data_2YEM # _entry.id 2YEM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.313 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2YEM PDBE EBI-47844 WWPDB D_1290047844 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2YEL unspecified 'CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 WITH THE INHIBITOR GW841819X' PDB 2YEK unspecified 'CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD2 WITH THE INHIBITOR GSK525762 (IBET)' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YEM _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-03-25 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Chung, C.W.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Discovery and Characterization of Small Molecule Inhibitors of the Bet Family Bromodomains.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 54 _citation.page_first 3827 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21568322 _citation.pdbx_database_id_DOI 10.1021/JM200108T # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chung, C.W.' 1 ? primary 'Coste, H.' 2 ? primary 'White, J.H.' 3 ? primary 'Mirguet, O.' 4 ? primary 'Wilde, J.' 5 ? primary 'Gosmini, R.L.' 6 ? primary 'Delves, C.' 7 ? primary 'Magny, S.M.' 8 ? primary 'Woodward, R.' 9 ? primary 'Hughes, S.A.' 10 ? primary 'Boursier, E.V.' 11 ? primary 'Flynn, H.' 12 ? primary 'Bouillot, A.M.' 13 ? primary 'Bamborough, P.' 14 ? primary 'Brusq, J.M.' 15 ? primary 'Gellibert, F.J.' 16 ? primary 'Jones, E.J.' 17 ? primary 'Riou, A.M.' 18 ? primary 'Homes, P.' 19 ? primary 'Martin, S.L.' 20 ? primary 'Uings, I.J.' 21 ? primary 'Toum, J.' 22 ? primary 'Clement, C.A.' 23 ? primary 'Boullay, A.B.' 24 ? primary 'Grimley, R.L.' 25 ? primary 'Blandel, F.M.' 26 ? primary 'Prinjha, R.K.' 27 ? primary 'Lee, K.' 28 ? primary 'Kirilovsky, J.' 29 ? primary 'Nicodeme, E.' 30 ? # _cell.entry_id 2YEM _cell.length_a 59.674 _cell.length_b 73.492 _cell.length_c 74.362 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YEM _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'BROMODOMAIN-CONTAINING PROTEIN 4' 15060.332 2 ? ? 'C-TERMINAL BROMODOMAIN, RESIDUES 333-460' ? 2 non-polymer syn 'BENZYL [(4R)-1-METHYL-6-PHENYL-4H-[1,2,4]TRIAZOLO[4,3-A][1,4]BENZODIAZEPIN-4-YL]CARBAMATE' 423.467 2 ? ? ? ? 3 water nat water 18.015 133 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PROTEIN HUNK1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMKDVPDSQQHPAPEKSSKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAR EYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE ; _entity_poly.pdbx_seq_one_letter_code_can ;SMKDVPDSQQHPAPEKSSKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAR EYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 LYS n 1 4 ASP n 1 5 VAL n 1 6 PRO n 1 7 ASP n 1 8 SER n 1 9 GLN n 1 10 GLN n 1 11 HIS n 1 12 PRO n 1 13 ALA n 1 14 PRO n 1 15 GLU n 1 16 LYS n 1 17 SER n 1 18 SER n 1 19 LYS n 1 20 VAL n 1 21 SER n 1 22 GLU n 1 23 GLN n 1 24 LEU n 1 25 LYS n 1 26 CYS n 1 27 CYS n 1 28 SER n 1 29 GLY n 1 30 ILE n 1 31 LEU n 1 32 LYS n 1 33 GLU n 1 34 MET n 1 35 PHE n 1 36 ALA n 1 37 LYS n 1 38 LYS n 1 39 HIS n 1 40 ALA n 1 41 ALA n 1 42 TYR n 1 43 ALA n 1 44 TRP n 1 45 PRO n 1 46 PHE n 1 47 TYR n 1 48 LYS n 1 49 PRO n 1 50 VAL n 1 51 ASP n 1 52 VAL n 1 53 GLU n 1 54 ALA n 1 55 LEU n 1 56 GLY n 1 57 LEU n 1 58 HIS n 1 59 ASP n 1 60 TYR n 1 61 CYS n 1 62 ASP n 1 63 ILE n 1 64 ILE n 1 65 LYS n 1 66 HIS n 1 67 PRO n 1 68 MET n 1 69 ASP n 1 70 MET n 1 71 SER n 1 72 THR n 1 73 ILE n 1 74 LYS n 1 75 SER n 1 76 LYS n 1 77 LEU n 1 78 GLU n 1 79 ALA n 1 80 ARG n 1 81 GLU n 1 82 TYR n 1 83 ARG n 1 84 ASP n 1 85 ALA n 1 86 GLN n 1 87 GLU n 1 88 PHE n 1 89 GLY n 1 90 ALA n 1 91 ASP n 1 92 VAL n 1 93 ARG n 1 94 LEU n 1 95 MET n 1 96 PHE n 1 97 SER n 1 98 ASN n 1 99 CYS n 1 100 TYR n 1 101 LYS n 1 102 TYR n 1 103 ASN n 1 104 PRO n 1 105 PRO n 1 106 ASP n 1 107 HIS n 1 108 GLU n 1 109 VAL n 1 110 VAL n 1 111 ALA n 1 112 MET n 1 113 ALA n 1 114 ARG n 1 115 LYS n 1 116 LEU n 1 117 GLN n 1 118 ASP n 1 119 VAL n 1 120 PHE n 1 121 GLU n 1 122 MET n 1 123 ARG n 1 124 PHE n 1 125 ALA n 1 126 LYS n 1 127 MET n 1 128 PRO n 1 129 ASP n 1 130 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRD4_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession O60885 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2YEM A 3 ? 130 ? O60885 333 ? 460 ? 333 460 2 1 2YEM B 3 ? 130 ? O60885 333 ? 460 ? 333 460 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YEM SER A 1 ? UNP O60885 ? ? 'expression tag' 331 1 1 2YEM MET A 2 ? UNP O60885 ? ? 'expression tag' 332 2 2 2YEM SER B 1 ? UNP O60885 ? ? 'expression tag' 331 3 2 2YEM MET B 2 ? UNP O60885 ? ? 'expression tag' 332 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 WSH non-polymer . 'BENZYL [(4R)-1-METHYL-6-PHENYL-4H-[1,2,4]TRIAZOLO[4,3-A][1,4]BENZODIAZEPIN-4-YL]CARBAMATE' ? 'C25 H21 N5 O2' 423.467 # _exptl.entry_id 2YEM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.7 _exptl_crystal.density_percent_sol 54.8 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '2.5 M (NH4)2SO4, 0.1 M TRIS PH 8.5.' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2009-09-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9765 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type ESRF _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 0.9765 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2YEM _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 73.49 _reflns.d_resolution_high 2.30 _reflns.number_obs 14749 _reflns.number_all ? _reflns.percent_possible_obs 98.4 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.50 _reflns.B_iso_Wilson_estimate 36.96 _reflns.pdbx_redundancy 4.1 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.42 _reflns_shell.percent_possible_all 98.3 _reflns_shell.Rmerge_I_obs 0.46 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.10 _reflns_shell.pdbx_redundancy 4.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2YEM _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 14004 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 52.27 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 97.92 _refine.ls_R_factor_obs 0.18246 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18008 _refine.ls_R_factor_R_free 0.22852 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 745 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.952 _refine.correlation_coeff_Fo_to_Fc_free 0.930 _refine.B_iso_mean 35.493 _refine.aniso_B[1][1] 3.13 _refine.aniso_B[2][2] -0.90 _refine.aniso_B[3][3] -2.23 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 1OUO' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.250 _refine.pdbx_overall_ESU_R_Free 0.205 _refine.overall_SU_ML 0.142 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 12.062 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1802 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 64 _refine_hist.number_atoms_solvent 133 _refine_hist.number_atoms_total 1999 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 52.27 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.021 ? 1966 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1386 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.081 1.975 ? 2652 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.820 3.000 ? 3363 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.524 5.000 ? 231 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.148 23.667 ? 90 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.899 15.000 ? 354 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.170 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.057 0.200 ? 261 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.021 ? 2269 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 452 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.721 2.000 ? 1136 'X-RAY DIFFRACTION' ? r_mcbond_other 0.090 2.000 ? 443 'X-RAY DIFFRACTION' ? r_mcangle_it 1.435 4.000 ? 1833 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.792 4.000 ? 830 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 2.756 6.000 ? 816 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.300 _refine_ls_shell.d_res_low 2.360 _refine_ls_shell.number_reflns_R_work 998 _refine_ls_shell.R_factor_R_work 0.248 _refine_ls_shell.percent_reflns_obs 98.05 _refine_ls_shell.R_factor_R_free 0.269 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 60 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2YEM _struct.title 'Crystal Structure of the Second Bromodomain of Human Brd4 with the inhibitor GW841819X' _struct.pdbx_descriptor 'BROMODOMAIN-CONTAINING PROTEIN 4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YEM _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'SIGNALING PROTEIN, HISTONE, EPIGENETIC READER' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 19 ? PHE A 35 ? LYS A 349 PHE A 365 1 ? 17 HELX_P HELX_P2 2 ALA A 36 ? LYS A 38 ? ALA A 366 LYS A 368 5 ? 3 HELX_P HELX_P3 3 HIS A 39 ? TRP A 44 ? HIS A 369 TRP A 374 1 ? 6 HELX_P HELX_P4 4 PRO A 45 ? TYR A 47 ? PRO A 375 TYR A 377 5 ? 3 HELX_P HELX_P5 5 ASP A 51 ? GLY A 56 ? ASP A 381 GLY A 386 1 ? 6 HELX_P HELX_P6 6 ASP A 59 ? ILE A 64 ? ASP A 389 ILE A 394 1 ? 6 HELX_P HELX_P7 7 ASP A 69 ? ALA A 79 ? ASP A 399 ALA A 409 1 ? 11 HELX_P HELX_P8 8 ASP A 84 ? ASN A 103 ? ASP A 414 ASN A 433 1 ? 20 HELX_P HELX_P9 9 HIS A 107 ? LYS A 126 ? HIS A 437 LYS A 456 1 ? 20 HELX_P HELX_P10 10 LYS B 19 ? PHE B 35 ? LYS B 349 PHE B 365 1 ? 17 HELX_P HELX_P11 11 ALA B 36 ? LYS B 38 ? ALA B 366 LYS B 368 5 ? 3 HELX_P HELX_P12 12 HIS B 39 ? TRP B 44 ? HIS B 369 TRP B 374 1 ? 6 HELX_P HELX_P13 13 PRO B 45 ? TYR B 47 ? PRO B 375 TYR B 377 5 ? 3 HELX_P HELX_P14 14 ASP B 51 ? GLY B 56 ? ASP B 381 GLY B 386 1 ? 6 HELX_P HELX_P15 15 ASP B 59 ? ILE B 64 ? ASP B 389 ILE B 394 1 ? 6 HELX_P HELX_P16 16 ASP B 69 ? ALA B 79 ? ASP B 399 ALA B 409 1 ? 11 HELX_P HELX_P17 17 ASP B 84 ? ASN B 103 ? ASP B 414 ASN B 433 1 ? 20 HELX_P HELX_P18 18 HIS B 107 ? LYS B 126 ? HIS B 437 LYS B 456 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE WSH A 1459' AC2 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE WSH B 1460' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 PRO A 45 ? PRO A 375 . ? 1_555 ? 2 AC1 7 ARG A 83 ? ARG A 413 . ? 3_544 ? 3 AC1 7 ASN A 103 ? ASN A 433 . ? 1_555 ? 4 AC1 7 VAL A 109 ? VAL A 439 . ? 1_555 ? 5 AC1 7 HOH E . ? HOH A 2034 . ? 1_555 ? 6 AC1 7 HOH E . ? HOH A 2067 . ? 1_555 ? 7 AC1 7 WSH D . ? WSH B 1460 . ? 2_455 ? 8 AC2 10 TRP A 44 ? TRP A 374 . ? 2_454 ? 9 AC2 10 WSH C . ? WSH A 1459 . ? 2_454 ? 10 AC2 10 TRP B 44 ? TRP B 374 . ? 1_555 ? 11 AC2 10 PRO B 45 ? PRO B 375 . ? 1_555 ? 12 AC2 10 LEU B 57 ? LEU B 387 . ? 1_555 ? 13 AC2 10 ASN B 103 ? ASN B 433 . ? 1_555 ? 14 AC2 10 HIS B 107 ? HIS B 437 . ? 1_555 ? 15 AC2 10 GLU B 108 ? GLU B 438 . ? 1_555 ? 16 AC2 10 VAL B 109 ? VAL B 439 . ? 1_555 ? 17 AC2 10 HOH F . ? HOH B 2021 . ? 1_555 ? # _database_PDB_matrix.entry_id 2YEM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YEM _atom_sites.fract_transf_matrix[1][1] 0.016758 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013607 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013448 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 331 ? ? ? A . n A 1 2 MET 2 332 ? ? ? A . n A 1 3 LYS 3 333 ? ? ? A . n A 1 4 ASP 4 334 ? ? ? A . n A 1 5 VAL 5 335 ? ? ? A . n A 1 6 PRO 6 336 ? ? ? A . n A 1 7 ASP 7 337 ? ? ? A . n A 1 8 SER 8 338 ? ? ? A . n A 1 9 GLN 9 339 ? ? ? A . n A 1 10 GLN 10 340 ? ? ? A . n A 1 11 HIS 11 341 ? ? ? A . n A 1 12 PRO 12 342 ? ? ? A . n A 1 13 ALA 13 343 ? ? ? A . n A 1 14 PRO 14 344 ? ? ? A . n A 1 15 GLU 15 345 ? ? ? A . n A 1 16 LYS 16 346 ? ? ? A . n A 1 17 SER 17 347 ? ? ? A . n A 1 18 SER 18 348 ? ? ? A . n A 1 19 LYS 19 349 349 LYS LYS A . n A 1 20 VAL 20 350 350 VAL VAL A . n A 1 21 SER 21 351 351 SER SER A . n A 1 22 GLU 22 352 352 GLU GLU A . n A 1 23 GLN 23 353 353 GLN GLN A . n A 1 24 LEU 24 354 354 LEU LEU A . n A 1 25 LYS 25 355 355 LYS LYS A . n A 1 26 CYS 26 356 356 CYS CYS A . n A 1 27 CYS 27 357 357 CYS CYS A . n A 1 28 SER 28 358 358 SER SER A . n A 1 29 GLY 29 359 359 GLY GLY A . n A 1 30 ILE 30 360 360 ILE ILE A . n A 1 31 LEU 31 361 361 LEU LEU A . n A 1 32 LYS 32 362 362 LYS LYS A . n A 1 33 GLU 33 363 363 GLU GLU A . n A 1 34 MET 34 364 364 MET MET A . n A 1 35 PHE 35 365 365 PHE PHE A . n A 1 36 ALA 36 366 366 ALA ALA A . n A 1 37 LYS 37 367 367 LYS LYS A . n A 1 38 LYS 38 368 368 LYS LYS A . n A 1 39 HIS 39 369 369 HIS HIS A . n A 1 40 ALA 40 370 370 ALA ALA A . n A 1 41 ALA 41 371 371 ALA ALA A . n A 1 42 TYR 42 372 372 TYR TYR A . n A 1 43 ALA 43 373 373 ALA ALA A . n A 1 44 TRP 44 374 374 TRP TRP A . n A 1 45 PRO 45 375 375 PRO PRO A . n A 1 46 PHE 46 376 376 PHE PHE A . n A 1 47 TYR 47 377 377 TYR TYR A . n A 1 48 LYS 48 378 378 LYS LYS A . n A 1 49 PRO 49 379 379 PRO PRO A . n A 1 50 VAL 50 380 380 VAL VAL A . n A 1 51 ASP 51 381 381 ASP ASP A . n A 1 52 VAL 52 382 382 VAL VAL A . n A 1 53 GLU 53 383 383 GLU GLU A . n A 1 54 ALA 54 384 384 ALA ALA A . n A 1 55 LEU 55 385 385 LEU LEU A . n A 1 56 GLY 56 386 386 GLY GLY A . n A 1 57 LEU 57 387 387 LEU LEU A . n A 1 58 HIS 58 388 388 HIS HIS A . n A 1 59 ASP 59 389 389 ASP ASP A . n A 1 60 TYR 60 390 390 TYR TYR A . n A 1 61 CYS 61 391 391 CYS CYS A . n A 1 62 ASP 62 392 392 ASP ASP A . n A 1 63 ILE 63 393 393 ILE ILE A . n A 1 64 ILE 64 394 394 ILE ILE A . n A 1 65 LYS 65 395 395 LYS LYS A . n A 1 66 HIS 66 396 396 HIS HIS A . n A 1 67 PRO 67 397 397 PRO PRO A . n A 1 68 MET 68 398 398 MET MET A . n A 1 69 ASP 69 399 399 ASP ASP A . n A 1 70 MET 70 400 400 MET MET A . n A 1 71 SER 71 401 401 SER SER A . n A 1 72 THR 72 402 402 THR THR A . n A 1 73 ILE 73 403 403 ILE ILE A . n A 1 74 LYS 74 404 404 LYS LYS A . n A 1 75 SER 75 405 405 SER SER A . n A 1 76 LYS 76 406 406 LYS LYS A . n A 1 77 LEU 77 407 407 LEU LEU A . n A 1 78 GLU 78 408 408 GLU GLU A . n A 1 79 ALA 79 409 409 ALA ALA A . n A 1 80 ARG 80 410 410 ARG ARG A . n A 1 81 GLU 81 411 411 GLU GLU A . n A 1 82 TYR 82 412 412 TYR TYR A . n A 1 83 ARG 83 413 413 ARG ARG A . n A 1 84 ASP 84 414 414 ASP ASP A . n A 1 85 ALA 85 415 415 ALA ALA A . n A 1 86 GLN 86 416 416 GLN GLN A . n A 1 87 GLU 87 417 417 GLU GLU A . n A 1 88 PHE 88 418 418 PHE PHE A . n A 1 89 GLY 89 419 419 GLY GLY A . n A 1 90 ALA 90 420 420 ALA ALA A . n A 1 91 ASP 91 421 421 ASP ASP A . n A 1 92 VAL 92 422 422 VAL VAL A . n A 1 93 ARG 93 423 423 ARG ARG A . n A 1 94 LEU 94 424 424 LEU LEU A . n A 1 95 MET 95 425 425 MET MET A . n A 1 96 PHE 96 426 426 PHE PHE A . n A 1 97 SER 97 427 427 SER SER A . n A 1 98 ASN 98 428 428 ASN ASN A . n A 1 99 CYS 99 429 429 CYS CYS A . n A 1 100 TYR 100 430 430 TYR TYR A . n A 1 101 LYS 101 431 431 LYS LYS A . n A 1 102 TYR 102 432 432 TYR TYR A . n A 1 103 ASN 103 433 433 ASN ASN A . n A 1 104 PRO 104 434 434 PRO PRO A . n A 1 105 PRO 105 435 435 PRO PRO A . n A 1 106 ASP 106 436 436 ASP ASP A . n A 1 107 HIS 107 437 437 HIS HIS A . n A 1 108 GLU 108 438 438 GLU GLU A . n A 1 109 VAL 109 439 439 VAL VAL A . n A 1 110 VAL 110 440 440 VAL VAL A . n A 1 111 ALA 111 441 441 ALA ALA A . n A 1 112 MET 112 442 442 MET MET A . n A 1 113 ALA 113 443 443 ALA ALA A . n A 1 114 ARG 114 444 444 ARG ARG A . n A 1 115 LYS 115 445 445 LYS LYS A . n A 1 116 LEU 116 446 446 LEU LEU A . n A 1 117 GLN 117 447 447 GLN GLN A . n A 1 118 ASP 118 448 448 ASP ASP A . n A 1 119 VAL 119 449 449 VAL VAL A . n A 1 120 PHE 120 450 450 PHE PHE A . n A 1 121 GLU 121 451 451 GLU GLU A . n A 1 122 MET 122 452 452 MET MET A . n A 1 123 ARG 123 453 453 ARG ARG A . n A 1 124 PHE 124 454 454 PHE PHE A . n A 1 125 ALA 125 455 455 ALA ALA A . n A 1 126 LYS 126 456 456 LYS LYS A . n A 1 127 MET 127 457 457 MET MET A . n A 1 128 PRO 128 458 458 PRO PRO A . n A 1 129 ASP 129 459 ? ? ? A . n A 1 130 GLU 130 460 ? ? ? A . n B 1 1 SER 1 331 ? ? ? B . n B 1 2 MET 2 332 ? ? ? B . n B 1 3 LYS 3 333 ? ? ? B . n B 1 4 ASP 4 334 ? ? ? B . n B 1 5 VAL 5 335 ? ? ? B . n B 1 6 PRO 6 336 ? ? ? B . n B 1 7 ASP 7 337 ? ? ? B . n B 1 8 SER 8 338 ? ? ? B . n B 1 9 GLN 9 339 ? ? ? B . n B 1 10 GLN 10 340 ? ? ? B . n B 1 11 HIS 11 341 ? ? ? B . n B 1 12 PRO 12 342 ? ? ? B . n B 1 13 ALA 13 343 ? ? ? B . n B 1 14 PRO 14 344 ? ? ? B . n B 1 15 GLU 15 345 ? ? ? B . n B 1 16 LYS 16 346 ? ? ? B . n B 1 17 SER 17 347 ? ? ? B . n B 1 18 SER 18 348 ? ? ? B . n B 1 19 LYS 19 349 349 LYS LYS B . n B 1 20 VAL 20 350 350 VAL VAL B . n B 1 21 SER 21 351 351 SER SER B . n B 1 22 GLU 22 352 352 GLU GLU B . n B 1 23 GLN 23 353 353 GLN GLN B . n B 1 24 LEU 24 354 354 LEU LEU B . n B 1 25 LYS 25 355 355 LYS LYS B . n B 1 26 CYS 26 356 356 CYS CYS B . n B 1 27 CYS 27 357 357 CYS CYS B . n B 1 28 SER 28 358 358 SER SER B . n B 1 29 GLY 29 359 359 GLY GLY B . n B 1 30 ILE 30 360 360 ILE ILE B . n B 1 31 LEU 31 361 361 LEU LEU B . n B 1 32 LYS 32 362 362 LYS LYS B . n B 1 33 GLU 33 363 363 GLU GLU B . n B 1 34 MET 34 364 364 MET MET B . n B 1 35 PHE 35 365 365 PHE PHE B . n B 1 36 ALA 36 366 366 ALA ALA B . n B 1 37 LYS 37 367 367 LYS LYS B . n B 1 38 LYS 38 368 368 LYS LYS B . n B 1 39 HIS 39 369 369 HIS HIS B . n B 1 40 ALA 40 370 370 ALA ALA B . n B 1 41 ALA 41 371 371 ALA ALA B . n B 1 42 TYR 42 372 372 TYR TYR B . n B 1 43 ALA 43 373 373 ALA ALA B . n B 1 44 TRP 44 374 374 TRP TRP B . n B 1 45 PRO 45 375 375 PRO PRO B . n B 1 46 PHE 46 376 376 PHE PHE B . n B 1 47 TYR 47 377 377 TYR TYR B . n B 1 48 LYS 48 378 378 LYS LYS B . n B 1 49 PRO 49 379 379 PRO PRO B . n B 1 50 VAL 50 380 380 VAL VAL B . n B 1 51 ASP 51 381 381 ASP ASP B . n B 1 52 VAL 52 382 382 VAL VAL B . n B 1 53 GLU 53 383 383 GLU GLU B . n B 1 54 ALA 54 384 384 ALA ALA B . n B 1 55 LEU 55 385 385 LEU LEU B . n B 1 56 GLY 56 386 386 GLY GLY B . n B 1 57 LEU 57 387 387 LEU LEU B . n B 1 58 HIS 58 388 388 HIS HIS B . n B 1 59 ASP 59 389 389 ASP ASP B . n B 1 60 TYR 60 390 390 TYR TYR B . n B 1 61 CYS 61 391 391 CYS CYS B . n B 1 62 ASP 62 392 392 ASP ASP B . n B 1 63 ILE 63 393 393 ILE ILE B . n B 1 64 ILE 64 394 394 ILE ILE B . n B 1 65 LYS 65 395 395 LYS LYS B . n B 1 66 HIS 66 396 396 HIS HIS B . n B 1 67 PRO 67 397 397 PRO PRO B . n B 1 68 MET 68 398 398 MET MET B . n B 1 69 ASP 69 399 399 ASP ASP B . n B 1 70 MET 70 400 400 MET MET B . n B 1 71 SER 71 401 401 SER SER B . n B 1 72 THR 72 402 402 THR THR B . n B 1 73 ILE 73 403 403 ILE ILE B . n B 1 74 LYS 74 404 404 LYS LYS B . n B 1 75 SER 75 405 405 SER SER B . n B 1 76 LYS 76 406 406 LYS LYS B . n B 1 77 LEU 77 407 407 LEU LEU B . n B 1 78 GLU 78 408 408 GLU GLU B . n B 1 79 ALA 79 409 409 ALA ALA B . n B 1 80 ARG 80 410 410 ARG ARG B . n B 1 81 GLU 81 411 411 GLU GLU B . n B 1 82 TYR 82 412 412 TYR TYR B . n B 1 83 ARG 83 413 413 ARG ARG B . n B 1 84 ASP 84 414 414 ASP ASP B . n B 1 85 ALA 85 415 415 ALA ALA B . n B 1 86 GLN 86 416 416 GLN GLN B . n B 1 87 GLU 87 417 417 GLU GLU B . n B 1 88 PHE 88 418 418 PHE PHE B . n B 1 89 GLY 89 419 419 GLY GLY B . n B 1 90 ALA 90 420 420 ALA ALA B . n B 1 91 ASP 91 421 421 ASP ASP B . n B 1 92 VAL 92 422 422 VAL VAL B . n B 1 93 ARG 93 423 423 ARG ARG B . n B 1 94 LEU 94 424 424 LEU LEU B . n B 1 95 MET 95 425 425 MET MET B . n B 1 96 PHE 96 426 426 PHE PHE B . n B 1 97 SER 97 427 427 SER SER B . n B 1 98 ASN 98 428 428 ASN ASN B . n B 1 99 CYS 99 429 429 CYS CYS B . n B 1 100 TYR 100 430 430 TYR TYR B . n B 1 101 LYS 101 431 431 LYS LYS B . n B 1 102 TYR 102 432 432 TYR TYR B . n B 1 103 ASN 103 433 433 ASN ASN B . n B 1 104 PRO 104 434 434 PRO PRO B . n B 1 105 PRO 105 435 435 PRO PRO B . n B 1 106 ASP 106 436 436 ASP ASP B . n B 1 107 HIS 107 437 437 HIS HIS B . n B 1 108 GLU 108 438 438 GLU GLU B . n B 1 109 VAL 109 439 439 VAL VAL B . n B 1 110 VAL 110 440 440 VAL VAL B . n B 1 111 ALA 111 441 441 ALA ALA B . n B 1 112 MET 112 442 442 MET MET B . n B 1 113 ALA 113 443 443 ALA ALA B . n B 1 114 ARG 114 444 444 ARG ARG B . n B 1 115 LYS 115 445 445 LYS LYS B . n B 1 116 LEU 116 446 446 LEU LEU B . n B 1 117 GLN 117 447 447 GLN GLN B . n B 1 118 ASP 118 448 448 ASP ASP B . n B 1 119 VAL 119 449 449 VAL VAL B . n B 1 120 PHE 120 450 450 PHE PHE B . n B 1 121 GLU 121 451 451 GLU GLU B . n B 1 122 MET 122 452 452 MET MET B . n B 1 123 ARG 123 453 453 ARG ARG B . n B 1 124 PHE 124 454 454 PHE PHE B . n B 1 125 ALA 125 455 455 ALA ALA B . n B 1 126 LYS 126 456 456 LYS LYS B . n B 1 127 MET 127 457 457 MET MET B . n B 1 128 PRO 128 458 458 PRO PRO B . n B 1 129 ASP 129 459 459 ASP ASP B . n B 1 130 GLU 130 460 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 WSH 1 1459 1459 WSH WSH A . D 2 WSH 1 1460 1460 WSH WSH B . E 3 HOH 1 2001 2001 HOH HOH A . E 3 HOH 2 2002 2002 HOH HOH A . E 3 HOH 3 2003 2003 HOH HOH A . E 3 HOH 4 2004 2004 HOH HOH A . E 3 HOH 5 2005 2005 HOH HOH A . E 3 HOH 6 2006 2006 HOH HOH A . E 3 HOH 7 2007 2007 HOH HOH A . E 3 HOH 8 2008 2008 HOH HOH A . E 3 HOH 9 2009 2009 HOH HOH A . E 3 HOH 10 2010 2010 HOH HOH A . E 3 HOH 11 2011 2011 HOH HOH A . E 3 HOH 12 2012 2012 HOH HOH A . E 3 HOH 13 2013 2013 HOH HOH A . E 3 HOH 14 2014 2014 HOH HOH A . E 3 HOH 15 2015 2015 HOH HOH A . E 3 HOH 16 2016 2016 HOH HOH A . E 3 HOH 17 2017 2017 HOH HOH A . E 3 HOH 18 2018 2018 HOH HOH A . E 3 HOH 19 2019 2019 HOH HOH A . E 3 HOH 20 2020 2020 HOH HOH A . E 3 HOH 21 2021 2021 HOH HOH A . E 3 HOH 22 2022 2022 HOH HOH A . E 3 HOH 23 2023 2023 HOH HOH A . E 3 HOH 24 2024 2024 HOH HOH A . E 3 HOH 25 2025 2025 HOH HOH A . E 3 HOH 26 2026 2026 HOH HOH A . E 3 HOH 27 2027 2027 HOH HOH A . E 3 HOH 28 2028 2028 HOH HOH A . E 3 HOH 29 2029 2029 HOH HOH A . E 3 HOH 30 2030 2030 HOH HOH A . E 3 HOH 31 2031 2031 HOH HOH A . E 3 HOH 32 2032 2032 HOH HOH A . E 3 HOH 33 2033 2033 HOH HOH A . E 3 HOH 34 2034 2034 HOH HOH A . E 3 HOH 35 2035 2035 HOH HOH A . E 3 HOH 36 2036 2036 HOH HOH A . E 3 HOH 37 2037 2037 HOH HOH A . E 3 HOH 38 2038 2038 HOH HOH A . E 3 HOH 39 2039 2039 HOH HOH A . E 3 HOH 40 2040 2040 HOH HOH A . E 3 HOH 41 2041 2041 HOH HOH A . E 3 HOH 42 2042 2042 HOH HOH A . E 3 HOH 43 2043 2043 HOH HOH A . E 3 HOH 44 2044 2044 HOH HOH A . E 3 HOH 45 2045 2045 HOH HOH A . E 3 HOH 46 2046 2046 HOH HOH A . E 3 HOH 47 2047 2047 HOH HOH A . E 3 HOH 48 2048 2048 HOH HOH A . E 3 HOH 49 2049 2049 HOH HOH A . E 3 HOH 50 2050 2050 HOH HOH A . E 3 HOH 51 2051 2051 HOH HOH A . E 3 HOH 52 2052 2052 HOH HOH A . E 3 HOH 53 2053 2053 HOH HOH A . E 3 HOH 54 2054 2054 HOH HOH A . E 3 HOH 55 2055 2055 HOH HOH A . E 3 HOH 56 2056 2056 HOH HOH A . E 3 HOH 57 2057 2057 HOH HOH A . E 3 HOH 58 2058 2058 HOH HOH A . E 3 HOH 59 2059 2059 HOH HOH A . E 3 HOH 60 2060 2060 HOH HOH A . E 3 HOH 61 2061 2061 HOH HOH A . E 3 HOH 62 2062 2062 HOH HOH A . E 3 HOH 63 2063 2063 HOH HOH A . E 3 HOH 64 2064 2064 HOH HOH A . E 3 HOH 65 2065 2065 HOH HOH A . E 3 HOH 66 2066 2066 HOH HOH A . E 3 HOH 67 2067 2067 HOH HOH A . E 3 HOH 68 2068 2068 HOH HOH A . E 3 HOH 69 2069 2069 HOH HOH A . E 3 HOH 70 2070 2070 HOH HOH A . E 3 HOH 71 2071 2071 HOH HOH A . E 3 HOH 72 2072 2072 HOH HOH A . E 3 HOH 73 2073 2073 HOH HOH A . E 3 HOH 74 2074 2074 HOH HOH A . E 3 HOH 75 2075 2075 HOH HOH A . E 3 HOH 76 2076 2076 HOH HOH A . E 3 HOH 77 2077 2077 HOH HOH A . E 3 HOH 78 2078 2078 HOH HOH A . E 3 HOH 79 2079 2079 HOH HOH A . E 3 HOH 80 2080 2080 HOH HOH A . E 3 HOH 81 2081 2081 HOH HOH A . F 3 HOH 1 2001 2001 HOH HOH B . F 3 HOH 2 2002 2002 HOH HOH B . F 3 HOH 3 2003 2003 HOH HOH B . F 3 HOH 4 2004 2004 HOH HOH B . F 3 HOH 5 2005 2005 HOH HOH B . F 3 HOH 6 2006 2006 HOH HOH B . F 3 HOH 7 2007 2007 HOH HOH B . F 3 HOH 8 2008 2008 HOH HOH B . F 3 HOH 9 2009 2009 HOH HOH B . F 3 HOH 10 2010 2010 HOH HOH B . F 3 HOH 11 2011 2011 HOH HOH B . F 3 HOH 12 2012 2012 HOH HOH B . F 3 HOH 13 2013 2013 HOH HOH B . F 3 HOH 14 2014 2014 HOH HOH B . F 3 HOH 15 2015 2015 HOH HOH B . F 3 HOH 16 2016 2016 HOH HOH B . F 3 HOH 17 2017 2017 HOH HOH B . F 3 HOH 18 2018 2018 HOH HOH B . F 3 HOH 19 2019 2019 HOH HOH B . F 3 HOH 20 2020 2020 HOH HOH B . F 3 HOH 21 2021 2021 HOH HOH B . F 3 HOH 22 2022 2022 HOH HOH B . F 3 HOH 23 2023 2023 HOH HOH B . F 3 HOH 24 2024 2024 HOH HOH B . F 3 HOH 25 2025 2025 HOH HOH B . F 3 HOH 26 2026 2026 HOH HOH B . F 3 HOH 27 2027 2027 HOH HOH B . F 3 HOH 28 2028 2028 HOH HOH B . F 3 HOH 29 2029 2029 HOH HOH B . F 3 HOH 30 2030 2030 HOH HOH B . F 3 HOH 31 2031 2031 HOH HOH B . F 3 HOH 32 2032 2032 HOH HOH B . F 3 HOH 33 2033 2033 HOH HOH B . F 3 HOH 34 2034 2034 HOH HOH B . F 3 HOH 35 2035 2035 HOH HOH B . F 3 HOH 36 2036 2036 HOH HOH B . F 3 HOH 37 2037 2037 HOH HOH B . F 3 HOH 38 2038 2038 HOH HOH B . F 3 HOH 39 2039 2039 HOH HOH B . F 3 HOH 40 2040 2040 HOH HOH B . F 3 HOH 41 2041 2041 HOH HOH B . F 3 HOH 42 2042 2042 HOH HOH B . F 3 HOH 43 2043 2043 HOH HOH B . F 3 HOH 44 2044 2044 HOH HOH B . F 3 HOH 45 2045 2045 HOH HOH B . F 3 HOH 46 2046 2046 HOH HOH B . F 3 HOH 47 2047 2047 HOH HOH B . F 3 HOH 48 2048 2048 HOH HOH B . F 3 HOH 49 2049 2049 HOH HOH B . F 3 HOH 50 2050 2050 HOH HOH B . F 3 HOH 51 2051 2051 HOH HOH B . F 3 HOH 52 2052 2052 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA monomeric 1 2 software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E 2 1 B,D,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-15 2 'Structure model' 1 1 2013-05-08 3 'Structure model' 1 2 2019-08-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly 2 3 'Structure model' pdbx_struct_assembly_gen 3 3 'Structure model' pdbx_struct_assembly_prop # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -4.7633 6.4512 -24.0448 0.0138 0.0439 0.0833 -0.0109 0.0005 0.0084 0.7726 3.5029 3.1457 -0.1314 0.2766 0.0924 -0.0615 -0.0586 0.0249 0.0114 0.0895 -0.0672 -0.1683 0.1675 -0.0280 'X-RAY DIFFRACTION' 2 ? refined -1.9962 3.6294 -45.0215 0.0320 0.1269 0.0375 -0.0376 0.0259 -0.0238 3.6045 2.8329 4.9280 -1.2955 2.4160 -1.5470 -0.1143 0.2679 0.0460 -0.1892 0.0090 -0.2127 -0.0754 0.6317 0.1053 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 349 ? ? A 458 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 349 ? ? B 459 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0102 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 331 ? A SER 1 2 1 Y 1 A MET 332 ? A MET 2 3 1 Y 1 A LYS 333 ? A LYS 3 4 1 Y 1 A ASP 334 ? A ASP 4 5 1 Y 1 A VAL 335 ? A VAL 5 6 1 Y 1 A PRO 336 ? A PRO 6 7 1 Y 1 A ASP 337 ? A ASP 7 8 1 Y 1 A SER 338 ? A SER 8 9 1 Y 1 A GLN 339 ? A GLN 9 10 1 Y 1 A GLN 340 ? A GLN 10 11 1 Y 1 A HIS 341 ? A HIS 11 12 1 Y 1 A PRO 342 ? A PRO 12 13 1 Y 1 A ALA 343 ? A ALA 13 14 1 Y 1 A PRO 344 ? A PRO 14 15 1 Y 1 A GLU 345 ? A GLU 15 16 1 Y 1 A LYS 346 ? A LYS 16 17 1 Y 1 A SER 347 ? A SER 17 18 1 Y 1 A SER 348 ? A SER 18 19 1 Y 1 A ASP 459 ? A ASP 129 20 1 Y 1 A GLU 460 ? A GLU 130 21 1 Y 1 B SER 331 ? B SER 1 22 1 Y 1 B MET 332 ? B MET 2 23 1 Y 1 B LYS 333 ? B LYS 3 24 1 Y 1 B ASP 334 ? B ASP 4 25 1 Y 1 B VAL 335 ? B VAL 5 26 1 Y 1 B PRO 336 ? B PRO 6 27 1 Y 1 B ASP 337 ? B ASP 7 28 1 Y 1 B SER 338 ? B SER 8 29 1 Y 1 B GLN 339 ? B GLN 9 30 1 Y 1 B GLN 340 ? B GLN 10 31 1 Y 1 B HIS 341 ? B HIS 11 32 1 Y 1 B PRO 342 ? B PRO 12 33 1 Y 1 B ALA 343 ? B ALA 13 34 1 Y 1 B PRO 344 ? B PRO 14 35 1 Y 1 B GLU 345 ? B GLU 15 36 1 Y 1 B LYS 346 ? B LYS 16 37 1 Y 1 B SER 347 ? B SER 17 38 1 Y 1 B SER 348 ? B SER 18 39 1 Y 1 B GLU 460 ? B GLU 130 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'BENZYL [(4R)-1-METHYL-6-PHENYL-4H-[1,2,4]TRIAZOLO[4,3-A][1,4]BENZODIAZEPIN-4-YL]CARBAMATE' WSH 3 water HOH #