data_2YEN # _entry.id 2YEN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YEN pdb_00002yen 10.2210/pdb2yen/pdb PDBE EBI-47778 ? ? WWPDB D_1290047778 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-02-08 2 'Structure model' 1 1 2012-07-04 3 'Structure model' 2 0 2019-05-22 4 'Structure model' 3 0 2020-03-11 5 'Structure model' 3 1 2023-06-14 6 'Structure model' 3 2 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' Other 7 3 'Structure model' 'Source and taxonomy' 8 3 'Structure model' 'Structure summary' 9 4 'Structure model' 'Data collection' 10 4 'Structure model' Other 11 4 'Structure model' 'Polymer sequence' 12 5 'Structure model' 'Database references' 13 5 'Structure model' Other 14 6 'Structure model' 'Data collection' 15 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' entity 3 3 'Structure model' pdbx_database_proc 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_entity_src_syn 6 3 'Structure model' pdbx_nmr_software 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_ref 9 3 'Structure model' struct_ref_seq 10 3 'Structure model' struct_ref_seq_dif 11 4 'Structure model' entity_poly 12 4 'Structure model' pdbx_database_status 13 4 'Structure model' pdbx_nmr_spectrometer 14 5 'Structure model' database_2 15 5 'Structure model' pdbx_database_status 16 6 'Structure model' chem_comp_atom 17 6 'Structure model' chem_comp_bond 18 6 'Structure model' pdbx_entry_details 19 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.formula' 2 3 'Structure model' '_chem_comp.formula_weight' 3 3 'Structure model' '_chem_comp.id' 4 3 'Structure model' '_chem_comp.mon_nstd_flag' 5 3 'Structure model' '_chem_comp.name' 6 3 'Structure model' '_chem_comp.type' 7 3 'Structure model' '_entity.pdbx_description' 8 3 'Structure model' '_pdbx_database_status.recvd_author_approval' 9 3 'Structure model' '_pdbx_entity_src_syn.organism_common_name' 10 3 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 11 3 'Structure model' '_pdbx_entity_src_syn.pdbx_beg_seq_num' 12 3 'Structure model' '_pdbx_entity_src_syn.pdbx_end_seq_num' 13 3 'Structure model' '_pdbx_nmr_software.name' 14 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 15 3 'Structure model' '_struct_ref.db_code' 16 3 'Structure model' '_struct_ref.db_name' 17 3 'Structure model' '_struct_ref.pdbx_align_begin' 18 3 'Structure model' '_struct_ref.pdbx_db_accession' 19 3 'Structure model' '_struct_ref.pdbx_seq_one_letter_code' 20 3 'Structure model' '_struct_ref_seq.db_align_end' 21 3 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_end' 22 3 'Structure model' '_struct_ref_seq.pdbx_db_accession' 23 3 'Structure model' '_struct_ref_seq.seq_align_end' 24 4 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 25 4 'Structure model' '_pdbx_database_status.status_code_cs' 26 4 'Structure model' '_pdbx_database_status.status_code_mr' 27 4 'Structure model' '_pdbx_nmr_spectrometer.model' 28 5 'Structure model' '_database_2.pdbx_DOI' 29 5 'Structure model' '_database_2.pdbx_database_accession' 30 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' 31 6 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YEN _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-03-28 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Favreau, P.' 1 'Benoit, E.' 2 'Hocking, H.G.' 3 'Carlier, L.' 4 ;D'hoedt, D. ; 5 'Leipold, E.' 6 'Markgraf, R.' 7 'Schlumberger, S.' 8 'Cordova, M.A.' 9 'Gaertner, H.' 10 'Paolini-Bertrand, M.' 11 'Hartley, O.' 12 'Tytgat, J.' 13 'Heinemann, S.H.' 14 'Bertrand, D.' 15 'Boelens, R.' 16 'Stocklin, R.' 17 'Molgo, J.' 18 # _citation.id primary _citation.title ;A Novel Mu-Conopeptide, Cniiic, Exerts Potent and Preferential Inhibition of Na(V) 1.2/1.4 Channels and Blocks Neuronal Nicotinic Acetylcholine Receptors. ; _citation.journal_abbrev Br.J.Pharmacol. _citation.journal_volume 166 _citation.page_first 1654 _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM BJPCBH _citation.country UK _citation.journal_id_ISSN 0007-1188 _citation.journal_id_CSD 1097 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22229737 _citation.pdbx_database_id_DOI 10.1111/J.1476-5381.2012.01837.X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Favreau, P.' 1 ? primary 'Benoit, E.' 2 ? primary 'Hocking, H.G.' 3 ? primary 'Carlier, L.' 4 ? primary ;D'Hoedt, D. ; 5 ? primary 'Leipold, E.' 6 ? primary 'Markgraf, R.' 7 ? primary 'Schlumberger, S.' 8 ? primary 'Cordova, M.A.' 9 ? primary 'Gaertner, H.' 10 ? primary 'Paolini-Bertrand, M.' 11 ? primary 'Hartley, O.' 12 ? primary 'Tytgat, J.' 13 ? primary 'Heinemann, S.H.' 14 ? primary 'Bertrand, D.' 15 ? primary 'Boelens, R.' 16 ? primary 'Stocklin, R.' 17 ? primary 'Molgo, J.' 18 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Mu-conotoxin CnIIIC' _entity.formula_weight 2385.776 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'AMIDATED C-TERMINUS' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(PCA)GCCNGPKGCSSKWCRDHARCC(NH2)' _entity_poly.pdbx_seq_one_letter_code_can QGCCNGPKGCSSKWCRDHARCCX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PCA n 1 2 GLY n 1 3 CYS n 1 4 CYS n 1 5 ASN n 1 6 GLY n 1 7 PRO n 1 8 LYS n 1 9 GLY n 1 10 CYS n 1 11 SER n 1 12 SER n 1 13 LYS n 1 14 TRP n 1 15 CYS n 1 16 ARG n 1 17 ASP n 1 18 HIS n 1 19 ALA n 1 20 ARG n 1 21 CYS n 1 22 CYS n 1 23 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 23 _pdbx_entity_src_syn.organism_scientific 'Conus consors' _pdbx_entity_src_syn.organism_common_name 'Singed cone' _pdbx_entity_src_syn.ncbi_taxonomy_id 101297 _pdbx_entity_src_syn.details VENOM # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PCA 'L-peptide linking' n 'PYROGLUTAMIC ACID' ? 'C5 H7 N O3' 129.114 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PCA 1 1 1 PCA PCA A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 CYS 3 3 3 CYS CYS A . n A 1 4 CYS 4 4 4 CYS CYS A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 TRP 14 14 14 TRP TRP A . n A 1 15 CYS 15 15 15 CYS CYS A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 HIS 18 18 18 HIS HIS A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 NH2 23 23 23 NH2 NH2 A . n # _cell.entry_id 2YEN _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YEN _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 2YEN _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 2YEN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2YEN _struct.title 'Solution structure of the skeletal muscle and neuronal voltage gated sodium channel antagonist mu-conotoxin CnIIIC' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YEN _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text 'TOXIN, CONOTOXIN, NEUROTOXIN, AMIDATED C-TERMINUS' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GM3C_CONCN _struct_ref.pdbx_db_accession I1SB07 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code QGCCNGPKGCSSKWCRDHARCC _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YEN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession I1SB07 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 22 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 22 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YEN PCA A 1 ? UNP I1SB07 GLN 1 conflict 1 1 1 2YEN NH2 A 23 ? UNP I1SB07 ? ? amidation 23 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 8 ? SER A 11 ? LYS A 8 SER A 11 5 ? 4 HELX_P HELX_P2 2 LYS A 13 ? ALA A 19 ? LYS A 13 ALA A 19 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 15 SG ? ? A CYS 3 A CYS 15 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf2 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 21 SG ? ? A CYS 4 A CYS 21 1_555 ? ? ? ? ? ? ? 2.017 ? ? disulf3 disulf ? ? A CYS 10 SG ? ? ? 1_555 A CYS 22 SG ? ? A CYS 10 A CYS 22 1_555 ? ? ? ? ? ? ? 2.039 ? ? covale1 covale both ? A PCA 1 C ? ? ? 1_555 A GLY 2 N ? ? A PCA 1 A GLY 2 1_555 ? ? ? ? ? ? ? 1.312 ? ? covale2 covale both ? A CYS 22 C ? ? ? 1_555 A NH2 23 N ? ? A CYS 22 A NH2 23 1_555 ? ? ? ? ? ? ? 1.300 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 PCA A 1 ? . . . . PCA A 1 ? 1_555 . . . . . . . GLN 1 PCA 'Pyrrolidone carboxylic acid' 'Named protein modification' 2 NH2 A 23 ? CYS A 22 ? NH2 A 23 ? 1_555 CYS A 22 ? 1_555 . . CYS 11 NH2 None 'Terminal amidation' 3 CYS A 3 ? CYS A 15 ? CYS A 3 ? 1_555 CYS A 15 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 4 ? CYS A 21 ? CYS A 4 ? 1_555 CYS A 21 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS A 10 ? CYS A 22 ? CYS A 10 ? 1_555 CYS A 22 ? 1_555 SG SG . . . None 'Disulfide bridge' # _pdbx_entry_details.entry_id 2YEN _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;AMINO GROUP (NH2): C-TERMINAL AMIDATION AND BIOPOLYMER CHAIN TERMINATION VARIANTS ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 4 HZ1 A LYS 13 ? ? OD1 A ASP 17 ? ? 1.56 2 5 HZ1 A LYS 13 ? ? OD2 A ASP 17 ? ? 1.58 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 4 CYS A 10 ? ? -97.21 34.04 2 5 CYS A 3 ? ? -90.28 49.84 3 5 CYS A 10 ? ? -101.30 64.12 4 6 ASN A 5 ? ? -149.28 13.19 5 10 ASN A 5 ? ? -147.54 12.51 6 19 SER A 12 ? ? -174.33 138.94 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 19 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 20 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.077 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id PCA _pdbx_struct_mod_residue.label_seq_id 1 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id PCA _pdbx_struct_mod_residue.auth_seq_id 1 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id GLU _pdbx_struct_mod_residue.details 'PYROGLUTAMIC ACID' # _pdbx_database_remark.id 650 _pdbx_database_remark.text ; HELIX DETERMINATION METHOD: AUTHOR PROVIDED. ; # _pdbx_nmr_ensemble.entry_id 2YEN _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'LEAST RESTRAINT VIOLATION' # _pdbx_nmr_representative.entry_id 2YEN _pdbx_nmr_representative.conformer_id 11 _pdbx_nmr_representative.selection_criteria ? # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '95% H2O/5% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 278.0 _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 4.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 DQF-COSY 1 3 1 E-COSY 1 4 1 TOCSY 1 # _pdbx_nmr_details.entry_id 2YEN _pdbx_nmr_details.text 'THE STRUCTURE WAS DETERMINED FROM 2D PROTON EXPERIMENTS ON AN NATURAL ABUNDANCE SAMPLE OF CNIIIC' # _pdbx_nmr_refine.entry_id 2YEN _pdbx_nmr_refine.method 'RESTRAINED MOLECULAR DYNAMICS' _pdbx_nmr_refine.details 'WATER REFINEMENT USING SCRIPTS FROM THE RECOORD STRUCTURE DETERMINATION AND WATER REFINEMENT PROTOCOL' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement CNS ? 'BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE,SIMONSON,WARREN' 1 'structure solution' Sparky ? ? 2 'structure solution' CYANA ? ? 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLY N N N N 108 GLY CA C N N 109 GLY C C N N 110 GLY O O N N 111 GLY OXT O N N 112 GLY H H N N 113 GLY H2 H N N 114 GLY HA2 H N N 115 GLY HA3 H N N 116 GLY HXT H N N 117 HIS N N N N 118 HIS CA C N S 119 HIS C C N N 120 HIS O O N N 121 HIS CB C N N 122 HIS CG C Y N 123 HIS ND1 N Y N 124 HIS CD2 C Y N 125 HIS CE1 C Y N 126 HIS NE2 N Y N 127 HIS OXT O N N 128 HIS H H N N 129 HIS H2 H N N 130 HIS HA H N N 131 HIS HB2 H N N 132 HIS HB3 H N N 133 HIS HD1 H N N 134 HIS HD2 H N N 135 HIS HE1 H N N 136 HIS HE2 H N N 137 HIS HXT H N N 138 LYS N N N N 139 LYS CA C N S 140 LYS C C N N 141 LYS O O N N 142 LYS CB C N N 143 LYS CG C N N 144 LYS CD C N N 145 LYS CE C N N 146 LYS NZ N N N 147 LYS OXT O N N 148 LYS H H N N 149 LYS H2 H N N 150 LYS HA H N N 151 LYS HB2 H N N 152 LYS HB3 H N N 153 LYS HG2 H N N 154 LYS HG3 H N N 155 LYS HD2 H N N 156 LYS HD3 H N N 157 LYS HE2 H N N 158 LYS HE3 H N N 159 LYS HZ1 H N N 160 LYS HZ2 H N N 161 LYS HZ3 H N N 162 LYS HXT H N N 163 NH2 N N N N 164 NH2 HN1 H N N 165 NH2 HN2 H N N 166 PCA N N N N 167 PCA CA C N S 168 PCA CB C N N 169 PCA CG C N N 170 PCA CD C N N 171 PCA OE O N N 172 PCA C C N N 173 PCA O O N N 174 PCA OXT O N N 175 PCA H H N N 176 PCA HA H N N 177 PCA HB2 H N N 178 PCA HB3 H N N 179 PCA HG2 H N N 180 PCA HG3 H N N 181 PCA HXT H N N 182 PRO N N N N 183 PRO CA C N S 184 PRO C C N N 185 PRO O O N N 186 PRO CB C N N 187 PRO CG C N N 188 PRO CD C N N 189 PRO OXT O N N 190 PRO H H N N 191 PRO HA H N N 192 PRO HB2 H N N 193 PRO HB3 H N N 194 PRO HG2 H N N 195 PRO HG3 H N N 196 PRO HD2 H N N 197 PRO HD3 H N N 198 PRO HXT H N N 199 SER N N N N 200 SER CA C N S 201 SER C C N N 202 SER O O N N 203 SER CB C N N 204 SER OG O N N 205 SER OXT O N N 206 SER H H N N 207 SER H2 H N N 208 SER HA H N N 209 SER HB2 H N N 210 SER HB3 H N N 211 SER HG H N N 212 SER HXT H N N 213 TRP N N N N 214 TRP CA C N S 215 TRP C C N N 216 TRP O O N N 217 TRP CB C N N 218 TRP CG C Y N 219 TRP CD1 C Y N 220 TRP CD2 C Y N 221 TRP NE1 N Y N 222 TRP CE2 C Y N 223 TRP CE3 C Y N 224 TRP CZ2 C Y N 225 TRP CZ3 C Y N 226 TRP CH2 C Y N 227 TRP OXT O N N 228 TRP H H N N 229 TRP H2 H N N 230 TRP HA H N N 231 TRP HB2 H N N 232 TRP HB3 H N N 233 TRP HD1 H N N 234 TRP HE1 H N N 235 TRP HE3 H N N 236 TRP HZ2 H N N 237 TRP HZ3 H N N 238 TRP HH2 H N N 239 TRP HXT H N N 240 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLY N CA sing N N 102 GLY N H sing N N 103 GLY N H2 sing N N 104 GLY CA C sing N N 105 GLY CA HA2 sing N N 106 GLY CA HA3 sing N N 107 GLY C O doub N N 108 GLY C OXT sing N N 109 GLY OXT HXT sing N N 110 HIS N CA sing N N 111 HIS N H sing N N 112 HIS N H2 sing N N 113 HIS CA C sing N N 114 HIS CA CB sing N N 115 HIS CA HA sing N N 116 HIS C O doub N N 117 HIS C OXT sing N N 118 HIS CB CG sing N N 119 HIS CB HB2 sing N N 120 HIS CB HB3 sing N N 121 HIS CG ND1 sing Y N 122 HIS CG CD2 doub Y N 123 HIS ND1 CE1 doub Y N 124 HIS ND1 HD1 sing N N 125 HIS CD2 NE2 sing Y N 126 HIS CD2 HD2 sing N N 127 HIS CE1 NE2 sing Y N 128 HIS CE1 HE1 sing N N 129 HIS NE2 HE2 sing N N 130 HIS OXT HXT sing N N 131 LYS N CA sing N N 132 LYS N H sing N N 133 LYS N H2 sing N N 134 LYS CA C sing N N 135 LYS CA CB sing N N 136 LYS CA HA sing N N 137 LYS C O doub N N 138 LYS C OXT sing N N 139 LYS CB CG sing N N 140 LYS CB HB2 sing N N 141 LYS CB HB3 sing N N 142 LYS CG CD sing N N 143 LYS CG HG2 sing N N 144 LYS CG HG3 sing N N 145 LYS CD CE sing N N 146 LYS CD HD2 sing N N 147 LYS CD HD3 sing N N 148 LYS CE NZ sing N N 149 LYS CE HE2 sing N N 150 LYS CE HE3 sing N N 151 LYS NZ HZ1 sing N N 152 LYS NZ HZ2 sing N N 153 LYS NZ HZ3 sing N N 154 LYS OXT HXT sing N N 155 NH2 N HN1 sing N N 156 NH2 N HN2 sing N N 157 PCA N CA sing N N 158 PCA N CD sing N N 159 PCA N H sing N N 160 PCA CA CB sing N N 161 PCA CA C sing N N 162 PCA CA HA sing N N 163 PCA CB CG sing N N 164 PCA CB HB2 sing N N 165 PCA CB HB3 sing N N 166 PCA CG CD sing N N 167 PCA CG HG2 sing N N 168 PCA CG HG3 sing N N 169 PCA CD OE doub N N 170 PCA C O doub N N 171 PCA C OXT sing N N 172 PCA OXT HXT sing N N 173 PRO N CA sing N N 174 PRO N CD sing N N 175 PRO N H sing N N 176 PRO CA C sing N N 177 PRO CA CB sing N N 178 PRO CA HA sing N N 179 PRO C O doub N N 180 PRO C OXT sing N N 181 PRO CB CG sing N N 182 PRO CB HB2 sing N N 183 PRO CB HB3 sing N N 184 PRO CG CD sing N N 185 PRO CG HG2 sing N N 186 PRO CG HG3 sing N N 187 PRO CD HD2 sing N N 188 PRO CD HD3 sing N N 189 PRO OXT HXT sing N N 190 SER N CA sing N N 191 SER N H sing N N 192 SER N H2 sing N N 193 SER CA C sing N N 194 SER CA CB sing N N 195 SER CA HA sing N N 196 SER C O doub N N 197 SER C OXT sing N N 198 SER CB OG sing N N 199 SER CB HB2 sing N N 200 SER CB HB3 sing N N 201 SER OG HG sing N N 202 SER OXT HXT sing N N 203 TRP N CA sing N N 204 TRP N H sing N N 205 TRP N H2 sing N N 206 TRP CA C sing N N 207 TRP CA CB sing N N 208 TRP CA HA sing N N 209 TRP C O doub N N 210 TRP C OXT sing N N 211 TRP CB CG sing N N 212 TRP CB HB2 sing N N 213 TRP CB HB3 sing N N 214 TRP CG CD1 doub Y N 215 TRP CG CD2 sing Y N 216 TRP CD1 NE1 sing Y N 217 TRP CD1 HD1 sing N N 218 TRP CD2 CE2 doub Y N 219 TRP CD2 CE3 sing Y N 220 TRP NE1 CE2 sing Y N 221 TRP NE1 HE1 sing N N 222 TRP CE2 CZ2 sing Y N 223 TRP CE3 CZ3 doub Y N 224 TRP CE3 HE3 sing N N 225 TRP CZ2 CH2 doub Y N 226 TRP CZ2 HZ2 sing N N 227 TRP CZ3 CH2 sing Y N 228 TRP CZ3 HZ3 sing N N 229 TRP CH2 HH2 sing N N 230 TRP OXT HXT sing N N 231 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 750 # _atom_sites.entry_id 2YEN _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_