HEADER RECEPTOR 05-APR-11 2YFB TITLE X-RAY STRUCTURE OF MCPS LIGAND BINDING DOMAIN IN COMPLEX WITH TITLE 2 SUCCINATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL-ACCEPTING CHEMOTAXIS TRANSDUCER; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN, RESIDUES 46-283; COMPND 5 SYNONYM: MCPS; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 160488; SOURCE 4 STRAIN: KT2440; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CHEMORECEPTOR, SIGNAL TRANSDUCTION, RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR J.A.GAVIRA,E.PINEDA-MOLINA,T.KRELL REVDAT 4 20-DEC-23 2YFB 1 REMARK REVDAT 3 10-JUL-13 2YFB 1 JRNL REMARK REVDAT 2 30-MAY-12 2YFB 1 JRNL REVDAT 1 18-APR-12 2YFB 0 JRNL AUTH E.PINEDA-MOLINA,J.REYES-DARIAS,J.LACAL,J.L.RAMOS, JRNL AUTH 2 J.M.GARCIA-RUIZ,J.A.GAVIRA,T.KRELL JRNL TITL EVIDENCE FOR CHEMORECEPTORS WITH BIMODULAR LIGAND-BINDING JRNL TITL 2 REGIONS HARBORING TWO SIGNAL-BINDING SITES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 18926 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23112148 JRNL DOI 10.1073/PNAS.1201400109 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.A.GAVIRA,J.LACAL,J.L.RAMOS,J.M.GARCIA-RUIZ,T.KRELL, REMARK 1 AUTH 2 E.PINEDA-MOLINA REMARK 1 TITL CRYSTALLIZATION AND CRYSTALLOGRAPHIC ANALYSIS OF THE REMARK 1 TITL 2 LIGAND-BINDING DOMAIN OF THE PSEUDOMONAS PUTIDA REMARK 1 TITL 3 CHEMORECEPTOR MCPS IN COMPLEX WITH MALATE AND SUCCINATE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 68 428 2012 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 22505412 REMARK 1 DOI 10.1107/S1744309112004940 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 38883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9124 - 4.4522 0.95 2989 141 0.2226 0.2688 REMARK 3 2 4.4522 - 3.5403 0.93 2861 136 0.1641 0.2262 REMARK 3 3 3.5403 - 3.0947 0.94 2869 136 0.1972 0.2533 REMARK 3 4 3.0947 - 2.8126 0.94 2859 133 0.1980 0.2742 REMARK 3 5 2.8126 - 2.6115 0.95 2903 139 0.2091 0.2903 REMARK 3 6 2.6115 - 2.4578 0.96 2875 138 0.2092 0.3016 REMARK 3 7 2.4578 - 2.3349 0.96 2892 134 0.2143 0.3053 REMARK 3 8 2.3349 - 2.2334 0.96 2893 136 0.2177 0.2955 REMARK 3 9 2.2334 - 2.1475 0.97 2911 135 0.2151 0.2865 REMARK 3 10 2.1475 - 2.0735 0.97 2929 139 0.2090 0.2836 REMARK 3 11 2.0735 - 2.0087 0.97 2918 143 0.2275 0.2911 REMARK 3 12 2.0087 - 1.9514 0.92 2739 127 0.2475 0.3229 REMARK 3 13 1.9514 - 1.9000 0.82 2490 118 0.2700 0.3499 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 65.68 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77910 REMARK 3 B22 (A**2) : 0.22230 REMARK 3 B33 (A**2) : -1.00140 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.80330 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3874 REMARK 3 ANGLE : 0.942 5250 REMARK 3 CHIRALITY : 0.061 598 REMARK 3 PLANARITY : 0.004 706 REMARK 3 DIHEDRAL : 17.088 1528 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 43:99) REMARK 3 ORIGIN FOR THE GROUP (A): 66.4090 0.5178 16.7457 REMARK 3 T TENSOR REMARK 3 T11: 0.2388 T22: 0.1912 REMARK 3 T33: 0.1639 T12: -0.0892 REMARK 3 T13: -0.0343 T23: 0.0863 REMARK 3 L TENSOR REMARK 3 L11: 0.1585 L22: 0.3343 REMARK 3 L33: 0.3171 L12: 0.0882 REMARK 3 L13: -0.0346 L23: 0.0152 REMARK 3 S TENSOR REMARK 3 S11: 0.2870 S12: -0.2439 S13: -0.0163 REMARK 3 S21: 0.2324 S22: -0.3766 S23: -0.1945 REMARK 3 S31: -0.0957 S32: 0.1195 S33: -0.0304 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 100:157) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9817 4.4618 9.6905 REMARK 3 T TENSOR REMARK 3 T11: 0.1779 T22: 0.1312 REMARK 3 T33: 0.1280 T12: -0.0323 REMARK 3 T13: 0.0033 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 0.4104 L22: 0.8127 REMARK 3 L33: 0.5397 L12: 0.0442 REMARK 3 L13: 0.2202 L23: -0.5287 REMARK 3 S TENSOR REMARK 3 S11: 0.1182 S12: -0.2279 S13: 0.3161 REMARK 3 S21: 0.0350 S22: -0.2567 S23: 0.1077 REMARK 3 S31: -0.2241 S32: -0.0415 S33: -0.0925 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 158:191) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2291 -5.5187 5.9147 REMARK 3 T TENSOR REMARK 3 T11: 0.1280 T22: 0.3229 REMARK 3 T33: 0.3361 T12: 0.0042 REMARK 3 T13: -0.0109 T23: 0.0714 REMARK 3 L TENSOR REMARK 3 L11: 0.1177 L22: 0.2790 REMARK 3 L33: 0.3688 L12: 0.0289 REMARK 3 L13: 0.0333 L23: 0.3740 REMARK 3 S TENSOR REMARK 3 S11: 0.1614 S12: 0.0178 S13: 0.0888 REMARK 3 S21: -0.1372 S22: -0.0586 S23: 0.2661 REMARK 3 S31: 0.0276 S32: -0.2932 S33: -0.0350 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 192:223) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1665 -2.1419 -2.2815 REMARK 3 T TENSOR REMARK 3 T11: 0.1749 T22: 0.2832 REMARK 3 T33: 0.2220 T12: -0.0090 REMARK 3 T13: -0.0045 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 1.1783 L22: 0.6792 REMARK 3 L33: 1.0342 L12: 0.7725 REMARK 3 L13: 0.2317 L23: -0.0081 REMARK 3 S TENSOR REMARK 3 S11: -0.0787 S12: 0.2812 S13: 0.0017 REMARK 3 S21: -0.1584 S22: 0.1403 S23: 0.2709 REMARK 3 S31: 0.1957 S32: -0.2128 S33: 0.0097 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 224:277) REMARK 3 ORIGIN FOR THE GROUP (A): 49.5633 0.9797 4.3085 REMARK 3 T TENSOR REMARK 3 T11: 0.1227 T22: 0.1337 REMARK 3 T33: 0.1379 T12: -0.0188 REMARK 3 T13: 0.0056 T23: 0.0945 REMARK 3 L TENSOR REMARK 3 L11: 0.2681 L22: 1.1411 REMARK 3 L33: 0.5317 L12: 0.4323 REMARK 3 L13: -0.1805 L23: 0.1289 REMARK 3 S TENSOR REMARK 3 S11: 0.2105 S12: 0.3868 S13: 0.1323 REMARK 3 S21: 0.0134 S22: -0.2050 S23: -0.1228 REMARK 3 S31: 0.0096 S32: -0.0124 S33: 0.0127 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 40:99) REMARK 3 ORIGIN FOR THE GROUP (A): 68.6067 -19.6996 10.7170 REMARK 3 T TENSOR REMARK 3 T11: 0.1714 T22: 0.1775 REMARK 3 T33: 0.1339 T12: 0.0490 REMARK 3 T13: 0.0461 T23: 0.0672 REMARK 3 L TENSOR REMARK 3 L11: 0.1775 L22: 0.3537 REMARK 3 L33: 0.0919 L12: -0.3516 REMARK 3 L13: -0.0813 L23: 0.2273 REMARK 3 S TENSOR REMARK 3 S11: 0.2089 S12: 0.2342 S13: 0.0247 REMARK 3 S21: -0.1687 S22: -0.2186 S23: -0.1061 REMARK 3 S31: 0.0518 S32: 0.0913 S33: -0.0082 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 100:277) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3384 -19.3526 16.3905 REMARK 3 T TENSOR REMARK 3 T11: 0.1846 T22: 0.1521 REMARK 3 T33: 0.1705 T12: -0.0364 REMARK 3 T13: -0.0028 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.1000 L22: 0.5800 REMARK 3 L33: 0.2034 L12: -0.3473 REMARK 3 L13: -0.3200 L23: -0.2706 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: 0.0038 S13: -0.1728 REMARK 3 S21: -0.0166 S22: 0.0028 S23: 0.1310 REMARK 3 S31: 0.0428 S32: -0.0425 S33: -0.0326 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YFB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-APR-11. REMARK 100 THE DEPOSITION ID IS D_1290047925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM16 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40558 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2YFA REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 0.25 M (NH4)2SO4 AND 100 REMARK 280 MM SODIUM ACETATE, PH 4.8, PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 113.03350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.01950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 113.03350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.01950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 26 REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 SER A 29 REMARK 465 HIS A 30 REMARK 465 HIS A 31 REMARK 465 HIS A 32 REMARK 465 HIS A 33 REMARK 465 HIS A 34 REMARK 465 HIS A 35 REMARK 465 SER A 36 REMARK 465 SER A 37 REMARK 465 GLY A 38 REMARK 465 LEU A 39 REMARK 465 VAL A 40 REMARK 465 PRO A 41 REMARK 465 ARG A 42 REMARK 465 ARG A 278 REMARK 465 ARG A 279 REMARK 465 ASP A 280 REMARK 465 ILE A 281 REMARK 465 GLU A 282 REMARK 465 SER A 283 REMARK 465 MET B 26 REMARK 465 GLY B 27 REMARK 465 SER B 28 REMARK 465 SER B 29 REMARK 465 HIS B 30 REMARK 465 HIS B 31 REMARK 465 HIS B 32 REMARK 465 HIS B 33 REMARK 465 HIS B 34 REMARK 465 HIS B 35 REMARK 465 SER B 36 REMARK 465 SER B 37 REMARK 465 GLY B 38 REMARK 465 LEU B 39 REMARK 465 ARG B 278 REMARK 465 ARG B 279 REMARK 465 ASP B 280 REMARK 465 ILE B 281 REMARK 465 GLU B 282 REMARK 465 SER B 283 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER B 221 C - N - CA ANGL. DEV. = -17.0 DEGREES REMARK 500 SER B 221 C - N - CA ANGL. DEV. = -17.1 DEGREES REMARK 500 SER B 221 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 SER B 221 N - CA - CB ANGL. DEV. = -10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 159 48.91 -86.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2031 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A2038 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A2052 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A2077 DISTANCE = 8.57 ANGSTROMS REMARK 525 HOH A2082 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A2133 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A2141 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B2029 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B2038 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH B2041 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH B2057 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH B2138 DISTANCE = 5.97 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SIN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SIN B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1279 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YFA RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF MCPS LIGAND BINDING DOMAIN IN COMPLEX WITH MALATE DBREF 2YFB A 46 283 UNP Q88E10 Q88E10_PSEPK 46 283 DBREF 2YFB B 46 283 UNP Q88E10 Q88E10_PSEPK 46 283 SEQADV 2YFB MET A 26 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB GLY A 27 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB SER A 28 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB SER A 29 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB HIS A 30 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB HIS A 31 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB HIS A 32 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB HIS A 33 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB HIS A 34 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB HIS A 35 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB SER A 36 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB SER A 37 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB GLY A 38 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB LEU A 39 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB VAL A 40 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB PRO A 41 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB ARG A 42 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB GLY A 43 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB SER A 44 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB HIS A 45 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB MET B 26 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB GLY B 27 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB SER B 28 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB SER B 29 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB HIS B 30 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB HIS B 31 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB HIS B 32 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB HIS B 33 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB HIS B 34 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB HIS B 35 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB SER B 36 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB SER B 37 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB GLY B 38 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB LEU B 39 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB VAL B 40 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB PRO B 41 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB ARG B 42 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB GLY B 43 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB SER B 44 UNP Q88E10 EXPRESSION TAG SEQADV 2YFB HIS B 45 UNP Q88E10 EXPRESSION TAG SEQRES 1 A 258 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 258 LEU VAL PRO ARG GLY SER HIS MET GLY ASP ILE GLY GLN SEQRES 3 A 258 LEU ASN LYS ASP LEU THR ASP LEU ARG ILE ALA ARG LEU SEQRES 4 A 258 GLN TYR MET ILE ALA ASN GLY ASP ASP THR ALA ALA ALA SEQRES 5 A 258 ASN THR LEU ALA LYS LEU ASP ALA PHE SER LYS GLN GLN SEQRES 6 A 258 ALA TYR LEU ALA THR THR PHE LYS SER PRO GLU ASN VAL SEQRES 7 A 258 LYS LEU LEU GLY GLU LEU GLY ASP THR ILE SER ALA TYR SEQRES 8 A 258 LYS LEU SER LEU ASN LYS MET ARG GLN GLY TYR ASP ALA SEQRES 9 A 258 THR ARG ALA ALA ARG VAL SER MET ASP SER SER ALA ILE SEQRES 10 A 258 ARG ALA ASP GLN ALA MET ASP ALA LEU SER GLN GLU VAL SEQRES 11 A 258 MET ALA ARG PRO GLU ALA ASP SER VAL ARG LEU ALA GLN SEQRES 12 A 258 TYR GLN LEU ILE SER LYS ALA ARG GLN GLN LEU LEU GLN SEQRES 13 A 258 VAL ARG ILE ASP VAL ARG GLY TYR ILE ALA GLU ASN SER SEQRES 14 A 258 SER ALA ASN GLU GLN ALA ALA LEU ARG GLN LEU ASP ALA SEQRES 15 A 258 ALA LEU ALA ASP THR ASP ASN LEU LYS ARG GLN LEU PRO SEQRES 16 A 258 SER GLU ASP ALA ARG LEU GLN GLN PHE GLU ASN ALA VAL SEQRES 17 A 258 LEU ALA TYR ARG ASP ALA VAL ARG GLN PHE ARG ASP ALA SEQRES 18 A 258 VAL ALA ASN ILE THR THR SER ARG ALA GLU MET THR VAL SEQRES 19 A 258 GLN GLY ALA ASP ILE VAL LYS ARG SER ASP ALA LEU TYR SEQRES 20 A 258 GLN ILE GLN LEU GLU ARG ARG ASP ILE GLU SER SEQRES 1 B 258 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 258 LEU VAL PRO ARG GLY SER HIS MET GLY ASP ILE GLY GLN SEQRES 3 B 258 LEU ASN LYS ASP LEU THR ASP LEU ARG ILE ALA ARG LEU SEQRES 4 B 258 GLN TYR MET ILE ALA ASN GLY ASP ASP THR ALA ALA ALA SEQRES 5 B 258 ASN THR LEU ALA LYS LEU ASP ALA PHE SER LYS GLN GLN SEQRES 6 B 258 ALA TYR LEU ALA THR THR PHE LYS SER PRO GLU ASN VAL SEQRES 7 B 258 LYS LEU LEU GLY GLU LEU GLY ASP THR ILE SER ALA TYR SEQRES 8 B 258 LYS LEU SER LEU ASN LYS MET ARG GLN GLY TYR ASP ALA SEQRES 9 B 258 THR ARG ALA ALA ARG VAL SER MET ASP SER SER ALA ILE SEQRES 10 B 258 ARG ALA ASP GLN ALA MET ASP ALA LEU SER GLN GLU VAL SEQRES 11 B 258 MET ALA ARG PRO GLU ALA ASP SER VAL ARG LEU ALA GLN SEQRES 12 B 258 TYR GLN LEU ILE SER LYS ALA ARG GLN GLN LEU LEU GLN SEQRES 13 B 258 VAL ARG ILE ASP VAL ARG GLY TYR ILE ALA GLU ASN SER SEQRES 14 B 258 SER ALA ASN GLU GLN ALA ALA LEU ARG GLN LEU ASP ALA SEQRES 15 B 258 ALA LEU ALA ASP THR ASP ASN LEU LYS ARG GLN LEU PRO SEQRES 16 B 258 SER GLU ASP ALA ARG LEU GLN GLN PHE GLU ASN ALA VAL SEQRES 17 B 258 LEU ALA TYR ARG ASP ALA VAL ARG GLN PHE ARG ASP ALA SEQRES 18 B 258 VAL ALA ASN ILE THR THR SER ARG ALA GLU MET THR VAL SEQRES 19 B 258 GLN GLY ALA ASP ILE VAL LYS ARG SER ASP ALA LEU TYR SEQRES 20 B 258 GLN ILE GLN LEU GLU ARG ARG ASP ILE GLU SER HET SIN A 500 8 HET ACT A 501 4 HET SO4 A1278 5 HET SIN B 500 8 HET ACT B 501 4 HET SO4 B1278 5 HET SO4 B1279 5 HETNAM SIN SUCCINIC ACID HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION FORMUL 3 SIN 2(C4 H6 O4) FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 5 SO4 3(O4 S 2-) FORMUL 10 HOH *498(H2 O) HELIX 1 1 GLY A 43 ALA A 69 1 27 HELIX 2 2 ASP A 72 THR A 95 1 24 HELIX 3 3 SER A 99 ARG A 158 1 60 HELIX 4 4 ALA A 161 GLU A 192 1 32 HELIX 5 5 SER A 194 LEU A 219 1 26 HELIX 6 6 ASP A 223 GLU A 277 1 55 HELIX 7 7 GLY B 43 ALA B 69 1 27 HELIX 8 8 ASP B 72 PHE B 97 1 26 HELIX 9 9 SER B 99 ALA B 157 1 59 HELIX 10 10 ALA B 161 GLU B 192 1 32 HELIX 11 11 SER B 194 LEU B 219 1 26 HELIX 12 12 GLU B 222 GLU B 277 1 56 SITE 1 AC1 10 ARG A 60 ARG A 63 ARG A 254 THR A 258 SITE 2 AC1 10 HOH A2016 HOH A2017 HOH A2255 HOH A2260 SITE 3 AC1 10 HOH A2264 GLN B 65 SITE 1 AC2 8 MET A 137 ASP A 138 ARG A 183 VAL A 186 SITE 2 AC2 8 ARG A 187 ILE A 190 TYR A 236 HOH A2158 SITE 1 AC3 7 HIS A 45 PHE A 97 LYS A 98 SER A 99 SITE 2 AC3 7 ASN A 102 GLN A 275 HOH A2098 SITE 1 AC4 9 GLN A 65 ARG B 60 ARG B 63 ARG B 254 SITE 2 AC4 9 THR B 258 HOH B2018 HOH B2019 HOH B2214 SITE 3 AC4 9 HOH B2233 SITE 1 AC5 6 ASP B 138 ARG B 183 VAL B 186 ARG B 187 SITE 2 AC5 6 TYR B 236 HOH B2144 SITE 1 AC6 8 ARG A 124 GLN A 125 HOH A2122 HOH A2138 SITE 2 AC6 8 ARG B 124 GLN B 125 HOH B2116 HOH B2118 SITE 1 AC7 7 HIS B 45 PHE B 97 LYS B 98 SER B 99 SITE 2 AC7 7 ASN B 102 GLN B 275 HOH B2230 CRYST1 226.067 46.039 50.823 90.00 95.92 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004423 0.000000 0.000459 0.00000 SCALE2 0.000000 0.021721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019782 0.00000