HEADER MEMBRANE PROTEIN 11-APR-11 2YFY TITLE SERCA IN THE HNE2 STATE COMPLEXED WITH DEBUTANOYL TITLE 2 THAPSIGARGIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-994; COMPND 5 SYNONYM: SERCA1, SR CA(2+)-ATPASE 1, CALCIUM PUMP 1, CALCIUM- COMPND 6 TRANSPORTING ATPASE SARCOPLASMIC RETICULUM TYPE\,FAST TWITCH COMPND 7 SKELETAL MUSCLE ISOFORM, ENDOPLASMIC RETICULUM CLASS 1/2 CA(2+) COMPND 8 ATPASE; COMPND 9 EC: 3.6.3.8 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: FAST TWITCH SKELETAL MUSCLE KEYWDS MEMBRANE PROTEIN, SERCA, P-TYPE ATPASE, PROSTATE CANCER, HYDROLASE, KEYWDS 2 ION TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR Y.SONNTAG,M.MUSGAARD,C.OLESEN,B.SCHIOTT,J.V.MOLLER,P.NISSEN, AUTHOR 2 L.THOGERSEN REVDAT 1 29-JUN-11 2YFY 0 JRNL AUTH Y.SONNTAG,M.MUSGAARD,C.OLESEN,B.SCHIOTT,J.V.MOLLER,P.NISSEN, JRNL AUTH 2 L.THOGERSEN JRNL TITL MUTUAL ADAPTATION OF A MEMBRANE PROTEIN AND ITS LIPID JRNL TITL 2 BILAYER DURING CONFORMATIONAL CHANGES. JRNL REF NAT.COMMUN. V. 2 304 2011 JRNL REFN ISSN 2041-1723 JRNL PMID 21556058 JRNL DOI 10.1038/NCOMMS1307 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.684 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.99 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.96 REMARK 3 NUMBER OF REFLECTIONS : 29224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.2405 REMARK 3 R VALUE (WORKING SET) : 0.2393 REMARK 3 FREE R VALUE : 0.2775 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.9 REMARK 3 FREE R VALUE TEST SET COUNT : 848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.6939 - 5.6317 1.00 5093 161 0.2091 0.2439 REMARK 3 2 5.6317 - 4.4705 1.00 4743 159 0.2103 0.2781 REMARK 3 3 4.4705 - 3.9056 1.00 4694 138 0.2270 0.2690 REMARK 3 4 3.9056 - 3.5485 1.00 4663 127 0.2751 0.3170 REMARK 3 5 3.5485 - 3.2942 1.00 4627 138 0.3244 0.3313 REMARK 3 6 3.2942 - 3.1000 1.00 4556 125 0.3706 0.4027 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 1.01 REMARK 3 K_SOL : 0.297 REMARK 3 B_SOL : 58.804 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.43 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 92.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 90.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.3632 REMARK 3 B22 (A**2) : 8.3632 REMARK 3 B33 (A**2) : -16.7265 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7856 REMARK 3 ANGLE : 0.737 10660 REMARK 3 CHIRALITY : 0.049 1243 REMARK 3 PLANARITY : 0.003 1359 REMARK 3 DIHEDRAL : 17.923 2992 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 1:43 OR RESID 123:228) OR REMARK 3 (CHAIN E AND RESID 1) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0881 34.0768 129.7675 REMARK 3 T TENSOR REMARK 3 T11: 0.5791 T22: 0.6287 REMARK 3 T33: 0.7677 T12: -0.0365 REMARK 3 T13: -0.0987 T23: -0.0699 REMARK 3 L TENSOR REMARK 3 L11: 1.3656 L22: 1.5053 REMARK 3 L33: 1.6495 L12: -0.2501 REMARK 3 L13: 0.3566 L23: -0.2051 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: 0.0867 S13: 0.2408 REMARK 3 S21: 0.2063 S22: 0.1373 S23: -0.1367 REMARK 3 S31: 0.0037 S32: 0.1453 S33: -0.0620 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 44:122 OR RESID 229:329) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0438 20.7956 83.3278 REMARK 3 T TENSOR REMARK 3 T11: 0.8493 T22: 0.9178 REMARK 3 T33: 0.6150 T12: -0.0138 REMARK 3 T13: 0.0152 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: -0.3852 L22: -0.1854 REMARK 3 L33: 0.8106 L12: -0.5498 REMARK 3 L13: 0.5897 L23: -0.0563 REMARK 3 S TENSOR REMARK 3 S11: 0.0653 S12: -0.1141 S13: 0.0303 REMARK 3 S21: -0.0251 S22: -0.2782 S23: -0.0559 REMARK 3 S31: 0.0235 S32: 0.0204 S33: 0.1838 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 330:359 OR RESID 605:745) REMARK 3 OR (CHAIN B AND RESID 1) OR (CHAIN D AND REMARK 3 RESID 1) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0319 24.8722 118.4764 REMARK 3 T TENSOR REMARK 3 T11: 0.5737 T22: 0.7683 REMARK 3 T33: 0.6693 T12: -0.0340 REMARK 3 T13: -0.0240 T23: -0.1378 REMARK 3 L TENSOR REMARK 3 L11: 0.7554 L22: 0.4776 REMARK 3 L33: 1.7049 L12: -0.0733 REMARK 3 L13: 0.4668 L23: 0.3607 REMARK 3 S TENSOR REMARK 3 S11: -0.1259 S12: 0.3589 S13: -0.1389 REMARK 3 S21: 0.0747 S22: 0.0206 S23: 0.0871 REMARK 3 S31: 0.1255 S32: -0.4290 S33: 0.0765 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 360:604 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8034 45.2632 146.3744 REMARK 3 T TENSOR REMARK 3 T11: 0.5019 T22: 0.7204 REMARK 3 T33: 0.6709 T12: 0.0395 REMARK 3 T13: -0.1024 T23: -0.1312 REMARK 3 L TENSOR REMARK 3 L11: 2.1182 L22: 1.2479 REMARK 3 L33: 3.0527 L12: -0.1325 REMARK 3 L13: 0.2981 L23: 0.4431 REMARK 3 S TENSOR REMARK 3 S11: -0.0537 S12: -0.4624 S13: 0.3713 REMARK 3 S21: -0.0269 S22: -0.0965 S23: -0.1055 REMARK 3 S31: -0.2819 S32: -0.1700 S33: 0.1399 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESID 746:994 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8249 21.2013 73.3385 REMARK 3 T TENSOR REMARK 3 T11: 0.8115 T22: 1.1549 REMARK 3 T33: 0.5760 T12: 0.0474 REMARK 3 T13: -0.0781 T23: -0.1072 REMARK 3 L TENSOR REMARK 3 L11: -0.2085 L22: 0.6078 REMARK 3 L33: 2.1721 L12: 0.0848 REMARK 3 L13: 0.0888 L23: 0.3939 REMARK 3 S TENSOR REMARK 3 S11: 0.0910 S12: 0.0097 S13: 0.0225 REMARK 3 S21: -0.2804 S22: -0.2166 S23: -0.0407 REMARK 3 S31: 0.2597 S32: -0.4982 S33: 0.1149 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YFY COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-APR-11. REMARK 100 THE PDBE ID CODE IS EBI-47984. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0718414 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29230 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.10 REMARK 200 RESOLUTION RANGE LOW (A) : 60.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.5 REMARK 200 R MERGE (I) : 0.10 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.1 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.9 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.4 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM REMARK 280 12% GLYCEROL, 17% PEG 6000, 0.2 M NACL, 6% MPD. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 293.95500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.68000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.68000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 146.97750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.68000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.68000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 440.93250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.68000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.68000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 146.97750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.68000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.68000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 440.93250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 293.95500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB CYS A 876 SG CYS A 888 1.80 REMARK 500 SG CYS A 876 CB CYS A 888 1.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 -173.19 172.79 REMARK 500 ALA A 3 74.34 -106.47 REMARK 500 PRO A 42 159.49 -42.75 REMARK 500 TRP A 50 -13.60 -49.79 REMARK 500 ASN A 275 41.67 -103.71 REMARK 500 SER A 335 119.01 73.78 REMARK 500 LYS A 352 -71.01 -68.66 REMARK 500 THR A 355 -66.98 -95.10 REMARK 500 PRO A 391 61.70 -64.93 REMARK 500 CYS A 420 33.87 -83.20 REMARK 500 ASN A 453 107.05 -39.61 REMARK 500 LYS A 502 156.55 94.03 REMARK 500 ALA A 506 73.11 -60.42 REMARK 500 VAL A 508 1.59 45.28 REMARK 500 ASP A 738 8.99 59.44 REMARK 500 TYR A 858 21.23 46.88 REMARK 500 VAL A 865 42.64 -82.33 REMARK 500 THR A 866 -89.14 20.14 REMARK 500 HIS A 872 40.95 -77.03 REMARK 500 PHE A 883 -20.43 76.25 REMARK 500 GLU A 884 72.92 -106.32 REMARK 500 ALA A 893 141.83 -36.62 REMARK 500 LYS A 958 47.32 76.86 REMARK 500 ALA A 961 150.86 -48.47 REMARK 500 ALA A 988 -73.71 -59.23 REMARK 500 ARG A 989 5.57 -63.67 REMARK 500 ASN A 990 -80.65 -124.62 REMARK 500 LEU A 992 -163.39 -65.64 REMARK 500 GLU A 993 -146.12 -66.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9TN A1995 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A1996 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1997 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IWO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SR CA2+-ATPASE IN THE REMARK 900 ABSENCE OFCA2+ REMARK 900 RELATED ID: 2C9M RELATED DB: PDB REMARK 900 STRUCTURE OF (SR) CALCIUM-ATPASE IN THE CA2E1 STATE REMARK 900 SOLVED IN A P1 CRYSTAL FORM. REMARK 900 RELATED ID: 1T5S RELATED DB: PDB REMARK 900 STRUCTURE OF THE (SR)CA2+-ATPASE CA2-E1-AMPPCP FORM REMARK 900 RELATED ID: 1VFP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SR CA2+-ATPASE WITH BOUND REMARK 900 AMPPCP REMARK 900 RELATED ID: 2C88 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF (SR) CALCIUM-ATPASE E2(TG):AMPPCP REMARK 900 FORM REMARK 900 RELATED ID: 1XP5 RELATED DB: PDB REMARK 900 STRUCTURE OF THE (SR)CA2+-ATPASE E2-ALF4- FORM REMARK 900 RELATED ID: 2AGV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SR CA2+-ATPASE WITH BHQ AND TG REMARK 900 RELATED ID: 1WPG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SR CA2+-ATPASE WITH MGF4 REMARK 900 RELATED ID: 1SU4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CALCIUM ATPASE WITH TWO BOUND REMARK 900 CALCIUMIONS REMARK 900 RELATED ID: 2C8L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF (SR) CALCIUM-ATPASE E2(TG) FORM REMARK 900 RELATED ID: 1FQU RELATED DB: PDB REMARK 900 STRUCTURE OF CALCIUM ATPASE IN THE ABSENCE OF CALCIUM REMARK 900 IONS REMARK 900 RELATED ID: 1KJU RELATED DB: PDB REMARK 900 CA2+-ATPASE IN THE E2 STATE REMARK 900 RELATED ID: 1T5T RELATED DB: PDB REMARK 900 STRUCTURE OF THE (SR)CA2+-ATPASE CA2-E1-ADP:ALF4- REMARK 900 FORM REMARK 900 RELATED ID: 2BY4 RELATED DB: PDB REMARK 900 SR CA(2+)-ATPASE IN THE HNE2 STATE COMPLEXED WITH REMARK 900 THE THAPSIGARGIN DERIVATIVE BOC-12ADT. REMARK 900 RELATED ID: 2C8K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF (SR) CALCIUM-ATPASE E2(TG) WITH REMARK 900 PARTIALLY OCCUPIED AMPPCP SITE REMARK 900 RELATED ID: 2VOY RELATED DB: PDB REMARK 900 CRYOEM MODEL OF COPA, THE COPPER TRANSPORTING ATPASE REMARK 900 FROM ARCHAEOGLOBUS FULGIDUS DBREF 2YFY A 1 994 UNP P04191 AT2A1_RABIT 1 994 SEQRES 1 A 994 MET GLU ALA ALA HIS SER LYS SER THR GLU GLU CYS LEU SEQRES 2 A 994 ALA TYR PHE GLY VAL SER GLU THR THR GLY LEU THR PRO SEQRES 3 A 994 ASP GLN VAL LYS ARG HIS LEU GLU LYS TYR GLY HIS ASN SEQRES 4 A 994 GLU LEU PRO ALA GLU GLU GLY LYS SER LEU TRP GLU LEU SEQRES 5 A 994 VAL ILE GLU GLN PHE GLU ASP LEU LEU VAL ARG ILE LEU SEQRES 6 A 994 LEU LEU ALA ALA CYS ILE SER PHE VAL LEU ALA TRP PHE SEQRES 7 A 994 GLU GLU GLY GLU GLU THR ILE THR ALA PHE VAL GLU PRO SEQRES 8 A 994 PHE VAL ILE LEU LEU ILE LEU ILE ALA ASN ALA ILE VAL SEQRES 9 A 994 GLY VAL TRP GLN GLU ARG ASN ALA GLU ASN ALA ILE GLU SEQRES 10 A 994 ALA LEU LYS GLU TYR GLU PRO GLU MET GLY LYS VAL TYR SEQRES 11 A 994 ARG ALA ASP ARG LYS SER VAL GLN ARG ILE LYS ALA ARG SEQRES 12 A 994 ASP ILE VAL PRO GLY ASP ILE VAL GLU VAL ALA VAL GLY SEQRES 13 A 994 ASP LYS VAL PRO ALA ASP ILE ARG ILE LEU SER ILE LYS SEQRES 14 A 994 SER THR THR LEU ARG VAL ASP GLN SER ILE LEU THR GLY SEQRES 15 A 994 GLU SER VAL SER VAL ILE LYS HIS THR GLU PRO VAL PRO SEQRES 16 A 994 ASP PRO ARG ALA VAL ASN GLN ASP LYS LYS ASN MET LEU SEQRES 17 A 994 PHE SER GLY THR ASN ILE ALA ALA GLY LYS ALA LEU GLY SEQRES 18 A 994 ILE VAL ALA THR THR GLY VAL SER THR GLU ILE GLY LYS SEQRES 19 A 994 ILE ARG ASP GLN MET ALA ALA THR GLU GLN ASP LYS THR SEQRES 20 A 994 PRO LEU GLN GLN LYS LEU ASP GLU PHE GLY GLU GLN LEU SEQRES 21 A 994 SER LYS VAL ILE SER LEU ILE CYS VAL ALA VAL TRP LEU SEQRES 22 A 994 ILE ASN ILE GLY HIS PHE ASN ASP PRO VAL HIS GLY GLY SEQRES 23 A 994 SER TRP ILE ARG GLY ALA ILE TYR TYR PHE LYS ILE ALA SEQRES 24 A 994 VAL ALA LEU ALA VAL ALA ALA ILE PRO GLU GLY LEU PRO SEQRES 25 A 994 ALA VAL ILE THR THR CYS LEU ALA LEU GLY THR ARG ARG SEQRES 26 A 994 MET ALA LYS LYS ASN ALA ILE VAL ARG SER LEU PRO SER SEQRES 27 A 994 VAL GLU THR LEU GLY CYS THR SER VAL ILE CYS SER ASP SEQRES 28 A 994 LYS THR GLY THR LEU THR THR ASN GLN MET SER VAL CYS SEQRES 29 A 994 LYS MET PHE ILE ILE ASP LYS VAL ASP GLY ASP PHE CYS SEQRES 30 A 994 SER LEU ASN GLU PHE SER ILE THR GLY SER THR TYR ALA SEQRES 31 A 994 PRO GLU GLY GLU VAL LEU LYS ASN ASP LYS PRO ILE ARG SEQRES 32 A 994 SER GLY GLN PHE ASP GLY LEU VAL GLU LEU ALA THR ILE SEQRES 33 A 994 CYS ALA LEU CYS ASN ASP SER SER LEU ASP PHE ASN GLU SEQRES 34 A 994 THR LYS GLY VAL TYR GLU LYS VAL GLY GLU ALA THR GLU SEQRES 35 A 994 THR ALA LEU THR THR LEU VAL GLU LYS MET ASN VAL PHE SEQRES 36 A 994 ASN THR GLU VAL ARG ASN LEU SER LYS VAL GLU ARG ALA SEQRES 37 A 994 ASN ALA CYS ASN SER VAL ILE ARG GLN LEU MET LYS LYS SEQRES 38 A 994 GLU PHE THR LEU GLU PHE SER ARG ASP ARG LYS SER MET SEQRES 39 A 994 SER VAL TYR CYS SER PRO ALA LYS SER SER ARG ALA ALA SEQRES 40 A 994 VAL GLY ASN LYS MET PHE VAL LYS GLY ALA PRO GLU GLY SEQRES 41 A 994 VAL ILE ASP ARG CYS ASN TYR VAL ARG VAL GLY THR THR SEQRES 42 A 994 ARG VAL PRO MET THR GLY PRO VAL LYS GLU LYS ILE LEU SEQRES 43 A 994 SER VAL ILE LYS GLU TRP GLY THR GLY ARG ASP THR LEU SEQRES 44 A 994 ARG CYS LEU ALA LEU ALA THR ARG ASP THR PRO PRO LYS SEQRES 45 A 994 ARG GLU GLU MET VAL LEU ASP ASP SER SER ARG PHE MET SEQRES 46 A 994 GLU TYR GLU THR ASP LEU THR PHE VAL GLY VAL VAL GLY SEQRES 47 A 994 MET LEU ASP PRO PRO ARG LYS GLU VAL MET GLY SER ILE SEQRES 48 A 994 GLN LEU CYS ARG ASP ALA GLY ILE ARG VAL ILE MET ILE SEQRES 49 A 994 THR GLY ASP ASN LYS GLY THR ALA ILE ALA ILE CYS ARG SEQRES 50 A 994 ARG ILE GLY ILE PHE GLY GLU ASN GLU GLU VAL ALA ASP SEQRES 51 A 994 ARG ALA TYR THR GLY ARG GLU PHE ASP ASP LEU PRO LEU SEQRES 52 A 994 ALA GLU GLN ARG GLU ALA CYS ARG ARG ALA CYS CYS PHE SEQRES 53 A 994 ALA ARG VAL GLU PRO SER HIS LYS SER LYS ILE VAL GLU SEQRES 54 A 994 TYR LEU GLN SER TYR ASP GLU ILE THR ALA MET THR GLY SEQRES 55 A 994 ASP GLY VAL ASN ASP ALA PRO ALA LEU LYS LYS ALA GLU SEQRES 56 A 994 ILE GLY ILE ALA MET GLY SER GLY THR ALA VAL ALA LYS SEQRES 57 A 994 THR ALA SER GLU MET VAL LEU ALA ASP ASP ASN PHE SER SEQRES 58 A 994 THR ILE VAL ALA ALA VAL GLU GLU GLY ARG ALA ILE TYR SEQRES 59 A 994 ASN ASN MET LYS GLN PHE ILE ARG TYR LEU ILE SER SER SEQRES 60 A 994 ASN VAL GLY GLU VAL VAL CYS ILE PHE LEU THR ALA ALA SEQRES 61 A 994 LEU GLY LEU PRO GLU ALA LEU ILE PRO VAL GLN LEU LEU SEQRES 62 A 994 TRP VAL ASN LEU VAL THR ASP GLY LEU PRO ALA THR ALA SEQRES 63 A 994 LEU GLY PHE ASN PRO PRO ASP LEU ASP ILE MET ASP ARG SEQRES 64 A 994 PRO PRO ARG SER PRO LYS GLU PRO LEU ILE SER GLY TRP SEQRES 65 A 994 LEU PHE PHE ARG TYR MET ALA ILE GLY GLY TYR VAL GLY SEQRES 66 A 994 ALA ALA THR VAL GLY ALA ALA ALA TRP TRP PHE MET TYR SEQRES 67 A 994 ALA GLU ASP GLY PRO GLY VAL THR TYR HIS GLN LEU THR SEQRES 68 A 994 HIS PHE MET GLN CYS THR GLU ASP HIS PRO HIS PHE GLU SEQRES 69 A 994 GLY LEU ASP CYS GLU ILE PHE GLU ALA PRO GLU PRO MET SEQRES 70 A 994 THR MET ALA LEU SER VAL LEU VAL THR ILE GLU MET CYS SEQRES 71 A 994 ASN ALA LEU ASN SER LEU SER GLU ASN GLN SER LEU MET SEQRES 72 A 994 ARG MET PRO PRO TRP VAL ASN ILE TRP LEU LEU GLY SER SEQRES 73 A 994 ILE CYS LEU SER MET SER LEU HIS PHE LEU ILE LEU TYR SEQRES 74 A 994 VAL ASP PRO LEU PRO MET ILE PHE LYS LEU LYS ALA LEU SEQRES 75 A 994 ASP LEU THR GLN TRP LEU MET VAL LEU LYS ILE SER LEU SEQRES 76 A 994 PRO VAL ILE GLY LEU ASP GLU ILE LEU LYS PHE ILE ALA SEQRES 77 A 994 ARG ASN TYR LEU GLU GLY HET 9TN A1995 41 HET K A1996 1 HET MG A1997 1 HETNAM MG MAGNESIUM ION HETNAM 9TN (3S,3AR,4S,6S,6AR,7S,8S,9BS)-6-(ACETYLOXY)-3, HETNAM K POTASSIUM ION HETSYN 9TN DEBUTANOYL THAPSIGARGIN FORMUL 2 MG MG 2+ FORMUL 3 9TN C30 H45 O11 HELIX 1 1 SER A 8 GLY A 17 1 10 HELIX 2 2 THR A 25 GLY A 37 1 13 HELIX 3 3 SER A 48 PHE A 57 1 10 HELIX 4 4 ASP A 59 ALA A 76 1 18 HELIX 5 5 ILE A 85 ALA A 87 5 3 HELIX 6 6 PHE A 88 ALA A 112 1 25 HELIX 7 7 ASN A 114 LYS A 120 1 7 HELIX 8 8 GLU A 121 GLU A 123 5 3 HELIX 9 9 ARG A 143 ILE A 145 5 3 HELIX 10 10 GLN A 177 GLY A 182 1 6 HELIX 11 11 VAL A 200 LYS A 204 5 5 HELIX 12 12 THR A 226 SER A 229 5 4 HELIX 13 13 THR A 230 THR A 242 1 13 HELIX 14 14 THR A 247 ASN A 275 1 29 HELIX 15 15 ILE A 276 ASN A 280 5 5 HELIX 16 16 SER A 287 ILE A 307 1 21 HELIX 17 17 GLY A 310 LYS A 329 1 20 HELIX 18 18 PRO A 337 THR A 345 1 9 HELIX 19 19 ARG A 403 GLN A 406 5 4 HELIX 20 20 PHE A 407 CYS A 420 1 14 HELIX 21 21 GLU A 439 MET A 452 1 14 HELIX 22 22 SER A 463 ALA A 468 1 6 HELIX 23 23 ASN A 469 LEU A 478 1 10 HELIX 24 24 ALA A 517 ARG A 524 1 8 HELIX 25 25 THR A 538 GLY A 555 1 18 HELIX 26 26 LYS A 572 MET A 576 5 5 HELIX 27 27 ASP A 580 SER A 582 5 3 HELIX 28 28 ARG A 583 GLU A 588 1 6 HELIX 29 29 GLU A 606 GLY A 618 1 13 HELIX 30 30 ASN A 628 ILE A 639 1 12 HELIX 31 31 GLY A 655 LEU A 661 1 7 HELIX 32 32 PRO A 662 ALA A 673 1 12 HELIX 33 33 SER A 682 TYR A 694 1 13 HELIX 34 34 ASP A 707 LYS A 712 1 6 HELIX 35 35 THR A 724 SER A 731 1 8 HELIX 36 36 ASN A 739 GLY A 782 1 44 HELIX 37 37 ILE A 788 VAL A 798 1 11 HELIX 38 38 ASP A 800 GLY A 808 1 9 HELIX 39 39 ASP A 815 ARG A 819 5 5 HELIX 40 40 SER A 830 MET A 857 1 28 HELIX 41 41 GLN A 869 PHE A 873 5 5 HELIX 42 42 CYS A 888 ALA A 893 5 6 HELIX 43 43 PRO A 894 SER A 915 1 22 HELIX 44 44 PRO A 926 VAL A 929 5 4 HELIX 45 45 ASN A 930 VAL A 950 1 21 HELIX 46 46 ASP A 951 LYS A 958 1 8 HELIX 47 47 ASP A 963 LEU A 975 1 13 HELIX 48 48 LEU A 975 ALA A 988 1 14 SHEET 1 AA 6 ARG A 134 LYS A 141 0 SHEET 2 AA 6 MET A 126 ARG A 131 -1 O GLY A 127 N ILE A 140 SHEET 3 AA 6 ILE A 150 ALA A 154 -1 O ILE A 150 N TYR A 130 SHEET 4 AA 6 LYS A 218 THR A 225 -1 O ALA A 219 N VAL A 153 SHEET 5 AA 6 ASP A 162 ILE A 168 -1 O ASP A 162 N ALA A 224 SHEET 6 AA 6 MET A 207 LEU A 208 -1 O LEU A 208 N ILE A 163 SHEET 1 AB 3 SER A 186 ILE A 188 0 SHEET 2 AB 3 ARG A 174 ASP A 176 -1 O VAL A 175 N VAL A 187 SHEET 3 AB 3 ASN A 213 ALA A 216 -1 O ASN A 213 N ASP A 176 SHEET 1 AC 8 ALA A 331 VAL A 333 0 SHEET 2 AC 8 MET A 733 LEU A 735 -1 O VAL A 734 N ILE A 332 SHEET 3 AC 8 ILE A 716 MET A 720 1 O ALA A 719 N LEU A 735 SHEET 4 AC 8 THR A 698 GLY A 702 1 O THR A 698 N ILE A 716 SHEET 5 AC 8 VAL A 347 ASP A 351 1 O VAL A 347 N ALA A 699 SHEET 6 AC 8 ARG A 620 THR A 625 1 O ARG A 620 N ILE A 348 SHEET 7 AC 8 CYS A 675 ALA A 677 1 O PHE A 676 N THR A 625 SHEET 8 AC 8 ALA A 652 THR A 654 1 O TYR A 653 N ALA A 677 SHEET 1 AD 6 LYS A 400 PRO A 401 0 SHEET 2 AD 6 VAL A 395 LYS A 397 -1 O LYS A 397 N LYS A 400 SHEET 3 AD 6 PHE A 376 ILE A 384 -1 O SER A 383 N LEU A 396 SHEET 4 AD 6 SER A 362 ASP A 373 -1 O CYS A 364 N ILE A 384 SHEET 5 AD 6 CYS A 525 VAL A 530 0 SHEET 6 AD 6 THR A 533 PRO A 536 -1 O THR A 533 N VAL A 530 SHEET 1 AE 9 LYS A 400 PRO A 401 0 SHEET 2 AE 9 VAL A 395 LYS A 397 -1 O LYS A 397 N LYS A 400 SHEET 3 AE 9 PHE A 376 ILE A 384 -1 O SER A 383 N LEU A 396 SHEET 4 AE 9 SER A 362 ASP A 373 -1 O CYS A 364 N ILE A 384 SHEET 5 AE 9 LEU A 591 LEU A 600 -1 O VAL A 594 N ILE A 369 SHEET 6 AE 9 ARG A 560 ARG A 567 -1 O ARG A 560 N MET A 599 SHEET 7 AE 9 LYS A 511 GLY A 516 -1 O MET A 512 N ARG A 567 SHEET 8 AE 9 SER A 493 PRO A 500 -1 O MET A 494 N LYS A 515 SHEET 9 AE 9 MET A 479 LEU A 485 -1 O LYS A 480 N SER A 499 SHEET 1 AF10 LYS A 400 PRO A 401 0 SHEET 2 AF10 VAL A 395 LYS A 397 -1 O LYS A 397 N LYS A 400 SHEET 3 AF10 PHE A 376 ILE A 384 -1 O SER A 383 N LEU A 396 SHEET 4 AF10 SER A 362 ASP A 373 -1 O CYS A 364 N ILE A 384 SHEET 5 AF10 CYS A 525 VAL A 530 0 SHEET 6 AF10 LEU A 591 LEU A 600 1 O LEU A 591 N ASN A 526 SHEET 7 AF10 ARG A 560 ARG A 567 -1 O ARG A 560 N MET A 599 SHEET 8 AF10 LYS A 511 GLY A 516 -1 O MET A 512 N ARG A 567 SHEET 9 AF10 SER A 493 PRO A 500 -1 O MET A 494 N LYS A 515 SHEET 10 AF10 MET A 479 LEU A 485 -1 O LYS A 480 N SER A 499 SHEET 1 AG 7 LYS A 400 PRO A 401 0 SHEET 2 AG 7 VAL A 395 LYS A 397 -1 O LYS A 397 N LYS A 400 SHEET 3 AG 7 PHE A 376 ILE A 384 -1 O SER A 383 N LEU A 396 SHEET 4 AG 7 SER A 362 ASP A 373 -1 O CYS A 364 N ILE A 384 SHEET 5 AG 7 LEU A 591 LEU A 600 -1 O VAL A 594 N ILE A 369 SHEET 6 AG 7 CYS A 525 VAL A 530 1 N ASN A 526 O LEU A 591 SHEET 7 AG 7 THR A 533 PRO A 536 -1 O THR A 533 N VAL A 530 SHEET 1 AH 2 LEU A 425 ASN A 428 0 SHEET 2 AH 2 VAL A 433 LYS A 436 -1 O VAL A 433 N ASN A 428 SSBOND 1 CYS A 876 CYS A 888 1555 1555 1.97 LINK CD1 PHE A 834 OAH 9TN A1995 1555 1555 1.72 SITE 1 AC1 12 GLU A 255 LEU A 260 VAL A 263 ILE A 267 SITE 2 AC1 12 ILE A 765 ASN A 768 VAL A 769 VAL A 772 SITE 3 AC1 12 ILE A 829 PHE A 834 TYR A 837 MET A 838 SITE 1 AC2 1 GLU A 715 SITE 1 AC3 2 ASN A 706 ASP A 707 CRYST1 71.360 71.360 587.910 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014013 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014013 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001701 0.00000