HEADER TRANSFERASE 07-APR-11 2YFS TITLE CRYSTAL STRUCTURE OF INULOSUCRASE FROM LACTOBACILLUS JOHNSONII NCC533 TITLE 2 IN COMPLEX WITH SUCROSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEVANSUCRASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 145-708; COMPND 5 SYNONYM: INULOSUCRASE; COMPND 6 EC: 2.4.1.9; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS JOHNSONII; SOURCE 3 ORGANISM_TAXID: 33959; SOURCE 4 STRAIN: NCC533; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15B; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETINUJ KEYWDS FRUCTOSYLTRANSFERASE, GLYCOSIDE HYDROLASE FAMILY GH68, TRANSFERASE, KEYWDS 2 SUGAR UTILIZATION EXPDTA X-RAY DIFFRACTION AUTHOR T.PIJNING,M.A.ANWAR,H.LEEMHUIS,S.KRALJ,L.DIJKHUIZEN,B.W.DIJKSTRA REVDAT 4 20-DEC-23 2YFS 1 HETSYN REVDAT 3 29-JUL-20 2YFS 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 FORMUL LINK SITE ATOM REVDAT 2 31-AUG-11 2YFS 1 JRNL REVDAT 1 03-AUG-11 2YFS 0 JRNL AUTH T.PIJNING,M.A.ANWAR,M.BOGER,J.M.DOBRUCHOWSKA,H.LEEMHUIS, JRNL AUTH 2 S.KRALJ,L.DIJKHUIZEN,B.W.DIJKSTRA JRNL TITL CRYSTAL STRUCTURE OF INULOSUCRASE FROM LACTOBACILLUS: JRNL TITL 2 INSIGHTS INTO THE SUBSTRATE SPECIFICITY AND PRODUCT JRNL TITL 3 SPECIFICITY OF GH68 FRUCTANSUCRASES. JRNL REF J.MOL.BIOL. V. 412 80 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21801732 JRNL DOI 10.1016/J.JMB.2011.07.031 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1400 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1859 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4196 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.36000 REMARK 3 B22 (A**2) : -1.36000 REMARK 3 B33 (A**2) : 2.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.348 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.534 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4369 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5960 ; 1.394 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 536 ; 6.270 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 217 ;38.251 ;26.129 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 702 ;15.082 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;22.359 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 649 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3348 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2650 ; 0.797 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4271 ; 1.551 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1719 ; 1.992 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1687 ; 3.357 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 145-175 ARE NOT VISIBLE IN ELECTRON DENSITY REMARK 4 REMARK 4 2YFS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-APR-11. REMARK 100 THE DEPOSITION ID IS D_1290047957. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27086 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 39.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1OYG REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M (NH4)2)SO4, 5% (V/V) 2-PROPANOL, PH REMARK 280 6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 85.97550 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 85.97550 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 58.25150 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 85.97550 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 85.97550 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 58.25150 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 85.97550 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 85.97550 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 58.25150 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 85.97550 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 85.97550 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 58.25150 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 85.97550 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 85.97550 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 58.25150 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 85.97550 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 85.97550 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 58.25150 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 85.97550 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 85.97550 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 58.25150 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 85.97550 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 85.97550 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 58.25150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -126.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 116.50300 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 272 TO ASN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 144 REMARK 465 ASP A 145 REMARK 465 VAL A 146 REMARK 465 LYS A 147 REMARK 465 GLN A 148 REMARK 465 VAL A 149 REMARK 465 GLU A 150 REMARK 465 LYS A 151 REMARK 465 LYS A 152 REMARK 465 ASP A 153 REMARK 465 SER A 154 REMARK 465 VAL A 155 REMARK 465 ASP A 156 REMARK 465 LYS A 157 REMARK 465 THR A 158 REMARK 465 ASN A 159 REMARK 465 ALA A 160 REMARK 465 GLU A 161 REMARK 465 GLU A 162 REMARK 465 ASN A 163 REMARK 465 LYS A 164 REMARK 465 ASP A 165 REMARK 465 SER A 166 REMARK 465 SER A 167 REMARK 465 VAL A 168 REMARK 465 LYS A 169 REMARK 465 PRO A 170 REMARK 465 ALA A 171 REMARK 465 GLU A 172 REMARK 465 ASN A 173 REMARK 465 ALA A 174 REMARK 465 THR A 175 REMARK 465 HIS A 709 REMARK 465 HIS A 710 REMARK 465 HIS A 711 REMARK 465 HIS A 712 REMARK 465 HIS A 713 REMARK 465 HIS A 714 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 177 -178.11 -69.70 REMARK 500 ASP A 193 99.31 -68.55 REMARK 500 SER A 211 136.48 -38.64 REMARK 500 TRP A 271 -116.61 -121.42 REMARK 500 ASP A 304 75.29 -151.81 REMARK 500 ASP A 362 84.43 -69.27 REMARK 500 TYR A 403 -67.26 -98.38 REMARK 500 ASN A 415 106.31 -21.29 REMARK 500 LYS A 416 41.70 -95.12 REMARK 500 ALA A 418 55.86 -94.37 REMARK 500 MET A 423 76.32 -153.77 REMARK 500 ASN A 448 66.83 -150.04 REMARK 500 ASN A 489 49.55 -153.98 REMARK 500 ASN A 498 -168.09 -73.64 REMARK 500 MET A 518 -13.93 74.73 REMARK 500 GLU A 582 -59.51 70.05 REMARK 500 THR A 621 122.42 76.60 REMARK 500 ARG A 623 172.08 -59.72 REMARK 500 TRP A 696 -108.41 82.75 REMARK 500 LEU A 698 109.27 -51.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1712 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 317 OD1 REMARK 620 2 ASP A 660 OD2 75.0 REMARK 620 3 ASP A 660 OD1 108.5 53.8 REMARK 620 4 ILE A 662 O 173.8 107.7 77.3 REMARK 620 5 SER A 667 OG 98.4 76.5 111.7 77.1 REMARK 620 6 HOH A2029 O 79.1 107.4 73.9 105.1 174.4 REMARK 620 7 HOH A2092 O 92.4 164.4 141.1 84.0 96.6 78.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1711 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 419 OD1 REMARK 620 2 GLN A 450 OE1 92.3 REMARK 620 3 TRP A 487 O 98.9 103.4 REMARK 620 4 ASN A 489 OD1 163.2 82.3 97.8 REMARK 620 5 ASP A 521 OD1 110.6 156.8 70.3 76.7 REMARK 620 6 ASP A 521 OD2 67.9 155.9 68.1 120.5 43.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YFT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF INULOSUCRASE FROM LACTOBACILLUS JOHNSONII REMARK 900 NCC533 IN COMPLEX WITH 1-KESTOSE REMARK 900 RELATED ID: 2YFR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF INULOSUCRASE FROM LACTOBACILLUS JOHNSONII REMARK 900 NCC533 DBREF 2YFS A 145 708 UNP Q74K42 Q74K42_LACJO 145 708 SEQADV 2YFS MET A 144 UNP Q74K42 EXPRESSION TAG SEQADV 2YFS HIS A 709 UNP Q74K42 EXPRESSION TAG SEQADV 2YFS HIS A 710 UNP Q74K42 EXPRESSION TAG SEQADV 2YFS HIS A 711 UNP Q74K42 EXPRESSION TAG SEQADV 2YFS HIS A 712 UNP Q74K42 EXPRESSION TAG SEQADV 2YFS HIS A 713 UNP Q74K42 EXPRESSION TAG SEQADV 2YFS HIS A 714 UNP Q74K42 EXPRESSION TAG SEQADV 2YFS ASN A 272 UNP Q74K42 ASP 272 ENGINEERED MUTATION SEQRES 1 A 571 MET ASP VAL LYS GLN VAL GLU LYS LYS ASP SER VAL ASP SEQRES 2 A 571 LYS THR ASN ALA GLU GLU ASN LYS ASP SER SER VAL LYS SEQRES 3 A 571 PRO ALA GLU ASN ALA THR LYS ALA GLU LEU LYS GLY GLN SEQRES 4 A 571 VAL LYS ASP ILE VAL GLU GLU SER GLY VAL ASP THR SER SEQRES 5 A 571 LYS LEU THR ASN ASP GLN ILE ASN GLU LEU ASN LYS ILE SEQRES 6 A 571 ASN PHE SER LYS GLU ALA LYS SER GLY THR GLN LEU THR SEQRES 7 A 571 TYR ASN ASP PHE LYS LYS ILE ALA LYS THR LEU ILE GLU SEQRES 8 A 571 GLN ASP ALA ARG TYR ALA ILE PRO PHE PHE ASN ALA SER SEQRES 9 A 571 LYS ILE LYS ASN MET PRO ALA ALA LYS THR LEU ASP ALA SEQRES 10 A 571 GLN SER GLY LYS VAL GLU ASP LEU GLU ILE TRP ASN SER SEQRES 11 A 571 TRP PRO VAL GLN ASP ALA LYS THR GLY TYR VAL SER ASN SEQRES 12 A 571 TRP ASN GLY TYR GLN LEU VAL ILE GLY MET MET GLY VAL SEQRES 13 A 571 PRO ASN VAL ASN ASP ASN HIS ILE TYR LEU LEU TYR ASN SEQRES 14 A 571 LYS TYR GLY ASP ASN ASP PHE ASN HIS TRP LYS ASN ALA SEQRES 15 A 571 GLY PRO ILE PHE GLY LEU GLY THR PRO VAL ILE GLN GLN SEQRES 16 A 571 TRP SER GLY SER ALA THR LEU ASN LYS ASP GLY SER ILE SEQRES 17 A 571 GLN LEU TYR TYR THR LYS VAL ASP THR SER ASP ASN ASN SEQRES 18 A 571 THR ASN HIS GLN LYS LEU ALA SER ALA THR VAL TYR LEU SEQRES 19 A 571 ASN LEU GLU LYS ASP GLN ASP LYS ILE SER ILE ALA HIS SEQRES 20 A 571 VAL ASP ASN ASP HIS ILE VAL PHE GLU GLY ASP GLY TYR SEQRES 21 A 571 HIS TYR GLN THR TYR ASP GLN TRP LYS GLU THR ASN LYS SEQRES 22 A 571 GLY ALA ASP ASN ILE ALA MET ARG ASP ALA HIS VAL ILE SEQRES 23 A 571 ASP ASP ASP ASN GLY ASN ARG TYR LEU VAL PHE GLU ALA SEQRES 24 A 571 SER THR GLY THR GLU ASN TYR GLN GLY ASP ASP GLN ILE SEQRES 25 A 571 TYR GLN TRP LEU ASN TYR GLY GLY THR ASN LYS ASP ASN SEQRES 26 A 571 LEU GLY ASP PHE PHE GLN ILE LEU SER ASN SER ASP ILE SEQRES 27 A 571 LYS ASP ARG ALA LYS TRP SER ASN ALA ALA ILE GLY ILE SEQRES 28 A 571 ILE LYS LEU ASN ASP ASP VAL LYS ASN PRO SER VAL ALA SEQRES 29 A 571 LYS VAL TYR SER PRO LEU ILE SER ALA PRO MET VAL SER SEQRES 30 A 571 ASP GLU ILE GLU ARG PRO ASP VAL VAL LYS LEU GLY ASN SEQRES 31 A 571 LYS TYR TYR LEU PHE ALA ALA THR ARG LEU ASN ARG GLY SEQRES 32 A 571 SER ASN ASP ASP ALA TRP MET ALA THR ASN LYS ALA VAL SEQRES 33 A 571 GLY ASP ASN VAL ALA MET ILE GLY TYR VAL SER ASP ASN SEQRES 34 A 571 LEU THR HIS GLY TYR VAL PRO LEU ASN GLU SER GLY VAL SEQRES 35 A 571 VAL LEU THR ALA SER VAL PRO ALA ASN TRP ARG THR ALA SEQRES 36 A 571 THR TYR SER TYR TYR ALA VAL PRO VAL GLU GLY ARG ASP SEQRES 37 A 571 ASP GLN LEU LEU ILE THR SER TYR ILE THR ASN ARG GLY SEQRES 38 A 571 GLU VAL ALA GLY LYS GLY MET HIS ALA THR TRP ALA PRO SEQRES 39 A 571 SER PHE LEU LEU GLN ILE ASN PRO ASP ASN THR THR THR SEQRES 40 A 571 VAL LEU ALA LYS MET THR ASN GLN GLY ASP TRP ILE TRP SEQRES 41 A 571 ASP ASP SER SER GLU ASN PRO ASP MET MET GLY VAL LEU SEQRES 42 A 571 GLU LYS ASP ALA PRO ASN SER ALA ALA LEU PRO GLY GLU SEQRES 43 A 571 TRP GLY LYS PRO VAL ASP TRP ASP LEU ILE GLY GLY TYR SEQRES 44 A 571 ASN LEU LYS PRO HIS GLN HIS HIS HIS HIS HIS HIS HET GLC B 1 11 HET FRU B 2 12 HET GLC C 1 11 HET FRU C 2 12 HET CA A1711 1 HET CA A1712 1 HET SO4 A1713 5 HET SO4 A1714 5 HET SO4 A1715 5 HET SO4 A1716 5 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 2 GLC 2(C6 H12 O6) FORMUL 2 FRU 2(C6 H12 O6) FORMUL 4 CA 2(CA 2+) FORMUL 6 SO4 4(O4 S 2-) FORMUL 10 HOH *101(H2 O) HELIX 1 1 GLY A 181 GLY A 191 1 11 HELIX 2 2 ASP A 193 LEU A 197 5 5 HELIX 3 3 THR A 198 ASN A 206 1 9 HELIX 4 4 THR A 221 GLN A 235 1 15 HELIX 5 5 ASN A 245 ILE A 249 5 5 HELIX 6 6 MET A 252 ALA A 254 5 3 HELIX 7 7 ASP A 318 TRP A 322 5 5 HELIX 8 8 LYS A 381 ASP A 384 5 4 HELIX 9 9 THR A 407 ASN A 415 1 9 HELIX 10 10 GLY A 451 TYR A 456 5 6 HELIX 11 11 TRP A 458 TYR A 461 5 4 HELIX 12 12 THR A 464 ASN A 478 1 15 HELIX 13 13 ASN A 478 SER A 488 1 11 HELIX 14 14 ASN A 548 GLY A 560 1 13 HELIX 15 15 ASN A 622 VAL A 626 5 5 HELIX 16 16 ASP A 664 SER A 667 5 4 HELIX 17 17 ASN A 669 MET A 672 5 4 SHEET 1 AA 4 THR A 218 GLN A 219 0 SHEET 2 AA 4 ILE A 514 SER A 515 1 N SER A 515 O THR A 218 SHEET 3 AA 4 ALA A 490 LEU A 497 -1 N ILE A 492 O ILE A 514 SHEET 4 AA 4 VAL A 506 VAL A 509 -1 N ALA A 507 O LYS A 496 SHEET 1 AB 5 THR A 218 GLN A 219 0 SHEET 2 AB 5 ILE A 514 SER A 515 1 N SER A 515 O THR A 218 SHEET 3 AB 5 ALA A 490 LEU A 497 -1 N ILE A 492 O ILE A 514 SHEET 4 AB 5 ARG A 436 SER A 443 -1 O ARG A 436 N LEU A 497 SHEET 5 AB 5 ARG A 424 ASP A 430 -1 O ARG A 424 N GLU A 441 SHEET 1 AC 2 VAL A 506 VAL A 509 0 SHEET 2 AC 2 ALA A 490 LEU A 497 -1 O LYS A 496 N ALA A 507 SHEET 1 AD 2 LYS A 256 LEU A 258 0 SHEET 2 AD 2 VAL A 265 ASP A 267 -1 O GLU A 266 N THR A 257 SHEET 1 AE 4 GLU A 269 PRO A 275 0 SHEET 2 AE 4 TYR A 290 GLY A 298 -1 O ILE A 294 N TRP A 274 SHEET 3 AE 4 HIS A 306 LYS A 313 -1 O HIS A 306 N MET A 297 SHEET 4 AE 4 LYS A 323 PRO A 327 -1 O LYS A 323 N TYR A 311 SHEET 1 AF 4 ILE A 336 LEU A 345 0 SHEET 2 AF 4 ILE A 351 ASP A 359 -1 O GLN A 352 N THR A 344 SHEET 3 AF 4 HIS A 367 GLU A 380 -1 O HIS A 367 N ASP A 359 SHEET 4 AF 4 LYS A 385 PHE A 398 -1 O LYS A 385 N GLU A 380 SHEET 1 AG 4 ILE A 523 LEU A 531 0 SHEET 2 AG 4 LYS A 534 ARG A 542 -1 O LYS A 534 N LEU A 531 SHEET 3 AG 4 VAL A 563 SER A 570 -1 O ALA A 564 N THR A 541 SHEET 4 AG 4 VAL A 578 PRO A 579 1 O VAL A 578 N VAL A 569 SHEET 1 AH 4 ILE A 523 LEU A 531 0 SHEET 2 AH 4 LYS A 534 ARG A 542 -1 O LYS A 534 N LEU A 531 SHEET 3 AH 4 VAL A 563 SER A 570 -1 O ALA A 564 N THR A 541 SHEET 4 AH 4 VAL A 585 THR A 588 -1 N VAL A 586 O MET A 565 SHEET 1 AI 2 VAL A 578 PRO A 579 0 SHEET 2 AI 2 VAL A 563 SER A 570 1 O VAL A 569 N VAL A 578 SHEET 1 AJ 2 THR A 599 VAL A 607 0 SHEET 2 AJ 2 ARG A 610 ILE A 620 -1 N ARG A 610 O VAL A 607 SHEET 1 AK 2 THR A 634 TRP A 635 0 SHEET 2 AK 2 ARG A 610 ILE A 620 1 O ILE A 620 N THR A 634 SHEET 1 AL 4 THR A 648 GLN A 658 0 SHEET 2 AL 4 PRO A 637 ASN A 644 -1 O SER A 638 N THR A 656 SHEET 3 AL 4 ARG A 610 ILE A 620 -1 O ASP A 612 N ILE A 643 SHEET 4 AL 4 THR A 634 TRP A 635 1 O THR A 634 N ILE A 620 SHEET 1 AM 4 THR A 648 GLN A 658 0 SHEET 2 AM 4 PRO A 637 ASN A 644 -1 O SER A 638 N THR A 656 SHEET 3 AM 4 ARG A 610 ILE A 620 -1 O ASP A 612 N ILE A 643 SHEET 4 AM 4 THR A 599 VAL A 607 -1 O TYR A 600 N TYR A 619 LINK C1 GLC B 1 O2 FRU B 2 1555 1555 1.45 LINK C1 GLC C 1 O2 FRU C 2 1555 1555 1.45 LINK OD1 ASN A 317 CA CA A1712 1555 1555 2.13 LINK OD1 ASP A 419 CA CA A1711 1555 1555 2.54 LINK OE1 GLN A 450 CA CA A1711 1555 1555 2.53 LINK O TRP A 487 CA CA A1711 1555 1555 2.38 LINK OD1 ASN A 489 CA CA A1711 1555 1555 2.37 LINK OD1 ASP A 521 CA CA A1711 1555 1555 2.89 LINK OD2 ASP A 521 CA CA A1711 1555 1555 3.05 LINK OD2 ASP A 660 CA CA A1712 1555 1555 2.37 LINK OD1 ASP A 660 CA CA A1712 1555 1555 2.43 LINK O ILE A 662 CA CA A1712 1555 1555 2.40 LINK OG SER A 667 CA CA A1712 1555 1555 2.37 LINK CA CA A1712 O HOH A2029 1555 1555 2.35 LINK CA CA A1712 O HOH A2092 1555 1555 2.37 CRYST1 171.951 171.951 116.503 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005816 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005816 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008583 0.00000