAGHER,E.Y.JONES,J.G.FLANAGAN,A.R.ARICESCU JRNL TITL PROTEOGLYCAN-SPECIFIC MOLECULAR SWITCH FOR RPTP SIGMA JRNL TITL 2 CLUSTERING AND NEURONAL EXTENSION. JRNL REF SCIENCE V. 332 484 2011 JRNL REFN ISSN 0036-8075 JRNL PMID 21454754 JRNL DOI 10.1126/SCIENCE.1200840 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 11897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.9600 - 3.6499 1.00 2933 149 0.1688 0.1941 REMARK 3 2 3.6499 - 2.8976 1.00 2819 149 0.2171 0.2576 REMARK 3 3 2.8976 - 2.5315 1.00 2808 129 0.2451 0.2834 REMARK 3 4 2.5315 - 2.3001 1.00 2768 142 0.2361 0.2869 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 21.60 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.00200 REMARK 3 B22 (A**2) : -9.00200 REMARK 3 B33 (A**2) : 16.22340 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1578 REMARK 3 ANGLE : 0.887 2136 REMARK 3 CHIRALITY : 0.055 235 REMARK 3 PLANARITY : 0.003 287 REMARK 3 DIHEDRAL : 13.045 605 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 29:129) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1745 0.6508 4.9492 REMARK 3 T TENSOR REMARK 3 T11: 0.1934 T22: 0.2194 REMARK 3 T33: 0.1993 T12: 0.0187 REMARK 3 T13: 0.0016 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 0.2635 L22: 0.5995 REMARK 3 L33: 0.1008 L12: 0.0244 REMARK 3 L13: -0.1363 L23: -0.1421 REMARK 3 S TENSOR REMARK 3 S11: -0.0948 S12: 0.1168 S13: -0.1924 REMARK 3 S21: -0.0596 S22: -0.0207 S23: 0.0121 REMARK 3 S31: 0.0857 S32: 0.0072 S33: -0.0011 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 130:228) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8477 7.8788 20.9315 REMARK 3 T TENSOR REMARK 3 T11: 0.1608 T22: 0.1766 REMARK 3 T33: 0.1772 T12: -0.0449 REMARK 3 T13: 0.0302 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.0053 L22: 0.0301 REMARK 3 L33: 0.7177 L12: -0.2464 REMARK 3 L13: -0.2189 L23: 0.2354 REMARK 3 S TENSOR REMARK 3 S11: 0.0532 S12: -0.1177 S13: -0.1826 REMARK 3 S21: 0.0131 S22: -0.1215 S23: 0.0939 REMARK 3 S31: 0.0298 S32: 0.0493 S33: -0.0008 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YD3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1290047743. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.06 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12003 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.30 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 18.30 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2YD4 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM SULPHATE, 20% W/V PEG REMARK 280 3350, PH 6.6 . REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.10900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 52.10900 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.42500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.10900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.71250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.10900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.13750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.10900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.13750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.10900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.71250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 52.10900 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 52.10900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.42500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 52.10900 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 52.10900 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.42500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 52.10900 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 71.13750 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 52.10900 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 23.71250 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 52.10900 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 23.71250 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 52.10900 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 71.13750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 52.10900 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 52.10900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 47.42500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2058 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 27 REMARK 465 THR A 28 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 74 108.42 -169.66 REMARK 500 LEU A 143 121.16 -39.09 REMARK 500 THR A 149 -25.01 95.79 REMARK 500 PHE A 172 -6.47 80.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1230 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FH7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PHOSPHATASE DOMAINS OF HUMAN PTPSIGMA REMARK 900 RELATED ID: 2YD6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE DELTA REMARK 900 RELATED ID: 2YD7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE DELTA REMARK 900 RELATED ID: 2YD1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF DROSOPHILA REMARK 900 RECEPTOR PROTEIN TYROSINE PHOSPHATASE DLAR REMARK 900 RELATED ID: 2YD8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE LAR IN COMPLEX WITH SUCROSE REMARK 900 OCTASULPHATE REMARK 900 RELATED ID: 2YD5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE LAR REMARK 900 RELATED ID: 2YD2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE SIGMA REMARK 900 RELATED ID: 2YD4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF CHICKEN REMARK 900 RECEPTOR PROTEIN TYROSINE PHOSPHATASE SIGMA REMARK 900 RELATED ID: 2YD9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-3 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE SIGMA REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE N-TERMINAL THREE AMINO ACID RESIDUES (ETG) DERIVE FROM REMARK 999 THE PHLSEC VECTOR. THIS RPTPSIGMA IG1-2 CRYSTAL WAS OBTAINED REMARK 999 AFTER PROTEOLYTIC CLEAVAGE OF RPTPSIGMA IG1-3 PROTEIN REMARK 999 (TO RESIDUE 321, PLUS GTKHHHHHH). THIS IS ISOFORM 2 Q13332-6. DBREF 2YD3 A 30 228 UNP Q13332 PTPRS_HUMAN 30 228 SEQADV 2YD3 GLU A 27 UNP Q13332 EXPRESSION TAG SEQADV 2YD3 THR A 28 UNP Q13332 EXPRESSION TAG SEQADV 2YD3 GLY A 29 UNP Q13332 EXPRESSION TAG SEQRES 1 A 202 GLU THR GLY GLU GLU PRO PRO ARG PHE ILE LYS GLU PRO SEQRES 2 A 202 LYS ASP GLN ILE GLY VAL SER GLY GLY VAL ALA SER PHE SEQRES 3 A 202 VAL CYS GLN ALA THR GLY ASP PRO LYS PRO ARG VAL THR SEQRES 4 A 202 TRP ASN LYS LYS GLY LYS LYS VAL ASN SER GLN ARG PHE SEQRES 5 A 202 GLU THR ILE GLU PHE ASP GLU SER ALA GLY ALA VAL LEU SEQRES 6 A 202 ARG ILE GLN PRO LEU ARG THR PRO ARG ASP GLU ASN VAL SEQRES 7 A 202 TYR GLU CYS VAL ALA GLN ASN SER VAL GLY GLU ILE THR SEQRES 8 A 202 VAL HIS ALA LYS LEU THR VAL LEU ARG GLU ASP GLN LEU SEQRES 9 A 202 PRO SER GLY PHE PRO ASN ILE ASP MET GLY PRO GLN LEU SEQRES 10 A 202 LYS VAL VAL GLU ARG THR ARG THR ALA THR MET LEU CYS SEQRES 11 A 202 ALA ALA SER GLY ASN PRO ASP PRO GLU ILE THR TRP PHE SEQRES 12 A 202 LYS ASP PHE LEU PRO VAL ASP PRO SER ALA SER ASN GLY SEQRES 13 A 202 ARG ILE LYS GLN LEU ARG SER GLY ALA LEU GLN ILE GLU SEQRES 14 A 202 SER SER GLU GLU THR ASP GLN GLY LYS TYR GLU CYS VAL SEQRES 15 A 202 ALA THR ASN SER ALA GLY VAL ARG TYR SER SER PRO ALA SEQRES 16 A 202 ASN LEU TYR VAL ARG VAL ARG HET NA A1229 1 HET CL A1230 1 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 2 NA NA 1+ FORMUL 3 CL CL 1- FORMUL 4 HOH *82(H2 O) HELIX 1 1 ASP A 84 SER A 86 5 3 HELIX 2 2 ARG A 126 LEU A 130 5 5 HELIX 3 3 ASP A 176 SER A 180 5 5 HELIX 4 4 GLU A 198 GLN A 202 5 5 SHEET 1 AA 4 GLU A 31 LYS A 37 0 SHEET 2 AA 4 ALA A 50 ASP A 59 -1 O GLN A 55 N ILE A 36 SHEET 3 AA 4 GLY A 88 ILE A 93 -1 O ALA A 89 N CYS A 54 SHEET 4 AA 4 PHE A 78 PHE A 83 -1 O GLU A 79 N ARG A 92 SHEET 1 AB 5 GLN A 42 VAL A 45 0 SHEET 2 AB 5 GLY A 114 LEU A 125 1 O LYS A 121 N GLN A 42 SHEET 3 AB 5 VAL A 104 ASN A 111 -1 O TYR A 105 N ALA A 120 SHEET 4 AB 5 ARG A 63 LYS A 68 -1 O ARG A 63 N GLN A 110 SHEET 5 AB 5 LYS A 71 LYS A 72 -1 O LYS A 71 N LYS A 68 SHEET 1 AC 2 ASN A 136 MET A 139 0 SHEET 2 AC 2 ALA A 157 SER A 159 -1 O ALA A 157 N MET A 139 SHEET 1 AD 4 LYS A 144 GLU A 147 0 SHEET 2 AD 4 ALA A 221 ARG A 226 1 O ASN A 222 N LYS A 144 SHEET 3 AD 4 GLY A 203 ASN A 211 -1 O GLY A 203 N LEU A 223 SHEET 4 AD 4 GLY A 214 TYR A 217 1 O GLY A 214 N ASN A 211 SHEET 1 AE 5 LYS A 144 GLU A 147 0 SHEET 2 AE 5 ALA A 221 ARG A 226 1 O ASN A 222 N LYS A 144 SHEET 3 AE 5 GLY A 203 ASN A 211 -1 O GLY A 203 N LEU A 223 SHEET 4 AE 5 GLU A 165 LYS A 170 -1 O GLU A 165 N THR A 210 SHEET 5 AE 5 LEU A 173 PRO A 174 -1 O LEU A 173 N LYS A 170 SHEET 1 AF 2 GLY A 214 TYR A 217 0 SHEET 2 AF 2 GLY A 203 ASN A 211 1 O ALA A 209 N ARG A 216 SHEET 1 AG 3 ALA A 152 MET A 154 0 SHEET 2 AG 3 LEU A 192 ILE A 194 -1 O LEU A 192 N MET A 154 SHEET 3 AG 3 ILE A 184 GLN A 186 -1 O LYS A 185 N GLN A 193 SSBOND 1 CYS A 54 CYS A 107 1555 1555 2.04 SSBOND 2 CYS A 156 CYS A 207 1555 1555 2.03 CISPEP 1 ASP A 59 PRO A 60 0 1.34 CISPEP 2 GLN A 94 PRO A 95 0 -6.38 CISPEP 3 THR A 98 PRO A 99 0 -2.60 CISPEP 4 ASN A 161 PRO A 162 0 0.82 SITE 1 AC1 4 LYS A 37 PRO A 39 LYS A 40 VAL A 53 SITE 1 AC2 3 ARG A 63 GLN A 142 LEU A 155 CRYST1 104.218 104.218 94.850 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009595 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009595 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010543 0.00000