HEADER HYDROLASE 17-MAR-11 2YD4 TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF CHICKEN RECEPTOR TITLE 2 PROTEIN TYROSINE PHOSPHATASE SIGMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN-TYROSINE PHOSPHATASE CRYPALPHA1 ISOFORM; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IG1-2, RESIDUES 29-226; COMPND 5 SYNONYM: RPTP, RECEPTOR PROTEIN TYROSINE PHOSPHATASE SIGMA; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PHLSEC KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.H.COLES,Y.SHEN,A.P.TENNEY,C.SIEBOLD,G.C.SUTTON,W.LU,J.T.GALLAGHER, AUTHOR 2 E.Y.JONES,J.G.FLANAGAN,A.R.ARICESCU REVDAT 3 06-NOV-24 2YD4 1 REMARK REVDAT 2 04-MAY-11 2YD4 1 JRNL REMARK REVDAT 1 13-APR-11 2YD4 0 JRNL AUTH C.H.COLES,Y.SHEN,A.P.TENNEY,C.SIEBOLD,G.C.SUTTON,W.LU, JRNL AUTH 2 J.T.GALLAGHER,E.Y.JONES,J.G.FLANAGAN,A.R.ARICESCU JRNL TITL PROTEOGLYCAN-SPECIFIC MOLECULAR SWITCH FOR RPTP SIGMA JRNL TITL 2 CLUSTERING AND NEURONAL EXTENSION. JRNL REF SCIENCE V. 332 484 2011 JRNL REFN ISSN 0036-8075 JRNL PMID 21454754 JRNL DOI 10.1126/SCIENCE.1200840 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0077 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1623 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2207 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1567 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 279 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.951 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1746 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1237 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2384 ; 1.421 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3028 ; 0.832 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 231 ; 6.492 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;36.743 ;24.189 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 296 ;12.531 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;14.827 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 261 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1972 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 331 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 130 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5621 0.3560 19.5092 REMARK 3 T TENSOR REMARK 3 T11: 0.0381 T22: 0.0476 REMARK 3 T33: 0.0285 T12: 0.0014 REMARK 3 T13: -0.0003 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 3.9244 L22: 1.6887 REMARK 3 L33: 1.0242 L12: -1.2512 REMARK 3 L13: -0.2895 L23: -0.1096 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: -0.0848 S13: -0.3191 REMARK 3 S21: 0.0727 S22: -0.0526 S23: 0.0597 REMARK 3 S31: 0.1417 S32: 0.1513 S33: 0.0559 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 131 A 231 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8701 9.3794 2.8298 REMARK 3 T TENSOR REMARK 3 T11: 0.0231 T22: 0.0450 REMARK 3 T33: 0.0087 T12: 0.0125 REMARK 3 T13: -0.0126 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.6323 L22: 3.6145 REMARK 3 L33: 1.9956 L12: 1.2336 REMARK 3 L13: -0.7045 L23: -1.2397 REMARK 3 S TENSOR REMARK 3 S11: 0.0478 S12: -0.0500 S13: -0.0238 REMARK 3 S21: -0.1686 S22: -0.0875 S23: 0.0947 REMARK 3 S31: 0.0189 S32: -0.1841 S33: 0.0397 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2YD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1290047745. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : XIA2, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31882 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 74.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.00 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.60 REMARK 200 R MERGE FOR SHELL (I) : 0.88000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD VIA AUTOSHARP INTERFACE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: THE STRUCTURE WAS DETERMINED BY SAD ANALYSIS USING DATA REMARK 200 COLLECTED FROM A SELENOMETHIONINE LABELLED PROTEIN CRYSTAL WHICH REMARK 200 DIFFRACTED TO 3.1A REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 8000, 0.1M CHES, PH 9.6 . REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.37250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 52.37250 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.30500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.37250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.65250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.37250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.95750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.37250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 70.95750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.37250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.65250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 52.37250 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 52.37250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.30500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 52.37250 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 52.37250 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.30500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 52.37250 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 70.95750 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 52.37250 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 23.65250 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 52.37250 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 23.65250 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 52.37250 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 70.95750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 52.37250 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 52.37250 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 47.30500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2081 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 26 REMARK 465 THR A 27 REMARK 465 GLY A 28 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2238 O HOH A 2240 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 73 106.63 -172.26 REMARK 500 LEU A 142 125.21 -39.93 REMARK 500 THR A 148 -11.54 81.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2044 DISTANCE = 6.75 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 1233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1236 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YD6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE DELTA REMARK 900 RELATED ID: 2YD7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE DELTA REMARK 900 RELATED ID: 2YD1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF DROSOPHILA REMARK 900 RECEPTOR PROTEIN TYROSINE PHOSPHATASE DLAR REMARK 900 RELATED ID: 2YD8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE LAR IN COMPLEX WITH SUCROSE REMARK 900 OCTASULPHATE REMARK 900 RELATED ID: 2YD5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE LAR REMARK 900 RELATED ID: 2YD2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE SIGMA REMARK 900 RELATED ID: 2YD9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-3 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE SIGMA REMARK 900 RELATED ID: 2YD3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE SIGMA REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE N-TERMINAL THREE AMINO ACID RESIDUES (ETG) AND THE C- REMARK 999 TERMINAL NINE AMINO ACID RESIDUES (GTKHHHHHH) DERIVE FROM REMARK 999 THE PHLSEC VECTOR. DBREF 2YD4 A 29 226 UNP Q90815 Q90815_CHICK 29 226 SEQADV 2YD4 GLU A 26 UNP Q90815 EXPRESSION TAG SEQADV 2YD4 THR A 27 UNP Q90815 EXPRESSION TAG SEQADV 2YD4 GLY A 28 UNP Q90815 EXPRESSION TAG SEQADV 2YD4 GLY A 227 UNP Q90815 EXPRESSION TAG SEQADV 2YD4 THR A 228 UNP Q90815 EXPRESSION TAG SEQADV 2YD4 LYS A 229 UNP Q90815 EXPRESSION TAG SEQADV 2YD4 HIS A 230 UNP Q90815 EXPRESSION TAG SEQADV 2YD4 HIS A 231 UNP Q90815 EXPRESSION TAG SEQADV 2YD4 HIS A 232 UNP Q90815 EXPRESSION TAG SEQADV 2YD4 HIS A 233 UNP Q90815 EXPRESSION TAG SEQADV 2YD4 HIS A 234 UNP Q90815 EXPRESSION TAG SEQADV 2YD4 HIS A 235 UNP Q90815 EXPRESSION TAG SEQRES 1 A 210 GLU THR GLY GLU SER PRO PRO VAL PHE ILE LYS LYS PRO SEQRES 2 A 210 VAL ASP GLN ILE GLY VAL SER GLY GLY VAL ALA SER PHE SEQRES 3 A 210 VAL CYS GLN ALA THR GLY ASP PRO LYS PRO ARG VAL THR SEQRES 4 A 210 TRP ASN LYS LYS GLY LYS LYS VAL ASN SER GLN ARG PHE SEQRES 5 A 210 GLU THR ILE GLU PHE ASP GLU SER ALA GLY ALA VAL LEU SEQRES 6 A 210 ARG ILE GLN PRO LEU ARG THR PRO ARG ASP GLU ASN ILE SEQRES 7 A 210 TYR GLU CYS VAL ALA GLN ASN PRO HIS GLY GLU VAL THR SEQRES 8 A 210 VAL HIS ALA LYS LEU THR VAL LEU ARG GLU ASP GLN LEU SEQRES 9 A 210 PRO PRO GLY PHE PRO ASN ILE ASP MET GLY PRO GLN LEU SEQRES 10 A 210 LYS VAL VAL GLU ARG THR ARG THR ALA THR MET LEU CYS SEQRES 11 A 210 ALA ALA SER GLY ASN PRO ASP PRO GLU ILE THR TRP PHE SEQRES 12 A 210 LYS ASP PHE LEU PRO VAL ASP PRO SER THR SER ASN GLY SEQRES 13 A 210 ARG ILE LYS GLN LEU ARG SER GLY GLY LEU GLN ILE GLU SEQRES 14 A 210 SER SER GLU GLU THR ASP GLN GLY LYS TYR GLU CYS VAL SEQRES 15 A 210 ALA SER ASN SER ALA GLY VAL ARG TYR SER SER PRO ALA SEQRES 16 A 210 ASN LEU TYR VAL ARG VAL GLY THR LYS HIS HIS HIS HIS SEQRES 17 A 210 HIS HIS HET CL A1232 1 HET PGE A1233 10 HET PEG A1234 7 HET PEG A1235 7 HET SO4 A1236 5 HETNAM CL CHLORIDE ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION FORMUL 2 CL CL 1- FORMUL 3 PGE C6 H14 O4 FORMUL 4 PEG 2(C4 H10 O3) FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *279(H2 O) HELIX 1 1 ASP A 83 SER A 85 5 3 HELIX 2 2 ARG A 125 LEU A 129 5 5 HELIX 3 3 ASP A 175 SER A 179 5 5 HELIX 4 4 GLU A 197 GLN A 201 5 5 SHEET 1 AA 4 SER A 30 LYS A 36 0 SHEET 2 AA 4 ALA A 49 ASP A 58 -1 O GLN A 54 N ILE A 35 SHEET 3 AA 4 GLY A 87 ILE A 92 -1 O ALA A 88 N CYS A 53 SHEET 4 AA 4 PHE A 77 PHE A 82 -1 O GLU A 78 N ARG A 91 SHEET 1 AB 5 GLN A 41 VAL A 44 0 SHEET 2 AB 5 GLY A 113 LEU A 124 1 O LYS A 120 N GLN A 41 SHEET 3 AB 5 ASN A 102 ASN A 110 -1 O ASN A 102 N LEU A 121 SHEET 4 AB 5 ARG A 62 LYS A 67 -1 O ARG A 62 N GLN A 109 SHEET 5 AB 5 LYS A 70 LYS A 71 -1 O LYS A 70 N LYS A 67 SHEET 1 AC 2 ASN A 135 MET A 138 0 SHEET 2 AC 2 ALA A 156 SER A 158 -1 O ALA A 156 N MET A 138 SHEET 1 AD 4 LYS A 143 GLU A 146 0 SHEET 2 AD 4 ALA A 220 ARG A 225 1 O ASN A 221 N LYS A 143 SHEET 3 AD 4 GLY A 202 ASN A 210 -1 O GLY A 202 N LEU A 222 SHEET 4 AD 4 GLY A 213 TYR A 216 1 O GLY A 213 N ASN A 210 SHEET 1 AE 5 LYS A 143 GLU A 146 0 SHEET 2 AE 5 ALA A 220 ARG A 225 1 O ASN A 221 N LYS A 143 SHEET 3 AE 5 GLY A 202 ASN A 210 -1 O GLY A 202 N LEU A 222 SHEET 4 AE 5 GLU A 164 LYS A 169 -1 O GLU A 164 N SER A 209 SHEET 5 AE 5 LEU A 172 PRO A 173 -1 O LEU A 172 N LYS A 169 SHEET 1 AF 2 GLY A 213 TYR A 216 0 SHEET 2 AF 2 GLY A 202 ASN A 210 1 O ALA A 208 N ARG A 215 SHEET 1 AG 3 ALA A 151 MET A 153 0 SHEET 2 AG 3 LEU A 191 ILE A 193 -1 O LEU A 191 N MET A 153 SHEET 3 AG 3 ILE A 183 GLN A 185 -1 O LYS A 184 N GLN A 192 SSBOND 1 CYS A 53 CYS A 106 1555 1555 2.05 SSBOND 2 CYS A 155 CYS A 206 1555 1555 2.03 CISPEP 1 ASP A 58 PRO A 59 0 1.13 CISPEP 2 GLN A 93 PRO A 94 0 -10.52 CISPEP 3 THR A 97 PRO A 98 0 7.12 CISPEP 4 ASN A 160 PRO A 161 0 -0.31 SITE 1 AC1 4 ARG A 62 GLN A 141 LEU A 154 HOH A2177 SITE 1 AC2 4 GLU A 146 ARG A 147 THR A 148 HOH A2185 SITE 1 AC3 2 ASN A 221 LEU A 222 SITE 1 AC4 2 ASN A 73 TYR A 223 SITE 1 AC5 3 ARG A 76 ARG A 99 HOH A2279 CRYST1 104.745 104.745 94.610 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009547 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010570 0.00000