HEADER HYDROLASE 17-MAR-11 2YD6 TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR TITLE 2 PROTEIN TYROSINE PHOSPHATASE DELTA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PTPRD PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IG1-2, RESIDUES 21-220; COMPND 5 SYNONYM: RPTPD, RECEPTOR PROTEIN TYROSINE PHOSPHATASE DELTA; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PHLSEC KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.H.COLES,Y.SHEN,A.P.TENNEY,C.SIEBOLD,G.C.SUTTON,W.LU,J.T.GALLAGHER, AUTHOR 2 E.Y.JONES,J.G.FLANAGAN,A.R.ARICESCU REVDAT 4 23-OCT-24 2YD6 1 REMARK REVDAT 3 20-DEC-23 2YD6 1 REMARK REVDAT 2 04-MAY-11 2YD6 1 REVDAT JRNL REMARK REVDAT 1 13-APR-11 2YD6 0 JRNL AUTH C.H.COLES,Y.SHEN,A.P.TENNEY,C.SIEBOLD,G.C.SUTTON,W.LU, JRNL AUTH 2 J.T.GALLAGHER,E.Y.JONES,J.G.FLANAGAN,A.R.ARICESCU JRNL TITL PROTEOGLYCAN-SPECIFIC MOLECULAR SWITCH FOR RPTP SIGMA JRNL TITL 2 CLUSTERING AND NEURONAL EXTENSION. JRNL REF SCIENCE V. 332 484 2011 JRNL REFN ISSN 0036-8075 JRNL PMID 21454754 JRNL DOI 10.1126/SCIENCE.1200840 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0077 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2250 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3070 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.1970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1507 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 254 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.053 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.467 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1721 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1221 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2370 ; 1.646 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2999 ; 0.855 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 241 ; 6.704 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;34.625 ;23.875 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 310 ;11.884 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;14.246 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 264 ; 0.267 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1984 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 344 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 9773 ; 4.991 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 255 ;12.543 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2888 ; 7.977 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 2YD6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1290047747. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : XIA2, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45165 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 49.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2YD4 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.085M TRI-SODIUM CITRATE DIHYDRATE, REMARK 280 25% PEG 4000, 15% GLYCEROL, PH 5.6 . REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.27333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.63667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.63667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 97.27333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.63667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 18 REMARK 465 THR A 19 REMARK 465 GLY A 20 REMARK 465 ASP A 167 REMARK 465 THR A 168 REMARK 465 SER A 169 REMARK 465 ASN A 170 REMARK 465 ASN A 171 REMARK 465 ASN A 172 REMARK 465 THR A 222 REMARK 465 LYS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2111 O HOH A 2112 2.13 REMARK 500 O HOH A 2185 O HOH A 2202 2.18 REMARK 500 O HOH A 2114 O HOH A 2115 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 134 131.19 -39.13 REMARK 500 THR A 140 -12.89 82.47 REMARK 500 GLU A 181 -126.77 51.69 REMARK 500 GLU A 181 -129.23 55.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 1223 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YD7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE DELTA REMARK 900 RELATED ID: 2YD1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF DROSOPHILA REMARK 900 RECEPTOR PROTEIN TYROSINE PHOSPHATASE DLAR REMARK 900 RELATED ID: 2YD8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE LAR IN COMPLEX WITH SUCROSE REMARK 900 OCTASULPHATE REMARK 900 RELATED ID: 2YD5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE LAR REMARK 900 RELATED ID: 2YD2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE SIGMA REMARK 900 RELATED ID: 2YD4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF CHICKEN REMARK 900 RECEPTOR PROTEIN TYROSINE PHOSPHATASE SIGMA REMARK 900 RELATED ID: 2YD9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-3 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE SIGMA REMARK 900 RELATED ID: 2YD3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE SIGMA REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE N-TERMINAL THREE AMINO ACID RESIDUES (ETG) AND THE C- REMARK 999 TERMINAL NINE AMINO ACID RESIDUES (GTKHHHHHH) DERIVE FROM REMARK 999 THE PHLSEC VECTOR. DBREF 2YD6 A 21 220 UNP Q3KPJ2 Q3KPJ2_HUMAN 21 220 SEQADV 2YD6 GLU A 18 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD6 THR A 19 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD6 GLY A 20 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD6 GLY A 221 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD6 THR A 222 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD6 LYS A 223 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD6 HIS A 224 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD6 HIS A 225 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD6 HIS A 226 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD6 HIS A 227 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD6 HIS A 228 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD6 HIS A 229 UNP Q3KPJ2 EXPRESSION TAG SEQRES 1 A 212 GLU THR GLY GLU THR PRO PRO ARG PHE THR ARG THR PRO SEQRES 2 A 212 VAL ASP GLN THR GLY VAL SER GLY GLY VAL ALA SER PHE SEQRES 3 A 212 ILE CYS GLN ALA THR GLY ASP PRO ARG PRO LYS ILE VAL SEQRES 4 A 212 TRP ASN LYS LYS GLY LYS LYS VAL SER ASN GLN ARG PHE SEQRES 5 A 212 GLU VAL ILE GLU PHE ASP ASP GLY SER GLY SER VAL LEU SEQRES 6 A 212 ARG ILE GLN PRO LEU ARG THR PRO ARG ASP GLU ALA ILE SEQRES 7 A 212 TYR GLU CYS VAL ALA SER ASN ASN VAL GLY GLU ILE SER SEQRES 8 A 212 VAL SER THR ARG LEU THR VAL LEU ARG GLU ASP GLN ILE SEQRES 9 A 212 PRO ARG GLY PHE PRO THR ILE ASP MET GLY PRO GLN LEU SEQRES 10 A 212 LYS VAL VAL GLU ARG THR ARG THR ALA THR MET LEU CYS SEQRES 11 A 212 ALA ALA SER GLY ASN PRO ASP PRO GLU ILE THR TRP PHE SEQRES 12 A 212 LYS ASP PHE LEU PRO VAL ASP THR SER ASN ASN ASN GLY SEQRES 13 A 212 ARG ILE LYS GLN LEU ARG SER GLU SER ILE GLY ALA LEU SEQRES 14 A 212 GLN ILE GLU GLN SER GLU GLU SER ASP GLN GLY LYS TYR SEQRES 15 A 212 GLU CYS VAL ALA THR ASN SER ALA GLY THR ARG TYR SER SEQRES 16 A 212 ALA PRO ALA ASN LEU TYR VAL ARG GLY THR LYS HIS HIS SEQRES 17 A 212 HIS HIS HIS HIS HET CL A1222 1 HET FLC A1223 13 HETNAM CL CHLORIDE ION HETNAM FLC CITRATE ANION FORMUL 2 CL CL 1- FORMUL 3 FLC C6 H5 O7 3- FORMUL 4 HOH *254(H2 O) HELIX 1 1 ASP A 75 GLY A 77 5 3 HELIX 2 2 ARG A 117 ILE A 121 5 5 HELIX 3 3 GLU A 192 GLN A 196 5 5 SHEET 1 AA 4 THR A 22 ARG A 28 0 SHEET 2 AA 4 ALA A 41 ASP A 50 -1 O GLN A 46 N THR A 27 SHEET 3 AA 4 GLY A 79 ILE A 84 -1 O SER A 80 N CYS A 45 SHEET 4 AA 4 PHE A 69 PHE A 74 -1 O GLU A 70 N ARG A 83 SHEET 1 AB 5 GLN A 33 VAL A 36 0 SHEET 2 AB 5 GLY A 105 LEU A 116 1 O ARG A 112 N GLN A 33 SHEET 3 AB 5 ALA A 94 ASN A 102 -1 O ALA A 94 N LEU A 113 SHEET 4 AB 5 LYS A 54 LYS A 59 -1 O LYS A 54 N SER A 101 SHEET 5 AB 5 LYS A 62 LYS A 63 -1 O LYS A 62 N LYS A 59 SHEET 1 AC 4 THR A 127 MET A 130 0 SHEET 2 AC 4 ALA A 143 SER A 150 -1 O ALA A 148 N ASP A 129 SHEET 3 AC 4 ILE A 183 ILE A 188 -1 O GLY A 184 N CYS A 147 SHEET 4 AC 4 ILE A 175 SER A 180 -1 O LYS A 176 N GLN A 187 SHEET 1 AD 4 LYS A 135 GLU A 138 0 SHEET 2 AD 4 ALA A 215 ARG A 220 1 O ASN A 216 N LYS A 135 SHEET 3 AD 4 GLY A 197 ASN A 205 -1 O GLY A 197 N LEU A 217 SHEET 4 AD 4 GLY A 208 TYR A 211 1 O GLY A 208 N ASN A 205 SHEET 1 AE 5 LYS A 135 GLU A 138 0 SHEET 2 AE 5 ALA A 215 ARG A 220 1 O ASN A 216 N LYS A 135 SHEET 3 AE 5 GLY A 197 ASN A 205 -1 O GLY A 197 N LEU A 217 SHEET 4 AE 5 GLU A 156 LYS A 161 -1 O GLU A 156 N THR A 204 SHEET 5 AE 5 LEU A 164 PRO A 165 -1 O LEU A 164 N LYS A 161 SHEET 1 AF 2 GLY A 208 TYR A 211 0 SHEET 2 AF 2 GLY A 197 ASN A 205 1 O ALA A 203 N ARG A 210 SSBOND 1 CYS A 45 CYS A 98 1555 1555 2.04 SSBOND 2 CYS A 147 CYS A 201 1555 1555 2.00 CISPEP 1 ASP A 50 PRO A 51 0 2.96 CISPEP 2 GLN A 85 PRO A 86 0 -11.70 CISPEP 3 THR A 89 PRO A 90 0 3.13 CISPEP 4 ASN A 152 PRO A 153 0 1.89 SITE 1 AC1 5 PRO A 30 VAL A 31 ILE A 44 HOH A2011 SITE 2 AC1 5 HOH A2015 SITE 1 AC2 7 ASN A 66 GLN A 67 ARG A 68 ARG A 88 SITE 2 AC2 7 ARG A 91 THR A 140 HOH A2254 CRYST1 48.710 48.710 145.910 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020530 0.011853 0.000000 0.00000 SCALE2 0.000000 0.023706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006854 0.00000