data_2YDY # _entry.id 2YDY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YDY pdb_00002ydy 10.2210/pdb2ydy/pdb PDBE EBI-47825 ? ? WWPDB D_1290047825 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-04-20 2 'Structure model' 1 1 2013-07-24 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2024-10-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' Other 9 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation_author 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_database_status 6 4 'Structure model' pdbx_entry_details 7 4 'Structure model' pdbx_modification_feature 8 4 'Structure model' struct_conn 9 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation_author.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_pdbx_database_status.status_code_sf' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YDY _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-03-25 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2YDX _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'CRYSTAL STRUCTURE OF HUMAN S-ADENOSYLMETHIONINE SYNTHETASE 2, BETA SUBUNIT' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yue, W.W.' 1 'Shafqat, N.' 2 'Muniz, J.R.C.' 3 'Pike, A.C.W.' 4 'Chaikuad, A.' 5 'Allerston, C.K.' 6 'Gileadi, O.' 7 'von Delft, F.' 8 'Kavanagh, K.L.' 9 'Arrowsmith, C.H.' 10 'Edwards, A.M.' 11 'Weigelt, J.' 12 'Bountra, C.' 13 'Oppermann, U.' 14 # _citation.id primary _citation.title ;Insight Into S-Adenosylmethionine Biosynthesis from the Crystal Structures of the Human Methionine Adenosyltransferase Catalytic and Regulatory Subunits. ; _citation.journal_abbrev Biochem.J. _citation.journal_volume 452 _citation.page_first 27 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM BIJOAK _citation.country UK _citation.journal_id_ISSN 0264-6021 _citation.journal_id_CSD 0043 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23425511 _citation.pdbx_database_id_DOI 10.1042/BJ20121580 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shafqat, N.' 1 ? primary 'Muniz, J.R.C.' 2 ? primary 'Pilka, E.S.' 3 ? primary 'Papagrigoriou, E.' 4 ? primary 'von Delft, F.' 5 ? primary 'Oppermann, U.' 6 ? primary 'Yue, W.W.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'METHIONINE ADENOSYLTRANSFERASE 2 SUBUNIT BETA' 35827.738 1 ? ? 'RESIDUES 17-323' ? 2 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 80 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;DTDP-4-KETO-6-DEOXY-D-GLUCOSE 4-REDUCTASE, METHIONINE ADENOSYLTRANSFERASE II BETA, MAT II BETA S-ADENOSYLMETHIONINE SYNTHETASE 2\,BETA SUBUNIT, MAT2B ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVV ENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRI PILYGEVEKLEESAVTV(MSE)FDKVQFSNKSAN(MSE)DHWQQRFPTHVKDVATVCRQLAEKR(MSE)LDPSIKGTFHW SGNEQ(MSE)TKYE(MSE)ACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETLGIGQRTPFRIGIKESLWPF LIDKRWRQTVFHAENLYFQ ; _entity_poly.pdbx_seq_one_letter_code_can ;MNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQP DAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILY GEVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFHWSGNEQMTKYEMACAIA DAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETLGIGQRTPFRIGIKESLWPFLIDKRWRQTVFHAENLYFQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'CHLORIDE ION' CL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ASN n 1 3 ARG n 1 4 ARG n 1 5 VAL n 1 6 LEU n 1 7 VAL n 1 8 THR n 1 9 GLY n 1 10 ALA n 1 11 THR n 1 12 GLY n 1 13 LEU n 1 14 LEU n 1 15 GLY n 1 16 ARG n 1 17 ALA n 1 18 VAL n 1 19 HIS n 1 20 LYS n 1 21 GLU n 1 22 PHE n 1 23 GLN n 1 24 GLN n 1 25 ASN n 1 26 ASN n 1 27 TRP n 1 28 HIS n 1 29 ALA n 1 30 VAL n 1 31 GLY n 1 32 CYS n 1 33 GLY n 1 34 PHE n 1 35 ARG n 1 36 ARG n 1 37 ALA n 1 38 ARG n 1 39 PRO n 1 40 LYS n 1 41 PHE n 1 42 GLU n 1 43 GLN n 1 44 VAL n 1 45 ASN n 1 46 LEU n 1 47 LEU n 1 48 ASP n 1 49 SER n 1 50 ASN n 1 51 ALA n 1 52 VAL n 1 53 HIS n 1 54 HIS n 1 55 ILE n 1 56 ILE n 1 57 HIS n 1 58 ASP n 1 59 PHE n 1 60 GLN n 1 61 PRO n 1 62 HIS n 1 63 VAL n 1 64 ILE n 1 65 VAL n 1 66 HIS n 1 67 CYS n 1 68 ALA n 1 69 ALA n 1 70 GLU n 1 71 ARG n 1 72 ARG n 1 73 PRO n 1 74 ASP n 1 75 VAL n 1 76 VAL n 1 77 GLU n 1 78 ASN n 1 79 GLN n 1 80 PRO n 1 81 ASP n 1 82 ALA n 1 83 ALA n 1 84 SER n 1 85 GLN n 1 86 LEU n 1 87 ASN n 1 88 VAL n 1 89 ASP n 1 90 ALA n 1 91 SER n 1 92 GLY n 1 93 ASN n 1 94 LEU n 1 95 ALA n 1 96 LYS n 1 97 GLU n 1 98 ALA n 1 99 ALA n 1 100 ALA n 1 101 VAL n 1 102 GLY n 1 103 ALA n 1 104 PHE n 1 105 LEU n 1 106 ILE n 1 107 TYR n 1 108 ILE n 1 109 SER n 1 110 SER n 1 111 ASP n 1 112 TYR n 1 113 VAL n 1 114 PHE n 1 115 ASP n 1 116 GLY n 1 117 THR n 1 118 ASN n 1 119 PRO n 1 120 PRO n 1 121 TYR n 1 122 ARG n 1 123 GLU n 1 124 GLU n 1 125 ASP n 1 126 ILE n 1 127 PRO n 1 128 ALA n 1 129 PRO n 1 130 LEU n 1 131 ASN n 1 132 LEU n 1 133 TYR n 1 134 GLY n 1 135 LYS n 1 136 THR n 1 137 LYS n 1 138 LEU n 1 139 ASP n 1 140 GLY n 1 141 GLU n 1 142 LYS n 1 143 ALA n 1 144 VAL n 1 145 LEU n 1 146 GLU n 1 147 ASN n 1 148 ASN n 1 149 LEU n 1 150 GLY n 1 151 ALA n 1 152 ALA n 1 153 VAL n 1 154 LEU n 1 155 ARG n 1 156 ILE n 1 157 PRO n 1 158 ILE n 1 159 LEU n 1 160 TYR n 1 161 GLY n 1 162 GLU n 1 163 VAL n 1 164 GLU n 1 165 LYS n 1 166 LEU n 1 167 GLU n 1 168 GLU n 1 169 SER n 1 170 ALA n 1 171 VAL n 1 172 THR n 1 173 VAL n 1 174 MSE n 1 175 PHE n 1 176 ASP n 1 177 LYS n 1 178 VAL n 1 179 GLN n 1 180 PHE n 1 181 SER n 1 182 ASN n 1 183 LYS n 1 184 SER n 1 185 ALA n 1 186 ASN n 1 187 MSE n 1 188 ASP n 1 189 HIS n 1 190 TRP n 1 191 GLN n 1 192 GLN n 1 193 ARG n 1 194 PHE n 1 195 PRO n 1 196 THR n 1 197 HIS n 1 198 VAL n 1 199 LYS n 1 200 ASP n 1 201 VAL n 1 202 ALA n 1 203 THR n 1 204 VAL n 1 205 CYS n 1 206 ARG n 1 207 GLN n 1 208 LEU n 1 209 ALA n 1 210 GLU n 1 211 LYS n 1 212 ARG n 1 213 MSE n 1 214 LEU n 1 215 ASP n 1 216 PRO n 1 217 SER n 1 218 ILE n 1 219 LYS n 1 220 GLY n 1 221 THR n 1 222 PHE n 1 223 HIS n 1 224 TRP n 1 225 SER n 1 226 GLY n 1 227 ASN n 1 228 GLU n 1 229 GLN n 1 230 MSE n 1 231 THR n 1 232 LYS n 1 233 TYR n 1 234 GLU n 1 235 MSE n 1 236 ALA n 1 237 CYS n 1 238 ALA n 1 239 ILE n 1 240 ALA n 1 241 ASP n 1 242 ALA n 1 243 PHE n 1 244 ASN n 1 245 LEU n 1 246 PRO n 1 247 SER n 1 248 SER n 1 249 HIS n 1 250 LEU n 1 251 ARG n 1 252 PRO n 1 253 ILE n 1 254 THR n 1 255 ASP n 1 256 SER n 1 257 PRO n 1 258 VAL n 1 259 LEU n 1 260 GLY n 1 261 ALA n 1 262 GLN n 1 263 ARG n 1 264 PRO n 1 265 ARG n 1 266 ASN n 1 267 ALA n 1 268 GLN n 1 269 LEU n 1 270 ASP n 1 271 CYS n 1 272 SER n 1 273 LYS n 1 274 LEU n 1 275 GLU n 1 276 THR n 1 277 LEU n 1 278 GLY n 1 279 ILE n 1 280 GLY n 1 281 GLN n 1 282 ARG n 1 283 THR n 1 284 PRO n 1 285 PHE n 1 286 ARG n 1 287 ILE n 1 288 GLY n 1 289 ILE n 1 290 LYS n 1 291 GLU n 1 292 SER n 1 293 LEU n 1 294 TRP n 1 295 PRO n 1 296 PHE n 1 297 LEU n 1 298 ILE n 1 299 ASP n 1 300 LYS n 1 301 ARG n 1 302 TRP n 1 303 ARG n 1 304 GLN n 1 305 THR n 1 306 VAL n 1 307 PHE n 1 308 HIS n 1 309 ALA n 1 310 GLU n 1 311 ASN n 1 312 LEU n 1 313 TYR n 1 314 PHE n 1 315 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant R3-PRARE2 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PNIC-CTHF _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 27 ? ? ? A . n A 1 2 ASN 2 28 28 ASN ASN A . n A 1 3 ARG 3 29 29 ARG ARG A . n A 1 4 ARG 4 30 30 ARG ARG A . n A 1 5 VAL 5 31 31 VAL VAL A . n A 1 6 LEU 6 32 32 LEU LEU A . n A 1 7 VAL 7 33 33 VAL VAL A . n A 1 8 THR 8 34 34 THR THR A . n A 1 9 GLY 9 35 35 GLY GLY A . n A 1 10 ALA 10 36 36 ALA ALA A . n A 1 11 THR 11 37 37 THR THR A . n A 1 12 GLY 12 38 38 GLY GLY A . n A 1 13 LEU 13 39 39 LEU LEU A . n A 1 14 LEU 14 40 40 LEU LEU A . n A 1 15 GLY 15 41 41 GLY GLY A . n A 1 16 ARG 16 42 42 ARG ARG A . n A 1 17 ALA 17 43 43 ALA ALA A . n A 1 18 VAL 18 44 44 VAL VAL A . n A 1 19 HIS 19 45 45 HIS HIS A . n A 1 20 LYS 20 46 46 LYS LYS A . n A 1 21 GLU 21 47 47 GLU GLU A . n A 1 22 PHE 22 48 48 PHE PHE A . n A 1 23 GLN 23 49 49 GLN GLN A . n A 1 24 GLN 24 50 50 GLN GLN A . n A 1 25 ASN 25 51 51 ASN ASN A . n A 1 26 ASN 26 52 52 ASN ASN A . n A 1 27 TRP 27 53 53 TRP TRP A . n A 1 28 HIS 28 54 54 HIS HIS A . n A 1 29 ALA 29 55 55 ALA ALA A . n A 1 30 VAL 30 56 56 VAL VAL A . n A 1 31 GLY 31 57 57 GLY GLY A . n A 1 32 CYS 32 58 58 CYS CYS A . n A 1 33 GLY 33 59 59 GLY GLY A . n A 1 34 PHE 34 60 ? ? ? A . n A 1 35 ARG 35 61 ? ? ? A . n A 1 36 ARG 36 62 ? ? ? A . n A 1 37 ALA 37 63 ? ? ? A . n A 1 38 ARG 38 64 ? ? ? A . n A 1 39 PRO 39 65 ? ? ? A . n A 1 40 LYS 40 66 ? ? ? A . n A 1 41 PHE 41 67 ? ? ? A . n A 1 42 GLU 42 68 ? ? ? A . n A 1 43 GLN 43 69 ? ? ? A . n A 1 44 VAL 44 70 ? ? ? A . n A 1 45 ASN 45 71 ? ? ? A . n A 1 46 LEU 46 72 ? ? ? A . n A 1 47 LEU 47 73 ? ? ? A . n A 1 48 ASP 48 74 ? ? ? A . n A 1 49 SER 49 75 ? ? ? A . n A 1 50 ASN 50 76 ? ? ? A . n A 1 51 ALA 51 77 ? ? ? A . n A 1 52 VAL 52 78 78 VAL VAL A . n A 1 53 HIS 53 79 79 HIS HIS A . n A 1 54 HIS 54 80 80 HIS HIS A . n A 1 55 ILE 55 81 81 ILE ILE A . n A 1 56 ILE 56 82 82 ILE ILE A . n A 1 57 HIS 57 83 83 HIS HIS A . n A 1 58 ASP 58 84 84 ASP ASP A . n A 1 59 PHE 59 85 85 PHE PHE A . n A 1 60 GLN 60 86 86 GLN GLN A . n A 1 61 PRO 61 87 87 PRO PRO A . n A 1 62 HIS 62 88 88 HIS HIS A . n A 1 63 VAL 63 89 89 VAL VAL A . n A 1 64 ILE 64 90 90 ILE ILE A . n A 1 65 VAL 65 91 91 VAL VAL A . n A 1 66 HIS 66 92 92 HIS HIS A . n A 1 67 CYS 67 93 93 CYS CYS A . n A 1 68 ALA 68 94 94 ALA ALA A . n A 1 69 ALA 69 95 ? ? ? A . n A 1 70 GLU 70 96 ? ? ? A . n A 1 71 ARG 71 97 ? ? ? A . n A 1 72 ARG 72 98 ? ? ? A . n A 1 73 PRO 73 99 ? ? ? A . n A 1 74 ASP 74 100 ? ? ? A . n A 1 75 VAL 75 101 ? ? ? A . n A 1 76 VAL 76 102 ? ? ? A . n A 1 77 GLU 77 103 ? ? ? A . n A 1 78 ASN 78 104 ? ? ? A . n A 1 79 GLN 79 105 ? ? ? A . n A 1 80 PRO 80 106 ? ? ? A . n A 1 81 ASP 81 107 ? ? ? A . n A 1 82 ALA 82 108 ? ? ? A . n A 1 83 ALA 83 109 ? ? ? A . n A 1 84 SER 84 110 ? ? ? A . n A 1 85 GLN 85 111 ? ? ? A . n A 1 86 LEU 86 112 ? ? ? A . n A 1 87 ASN 87 113 ? ? ? A . n A 1 88 VAL 88 114 114 VAL VAL A . n A 1 89 ASP 89 115 115 ASP ASP A . n A 1 90 ALA 90 116 116 ALA ALA A . n A 1 91 SER 91 117 117 SER SER A . n A 1 92 GLY 92 118 118 GLY GLY A . n A 1 93 ASN 93 119 119 ASN ASN A . n A 1 94 LEU 94 120 120 LEU LEU A . n A 1 95 ALA 95 121 121 ALA ALA A . n A 1 96 LYS 96 122 122 LYS LYS A . n A 1 97 GLU 97 123 123 GLU GLU A . n A 1 98 ALA 98 124 124 ALA ALA A . n A 1 99 ALA 99 125 125 ALA ALA A . n A 1 100 ALA 100 126 126 ALA ALA A . n A 1 101 VAL 101 127 127 VAL VAL A . n A 1 102 GLY 102 128 128 GLY GLY A . n A 1 103 ALA 103 129 129 ALA ALA A . n A 1 104 PHE 104 130 130 PHE PHE A . n A 1 105 LEU 105 131 131 LEU LEU A . n A 1 106 ILE 106 132 132 ILE ILE A . n A 1 107 TYR 107 133 133 TYR TYR A . n A 1 108 ILE 108 134 134 ILE ILE A . n A 1 109 SER 109 135 135 SER SER A . n A 1 110 SER 110 136 136 SER SER A . n A 1 111 ASP 111 137 137 ASP ASP A . n A 1 112 TYR 112 138 138 TYR TYR A . n A 1 113 VAL 113 139 139 VAL VAL A . n A 1 114 PHE 114 140 140 PHE PHE A . n A 1 115 ASP 115 141 141 ASP ASP A . n A 1 116 GLY 116 142 142 GLY GLY A . n A 1 117 THR 117 143 143 THR THR A . n A 1 118 ASN 118 144 144 ASN ASN A . n A 1 119 PRO 119 145 145 PRO PRO A . n A 1 120 PRO 120 146 146 PRO PRO A . n A 1 121 TYR 121 147 147 TYR TYR A . n A 1 122 ARG 122 148 148 ARG ARG A . n A 1 123 GLU 123 149 149 GLU GLU A . n A 1 124 GLU 124 150 150 GLU GLU A . n A 1 125 ASP 125 151 151 ASP ASP A . n A 1 126 ILE 126 152 152 ILE ILE A . n A 1 127 PRO 127 153 153 PRO PRO A . n A 1 128 ALA 128 154 154 ALA ALA A . n A 1 129 PRO 129 155 155 PRO PRO A . n A 1 130 LEU 130 156 156 LEU LEU A . n A 1 131 ASN 131 157 157 ASN ASN A . n A 1 132 LEU 132 158 158 LEU LEU A . n A 1 133 TYR 133 159 159 TYR TYR A . n A 1 134 GLY 134 160 160 GLY GLY A . n A 1 135 LYS 135 161 161 LYS LYS A . n A 1 136 THR 136 162 162 THR THR A . n A 1 137 LYS 137 163 163 LYS LYS A . n A 1 138 LEU 138 164 164 LEU LEU A . n A 1 139 ASP 139 165 165 ASP ASP A . n A 1 140 GLY 140 166 166 GLY GLY A . n A 1 141 GLU 141 167 167 GLU GLU A . n A 1 142 LYS 142 168 168 LYS LYS A . n A 1 143 ALA 143 169 169 ALA ALA A . n A 1 144 VAL 144 170 170 VAL VAL A . n A 1 145 LEU 145 171 171 LEU LEU A . n A 1 146 GLU 146 172 172 GLU GLU A . n A 1 147 ASN 147 173 173 ASN ASN A . n A 1 148 ASN 148 174 174 ASN ASN A . n A 1 149 LEU 149 175 175 LEU LEU A . n A 1 150 GLY 150 176 176 GLY GLY A . n A 1 151 ALA 151 177 177 ALA ALA A . n A 1 152 ALA 152 178 178 ALA ALA A . n A 1 153 VAL 153 179 179 VAL VAL A . n A 1 154 LEU 154 180 180 LEU LEU A . n A 1 155 ARG 155 181 181 ARG ARG A . n A 1 156 ILE 156 182 182 ILE ILE A . n A 1 157 PRO 157 183 183 PRO PRO A . n A 1 158 ILE 158 184 184 ILE ILE A . n A 1 159 LEU 159 185 185 LEU LEU A . n A 1 160 TYR 160 186 186 TYR TYR A . n A 1 161 GLY 161 187 187 GLY GLY A . n A 1 162 GLU 162 188 188 GLU GLU A . n A 1 163 VAL 163 189 189 VAL VAL A . n A 1 164 GLU 164 190 190 GLU GLU A . n A 1 165 LYS 165 191 191 LYS LYS A . n A 1 166 LEU 166 192 192 LEU LEU A . n A 1 167 GLU 167 193 193 GLU GLU A . n A 1 168 GLU 168 194 194 GLU GLU A . n A 1 169 SER 169 195 195 SER SER A . n A 1 170 ALA 170 196 196 ALA ALA A . n A 1 171 VAL 171 197 197 VAL VAL A . n A 1 172 THR 172 198 198 THR THR A . n A 1 173 VAL 173 199 199 VAL VAL A . n A 1 174 MSE 174 200 200 MSE MSE A . n A 1 175 PHE 175 201 201 PHE PHE A . n A 1 176 ASP 176 202 202 ASP ASP A . n A 1 177 LYS 177 203 203 LYS LYS A . n A 1 178 VAL 178 204 204 VAL VAL A . n A 1 179 GLN 179 205 205 GLN GLN A . n A 1 180 PHE 180 206 206 PHE PHE A . n A 1 181 SER 181 207 207 SER SER A . n A 1 182 ASN 182 208 208 ASN ASN A . n A 1 183 LYS 183 209 209 LYS LYS A . n A 1 184 SER 184 210 210 SER SER A . n A 1 185 ALA 185 211 211 ALA ALA A . n A 1 186 ASN 186 212 212 ASN ASN A . n A 1 187 MSE 187 213 213 MSE MSE A . n A 1 188 ASP 188 214 214 ASP ASP A . n A 1 189 HIS 189 215 215 HIS HIS A . n A 1 190 TRP 190 216 216 TRP TRP A . n A 1 191 GLN 191 217 217 GLN GLN A . n A 1 192 GLN 192 218 218 GLN GLN A . n A 1 193 ARG 193 219 219 ARG ARG A . n A 1 194 PHE 194 220 220 PHE PHE A . n A 1 195 PRO 195 221 221 PRO PRO A . n A 1 196 THR 196 222 222 THR THR A . n A 1 197 HIS 197 223 223 HIS HIS A . n A 1 198 VAL 198 224 224 VAL VAL A . n A 1 199 LYS 199 225 225 LYS LYS A . n A 1 200 ASP 200 226 226 ASP ASP A . n A 1 201 VAL 201 227 227 VAL VAL A . n A 1 202 ALA 202 228 228 ALA ALA A . n A 1 203 THR 203 229 229 THR THR A . n A 1 204 VAL 204 230 230 VAL VAL A . n A 1 205 CYS 205 231 231 CYS CYS A . n A 1 206 ARG 206 232 232 ARG ARG A . n A 1 207 GLN 207 233 233 GLN GLN A . n A 1 208 LEU 208 234 234 LEU LEU A . n A 1 209 ALA 209 235 235 ALA ALA A . n A 1 210 GLU 210 236 236 GLU GLU A . n A 1 211 LYS 211 237 237 LYS LYS A . n A 1 212 ARG 212 238 238 ARG ARG A . n A 1 213 MSE 213 239 239 MSE MSE A . n A 1 214 LEU 214 240 240 LEU LEU A . n A 1 215 ASP 215 241 241 ASP ASP A . n A 1 216 PRO 216 242 242 PRO PRO A . n A 1 217 SER 217 243 243 SER SER A . n A 1 218 ILE 218 244 244 ILE ILE A . n A 1 219 LYS 219 245 245 LYS LYS A . n A 1 220 GLY 220 246 246 GLY GLY A . n A 1 221 THR 221 247 247 THR THR A . n A 1 222 PHE 222 248 248 PHE PHE A . n A 1 223 HIS 223 249 249 HIS HIS A . n A 1 224 TRP 224 250 250 TRP TRP A . n A 1 225 SER 225 251 251 SER SER A . n A 1 226 GLY 226 252 252 GLY GLY A . n A 1 227 ASN 227 253 253 ASN ASN A . n A 1 228 GLU 228 254 254 GLU GLU A . n A 1 229 GLN 229 255 255 GLN GLN A . n A 1 230 MSE 230 256 256 MSE MSE A . n A 1 231 THR 231 257 257 THR THR A . n A 1 232 LYS 232 258 258 LYS LYS A . n A 1 233 TYR 233 259 259 TYR TYR A . n A 1 234 GLU 234 260 260 GLU GLU A . n A 1 235 MSE 235 261 261 MSE MSE A . n A 1 236 ALA 236 262 262 ALA ALA A . n A 1 237 CYS 237 263 263 CYS CYS A . n A 1 238 ALA 238 264 264 ALA ALA A . n A 1 239 ILE 239 265 265 ILE ILE A . n A 1 240 ALA 240 266 266 ALA ALA A . n A 1 241 ASP 241 267 267 ASP ASP A . n A 1 242 ALA 242 268 268 ALA ALA A . n A 1 243 PHE 243 269 269 PHE PHE A . n A 1 244 ASN 244 270 270 ASN ASN A . n A 1 245 LEU 245 271 271 LEU LEU A . n A 1 246 PRO 246 272 272 PRO PRO A . n A 1 247 SER 247 273 273 SER SER A . n A 1 248 SER 248 274 274 SER SER A . n A 1 249 HIS 249 275 275 HIS HIS A . n A 1 250 LEU 250 276 276 LEU LEU A . n A 1 251 ARG 251 277 277 ARG ARG A . n A 1 252 PRO 252 278 278 PRO PRO A . n A 1 253 ILE 253 279 279 ILE ILE A . n A 1 254 THR 254 280 280 THR THR A . n A 1 255 ASP 255 281 281 ASP ASP A . n A 1 256 SER 256 282 282 SER SER A . n A 1 257 PRO 257 283 283 PRO PRO A . n A 1 258 VAL 258 284 284 VAL VAL A . n A 1 259 LEU 259 285 285 LEU LEU A . n A 1 260 GLY 260 286 286 GLY GLY A . n A 1 261 ALA 261 287 287 ALA ALA A . n A 1 262 GLN 262 288 288 GLN GLN A . n A 1 263 ARG 263 289 289 ARG ARG A . n A 1 264 PRO 264 290 290 PRO PRO A . n A 1 265 ARG 265 291 291 ARG ARG A . n A 1 266 ASN 266 292 292 ASN ASN A . n A 1 267 ALA 267 293 293 ALA ALA A . n A 1 268 GLN 268 294 294 GLN GLN A . n A 1 269 LEU 269 295 295 LEU LEU A . n A 1 270 ASP 270 296 296 ASP ASP A . n A 1 271 CYS 271 297 297 CYS CYS A . n A 1 272 SER 272 298 298 SER SER A . n A 1 273 LYS 273 299 299 LYS LYS A . n A 1 274 LEU 274 300 300 LEU LEU A . n A 1 275 GLU 275 301 301 GLU GLU A . n A 1 276 THR 276 302 302 THR THR A . n A 1 277 LEU 277 303 303 LEU LEU A . n A 1 278 GLY 278 304 304 GLY GLY A . n A 1 279 ILE 279 305 305 ILE ILE A . n A 1 280 GLY 280 306 306 GLY GLY A . n A 1 281 GLN 281 307 307 GLN GLN A . n A 1 282 ARG 282 308 308 ARG ARG A . n A 1 283 THR 283 309 309 THR THR A . n A 1 284 PRO 284 310 310 PRO PRO A . n A 1 285 PHE 285 311 311 PHE PHE A . n A 1 286 ARG 286 312 312 ARG ARG A . n A 1 287 ILE 287 313 313 ILE ILE A . n A 1 288 GLY 288 314 314 GLY GLY A . n A 1 289 ILE 289 315 315 ILE ILE A . n A 1 290 LYS 290 316 316 LYS LYS A . n A 1 291 GLU 291 317 317 GLU GLU A . n A 1 292 SER 292 318 318 SER SER A . n A 1 293 LEU 293 319 319 LEU LEU A . n A 1 294 TRP 294 320 320 TRP TRP A . n A 1 295 PRO 295 321 321 PRO PRO A . n A 1 296 PHE 296 322 322 PHE PHE A . n A 1 297 LEU 297 323 323 LEU LEU A . n A 1 298 ILE 298 324 324 ILE ILE A . n A 1 299 ASP 299 325 ? ? ? A . n A 1 300 LYS 300 326 ? ? ? A . n A 1 301 ARG 301 327 ? ? ? A . n A 1 302 TRP 302 328 ? ? ? A . n A 1 303 ARG 303 329 ? ? ? A . n A 1 304 GLN 304 330 ? ? ? A . n A 1 305 THR 305 331 ? ? ? A . n A 1 306 VAL 306 332 ? ? ? A . n A 1 307 PHE 307 333 ? ? ? A . n A 1 308 HIS 308 334 ? ? ? A . n A 1 309 ALA 309 335 ? ? ? A . n A 1 310 GLU 310 336 ? ? ? A . n A 1 311 ASN 311 337 ? ? ? A . n A 1 312 LEU 312 338 ? ? ? A . n A 1 313 TYR 313 339 ? ? ? A . n A 1 314 PHE 314 340 ? ? ? A . n A 1 315 GLN 315 341 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1325 1325 SO4 SO4 A . C 2 SO4 1 1326 1326 SO4 SO4 A . D 2 SO4 1 1327 1327 SO4 SO4 A . E 3 CL 1 1328 1328 CL CL A . F 4 HOH 1 2001 2001 HOH HOH A . F 4 HOH 2 2002 2002 HOH HOH A . F 4 HOH 3 2003 2003 HOH HOH A . F 4 HOH 4 2004 2004 HOH HOH A . F 4 HOH 5 2005 2005 HOH HOH A . F 4 HOH 6 2006 2006 HOH HOH A . F 4 HOH 7 2007 2007 HOH HOH A . F 4 HOH 8 2008 2008 HOH HOH A . F 4 HOH 9 2009 2009 HOH HOH A . F 4 HOH 10 2010 2010 HOH HOH A . F 4 HOH 11 2011 2011 HOH HOH A . F 4 HOH 12 2012 2012 HOH HOH A . F 4 HOH 13 2013 2013 HOH HOH A . F 4 HOH 14 2014 2014 HOH HOH A . F 4 HOH 15 2015 2015 HOH HOH A . F 4 HOH 16 2016 2016 HOH HOH A . F 4 HOH 17 2017 2017 HOH HOH A . F 4 HOH 18 2018 2018 HOH HOH A . F 4 HOH 19 2019 2019 HOH HOH A . F 4 HOH 20 2020 2020 HOH HOH A . F 4 HOH 21 2021 2021 HOH HOH A . F 4 HOH 22 2022 2022 HOH HOH A . F 4 HOH 23 2023 2023 HOH HOH A . F 4 HOH 24 2024 2024 HOH HOH A . F 4 HOH 25 2025 2025 HOH HOH A . F 4 HOH 26 2026 2026 HOH HOH A . F 4 HOH 27 2027 2027 HOH HOH A . F 4 HOH 28 2028 2028 HOH HOH A . F 4 HOH 29 2029 2029 HOH HOH A . F 4 HOH 30 2030 2030 HOH HOH A . F 4 HOH 31 2031 2031 HOH HOH A . F 4 HOH 32 2032 2032 HOH HOH A . F 4 HOH 33 2033 2033 HOH HOH A . F 4 HOH 34 2034 2034 HOH HOH A . F 4 HOH 35 2035 2035 HOH HOH A . F 4 HOH 36 2036 2036 HOH HOH A . F 4 HOH 37 2037 2037 HOH HOH A . F 4 HOH 38 2038 2038 HOH HOH A . F 4 HOH 39 2039 2039 HOH HOH A . F 4 HOH 40 2040 2040 HOH HOH A . F 4 HOH 41 2041 2041 HOH HOH A . F 4 HOH 42 2042 2042 HOH HOH A . F 4 HOH 43 2043 2043 HOH HOH A . F 4 HOH 44 2044 2044 HOH HOH A . F 4 HOH 45 2045 2045 HOH HOH A . F 4 HOH 46 2046 2046 HOH HOH A . F 4 HOH 47 2047 2047 HOH HOH A . F 4 HOH 48 2048 2048 HOH HOH A . F 4 HOH 49 2049 2049 HOH HOH A . F 4 HOH 50 2050 2050 HOH HOH A . F 4 HOH 51 2051 2051 HOH HOH A . F 4 HOH 52 2052 2052 HOH HOH A . F 4 HOH 53 2053 2053 HOH HOH A . F 4 HOH 54 2054 2054 HOH HOH A . F 4 HOH 55 2055 2055 HOH HOH A . F 4 HOH 56 2056 2056 HOH HOH A . F 4 HOH 57 2057 2057 HOH HOH A . F 4 HOH 58 2058 2058 HOH HOH A . F 4 HOH 59 2059 2059 HOH HOH A . F 4 HOH 60 2060 2060 HOH HOH A . F 4 HOH 61 2061 2061 HOH HOH A . F 4 HOH 62 2062 2062 HOH HOH A . F 4 HOH 63 2063 2063 HOH HOH A . F 4 HOH 64 2064 2064 HOH HOH A . F 4 HOH 65 2065 2065 HOH HOH A . F 4 HOH 66 2066 2066 HOH HOH A . F 4 HOH 67 2067 2067 HOH HOH A . F 4 HOH 68 2068 2068 HOH HOH A . F 4 HOH 69 2069 2069 HOH HOH A . F 4 HOH 70 2070 2070 HOH HOH A . F 4 HOH 71 2071 2071 HOH HOH A . F 4 HOH 72 2072 2072 HOH HOH A . F 4 HOH 73 2073 2073 HOH HOH A . F 4 HOH 74 2074 2074 HOH HOH A . F 4 HOH 75 2075 2075 HOH HOH A . F 4 HOH 76 2076 2076 HOH HOH A . F 4 HOH 77 2077 2077 HOH HOH A . F 4 HOH 78 2078 2078 HOH HOH A . F 4 HOH 79 2079 2079 HOH HOH A . F 4 HOH 80 2080 2080 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A VAL 78 ? CG1 ? A VAL 52 CG1 2 1 Y 1 A VAL 78 ? CG2 ? A VAL 52 CG2 3 1 Y 1 A HIS 79 ? CG ? A HIS 53 CG 4 1 Y 1 A HIS 79 ? ND1 ? A HIS 53 ND1 5 1 Y 1 A HIS 79 ? CD2 ? A HIS 53 CD2 6 1 Y 1 A HIS 79 ? CE1 ? A HIS 53 CE1 7 1 Y 1 A HIS 79 ? NE2 ? A HIS 53 NE2 8 1 Y 1 A HIS 80 ? CG ? A HIS 54 CG 9 1 Y 1 A HIS 80 ? ND1 ? A HIS 54 ND1 10 1 Y 1 A HIS 80 ? CD2 ? A HIS 54 CD2 11 1 Y 1 A HIS 80 ? CE1 ? A HIS 54 CE1 12 1 Y 1 A HIS 80 ? NE2 ? A HIS 54 NE2 13 1 Y 1 A VAL 114 ? CG1 ? A VAL 88 CG1 14 1 Y 1 A VAL 114 ? CG2 ? A VAL 88 CG2 15 1 Y 1 A ASP 115 ? CG ? A ASP 89 CG 16 1 Y 1 A ASP 115 ? OD1 ? A ASP 89 OD1 17 1 Y 1 A ASP 115 ? OD2 ? A ASP 89 OD2 18 1 Y 1 A LYS 161 ? CD ? A LYS 135 CD 19 1 Y 1 A LYS 161 ? CE ? A LYS 135 CE 20 1 Y 1 A LYS 161 ? NZ ? A LYS 135 NZ 21 1 Y 1 A LYS 168 ? CE ? A LYS 142 CE 22 1 Y 1 A LYS 168 ? NZ ? A LYS 142 NZ 23 1 Y 1 A LYS 209 ? CG ? A LYS 183 CG 24 1 Y 1 A LYS 209 ? CD ? A LYS 183 CD 25 1 Y 1 A LYS 209 ? CE ? A LYS 183 CE 26 1 Y 1 A LYS 209 ? NZ ? A LYS 183 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BUSTER refinement 2.8.0 ? 1 XDS 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 SHARP phasing . ? 4 # _cell.entry_id 2YDY _cell.length_a 40.980 _cell.length_b 111.770 _cell.length_c 123.120 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YDY _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # _exptl.entry_id 2YDY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.5 _exptl_crystal.density_percent_sol 50.81 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2010-12-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_wavelength 0.9795 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2YDY _reflns.observed_criterion_sigma_I 2.4 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 61.61 _reflns.d_resolution_high 2.17 _reflns.number_obs 15419 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.70 _reflns.B_iso_Wilson_estimate 32.78 _reflns.pdbx_redundancy 6.6 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.17 _reflns_shell.d_res_low 2.29 _reflns_shell.percent_possible_all 98.9 _reflns_shell.Rmerge_I_obs 0.91 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.40 _reflns_shell.pdbx_redundancy 6.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2YDY _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 12589 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.07 _refine.ls_d_res_high 2.25 _refine.ls_percent_reflns_obs 99.8 _refine.ls_R_factor_obs 0.1773 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1751 _refine.ls_R_factor_R_free 0.2175 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 641 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9315 _refine.correlation_coeff_Fo_to_Fc_free 0.9141 _refine.B_iso_mean 33.60 _refine.aniso_B[1][1] 7.5677 _refine.aniso_B[2][2] 3.1742 _refine.aniso_B[3][3] -10.7419 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;IDEAL-DIST CONTACT TERM CONTACT SETUP. RESIDUE TYPES WITHOUT CCP4 ATOM TYPE IN LIBRARY=SO4 CL. NUMBER OF ATOMS WITH PROPER CCP4 ATOM TYPE=2099. NUMBER WITH APPROX DEFAULT CCP4 ATOM TYPE=15. NUMBER TREATED BY BAD NON-BONDED CONTACTS=1. ; _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 2YDY _refine_analyze.Luzzati_coordinate_error_obs 0.250 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2010 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 80 _refine_hist.number_atoms_total 2106 _refine_hist.d_res_high 2.25 _refine_hist.d_res_low 28.07 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.009 ? 2.00 2076 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 0.97 ? 2.00 2823 'X-RAY DIFFRACTION' HARMONIC t_dihedral_angle_d ? ? 2.00 946 'X-RAY DIFFRACTION' SINUSOIDAL t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? 2.00 51 'X-RAY DIFFRACTION' HARMONIC t_gen_planes ? ? 5.00 304 'X-RAY DIFFRACTION' HARMONIC t_it ? ? 20.00 2076 'X-RAY DIFFRACTION' HARMONIC t_nbd ? ? 5.00 0 'X-RAY DIFFRACTION' SEMIHARMONIC t_omega_torsion 2.79 ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion 2.78 ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? 5.00 272 'X-RAY DIFFRACTION' SEMIHARMONIC t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? 4.00 2416 'X-RAY DIFFRACTION' SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.25 _refine_ls_shell.d_res_low 2.46 _refine_ls_shell.number_reflns_R_work 2754 _refine_ls_shell.R_factor_R_work 0.1846 _refine_ls_shell.percent_reflns_obs 99.8 _refine_ls_shell.R_factor_R_free 0.2214 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 5.52 _refine_ls_shell.number_reflns_R_free 161 _refine_ls_shell.number_reflns_all 2915 _refine_ls_shell.R_factor_all 0.1867 # _database_PDB_matrix.entry_id 2YDY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2YDY _struct.title 'Crystal structure of human S-adenosylmethionine synthetase 2, beta subunit in Orthorhombic crystal form' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YDY _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text OXIDOREDUCTASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MAT2B_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q9NZL9 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YDY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 308 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9NZL9 _struct_ref_seq.db_align_beg 17 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 323 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 28 _struct_ref_seq.pdbx_auth_seq_align_end 334 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YDY MSE A 1 ? UNP Q9NZL9 ? ? 'expression tag' 27 1 1 2YDY ALA A 309 ? UNP Q9NZL9 ? ? 'expression tag' 335 2 1 2YDY GLU A 310 ? UNP Q9NZL9 ? ? 'expression tag' 336 3 1 2YDY ASN A 311 ? UNP Q9NZL9 ? ? 'expression tag' 337 4 1 2YDY LEU A 312 ? UNP Q9NZL9 ? ? 'expression tag' 338 5 1 2YDY TYR A 313 ? UNP Q9NZL9 ? ? 'expression tag' 339 6 1 2YDY PHE A 314 ? UNP Q9NZL9 ? ? 'expression tag' 340 7 1 2YDY GLN A 315 ? UNP Q9NZL9 ? ? 'expression tag' 341 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 12 ? GLN A 24 ? GLY A 38 GLN A 50 1 ? 13 HELX_P HELX_P2 2 VAL A 52 ? GLN A 60 ? VAL A 78 GLN A 86 1 ? 9 HELX_P HELX_P3 3 VAL A 88 ? VAL A 101 ? VAL A 114 VAL A 127 1 ? 14 HELX_P HELX_P4 4 TYR A 112 ? PHE A 114 ? TYR A 138 PHE A 140 5 ? 3 HELX_P HELX_P5 5 ASN A 131 ? ASN A 148 ? ASN A 157 ASN A 174 1 ? 18 HELX_P HELX_P6 6 LYS A 165 ? SER A 169 ? LYS A 191 SER A 195 5 ? 5 HELX_P HELX_P7 7 VAL A 171 ? VAL A 173 ? VAL A 197 VAL A 199 5 ? 3 HELX_P HELX_P8 8 MSE A 174 ? PHE A 180 ? MSE A 200 PHE A 206 1 ? 7 HELX_P HELX_P9 9 VAL A 198 ? LEU A 214 ? VAL A 224 LEU A 240 1 ? 17 HELX_P HELX_P10 10 THR A 231 ? PHE A 243 ? THR A 257 PHE A 269 1 ? 13 HELX_P HELX_P11 11 CYS A 271 ? LEU A 277 ? CYS A 297 LEU A 303 1 ? 7 HELX_P HELX_P12 12 PRO A 284 ? TRP A 294 ? PRO A 310 TRP A 320 1 ? 11 HELX_P HELX_P13 13 PRO A 295 ? LEU A 297 ? PRO A 321 LEU A 323 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A VAL 173 C ? ? ? 1_555 A MSE 174 N ? ? A VAL 199 A MSE 200 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale2 covale both ? A MSE 174 C ? ? ? 1_555 A PHE 175 N ? ? A MSE 200 A PHE 201 1_555 ? ? ? ? ? ? ? 1.361 ? ? covale3 covale both ? A ASN 186 C ? ? ? 1_555 A MSE 187 N ? ? A ASN 212 A MSE 213 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale4 covale both ? A MSE 187 C ? ? ? 1_555 A ASP 188 N ? ? A MSE 213 A ASP 214 1_555 ? ? ? ? ? ? ? 1.364 ? ? covale5 covale both ? A ARG 212 C ? ? ? 1_555 A MSE 213 N ? ? A ARG 238 A MSE 239 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale6 covale both ? A MSE 213 C ? ? ? 1_555 A LEU 214 N ? ? A MSE 239 A LEU 240 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale7 covale both ? A GLN 229 C ? ? ? 1_555 A MSE 230 N ? ? A GLN 255 A MSE 256 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale8 covale both ? A MSE 230 C ? ? ? 1_555 A THR 231 N ? ? A MSE 256 A THR 257 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale9 covale both ? A GLU 234 C ? ? ? 1_555 A MSE 235 N ? ? A GLU 260 A MSE 261 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale10 covale both ? A MSE 235 C ? ? ? 1_555 A ALA 236 N ? ? A MSE 261 A ALA 262 1_555 ? ? ? ? ? ? ? 1.355 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 174 ? . . . . MSE A 200 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 187 ? . . . . MSE A 213 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE A 213 ? . . . . MSE A 239 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MSE A 230 ? . . . . MSE A 256 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 5 MSE A 235 ? . . . . MSE A 261 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 119 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 145 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 120 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 146 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.32 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 6 ? AB ? 2 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel AA 5 6 ? parallel AB 1 2 ? parallel AC 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 HIS A 28 ? CYS A 32 ? HIS A 54 CYS A 58 AA 2 ARG A 4 ? THR A 8 ? ARG A 30 THR A 34 AA 3 VAL A 63 ? HIS A 66 ? VAL A 89 HIS A 92 AA 4 PHE A 104 ? SER A 110 ? PHE A 130 SER A 136 AA 5 ALA A 152 ? ILE A 156 ? ALA A 178 ILE A 182 AA 6 GLY A 220 ? HIS A 223 ? GLY A 246 HIS A 249 AB 1 LEU A 159 ? TYR A 160 ? LEU A 185 TYR A 186 AB 2 THR A 196 ? HIS A 197 ? THR A 222 HIS A 223 AC 1 ALA A 185 ? ASP A 188 ? ALA A 211 ASP A 214 AC 2 LEU A 250 ? ILE A 253 ? LEU A 276 ILE A 279 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 30 ? N VAL A 56 O VAL A 5 ? O VAL A 31 AA 2 3 N LEU A 6 ? N LEU A 32 O VAL A 63 ? O VAL A 89 AA 3 4 N ILE A 64 ? N ILE A 90 O PHE A 104 ? O PHE A 130 AA 4 5 N TYR A 107 ? N TYR A 133 O ALA A 152 ? O ALA A 178 AA 5 6 N VAL A 153 ? N VAL A 179 O GLY A 220 ? O GLY A 246 AB 1 2 N TYR A 160 ? N TYR A 186 O THR A 196 ? O THR A 222 AC 1 2 N MSE A 187 ? N MSE A 213 O ARG A 251 ? O ARG A 277 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 1325 ? 3 'BINDING SITE FOR RESIDUE SO4 A 1325' AC2 Software A SO4 1326 ? 2 'BINDING SITE FOR RESIDUE SO4 A 1326' AC3 Software A SO4 1327 ? 4 'BINDING SITE FOR RESIDUE SO4 A 1327' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLN A 229 ? GLN A 255 . ? 1_555 ? 2 AC1 3 ARG A 265 ? ARG A 291 . ? 1_555 ? 3 AC1 3 ASN A 266 ? ASN A 292 . ? 1_555 ? 4 AC2 2 ARG A 206 ? ARG A 232 . ? 1_555 ? 5 AC2 2 GLN A 207 ? GLN A 233 . ? 1_555 ? 6 AC3 4 TYR A 112 ? TYR A 138 . ? 1_555 ? 7 AC3 4 ALA A 170 ? ALA A 196 . ? 1_555 ? 8 AC3 4 ARG A 193 ? ARG A 219 . ? 1_555 ? 9 AC3 4 LYS A 232 ? LYS A 258 . ? 1_555 ? # _pdbx_entry_details.entry_id 2YDY _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 135 ? ? -122.80 -169.47 2 1 TYR A 138 ? ? -69.94 3.63 3 1 PRO A 183 ? ? -93.81 -153.06 4 1 ALA A 293 ? ? -90.87 36.86 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 174 A MSE 200 ? MET SELENOMETHIONINE 2 A MSE 187 A MSE 213 ? MET SELENOMETHIONINE 3 A MSE 213 A MSE 239 ? MET SELENOMETHIONINE 4 A MSE 230 A MSE 256 ? MET SELENOMETHIONINE 5 A MSE 235 A MSE 261 ? MET SELENOMETHIONINE # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id CL _pdbx_struct_special_symmetry.auth_seq_id 1328 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id CL _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -17.7109 -19.8354 4.8810 -0.0608 -0.1319 0.0794 -0.0092 -0.0362 -0.0257 0.0005 3.1999 0.8672 2.8468 2.1433 -0.6620 0.0097 0.0222 -0.1904 -0.1058 0.1451 0.1232 0.2067 -0.1814 -0.1547 'X-RAY DIFFRACTION' 2 ? refined -14.8985 -26.9276 4.6460 -0.0123 -0.1605 0.0317 0.0204 -0.0375 -0.0765 3.5364 4.6618 1.0606 0.4361 1.2198 2.7280 0.0265 0.1153 -0.3759 0.0020 -0.0257 0.0279 0.2424 -0.1655 -0.0008 'X-RAY DIFFRACTION' 3 ? refined -9.6104 -27.6211 16.7440 0.2954 -0.2005 0.1498 0.0537 -0.0657 0.0640 1.6035 2.1419 3.7167 2.8857 0.9991 -2.0764 0.0346 0.0689 -0.1161 0.0517 -0.0012 0.0152 0.0555 0.0277 -0.0333 'X-RAY DIFFRACTION' 4 ? refined -5.5082 -10.2073 21.0202 -0.0573 -0.0490 -0.0107 0.0055 -0.0094 0.0173 2.6067 2.0805 1.0800 -0.5842 -0.2637 -0.0591 0.0352 -0.3205 -0.2248 0.3070 0.0489 -0.1017 0.2557 0.2572 -0.0841 'X-RAY DIFFRACTION' 5 ? refined -21.0781 -5.6405 14.9853 -0.0750 -0.0970 0.0620 -0.0336 0.0291 -0.0192 5.4287 1.4676 1.3664 -2.3465 0.6826 -0.2280 0.0901 -0.2115 -0.0527 0.1385 0.0293 -0.0463 0.0466 -0.0610 -0.1194 'X-RAY DIFFRACTION' 6 ? refined -14.6068 -0.6811 12.8514 -0.0367 -0.0747 -0.0108 0.0070 0.0074 -0.0115 0.5407 0.6708 0.8932 0.4782 0.2163 0.0083 -0.0111 -0.0328 -0.0231 0.0474 0.0801 0.0298 -0.0937 0.1156 -0.0690 'X-RAY DIFFRACTION' 7 ? refined -10.6996 1.2732 26.0404 -0.0050 -0.0293 0.0275 -0.0269 -0.0148 -0.0579 0.0264 0.1014 0.5257 -0.5856 0.4563 -0.0633 -0.0011 -0.1139 -0.0368 0.0314 0.0083 0.0078 -0.0104 0.0050 -0.0072 'X-RAY DIFFRACTION' 8 ? refined -15.4651 -1.6366 5.8918 -0.0387 0.0236 0.0088 -0.0019 0.0043 -0.0103 0.0454 0.9873 0.6245 -0.2720 0.4203 0.2982 -0.0204 0.1535 0.1016 -0.1671 0.0727 -0.0994 -0.1711 0.0412 -0.0523 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 28 - 48)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 49 - 92)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 93 - 128)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 129 - 170)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 171 - 211)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESIDUE 288 - 292)' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESIDUE 288 - 292)' 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESIDUE 293 - 324)' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 27 ? A MSE 1 2 1 Y 1 A PHE 60 ? A PHE 34 3 1 Y 1 A ARG 61 ? A ARG 35 4 1 Y 1 A ARG 62 ? A ARG 36 5 1 Y 1 A ALA 63 ? A ALA 37 6 1 Y 1 A ARG 64 ? A ARG 38 7 1 Y 1 A PRO 65 ? A PRO 39 8 1 Y 1 A LYS 66 ? A LYS 40 9 1 Y 1 A PHE 67 ? A PHE 41 10 1 Y 1 A GLU 68 ? A GLU 42 11 1 Y 1 A GLN 69 ? A GLN 43 12 1 Y 1 A VAL 70 ? A VAL 44 13 1 Y 1 A ASN 71 ? A ASN 45 14 1 Y 1 A LEU 72 ? A LEU 46 15 1 Y 1 A LEU 73 ? A LEU 47 16 1 Y 1 A ASP 74 ? A ASP 48 17 1 Y 1 A SER 75 ? A SER 49 18 1 Y 1 A ASN 76 ? A ASN 50 19 1 Y 1 A ALA 77 ? A ALA 51 20 1 Y 1 A ALA 95 ? A ALA 69 21 1 Y 1 A GLU 96 ? A GLU 70 22 1 Y 1 A ARG 97 ? A ARG 71 23 1 Y 1 A ARG 98 ? A ARG 72 24 1 Y 1 A PRO 99 ? A PRO 73 25 1 Y 1 A ASP 100 ? A ASP 74 26 1 Y 1 A VAL 101 ? A VAL 75 27 1 Y 1 A VAL 102 ? A VAL 76 28 1 Y 1 A GLU 103 ? A GLU 77 29 1 Y 1 A ASN 104 ? A ASN 78 30 1 Y 1 A GLN 105 ? A GLN 79 31 1 Y 1 A PRO 106 ? A PRO 80 32 1 Y 1 A ASP 107 ? A ASP 81 33 1 Y 1 A ALA 108 ? A ALA 82 34 1 Y 1 A ALA 109 ? A ALA 83 35 1 Y 1 A SER 110 ? A SER 84 36 1 Y 1 A GLN 111 ? A GLN 85 37 1 Y 1 A LEU 112 ? A LEU 86 38 1 Y 1 A ASN 113 ? A ASN 87 39 1 Y 1 A ASP 325 ? A ASP 299 40 1 Y 1 A LYS 326 ? A LYS 300 41 1 Y 1 A ARG 327 ? A ARG 301 42 1 Y 1 A TRP 328 ? A TRP 302 43 1 Y 1 A ARG 329 ? A ARG 303 44 1 Y 1 A GLN 330 ? A GLN 304 45 1 Y 1 A THR 331 ? A THR 305 46 1 Y 1 A VAL 332 ? A VAL 306 47 1 Y 1 A PHE 333 ? A PHE 307 48 1 Y 1 A HIS 334 ? A HIS 308 49 1 Y 1 A ALA 335 ? A ALA 309 50 1 Y 1 A GLU 336 ? A GLU 310 51 1 Y 1 A ASN 337 ? A ASN 311 52 1 Y 1 A LEU 338 ? A LEU 312 53 1 Y 1 A TYR 339 ? A TYR 313 54 1 Y 1 A PHE 340 ? A PHE 314 55 1 Y 1 A GLN 341 ? A GLN 315 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 ILE N N N N 162 ILE CA C N S 163 ILE C C N N 164 ILE O O N N 165 ILE CB C N S 166 ILE CG1 C N N 167 ILE CG2 C N N 168 ILE CD1 C N N 169 ILE OXT O N N 170 ILE H H N N 171 ILE H2 H N N 172 ILE HA H N N 173 ILE HB H N N 174 ILE HG12 H N N 175 ILE HG13 H N N 176 ILE HG21 H N N 177 ILE HG22 H N N 178 ILE HG23 H N N 179 ILE HD11 H N N 180 ILE HD12 H N N 181 ILE HD13 H N N 182 ILE HXT H N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 MSE N N N N 231 MSE CA C N S 232 MSE C C N N 233 MSE O O N N 234 MSE OXT O N N 235 MSE CB C N N 236 MSE CG C N N 237 MSE SE SE N N 238 MSE CE C N N 239 MSE H H N N 240 MSE H2 H N N 241 MSE HA H N N 242 MSE HXT H N N 243 MSE HB2 H N N 244 MSE HB3 H N N 245 MSE HG2 H N N 246 MSE HG3 H N N 247 MSE HE1 H N N 248 MSE HE2 H N N 249 MSE HE3 H N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 SO4 S S N N 305 SO4 O1 O N N 306 SO4 O2 O N N 307 SO4 O3 O N N 308 SO4 O4 O N N 309 THR N N N N 310 THR CA C N S 311 THR C C N N 312 THR O O N N 313 THR CB C N R 314 THR OG1 O N N 315 THR CG2 C N N 316 THR OXT O N N 317 THR H H N N 318 THR H2 H N N 319 THR HA H N N 320 THR HB H N N 321 THR HG1 H N N 322 THR HG21 H N N 323 THR HG22 H N N 324 THR HG23 H N N 325 THR HXT H N N 326 TRP N N N N 327 TRP CA C N S 328 TRP C C N N 329 TRP O O N N 330 TRP CB C N N 331 TRP CG C Y N 332 TRP CD1 C Y N 333 TRP CD2 C Y N 334 TRP NE1 N Y N 335 TRP CE2 C Y N 336 TRP CE3 C Y N 337 TRP CZ2 C Y N 338 TRP CZ3 C Y N 339 TRP CH2 C Y N 340 TRP OXT O N N 341 TRP H H N N 342 TRP H2 H N N 343 TRP HA H N N 344 TRP HB2 H N N 345 TRP HB3 H N N 346 TRP HD1 H N N 347 TRP HE1 H N N 348 TRP HE3 H N N 349 TRP HZ2 H N N 350 TRP HZ3 H N N 351 TRP HH2 H N N 352 TRP HXT H N N 353 TYR N N N N 354 TYR CA C N S 355 TYR C C N N 356 TYR O O N N 357 TYR CB C N N 358 TYR CG C Y N 359 TYR CD1 C Y N 360 TYR CD2 C Y N 361 TYR CE1 C Y N 362 TYR CE2 C Y N 363 TYR CZ C Y N 364 TYR OH O N N 365 TYR OXT O N N 366 TYR H H N N 367 TYR H2 H N N 368 TYR HA H N N 369 TYR HB2 H N N 370 TYR HB3 H N N 371 TYR HD1 H N N 372 TYR HD2 H N N 373 TYR HE1 H N N 374 TYR HE2 H N N 375 TYR HH H N N 376 TYR HXT H N N 377 VAL N N N N 378 VAL CA C N S 379 VAL C C N N 380 VAL O O N N 381 VAL CB C N N 382 VAL CG1 C N N 383 VAL CG2 C N N 384 VAL OXT O N N 385 VAL H H N N 386 VAL H2 H N N 387 VAL HA H N N 388 VAL HB H N N 389 VAL HG11 H N N 390 VAL HG12 H N N 391 VAL HG13 H N N 392 VAL HG21 H N N 393 VAL HG22 H N N 394 VAL HG23 H N N 395 VAL HXT H N N 396 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MSE N CA sing N N 218 MSE N H sing N N 219 MSE N H2 sing N N 220 MSE CA C sing N N 221 MSE CA CB sing N N 222 MSE CA HA sing N N 223 MSE C O doub N N 224 MSE C OXT sing N N 225 MSE OXT HXT sing N N 226 MSE CB CG sing N N 227 MSE CB HB2 sing N N 228 MSE CB HB3 sing N N 229 MSE CG SE sing N N 230 MSE CG HG2 sing N N 231 MSE CG HG3 sing N N 232 MSE SE CE sing N N 233 MSE CE HE1 sing N N 234 MSE CE HE2 sing N N 235 MSE CE HE3 sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 SO4 S O1 doub N N 290 SO4 S O2 doub N N 291 SO4 S O3 sing N N 292 SO4 S O4 sing N N 293 THR N CA sing N N 294 THR N H sing N N 295 THR N H2 sing N N 296 THR CA C sing N N 297 THR CA CB sing N N 298 THR CA HA sing N N 299 THR C O doub N N 300 THR C OXT sing N N 301 THR CB OG1 sing N N 302 THR CB CG2 sing N N 303 THR CB HB sing N N 304 THR OG1 HG1 sing N N 305 THR CG2 HG21 sing N N 306 THR CG2 HG22 sing N N 307 THR CG2 HG23 sing N N 308 THR OXT HXT sing N N 309 TRP N CA sing N N 310 TRP N H sing N N 311 TRP N H2 sing N N 312 TRP CA C sing N N 313 TRP CA CB sing N N 314 TRP CA HA sing N N 315 TRP C O doub N N 316 TRP C OXT sing N N 317 TRP CB CG sing N N 318 TRP CB HB2 sing N N 319 TRP CB HB3 sing N N 320 TRP CG CD1 doub Y N 321 TRP CG CD2 sing Y N 322 TRP CD1 NE1 sing Y N 323 TRP CD1 HD1 sing N N 324 TRP CD2 CE2 doub Y N 325 TRP CD2 CE3 sing Y N 326 TRP NE1 CE2 sing Y N 327 TRP NE1 HE1 sing N N 328 TRP CE2 CZ2 sing Y N 329 TRP CE3 CZ3 doub Y N 330 TRP CE3 HE3 sing N N 331 TRP CZ2 CH2 doub Y N 332 TRP CZ2 HZ2 sing N N 333 TRP CZ3 CH2 sing Y N 334 TRP CZ3 HZ3 sing N N 335 TRP CH2 HH2 sing N N 336 TRP OXT HXT sing N N 337 TYR N CA sing N N 338 TYR N H sing N N 339 TYR N H2 sing N N 340 TYR CA C sing N N 341 TYR CA CB sing N N 342 TYR CA HA sing N N 343 TYR C O doub N N 344 TYR C OXT sing N N 345 TYR CB CG sing N N 346 TYR CB HB2 sing N N 347 TYR CB HB3 sing N N 348 TYR CG CD1 doub Y N 349 TYR CG CD2 sing Y N 350 TYR CD1 CE1 sing Y N 351 TYR CD1 HD1 sing N N 352 TYR CD2 CE2 doub Y N 353 TYR CD2 HD2 sing N N 354 TYR CE1 CZ doub Y N 355 TYR CE1 HE1 sing N N 356 TYR CE2 CZ sing Y N 357 TYR CE2 HE2 sing N N 358 TYR CZ OH sing N N 359 TYR OH HH sing N N 360 TYR OXT HXT sing N N 361 VAL N CA sing N N 362 VAL N H sing N N 363 VAL N H2 sing N N 364 VAL CA C sing N N 365 VAL CA CB sing N N 366 VAL CA HA sing N N 367 VAL C O doub N N 368 VAL C OXT sing N N 369 VAL CB CG1 sing N N 370 VAL CB CG2 sing N N 371 VAL CB HB sing N N 372 VAL CG1 HG11 sing N N 373 VAL CG1 HG12 sing N N 374 VAL CG1 HG13 sing N N 375 VAL CG2 HG21 sing N N 376 VAL CG2 HG22 sing N N 377 VAL CG2 HG23 sing N N 378 VAL OXT HXT sing N N 379 # _atom_sites.entry_id 2YDY _atom_sites.fract_transf_matrix[1][1] 0.024402 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008947 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008122 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S SE # loop_