data_2YGT # _entry.id 2YGT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YGT pdb_00002ygt 10.2210/pdb2ygt/pdb PDBE EBI-47939 ? ? WWPDB D_1290047939 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YGT _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-04-20 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Huyet, J.' 1 'Naylor, C.E.' 2 'Gibert, M.' 3 'Popoff, M.R.' 4 'Basak, A.K.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structural Insights Into Clostridium Perfringens Delta Toxin Pore Formation.' 'Plos One' 8 66673 ? 2013 ? US 1932-6203 ? ? 23805259 10.1371/JOURNAL.PONE.0066673 1 'Crystallization and Preliminary X-Ray Diffraction Studies of Delta-Toxin from Clostridium Perfringens.' 'Acta Crystallogr.,Sect.F' 67 369 ? 2011 ? DK 1744-3091 ? ? 21393845 10.1107/S1744309110054187 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huyet, J.' 1 ? primary 'Naylor, C.E.' 2 ? primary 'Savva, C.G.' 3 ? primary 'Gibert, M.' 4 ? primary 'Popoff, M.R.' 5 ? primary 'Basak, A.K.' 6 ? 1 'Huyet, J.' 7 ? 1 'Gilbert, M.' 8 ? 1 'Popoff, M.R.' 9 ? 1 'Basak, A.' 10 ? # _cell.entry_id 2YGT _cell.length_a 112.932 _cell.length_b 49.664 _cell.length_c 58.477 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YGT _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DELTA TOXIN' 33629.211 1 ? ? 'RESIDUES 29-318' ? 2 non-polymer syn 'ZINC ION' 65.409 3 ? ? ? ? 3 non-polymer syn IMIDAZOLE 69.085 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 5 water nat water 18.015 224 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSNDLGSKSEIRKEENGNVTIITQNNKQIRKYSSTDSATTKSNSKITVDASFVDDKFSSEMTTIISLKGFIPSGRKIFAL SKYRGVMRWPIKYMVDLKNNSLDSSVKIVDSVPKNTISTKEVNNTISYSIGGGIDTSNKASLNANYAVSKSISYVQPDYN TIQTNDTNSIASWNTEFAETRDGYNVNSWNIVYGNQMFMRSRYSGTSTTNFTPDYQLSSLITGGFSPNFGVVLTAPNGTK KSQIEISLKREINSYHIAWDTEWQGRNYPDSKIEETVKFELDWEKHTIRQISHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;GSNDLGSKSEIRKEENGNVTIITQNNKQIRKYSSTDSATTKSNSKITVDASFVDDKFSSEMTTIISLKGFIPSGRKIFAL SKYRGVMRWPIKYMVDLKNNSLDSSVKIVDSVPKNTISTKEVNNTISYSIGGGIDTSNKASLNANYAVSKSISYVQPDYN TIQTNDTNSIASWNTEFAETRDGYNVNSWNIVYGNQMFMRSRYSGTSTTNFTPDYQLSSLITGGFSPNFGVVLTAPNGTK KSQIEISLKREINSYHIAWDTEWQGRNYPDSKIEETVKFELDWEKHTIRQISHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ASN n 1 4 ASP n 1 5 LEU n 1 6 GLY n 1 7 SER n 1 8 LYS n 1 9 SER n 1 10 GLU n 1 11 ILE n 1 12 ARG n 1 13 LYS n 1 14 GLU n 1 15 GLU n 1 16 ASN n 1 17 GLY n 1 18 ASN n 1 19 VAL n 1 20 THR n 1 21 ILE n 1 22 ILE n 1 23 THR n 1 24 GLN n 1 25 ASN n 1 26 ASN n 1 27 LYS n 1 28 GLN n 1 29 ILE n 1 30 ARG n 1 31 LYS n 1 32 TYR n 1 33 SER n 1 34 SER n 1 35 THR n 1 36 ASP n 1 37 SER n 1 38 ALA n 1 39 THR n 1 40 THR n 1 41 LYS n 1 42 SER n 1 43 ASN n 1 44 SER n 1 45 LYS n 1 46 ILE n 1 47 THR n 1 48 VAL n 1 49 ASP n 1 50 ALA n 1 51 SER n 1 52 PHE n 1 53 VAL n 1 54 ASP n 1 55 ASP n 1 56 LYS n 1 57 PHE n 1 58 SER n 1 59 SER n 1 60 GLU n 1 61 MET n 1 62 THR n 1 63 THR n 1 64 ILE n 1 65 ILE n 1 66 SER n 1 67 LEU n 1 68 LYS n 1 69 GLY n 1 70 PHE n 1 71 ILE n 1 72 PRO n 1 73 SER n 1 74 GLY n 1 75 ARG n 1 76 LYS n 1 77 ILE n 1 78 PHE n 1 79 ALA n 1 80 LEU n 1 81 SER n 1 82 LYS n 1 83 TYR n 1 84 ARG n 1 85 GLY n 1 86 VAL n 1 87 MET n 1 88 ARG n 1 89 TRP n 1 90 PRO n 1 91 ILE n 1 92 LYS n 1 93 TYR n 1 94 MET n 1 95 VAL n 1 96 ASP n 1 97 LEU n 1 98 LYS n 1 99 ASN n 1 100 ASN n 1 101 SER n 1 102 LEU n 1 103 ASP n 1 104 SER n 1 105 SER n 1 106 VAL n 1 107 LYS n 1 108 ILE n 1 109 VAL n 1 110 ASP n 1 111 SER n 1 112 VAL n 1 113 PRO n 1 114 LYS n 1 115 ASN n 1 116 THR n 1 117 ILE n 1 118 SER n 1 119 THR n 1 120 LYS n 1 121 GLU n 1 122 VAL n 1 123 ASN n 1 124 ASN n 1 125 THR n 1 126 ILE n 1 127 SER n 1 128 TYR n 1 129 SER n 1 130 ILE n 1 131 GLY n 1 132 GLY n 1 133 GLY n 1 134 ILE n 1 135 ASP n 1 136 THR n 1 137 SER n 1 138 ASN n 1 139 LYS n 1 140 ALA n 1 141 SER n 1 142 LEU n 1 143 ASN n 1 144 ALA n 1 145 ASN n 1 146 TYR n 1 147 ALA n 1 148 VAL n 1 149 SER n 1 150 LYS n 1 151 SER n 1 152 ILE n 1 153 SER n 1 154 TYR n 1 155 VAL n 1 156 GLN n 1 157 PRO n 1 158 ASP n 1 159 TYR n 1 160 ASN n 1 161 THR n 1 162 ILE n 1 163 GLN n 1 164 THR n 1 165 ASN n 1 166 ASP n 1 167 THR n 1 168 ASN n 1 169 SER n 1 170 ILE n 1 171 ALA n 1 172 SER n 1 173 TRP n 1 174 ASN n 1 175 THR n 1 176 GLU n 1 177 PHE n 1 178 ALA n 1 179 GLU n 1 180 THR n 1 181 ARG n 1 182 ASP n 1 183 GLY n 1 184 TYR n 1 185 ASN n 1 186 VAL n 1 187 ASN n 1 188 SER n 1 189 TRP n 1 190 ASN n 1 191 ILE n 1 192 VAL n 1 193 TYR n 1 194 GLY n 1 195 ASN n 1 196 GLN n 1 197 MET n 1 198 PHE n 1 199 MET n 1 200 ARG n 1 201 SER n 1 202 ARG n 1 203 TYR n 1 204 SER n 1 205 GLY n 1 206 THR n 1 207 SER n 1 208 THR n 1 209 THR n 1 210 ASN n 1 211 PHE n 1 212 THR n 1 213 PRO n 1 214 ASP n 1 215 TYR n 1 216 GLN n 1 217 LEU n 1 218 SER n 1 219 SER n 1 220 LEU n 1 221 ILE n 1 222 THR n 1 223 GLY n 1 224 GLY n 1 225 PHE n 1 226 SER n 1 227 PRO n 1 228 ASN n 1 229 PHE n 1 230 GLY n 1 231 VAL n 1 232 VAL n 1 233 LEU n 1 234 THR n 1 235 ALA n 1 236 PRO n 1 237 ASN n 1 238 GLY n 1 239 THR n 1 240 LYS n 1 241 LYS n 1 242 SER n 1 243 GLN n 1 244 ILE n 1 245 GLU n 1 246 ILE n 1 247 SER n 1 248 LEU n 1 249 LYS n 1 250 ARG n 1 251 GLU n 1 252 ILE n 1 253 ASN n 1 254 SER n 1 255 TYR n 1 256 HIS n 1 257 ILE n 1 258 ALA n 1 259 TRP n 1 260 ASP n 1 261 THR n 1 262 GLU n 1 263 TRP n 1 264 GLN n 1 265 GLY n 1 266 ARG n 1 267 ASN n 1 268 TYR n 1 269 PRO n 1 270 ASP n 1 271 SER n 1 272 LYS n 1 273 ILE n 1 274 GLU n 1 275 GLU n 1 276 THR n 1 277 VAL n 1 278 LYS n 1 279 PHE n 1 280 GLU n 1 281 LEU n 1 282 ASP n 1 283 TRP n 1 284 GLU n 1 285 LYS n 1 286 HIS n 1 287 THR n 1 288 ILE n 1 289 ARG n 1 290 GLN n 1 291 ILE n 1 292 SER n 1 293 HIS n 1 294 HIS n 1 295 HIS n 1 296 HIS n 1 297 HIS n 1 298 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain CP24-03 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'CLOSTRIDIUM PERFRINGENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1502 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant 'CODONPLUS RIL' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET28A _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B8QGZ7_CLOPE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession B8QGZ7 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YGT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 292 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B8QGZ7 _struct_ref_seq.db_align_beg 29 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 318 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 290 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YGT GLY A 1 ? UNP B8QGZ7 ? ? 'expression tag' -1 1 1 2YGT SER A 2 ? UNP B8QGZ7 ? ? 'expression tag' 0 2 1 2YGT HIS A 293 ? UNP B8QGZ7 ? ? 'expression tag' 291 3 1 2YGT HIS A 294 ? UNP B8QGZ7 ? ? 'expression tag' 292 4 1 2YGT HIS A 295 ? UNP B8QGZ7 ? ? 'expression tag' 293 5 1 2YGT HIS A 296 ? UNP B8QGZ7 ? ? 'expression tag' 294 6 1 2YGT HIS A 297 ? UNP B8QGZ7 ? ? 'expression tag' 295 7 1 2YGT HIS A 298 ? UNP B8QGZ7 ? ? 'expression tag' 296 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IMD non-polymer . IMIDAZOLE ? 'C3 H5 N2 1' 69.085 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2YGT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.3 _exptl_crystal.density_percent_sol 47 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '6.6 MG/ML PROTEIN AGAINST 25-30% PEG 550 25 MM ZNSO4, 100 MM MES-NAOH PH 6.0, AT 293K.' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2008-03-05 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111) CUT CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0332 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength 1.0332 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2YGT _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 113.20 _reflns.d_resolution_high 2.40 _reflns.number_obs 13432 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.15 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.80 _reflns.B_iso_Wilson_estimate 38.1 _reflns.pdbx_redundancy 10.4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.53 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.69 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.50 _reflns_shell.pdbx_redundancy 10.6 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2YGT _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13409 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.50 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 58.477 _refine.ls_d_res_high 2.400 _refine.ls_percent_reflns_obs 99.83 _refine.ls_R_factor_obs 0.1812 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1788 _refine.ls_R_factor_R_free 0.2283 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 664 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 29.6 _refine.aniso_B[1][1] 3.9141 _refine.aniso_B[2][2] -2.3899 _refine.aniso_B[3][3] -1.5242 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.370 _refine.solvent_model_param_bsol 48.672 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1PVL' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.78 _refine.pdbx_overall_phase_error 19.80 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2173 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 224 _refine_hist.number_atoms_total 2423 _refine_hist.d_res_high 2.400 _refine_hist.d_res_low 58.477 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 2239 'X-RAY DIFFRACTION' ? f_angle_d 0.772 ? ? 3035 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.930 ? ? 781 'X-RAY DIFFRACTION' ? f_chiral_restr 0.052 ? ? 345 'X-RAY DIFFRACTION' ? f_plane_restr 0.002 ? ? 387 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.4000 2.5853 2470 0.1906 100.00 0.2679 . . 129 . . 'X-RAY DIFFRACTION' . 2.5853 2.8455 2516 0.1845 100.00 0.2712 . . 133 . . 'X-RAY DIFFRACTION' . 2.8455 3.2572 2518 0.1722 100.00 0.2533 . . 135 . . 'X-RAY DIFFRACTION' . 3.2572 4.1036 2533 0.1496 100.00 0.1834 . . 150 . . 'X-RAY DIFFRACTION' . 4.1036 58.4938 2708 0.1746 100.00 0.1969 . . 117 . . # _struct.entry_id 2YGT _struct.title 'Clostridium perfringens delta-toxin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YGT _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text 'TOXIN, BETA-PORE-FORMING TOXIN, HAEMOLYSIN, ENTEROTOXIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 2 ? I N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 101 ? SER A 105 ? SER A 99 SER A 103 5 ? 5 HELX_P HELX_P2 2 PRO A 213 ? LEU A 217 ? PRO A 211 LEU A 215 5 ? 5 HELX_P HELX_P3 3 SER A 218 ? GLY A 223 ? SER A 216 GLY A 221 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 36 OD2 ? ? ? 2_565 H ZN . ZN ? ? A ASP 34 A ZN 1297 1_555 ? ? ? ? ? ? ? 2.488 ? ? metalc2 metalc ? ? A ASP 36 OD1 ? ? ? 2_565 H ZN . ZN ? ? A ASP 34 A ZN 1297 1_555 ? ? ? ? ? ? ? 2.197 ? ? metalc3 metalc ? ? A ASP 54 OD1 ? ? ? 1_555 B ZN . ZN ? ? A ASP 52 A ZN 1291 1_555 ? ? ? ? ? ? ? 2.229 ? ? metalc4 metalc ? ? A ASP 166 OD2 ? ? ? 1_555 C ZN . ZN ? ? A ASP 164 A ZN 1292 1_555 ? ? ? ? ? ? ? 2.226 ? ? metalc5 metalc ? ? A GLU 179 OE2 ? ? ? 3_556 C ZN . ZN ? ? A GLU 177 A ZN 1292 1_555 ? ? ? ? ? ? ? 2.187 ? ? metalc6 metalc ? ? A HIS 286 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 284 A ZN 1291 1_555 ? ? ? ? ? ? ? 2.289 ? ? metalc7 metalc ? ? C ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 1292 A HOH 2080 1_555 ? ? ? ? ? ? ? 2.413 ? ? metalc8 metalc ? ? C ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 1292 A HOH 2082 1_555 ? ? ? ? ? ? ? 2.463 ? ? metalc9 metalc ? ? C ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 1292 A HOH 2134 1_555 ? ? ? ? ? ? ? 2.322 ? ? metalc10 metalc ? ? C ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 1292 A HOH 2141 3_556 ? ? ? ? ? ? ? 2.650 ? ? metalc11 metalc ? ? D IMD . N1 ? ? ? 2_565 H ZN . ZN ? ? A IMD 1293 A ZN 1297 1_555 ? ? ? ? ? ? ? 1.867 ? ? metalc12 metalc ? ? D IMD . N3 ? ? ? 1_555 H ZN . ZN ? ? A IMD 1293 A ZN 1297 1_555 ? ? ? ? ? ? ? 1.853 ? ? metalc13 metalc ? ? D IMD . N1 ? ? ? 1_555 H ZN . ZN ? ? A IMD 1293 A ZN 1297 2_565 ? ? ? ? ? ? ? 1.867 ? ? metalc14 metalc ? ? H ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 1297 A HOH 2219 1_555 ? ? ? ? ? ? ? 2.267 ? ? metalc15 metalc ? ? H ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 1297 A HOH 3001 1_555 ? ? ? ? ? ? ? 2.441 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 VAL 112 A . ? VAL 110 A PRO 113 A ? PRO 111 A 1 1.83 2 SER 141 A . ? SER 139 A LEU 142 A ? LEU 140 A 1 -3.35 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 6 ? AB ? 7 ? AC ? 2 ? AD ? 2 ? AE ? 7 ? AF ? 5 ? AG ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel AB 5 6 ? anti-parallel AB 6 7 ? anti-parallel AC 1 2 ? anti-parallel AD 1 2 ? parallel AE 1 2 ? anti-parallel AE 2 3 ? anti-parallel AE 3 4 ? anti-parallel AE 4 5 ? anti-parallel AE 5 6 ? anti-parallel AE 6 7 ? anti-parallel AF 1 2 ? anti-parallel AF 2 3 ? anti-parallel AF 3 4 ? anti-parallel AF 4 5 ? parallel AG 1 2 ? anti-parallel AG 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ARG A 12 ? GLU A 15 ? ARG A 10 GLU A 13 AA 2 VAL A 19 ? GLN A 24 ? VAL A 17 GLN A 22 AA 3 LYS A 27 ? THR A 39 ? LYS A 25 THR A 37 AA 4 LYS A 45 ? ASP A 54 ? LYS A 43 ASP A 52 AA 5 MET A 61 ? PRO A 72 ? MET A 59 PRO A 70 AA 6 GLY A 224 ? PHE A 225 ? GLY A 222 PHE A 223 AB 1 ARG A 12 ? GLU A 15 ? ARG A 10 GLU A 13 AB 2 VAL A 19 ? GLN A 24 ? VAL A 17 GLN A 22 AB 3 LYS A 27 ? THR A 39 ? LYS A 25 THR A 37 AB 4 LYS A 45 ? ASP A 54 ? LYS A 43 ASP A 52 AB 5 MET A 61 ? PRO A 72 ? MET A 59 PRO A 70 AB 6 ASN A 228 ? ALA A 235 ? ASN A 226 ALA A 233 AB 7 LYS A 107 ? VAL A 112 ? LYS A 105 VAL A 110 AC 1 GLY A 224 ? PHE A 225 ? GLY A 222 PHE A 223 AC 2 MET A 61 ? PRO A 72 ? MET A 59 PRO A 70 AD 1 LYS A 76 ? ALA A 79 ? LYS A 74 ALA A 77 AD 2 ARG A 84 ? ASN A 99 ? ARG A 82 ASN A 97 AE 1 THR A 116 ? ILE A 117 ? THR A 114 ILE A 115 AE 2 TYR A 159 ? ASP A 166 ? TYR A 157 ASP A 164 AE 3 ILE A 170 ? PHE A 177 ? ILE A 168 PHE A 175 AE 4 ARG A 84 ? ASN A 99 ? ARG A 82 ASN A 97 AE 5 LYS A 241 ? TRP A 259 ? LYS A 239 TRP A 257 AE 6 TRP A 263 ? ASP A 282 ? TRP A 261 ASP A 280 AE 7 THR A 287 ? ILE A 291 ? THR A 285 ILE A 289 AF 1 THR A 116 ? ILE A 117 ? THR A 114 ILE A 115 AF 2 TYR A 159 ? ASP A 166 ? TYR A 157 ASP A 164 AF 3 ILE A 170 ? PHE A 177 ? ILE A 168 PHE A 175 AF 4 ARG A 84 ? ASN A 99 ? ARG A 82 ASN A 97 AF 5 LYS A 76 ? ALA A 79 ? LYS A 74 ALA A 77 AG 1 ILE A 134 ? SER A 137 ? ILE A 132 SER A 135 AG 2 GLU A 121 ? TYR A 128 ? GLU A 119 TYR A 126 AG 3 VAL A 148 ? VAL A 155 ? VAL A 146 VAL A 153 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N GLU A 14 ? N GLU A 12 O ILE A 21 ? O ILE A 19 AA 2 3 N GLN A 24 ? N GLN A 22 O LYS A 27 ? O LYS A 25 AA 3 4 N ALA A 38 ? N ALA A 36 O ILE A 46 ? O ILE A 44 AA 4 5 N VAL A 53 ? N VAL A 51 O THR A 62 ? O THR A 60 AA 5 6 N ILE A 71 ? N ILE A 69 O PHE A 225 ? O PHE A 223 AB 1 2 N GLU A 14 ? N GLU A 12 O ILE A 21 ? O ILE A 19 AB 2 3 N GLN A 24 ? N GLN A 22 O LYS A 27 ? O LYS A 25 AB 3 4 N ALA A 38 ? N ALA A 36 O ILE A 46 ? O ILE A 44 AB 4 5 N VAL A 53 ? N VAL A 51 O THR A 62 ? O THR A 60 AB 5 6 N LEU A 67 ? N LEU A 65 O PHE A 229 ? O PHE A 227 AB 6 7 N THR A 234 ? N THR A 232 O LYS A 107 ? O LYS A 105 AC 1 2 N PHE A 225 ? N PHE A 223 O ILE A 71 ? O ILE A 69 AD 1 2 N PHE A 78 ? N PHE A 76 O VAL A 86 ? O VAL A 84 AE 1 2 N ILE A 117 ? N ILE A 115 O THR A 161 ? O THR A 159 AE 2 3 N THR A 164 ? N THR A 162 O SER A 172 ? O SER A 170 AE 3 4 N PHE A 177 ? N PHE A 175 O ILE A 91 ? O ILE A 89 AE 4 5 N LYS A 98 ? N LYS A 96 O GLU A 245 ? O GLU A 243 AE 5 6 N ALA A 258 ? N ALA A 256 O GLN A 264 ? O GLN A 262 AE 6 7 N ASP A 282 ? N ASP A 280 O THR A 287 ? O THR A 285 AF 1 2 N ILE A 117 ? N ILE A 115 O THR A 161 ? O THR A 159 AF 2 3 N THR A 164 ? N THR A 162 O SER A 172 ? O SER A 170 AF 3 4 N PHE A 177 ? N PHE A 175 O ILE A 91 ? O ILE A 89 AF 4 5 N ARG A 88 ? N ARG A 86 O LYS A 76 ? O LYS A 74 AG 1 2 N SER A 137 ? N SER A 135 O THR A 125 ? O THR A 123 AG 2 3 N TYR A 128 ? N TYR A 126 O VAL A 148 ? O VAL A 146 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 1291 ? 4 'BINDING SITE FOR RESIDUE ZN A 1291' AC2 Software A ZN 1292 ? 6 'BINDING SITE FOR RESIDUE ZN A 1292' AC3 Software A IMD 1293 ? 9 'BINDING SITE FOR RESIDUE IMD A 1293' AC4 Software A GOL 1294 ? 5 'BINDING SITE FOR RESIDUE GOL A 1294' AC5 Software A GOL 1295 ? 6 'BINDING SITE FOR RESIDUE GOL A 1295' AC6 Software A GOL 1296 ? 10 'BINDING SITE FOR RESIDUE GOL A 1296' AC7 Software A ZN 1297 ? 5 'BINDING SITE FOR RESIDUE ZN A 1297' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASP A 54 ? ASP A 52 . ? 1_555 ? 2 AC1 4 TRP A 283 ? TRP A 281 . ? 1_555 ? 3 AC1 4 HIS A 286 ? HIS A 284 . ? 1_555 ? 4 AC1 4 HOH I . ? HOH A 2220 . ? 1_555 ? 5 AC2 6 ASP A 166 ? ASP A 164 . ? 1_555 ? 6 AC2 6 GLU A 179 ? GLU A 177 . ? 3_556 ? 7 AC2 6 HOH I . ? HOH A 2080 . ? 1_555 ? 8 AC2 6 HOH I . ? HOH A 2082 . ? 1_555 ? 9 AC2 6 HOH I . ? HOH A 2134 . ? 1_555 ? 10 AC2 6 HOH I . ? HOH A 2141 . ? 3_556 ? 11 AC3 9 ASP A 36 ? ASP A 34 . ? 1_555 ? 12 AC3 9 ASP A 36 ? ASP A 34 . ? 2_565 ? 13 AC3 9 ARG A 289 ? ARG A 287 . ? 1_555 ? 14 AC3 9 ARG A 289 ? ARG A 287 . ? 2_565 ? 15 AC3 9 GLN A 290 ? GLN A 288 . ? 2_565 ? 16 AC3 9 GLN A 290 ? GLN A 288 . ? 1_555 ? 17 AC3 9 ZN H . ? ZN A 1297 . ? 1_555 ? 18 AC3 9 ZN H . ? ZN A 1297 . ? 2_565 ? 19 AC3 9 HOH I . ? HOH A 2219 . ? 1_555 ? 20 AC4 5 LYS A 56 ? LYS A 54 . ? 1_544 ? 21 AC4 5 GLY A 205 ? GLY A 203 . ? 1_555 ? 22 AC4 5 TRP A 259 ? TRP A 257 . ? 1_555 ? 23 AC4 5 TRP A 263 ? TRP A 261 . ? 1_555 ? 24 AC4 5 HOH I . ? HOH A 2221 . ? 1_555 ? 25 AC5 6 SER A 201 ? SER A 199 . ? 1_555 ? 26 AC5 6 ARG A 202 ? ARG A 200 . ? 1_555 ? 27 AC5 6 TYR A 203 ? TYR A 201 . ? 1_555 ? 28 AC5 6 SER A 204 ? SER A 202 . ? 1_555 ? 29 AC5 6 HOH I . ? HOH A 2159 . ? 1_555 ? 30 AC5 6 HOH I . ? HOH A 2222 . ? 1_555 ? 31 AC6 10 ILE A 108 ? ILE A 106 . ? 3_546 ? 32 AC6 10 ASP A 166 ? ASP A 164 . ? 3_546 ? 33 AC6 10 THR A 167 ? THR A 165 . ? 3_546 ? 34 AC6 10 ASN A 168 ? ASN A 166 . ? 3_546 ? 35 AC6 10 GLU A 179 ? GLU A 177 . ? 1_555 ? 36 AC6 10 ASN A 185 ? ASN A 183 . ? 1_555 ? 37 AC6 10 HOH I . ? HOH A 2126 . ? 1_555 ? 38 AC6 10 HOH I . ? HOH A 2128 . ? 1_555 ? 39 AC6 10 HOH I . ? HOH A 2141 . ? 1_555 ? 40 AC6 10 HOH I . ? HOH A 2223 . ? 1_555 ? 41 AC7 5 ASP A 36 ? ASP A 34 . ? 2_565 ? 42 AC7 5 IMD D . ? IMD A 1293 . ? 2_565 ? 43 AC7 5 IMD D . ? IMD A 1293 . ? 1_555 ? 44 AC7 5 HOH I . ? HOH A 2219 . ? 1_555 ? 45 AC7 5 HOH I . ? HOH A 3001 . ? 1_555 ? # _database_PDB_matrix.entry_id 2YGT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YGT _atom_sites.fract_transf_matrix[1][1] 0.008855 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020135 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017101 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 SER 2 0 ? ? ? A . n A 1 3 ASN 3 1 ? ? ? A . n A 1 4 ASP 4 2 ? ? ? A . n A 1 5 LEU 5 3 ? ? ? A . n A 1 6 GLY 6 4 ? ? ? A . n A 1 7 SER 7 5 ? ? ? A . n A 1 8 LYS 8 6 ? ? ? A . n A 1 9 SER 9 7 ? ? ? A . n A 1 10 GLU 10 8 ? ? ? A . n A 1 11 ILE 11 9 9 ILE ILE A . n A 1 12 ARG 12 10 10 ARG ARG A . n A 1 13 LYS 13 11 11 LYS LYS A . n A 1 14 GLU 14 12 12 GLU GLU A . n A 1 15 GLU 15 13 13 GLU GLU A . n A 1 16 ASN 16 14 14 ASN ASN A . n A 1 17 GLY 17 15 15 GLY GLY A . n A 1 18 ASN 18 16 16 ASN ASN A . n A 1 19 VAL 19 17 17 VAL VAL A . n A 1 20 THR 20 18 18 THR THR A . n A 1 21 ILE 21 19 19 ILE ILE A . n A 1 22 ILE 22 20 20 ILE ILE A . n A 1 23 THR 23 21 21 THR THR A . n A 1 24 GLN 24 22 22 GLN GLN A . n A 1 25 ASN 25 23 23 ASN ASN A . n A 1 26 ASN 26 24 24 ASN ASN A . n A 1 27 LYS 27 25 25 LYS LYS A . n A 1 28 GLN 28 26 26 GLN GLN A . n A 1 29 ILE 29 27 27 ILE ILE A . n A 1 30 ARG 30 28 28 ARG ARG A . n A 1 31 LYS 31 29 29 LYS LYS A . n A 1 32 TYR 32 30 30 TYR TYR A . n A 1 33 SER 33 31 31 SER SER A . n A 1 34 SER 34 32 32 SER SER A . n A 1 35 THR 35 33 33 THR THR A . n A 1 36 ASP 36 34 34 ASP ASP A . n A 1 37 SER 37 35 35 SER SER A . n A 1 38 ALA 38 36 36 ALA ALA A . n A 1 39 THR 39 37 37 THR THR A . n A 1 40 THR 40 38 38 THR THR A . n A 1 41 LYS 41 39 39 LYS LYS A . n A 1 42 SER 42 40 40 SER SER A . n A 1 43 ASN 43 41 41 ASN ASN A . n A 1 44 SER 44 42 42 SER SER A . n A 1 45 LYS 45 43 43 LYS LYS A . n A 1 46 ILE 46 44 44 ILE ILE A . n A 1 47 THR 47 45 45 THR THR A . n A 1 48 VAL 48 46 46 VAL VAL A . n A 1 49 ASP 49 47 47 ASP ASP A . n A 1 50 ALA 50 48 48 ALA ALA A . n A 1 51 SER 51 49 49 SER SER A . n A 1 52 PHE 52 50 50 PHE PHE A . n A 1 53 VAL 53 51 51 VAL VAL A . n A 1 54 ASP 54 52 52 ASP ASP A . n A 1 55 ASP 55 53 53 ASP ASP A . n A 1 56 LYS 56 54 54 LYS LYS A . n A 1 57 PHE 57 55 55 PHE PHE A . n A 1 58 SER 58 56 56 SER SER A . n A 1 59 SER 59 57 57 SER SER A . n A 1 60 GLU 60 58 58 GLU GLU A . n A 1 61 MET 61 59 59 MET MET A . n A 1 62 THR 62 60 60 THR THR A . n A 1 63 THR 63 61 61 THR THR A . n A 1 64 ILE 64 62 62 ILE ILE A . n A 1 65 ILE 65 63 63 ILE ILE A . n A 1 66 SER 66 64 64 SER SER A . n A 1 67 LEU 67 65 65 LEU LEU A . n A 1 68 LYS 68 66 66 LYS LYS A . n A 1 69 GLY 69 67 67 GLY GLY A . n A 1 70 PHE 70 68 68 PHE PHE A . n A 1 71 ILE 71 69 69 ILE ILE A . n A 1 72 PRO 72 70 70 PRO PRO A . n A 1 73 SER 73 71 71 SER SER A . n A 1 74 GLY 74 72 72 GLY GLY A . n A 1 75 ARG 75 73 73 ARG ARG A . n A 1 76 LYS 76 74 74 LYS LYS A . n A 1 77 ILE 77 75 75 ILE ILE A . n A 1 78 PHE 78 76 76 PHE PHE A . n A 1 79 ALA 79 77 77 ALA ALA A . n A 1 80 LEU 80 78 78 LEU LEU A . n A 1 81 SER 81 79 79 SER SER A . n A 1 82 LYS 82 80 80 LYS LYS A . n A 1 83 TYR 83 81 81 TYR TYR A . n A 1 84 ARG 84 82 82 ARG ARG A . n A 1 85 GLY 85 83 83 GLY GLY A . n A 1 86 VAL 86 84 84 VAL VAL A . n A 1 87 MET 87 85 85 MET MET A . n A 1 88 ARG 88 86 86 ARG ARG A . n A 1 89 TRP 89 87 87 TRP TRP A . n A 1 90 PRO 90 88 88 PRO PRO A . n A 1 91 ILE 91 89 89 ILE ILE A . n A 1 92 LYS 92 90 90 LYS LYS A . n A 1 93 TYR 93 91 91 TYR TYR A . n A 1 94 MET 94 92 92 MET MET A . n A 1 95 VAL 95 93 93 VAL VAL A . n A 1 96 ASP 96 94 94 ASP ASP A . n A 1 97 LEU 97 95 95 LEU LEU A . n A 1 98 LYS 98 96 96 LYS LYS A . n A 1 99 ASN 99 97 97 ASN ASN A . n A 1 100 ASN 100 98 98 ASN ASN A . n A 1 101 SER 101 99 99 SER SER A . n A 1 102 LEU 102 100 100 LEU LEU A . n A 1 103 ASP 103 101 101 ASP ASP A . n A 1 104 SER 104 102 102 SER SER A . n A 1 105 SER 105 103 103 SER SER A . n A 1 106 VAL 106 104 104 VAL VAL A . n A 1 107 LYS 107 105 105 LYS LYS A . n A 1 108 ILE 108 106 106 ILE ILE A . n A 1 109 VAL 109 107 107 VAL VAL A . n A 1 110 ASP 110 108 108 ASP ASP A . n A 1 111 SER 111 109 109 SER SER A . n A 1 112 VAL 112 110 110 VAL VAL A . n A 1 113 PRO 113 111 111 PRO PRO A . n A 1 114 LYS 114 112 112 LYS LYS A . n A 1 115 ASN 115 113 113 ASN ASN A . n A 1 116 THR 116 114 114 THR THR A . n A 1 117 ILE 117 115 115 ILE ILE A . n A 1 118 SER 118 116 116 SER SER A . n A 1 119 THR 119 117 117 THR THR A . n A 1 120 LYS 120 118 118 LYS LYS A . n A 1 121 GLU 121 119 119 GLU GLU A . n A 1 122 VAL 122 120 120 VAL VAL A . n A 1 123 ASN 123 121 121 ASN ASN A . n A 1 124 ASN 124 122 122 ASN ASN A . n A 1 125 THR 125 123 123 THR THR A . n A 1 126 ILE 126 124 124 ILE ILE A . n A 1 127 SER 127 125 125 SER SER A . n A 1 128 TYR 128 126 126 TYR TYR A . n A 1 129 SER 129 127 127 SER SER A . n A 1 130 ILE 130 128 128 ILE ILE A . n A 1 131 GLY 131 129 129 GLY GLY A . n A 1 132 GLY 132 130 130 GLY GLY A . n A 1 133 GLY 133 131 131 GLY GLY A . n A 1 134 ILE 134 132 132 ILE ILE A . n A 1 135 ASP 135 133 133 ASP ASP A . n A 1 136 THR 136 134 134 THR THR A . n A 1 137 SER 137 135 135 SER SER A . n A 1 138 ASN 138 136 136 ASN ASN A . n A 1 139 LYS 139 137 137 LYS LYS A . n A 1 140 ALA 140 138 138 ALA ALA A . n A 1 141 SER 141 139 139 SER SER A . n A 1 142 LEU 142 140 140 LEU LEU A . n A 1 143 ASN 143 141 141 ASN ASN A . n A 1 144 ALA 144 142 142 ALA ALA A . n A 1 145 ASN 145 143 143 ASN ASN A . n A 1 146 TYR 146 144 144 TYR TYR A . n A 1 147 ALA 147 145 145 ALA ALA A . n A 1 148 VAL 148 146 146 VAL VAL A . n A 1 149 SER 149 147 147 SER SER A . n A 1 150 LYS 150 148 148 LYS LYS A . n A 1 151 SER 151 149 149 SER SER A . n A 1 152 ILE 152 150 150 ILE ILE A . n A 1 153 SER 153 151 151 SER SER A . n A 1 154 TYR 154 152 152 TYR TYR A . n A 1 155 VAL 155 153 153 VAL VAL A . n A 1 156 GLN 156 154 154 GLN GLN A . n A 1 157 PRO 157 155 155 PRO PRO A . n A 1 158 ASP 158 156 156 ASP ASP A . n A 1 159 TYR 159 157 157 TYR TYR A . n A 1 160 ASN 160 158 158 ASN ASN A . n A 1 161 THR 161 159 159 THR THR A . n A 1 162 ILE 162 160 160 ILE ILE A . n A 1 163 GLN 163 161 161 GLN GLN A . n A 1 164 THR 164 162 162 THR THR A . n A 1 165 ASN 165 163 163 ASN ASN A . n A 1 166 ASP 166 164 164 ASP ASP A . n A 1 167 THR 167 165 165 THR THR A . n A 1 168 ASN 168 166 166 ASN ASN A . n A 1 169 SER 169 167 167 SER SER A . n A 1 170 ILE 170 168 168 ILE ILE A . n A 1 171 ALA 171 169 169 ALA ALA A . n A 1 172 SER 172 170 170 SER SER A . n A 1 173 TRP 173 171 171 TRP TRP A . n A 1 174 ASN 174 172 172 ASN ASN A . n A 1 175 THR 175 173 173 THR THR A . n A 1 176 GLU 176 174 174 GLU GLU A . n A 1 177 PHE 177 175 175 PHE PHE A . n A 1 178 ALA 178 176 176 ALA ALA A . n A 1 179 GLU 179 177 177 GLU GLU A . n A 1 180 THR 180 178 178 THR THR A . n A 1 181 ARG 181 179 179 ARG ARG A . n A 1 182 ASP 182 180 180 ASP ASP A . n A 1 183 GLY 183 181 181 GLY GLY A . n A 1 184 TYR 184 182 182 TYR TYR A . n A 1 185 ASN 185 183 183 ASN ASN A . n A 1 186 VAL 186 184 184 VAL VAL A . n A 1 187 ASN 187 185 185 ASN ASN A . n A 1 188 SER 188 186 186 SER SER A . n A 1 189 TRP 189 187 187 TRP TRP A . n A 1 190 ASN 190 188 188 ASN ASN A . n A 1 191 ILE 191 189 189 ILE ILE A . n A 1 192 VAL 192 190 190 VAL VAL A . n A 1 193 TYR 193 191 191 TYR TYR A . n A 1 194 GLY 194 192 192 GLY GLY A . n A 1 195 ASN 195 193 193 ASN ASN A . n A 1 196 GLN 196 194 194 GLN GLN A . n A 1 197 MET 197 195 195 MET MET A . n A 1 198 PHE 198 196 196 PHE PHE A . n A 1 199 MET 199 197 197 MET MET A . n A 1 200 ARG 200 198 198 ARG ARG A . n A 1 201 SER 201 199 199 SER SER A . n A 1 202 ARG 202 200 200 ARG ARG A . n A 1 203 TYR 203 201 201 TYR TYR A . n A 1 204 SER 204 202 202 SER SER A . n A 1 205 GLY 205 203 203 GLY GLY A . n A 1 206 THR 206 204 204 THR THR A . n A 1 207 SER 207 205 205 SER SER A . n A 1 208 THR 208 206 206 THR THR A . n A 1 209 THR 209 207 207 THR THR A . n A 1 210 ASN 210 208 208 ASN ASN A . n A 1 211 PHE 211 209 209 PHE PHE A . n A 1 212 THR 212 210 210 THR THR A . n A 1 213 PRO 213 211 211 PRO PRO A . n A 1 214 ASP 214 212 212 ASP ASP A . n A 1 215 TYR 215 213 213 TYR TYR A . n A 1 216 GLN 216 214 214 GLN GLN A . n A 1 217 LEU 217 215 215 LEU LEU A . n A 1 218 SER 218 216 216 SER SER A . n A 1 219 SER 219 217 217 SER SER A . n A 1 220 LEU 220 218 218 LEU LEU A . n A 1 221 ILE 221 219 219 ILE ILE A . n A 1 222 THR 222 220 220 THR THR A . n A 1 223 GLY 223 221 221 GLY GLY A . n A 1 224 GLY 224 222 222 GLY GLY A . n A 1 225 PHE 225 223 223 PHE PHE A . n A 1 226 SER 226 224 224 SER SER A . n A 1 227 PRO 227 225 225 PRO PRO A . n A 1 228 ASN 228 226 226 ASN ASN A . n A 1 229 PHE 229 227 227 PHE PHE A . n A 1 230 GLY 230 228 228 GLY GLY A . n A 1 231 VAL 231 229 229 VAL VAL A . n A 1 232 VAL 232 230 230 VAL VAL A . n A 1 233 LEU 233 231 231 LEU LEU A . n A 1 234 THR 234 232 232 THR THR A . n A 1 235 ALA 235 233 233 ALA ALA A . n A 1 236 PRO 236 234 234 PRO PRO A . n A 1 237 ASN 237 235 235 ASN ASN A . n A 1 238 GLY 238 236 236 GLY GLY A . n A 1 239 THR 239 237 237 THR THR A . n A 1 240 LYS 240 238 238 LYS LYS A . n A 1 241 LYS 241 239 239 LYS LYS A . n A 1 242 SER 242 240 240 SER SER A . n A 1 243 GLN 243 241 241 GLN GLN A . n A 1 244 ILE 244 242 242 ILE ILE A . n A 1 245 GLU 245 243 243 GLU GLU A . n A 1 246 ILE 246 244 244 ILE ILE A . n A 1 247 SER 247 245 245 SER SER A . n A 1 248 LEU 248 246 246 LEU LEU A . n A 1 249 LYS 249 247 247 LYS LYS A . n A 1 250 ARG 250 248 248 ARG ARG A . n A 1 251 GLU 251 249 249 GLU GLU A . n A 1 252 ILE 252 250 250 ILE ILE A . n A 1 253 ASN 253 251 251 ASN ASN A . n A 1 254 SER 254 252 252 SER SER A . n A 1 255 TYR 255 253 253 TYR TYR A . n A 1 256 HIS 256 254 254 HIS HIS A . n A 1 257 ILE 257 255 255 ILE ILE A . n A 1 258 ALA 258 256 256 ALA ALA A . n A 1 259 TRP 259 257 257 TRP TRP A . n A 1 260 ASP 260 258 258 ASP ASP A . n A 1 261 THR 261 259 259 THR THR A . n A 1 262 GLU 262 260 260 GLU GLU A . n A 1 263 TRP 263 261 261 TRP TRP A . n A 1 264 GLN 264 262 262 GLN GLN A . n A 1 265 GLY 265 263 263 GLY GLY A . n A 1 266 ARG 266 264 264 ARG ARG A . n A 1 267 ASN 267 265 265 ASN ASN A . n A 1 268 TYR 268 266 266 TYR TYR A . n A 1 269 PRO 269 267 267 PRO PRO A . n A 1 270 ASP 270 268 268 ASP ASP A . n A 1 271 SER 271 269 269 SER SER A . n A 1 272 LYS 272 270 270 LYS LYS A . n A 1 273 ILE 273 271 271 ILE ILE A . n A 1 274 GLU 274 272 272 GLU GLU A . n A 1 275 GLU 275 273 273 GLU GLU A . n A 1 276 THR 276 274 274 THR THR A . n A 1 277 VAL 277 275 275 VAL VAL A . n A 1 278 LYS 278 276 276 LYS LYS A . n A 1 279 PHE 279 277 277 PHE PHE A . n A 1 280 GLU 280 278 278 GLU GLU A . n A 1 281 LEU 281 279 279 LEU LEU A . n A 1 282 ASP 282 280 280 ASP ASP A . n A 1 283 TRP 283 281 281 TRP TRP A . n A 1 284 GLU 284 282 282 GLU GLU A . n A 1 285 LYS 285 283 283 LYS LYS A . n A 1 286 HIS 286 284 284 HIS HIS A . n A 1 287 THR 287 285 285 THR THR A . n A 1 288 ILE 288 286 286 ILE ILE A . n A 1 289 ARG 289 287 287 ARG ARG A . n A 1 290 GLN 290 288 288 GLN GLN A . n A 1 291 ILE 291 289 289 ILE ILE A . n A 1 292 SER 292 290 290 SER SER A . n A 1 293 HIS 293 291 291 HIS HIS A . n A 1 294 HIS 294 292 ? ? ? A . n A 1 295 HIS 295 293 ? ? ? A . n A 1 296 HIS 296 294 ? ? ? A . n A 1 297 HIS 297 295 ? ? ? A . n A 1 298 HIS 298 296 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 1291 1291 ZN ZN A . C 2 ZN 1 1292 1292 ZN ZN A . D 3 IMD 1 1293 1293 IMD IMD A . E 4 GOL 1 1294 1294 GOL GOL A . F 4 GOL 1 1295 1295 GOL GOL A . G 4 GOL 1 1296 1296 GOL GOL A . H 2 ZN 1 1297 1297 ZN ZN A . I 5 HOH 1 2001 2001 HOH HOH A . I 5 HOH 2 2002 2002 HOH HOH A . I 5 HOH 3 2003 2003 HOH HOH A . I 5 HOH 4 2004 2004 HOH HOH A . I 5 HOH 5 2005 2005 HOH HOH A . I 5 HOH 6 2006 2006 HOH HOH A . I 5 HOH 7 2007 2007 HOH HOH A . I 5 HOH 8 2008 2008 HOH HOH A . I 5 HOH 9 2009 2009 HOH HOH A . I 5 HOH 10 2010 2010 HOH HOH A . I 5 HOH 11 2011 2011 HOH HOH A . I 5 HOH 12 2012 2012 HOH HOH A . I 5 HOH 13 2013 2013 HOH HOH A . I 5 HOH 14 2014 2014 HOH HOH A . I 5 HOH 15 2015 2015 HOH HOH A . I 5 HOH 16 2016 2016 HOH HOH A . I 5 HOH 17 2017 2017 HOH HOH A . I 5 HOH 18 2018 2018 HOH HOH A . I 5 HOH 19 2019 2019 HOH HOH A . I 5 HOH 20 2020 2020 HOH HOH A . I 5 HOH 21 2021 2021 HOH HOH A . I 5 HOH 22 2022 2022 HOH HOH A . I 5 HOH 23 2023 2023 HOH HOH A . I 5 HOH 24 2024 2024 HOH HOH A . I 5 HOH 25 2025 2025 HOH HOH A . I 5 HOH 26 2026 2026 HOH HOH A . I 5 HOH 27 2027 2027 HOH HOH A . I 5 HOH 28 2028 2028 HOH HOH A . I 5 HOH 29 2029 2029 HOH HOH A . I 5 HOH 30 2030 2030 HOH HOH A . I 5 HOH 31 2031 2031 HOH HOH A . I 5 HOH 32 2032 2032 HOH HOH A . I 5 HOH 33 2033 2033 HOH HOH A . I 5 HOH 34 2034 2034 HOH HOH A . I 5 HOH 35 2035 2035 HOH HOH A . I 5 HOH 36 2036 2036 HOH HOH A . I 5 HOH 37 2037 2037 HOH HOH A . I 5 HOH 38 2038 2038 HOH HOH A . I 5 HOH 39 2039 2039 HOH HOH A . I 5 HOH 40 2040 2040 HOH HOH A . I 5 HOH 41 2041 2041 HOH HOH A . I 5 HOH 42 2042 2042 HOH HOH A . I 5 HOH 43 2043 2043 HOH HOH A . I 5 HOH 44 2044 2044 HOH HOH A . I 5 HOH 45 2045 2045 HOH HOH A . I 5 HOH 46 2046 2046 HOH HOH A . I 5 HOH 47 2047 2047 HOH HOH A . I 5 HOH 48 2048 2048 HOH HOH A . I 5 HOH 49 2049 2049 HOH HOH A . I 5 HOH 50 2050 2050 HOH HOH A . I 5 HOH 51 2051 2051 HOH HOH A . I 5 HOH 52 2052 2052 HOH HOH A . I 5 HOH 53 2053 2053 HOH HOH A . I 5 HOH 54 2054 2054 HOH HOH A . I 5 HOH 55 2055 2055 HOH HOH A . I 5 HOH 56 2056 2056 HOH HOH A . I 5 HOH 57 2057 2057 HOH HOH A . I 5 HOH 58 2058 2058 HOH HOH A . I 5 HOH 59 2059 2059 HOH HOH A . I 5 HOH 60 2060 2060 HOH HOH A . I 5 HOH 61 2061 2061 HOH HOH A . I 5 HOH 62 2062 2062 HOH HOH A . I 5 HOH 63 2063 2063 HOH HOH A . I 5 HOH 64 2064 2064 HOH HOH A . I 5 HOH 65 2065 2065 HOH HOH A . I 5 HOH 66 2066 2066 HOH HOH A . I 5 HOH 67 2067 2067 HOH HOH A . I 5 HOH 68 2068 2068 HOH HOH A . I 5 HOH 69 2069 2069 HOH HOH A . I 5 HOH 70 2070 2070 HOH HOH A . I 5 HOH 71 2071 2071 HOH HOH A . I 5 HOH 72 2072 2072 HOH HOH A . I 5 HOH 73 2073 2073 HOH HOH A . I 5 HOH 74 2074 2074 HOH HOH A . I 5 HOH 75 2075 2075 HOH HOH A . I 5 HOH 76 2076 2076 HOH HOH A . I 5 HOH 77 2077 2077 HOH HOH A . I 5 HOH 78 2078 2078 HOH HOH A . I 5 HOH 79 2079 2079 HOH HOH A . I 5 HOH 80 2080 2080 HOH HOH A . I 5 HOH 81 2081 2081 HOH HOH A . I 5 HOH 82 2082 2082 HOH HOH A . I 5 HOH 83 2083 2083 HOH HOH A . I 5 HOH 84 2084 2084 HOH HOH A . I 5 HOH 85 2085 2085 HOH HOH A . I 5 HOH 86 2086 2086 HOH HOH A . I 5 HOH 87 2087 2087 HOH HOH A . I 5 HOH 88 2088 2088 HOH HOH A . I 5 HOH 89 2089 2089 HOH HOH A . I 5 HOH 90 2090 2090 HOH HOH A . I 5 HOH 91 2091 2091 HOH HOH A . I 5 HOH 92 2092 2092 HOH HOH A . I 5 HOH 93 2093 2093 HOH HOH A . I 5 HOH 94 2094 2094 HOH HOH A . I 5 HOH 95 2095 2095 HOH HOH A . I 5 HOH 96 2096 2096 HOH HOH A . I 5 HOH 97 2097 2097 HOH HOH A . I 5 HOH 98 2098 2098 HOH HOH A . I 5 HOH 99 2099 2099 HOH HOH A . I 5 HOH 100 2100 2100 HOH HOH A . I 5 HOH 101 2101 2101 HOH HOH A . I 5 HOH 102 2102 2102 HOH HOH A . I 5 HOH 103 2103 2103 HOH HOH A . I 5 HOH 104 2104 2104 HOH HOH A . I 5 HOH 105 2105 2105 HOH HOH A . I 5 HOH 106 2106 2106 HOH HOH A . I 5 HOH 107 2107 2107 HOH HOH A . I 5 HOH 108 2108 2108 HOH HOH A . I 5 HOH 109 2109 2109 HOH HOH A . I 5 HOH 110 2110 2110 HOH HOH A . I 5 HOH 111 2111 2111 HOH HOH A . I 5 HOH 112 2112 2112 HOH HOH A . I 5 HOH 113 2113 2113 HOH HOH A . I 5 HOH 114 2114 2114 HOH HOH A . I 5 HOH 115 2115 2115 HOH HOH A . I 5 HOH 116 2116 2116 HOH HOH A . I 5 HOH 117 2117 2117 HOH HOH A . I 5 HOH 118 2118 2118 HOH HOH A . I 5 HOH 119 2119 2119 HOH HOH A . I 5 HOH 120 2120 2120 HOH HOH A . I 5 HOH 121 2121 2121 HOH HOH A . I 5 HOH 122 2122 2122 HOH HOH A . I 5 HOH 123 2123 2123 HOH HOH A . I 5 HOH 124 2124 2124 HOH HOH A . I 5 HOH 125 2125 2125 HOH HOH A . I 5 HOH 126 2126 2126 HOH HOH A . I 5 HOH 127 2127 2127 HOH HOH A . I 5 HOH 128 2128 2128 HOH HOH A . I 5 HOH 129 2129 2129 HOH HOH A . I 5 HOH 130 2130 2130 HOH HOH A . I 5 HOH 131 2131 2131 HOH HOH A . I 5 HOH 132 2132 2132 HOH HOH A . I 5 HOH 133 2133 2133 HOH HOH A . I 5 HOH 134 2134 2134 HOH HOH A . I 5 HOH 135 2135 2135 HOH HOH A . I 5 HOH 136 2136 2136 HOH HOH A . I 5 HOH 137 2137 2137 HOH HOH A . I 5 HOH 138 2138 2138 HOH HOH A . I 5 HOH 139 2139 2139 HOH HOH A . I 5 HOH 140 2140 2140 HOH HOH A . I 5 HOH 141 2141 2141 HOH HOH A . I 5 HOH 142 2142 2142 HOH HOH A . I 5 HOH 143 2143 2143 HOH HOH A . I 5 HOH 144 2144 2144 HOH HOH A . I 5 HOH 145 2145 2145 HOH HOH A . I 5 HOH 146 2146 2146 HOH HOH A . I 5 HOH 147 2147 2147 HOH HOH A . I 5 HOH 148 2148 2148 HOH HOH A . I 5 HOH 149 2149 2149 HOH HOH A . I 5 HOH 150 2150 2150 HOH HOH A . I 5 HOH 151 2151 2151 HOH HOH A . I 5 HOH 152 2152 2152 HOH HOH A . I 5 HOH 153 2153 2153 HOH HOH A . I 5 HOH 154 2154 2154 HOH HOH A . I 5 HOH 155 2155 2155 HOH HOH A . I 5 HOH 156 2156 2156 HOH HOH A . I 5 HOH 157 2157 2157 HOH HOH A . I 5 HOH 158 2158 2158 HOH HOH A . I 5 HOH 159 2159 2159 HOH HOH A . I 5 HOH 160 2160 2160 HOH HOH A . I 5 HOH 161 2161 2161 HOH HOH A . I 5 HOH 162 2162 2162 HOH HOH A . I 5 HOH 163 2163 2163 HOH HOH A . I 5 HOH 164 2164 2164 HOH HOH A . I 5 HOH 165 2165 2165 HOH HOH A . I 5 HOH 166 2166 2166 HOH HOH A . I 5 HOH 167 2167 2167 HOH HOH A . I 5 HOH 168 2168 2168 HOH HOH A . I 5 HOH 169 2169 2169 HOH HOH A . I 5 HOH 170 2170 2170 HOH HOH A . I 5 HOH 171 2171 2171 HOH HOH A . I 5 HOH 172 2172 2172 HOH HOH A . I 5 HOH 173 2173 2173 HOH HOH A . I 5 HOH 174 2174 2174 HOH HOH A . I 5 HOH 175 2175 2175 HOH HOH A . I 5 HOH 176 2176 2176 HOH HOH A . I 5 HOH 177 2177 2177 HOH HOH A . I 5 HOH 178 2178 2178 HOH HOH A . I 5 HOH 179 2179 2179 HOH HOH A . I 5 HOH 180 2180 2180 HOH HOH A . I 5 HOH 181 2181 2181 HOH HOH A . I 5 HOH 182 2182 2182 HOH HOH A . I 5 HOH 183 2183 2183 HOH HOH A . I 5 HOH 184 2184 2184 HOH HOH A . I 5 HOH 185 2185 2185 HOH HOH A . I 5 HOH 186 2186 2186 HOH HOH A . I 5 HOH 187 2187 2187 HOH HOH A . I 5 HOH 188 2188 2188 HOH HOH A . I 5 HOH 189 2189 2189 HOH HOH A . I 5 HOH 190 2190 2190 HOH HOH A . I 5 HOH 191 2191 2191 HOH HOH A . I 5 HOH 192 2192 2192 HOH HOH A . I 5 HOH 193 2193 2193 HOH HOH A . I 5 HOH 194 2194 2194 HOH HOH A . I 5 HOH 195 2195 2195 HOH HOH A . I 5 HOH 196 2196 2196 HOH HOH A . I 5 HOH 197 2197 2197 HOH HOH A . I 5 HOH 198 2198 2198 HOH HOH A . I 5 HOH 199 2199 2199 HOH HOH A . I 5 HOH 200 2200 2200 HOH HOH A . I 5 HOH 201 2201 2201 HOH HOH A . I 5 HOH 202 2202 2202 HOH HOH A . I 5 HOH 203 2203 2203 HOH HOH A . I 5 HOH 204 2204 2204 HOH HOH A . I 5 HOH 205 2205 2205 HOH HOH A . I 5 HOH 206 2206 2206 HOH HOH A . I 5 HOH 207 2207 2207 HOH HOH A . I 5 HOH 208 2208 2208 HOH HOH A . I 5 HOH 209 2209 2209 HOH HOH A . I 5 HOH 210 2210 2210 HOH HOH A . I 5 HOH 211 2211 2211 HOH HOH A . I 5 HOH 212 2212 2212 HOH HOH A . I 5 HOH 213 2213 2213 HOH HOH A . I 5 HOH 214 2214 2214 HOH HOH A . I 5 HOH 215 2215 2215 HOH HOH A . I 5 HOH 216 2216 2216 HOH HOH A . I 5 HOH 217 2217 2217 HOH HOH A . I 5 HOH 218 2218 2218 HOH HOH A . I 5 HOH 219 2219 2219 HOH HOH A . I 5 HOH 220 2220 2220 HOH HOH A . I 5 HOH 221 2221 2221 HOH HOH A . I 5 HOH 222 2222 2222 HOH HOH A . I 5 HOH 223 2223 2223 HOH HOH A . I 5 HOH 224 3001 3001 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A IMD 1293 ? D IMD . 2 1 A HOH 2217 ? I HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 36 ? A ASP 34 ? 2_565 ZN ? H ZN . ? A ZN 1297 ? 1_555 OD1 ? A ASP 36 ? A ASP 34 ? 2_565 55.7 ? 2 OD2 ? A ASP 36 ? A ASP 34 ? 2_565 ZN ? H ZN . ? A ZN 1297 ? 1_555 N1 ? D IMD . ? A IMD 1293 ? 2_565 86.5 ? 3 OD1 ? A ASP 36 ? A ASP 34 ? 2_565 ZN ? H ZN . ? A ZN 1297 ? 1_555 N1 ? D IMD . ? A IMD 1293 ? 2_565 125.5 ? 4 OD2 ? A ASP 36 ? A ASP 34 ? 2_565 ZN ? H ZN . ? A ZN 1297 ? 1_555 N3 ? D IMD . ? A IMD 1293 ? 1_555 87.5 ? 5 OD1 ? A ASP 36 ? A ASP 34 ? 2_565 ZN ? H ZN . ? A ZN 1297 ? 1_555 N3 ? D IMD . ? A IMD 1293 ? 1_555 125.9 ? 6 N1 ? D IMD . ? A IMD 1293 ? 2_565 ZN ? H ZN . ? A ZN 1297 ? 1_555 N3 ? D IMD . ? A IMD 1293 ? 1_555 1.1 ? 7 OD2 ? A ASP 36 ? A ASP 34 ? 2_565 ZN ? H ZN . ? A ZN 1297 ? 1_555 N1 ? D IMD . ? A IMD 1293 ? 1_555 92.1 ? 8 OD1 ? A ASP 36 ? A ASP 34 ? 2_565 ZN ? H ZN . ? A ZN 1297 ? 1_555 N1 ? D IMD . ? A IMD 1293 ? 1_555 127.3 ? 9 N1 ? D IMD . ? A IMD 1293 ? 2_565 ZN ? H ZN . ? A ZN 1297 ? 1_555 N1 ? D IMD . ? A IMD 1293 ? 1_555 6.4 ? 10 N3 ? D IMD . ? A IMD 1293 ? 1_555 ZN ? H ZN . ? A ZN 1297 ? 1_555 N1 ? D IMD . ? A IMD 1293 ? 1_555 5.3 ? 11 OD2 ? A ASP 36 ? A ASP 34 ? 2_565 ZN ? H ZN . ? A ZN 1297 ? 1_555 O ? I HOH . ? A HOH 2219 ? 1_555 149.1 ? 12 OD1 ? A ASP 36 ? A ASP 34 ? 2_565 ZN ? H ZN . ? A ZN 1297 ? 1_555 O ? I HOH . ? A HOH 2219 ? 1_555 98.8 ? 13 N1 ? D IMD . ? A IMD 1293 ? 2_565 ZN ? H ZN . ? A ZN 1297 ? 1_555 O ? I HOH . ? A HOH 2219 ? 1_555 97.9 ? 14 N3 ? D IMD . ? A IMD 1293 ? 1_555 ZN ? H ZN . ? A ZN 1297 ? 1_555 O ? I HOH . ? A HOH 2219 ? 1_555 96.7 ? 15 N1 ? D IMD . ? A IMD 1293 ? 1_555 ZN ? H ZN . ? A ZN 1297 ? 1_555 O ? I HOH . ? A HOH 2219 ? 1_555 91.4 ? 16 OD2 ? A ASP 36 ? A ASP 34 ? 2_565 ZN ? H ZN . ? A ZN 1297 ? 1_555 O ? I HOH . ? A HOH 3001 ? 1_555 91.7 ? 17 OD1 ? A ASP 36 ? A ASP 34 ? 2_565 ZN ? H ZN . ? A ZN 1297 ? 1_555 O ? I HOH . ? A HOH 3001 ? 1_555 103.3 ? 18 N1 ? D IMD . ? A IMD 1293 ? 2_565 ZN ? H ZN . ? A ZN 1297 ? 1_555 O ? I HOH . ? A HOH 3001 ? 1_555 116.8 ? 19 N3 ? D IMD . ? A IMD 1293 ? 1_555 ZN ? H ZN . ? A ZN 1297 ? 1_555 O ? I HOH . ? A HOH 3001 ? 1_555 117.3 ? 20 N1 ? D IMD . ? A IMD 1293 ? 1_555 ZN ? H ZN . ? A ZN 1297 ? 1_555 O ? I HOH . ? A HOH 3001 ? 1_555 119.8 ? 21 O ? I HOH . ? A HOH 2219 ? 1_555 ZN ? H ZN . ? A ZN 1297 ? 1_555 O ? I HOH . ? A HOH 3001 ? 1_555 112.9 ? 22 OD1 ? A ASP 54 ? A ASP 52 ? 1_555 ZN ? B ZN . ? A ZN 1291 ? 1_555 NE2 ? A HIS 286 ? A HIS 284 ? 1_555 105.7 ? 23 OD2 ? A ASP 166 ? A ASP 164 ? 1_555 ZN ? C ZN . ? A ZN 1292 ? 1_555 OE2 ? A GLU 179 ? A GLU 177 ? 3_556 83.8 ? 24 OD2 ? A ASP 166 ? A ASP 164 ? 1_555 ZN ? C ZN . ? A ZN 1292 ? 1_555 O ? I HOH . ? A HOH 2080 ? 1_555 171.5 ? 25 OE2 ? A GLU 179 ? A GLU 177 ? 3_556 ZN ? C ZN . ? A ZN 1292 ? 1_555 O ? I HOH . ? A HOH 2080 ? 1_555 88.2 ? 26 OD2 ? A ASP 166 ? A ASP 164 ? 1_555 ZN ? C ZN . ? A ZN 1292 ? 1_555 O ? I HOH . ? A HOH 2082 ? 1_555 92.1 ? 27 OE2 ? A GLU 179 ? A GLU 177 ? 3_556 ZN ? C ZN . ? A ZN 1292 ? 1_555 O ? I HOH . ? A HOH 2082 ? 1_555 164.0 ? 28 O ? I HOH . ? A HOH 2080 ? 1_555 ZN ? C ZN . ? A ZN 1292 ? 1_555 O ? I HOH . ? A HOH 2082 ? 1_555 96.4 ? 29 OD2 ? A ASP 166 ? A ASP 164 ? 1_555 ZN ? C ZN . ? A ZN 1292 ? 1_555 O ? I HOH . ? A HOH 2134 ? 1_555 88.9 ? 30 OE2 ? A GLU 179 ? A GLU 177 ? 3_556 ZN ? C ZN . ? A ZN 1292 ? 1_555 O ? I HOH . ? A HOH 2134 ? 1_555 78.3 ? 31 O ? I HOH . ? A HOH 2080 ? 1_555 ZN ? C ZN . ? A ZN 1292 ? 1_555 O ? I HOH . ? A HOH 2134 ? 1_555 92.0 ? 32 O ? I HOH . ? A HOH 2082 ? 1_555 ZN ? C ZN . ? A ZN 1292 ? 1_555 O ? I HOH . ? A HOH 2134 ? 1_555 86.2 ? 33 OD2 ? A ASP 166 ? A ASP 164 ? 1_555 ZN ? C ZN . ? A ZN 1292 ? 1_555 O ? I HOH . ? A HOH 2141 ? 3_556 83.9 ? 34 OE2 ? A GLU 179 ? A GLU 177 ? 3_556 ZN ? C ZN . ? A ZN 1292 ? 1_555 O ? I HOH . ? A HOH 2141 ? 3_556 95.4 ? 35 O ? I HOH . ? A HOH 2080 ? 1_555 ZN ? C ZN . ? A ZN 1292 ? 1_555 O ? I HOH . ? A HOH 2141 ? 3_556 94.2 ? 36 O ? I HOH . ? A HOH 2082 ? 1_555 ZN ? C ZN . ? A ZN 1292 ? 1_555 O ? I HOH . ? A HOH 2141 ? 3_556 99.5 ? 37 O ? I HOH . ? A HOH 2134 ? 1_555 ZN ? C ZN . ? A ZN 1292 ? 1_555 O ? I HOH . ? A HOH 2141 ? 3_556 171.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-05-16 2 'Structure model' 1 1 2013-07-10 3 'Structure model' 1 2 2016-04-27 4 'Structure model' 1 3 2019-03-06 5 'Structure model' 1 4 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Experimental preparation' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' Other 10 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 4 'Structure model' pdbx_database_proc 3 4 'Structure model' pdbx_database_status 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 7 5 'Structure model' pdbx_database_status 8 5 'Structure model' pdbx_initial_refinement_model 9 5 'Structure model' pdbx_struct_conn_angle 10 5 'Structure model' struct_conn 11 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.temp' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_pdbx_database_status.status_code_sf' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 22 5 'Structure model' '_pdbx_struct_conn_angle.value' 23 5 'Structure model' '_struct_conn.pdbx_dist_value' 24 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 5 'Structure model' '_struct_conn.ptnr1_symmetry' 31 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 37 5 'Structure model' '_struct_conn.ptnr2_symmetry' 38 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 5.7810 17.4970 54.2287 0.3542 0.3127 0.1452 -0.0179 0.0576 0.1210 -0.1330 0.0335 0.0886 -0.0543 -0.0532 0.0041 0.0446 -0.2002 -0.0847 -0.0640 0.4968 0.3317 0.0437 -0.5425 -0.0005 'X-RAY DIFFRACTION' 2 ? refined 15.0337 21.1528 61.5772 0.4320 0.7048 0.2960 -0.0104 0.0632 -0.0760 0.0070 0.0247 0.0496 0.0173 0.0011 -0.0006 -0.1159 -0.4933 -0.2536 0.3338 -0.1254 -0.1046 0.0071 -0.0812 -0.0024 'X-RAY DIFFRACTION' 3 ? refined 14.5707 13.5701 31.4892 0.1126 0.0945 0.0972 0.0079 -0.0351 -0.0270 0.4730 0.4076 1.1665 -0.3163 -0.1928 0.2044 0.0236 0.0287 -0.0016 0.0169 -0.0224 0.0273 -0.0234 0.0392 -0.0001 'X-RAY DIFFRACTION' 4 ? refined 20.1106 5.1563 46.1435 0.6585 0.1219 0.5907 0.0503 -0.0058 -0.0556 -0.0604 -0.1346 0.1067 0.0158 0.0409 -0.1213 0.1042 0.0412 -0.1113 0.7806 -0.2082 0.1993 0.1617 0.0105 -0.0068 'X-RAY DIFFRACTION' 5 ? refined 17.9599 2.7388 22.1850 0.0945 0.0950 0.0934 0.0100 -0.0382 -0.0172 0.6933 0.7353 1.1482 -0.1535 -0.4811 0.8298 -0.0350 0.1015 -0.0404 -0.0916 -0.1175 0.1839 -0.0122 -0.0184 -0.0047 'X-RAY DIFFRACTION' 6 ? refined 12.4761 13.6911 20.8594 0.2201 0.0777 0.0683 0.0374 -0.0339 0.0470 0.6804 0.3788 0.5128 -0.0032 -0.0537 0.1170 0.1361 0.0500 0.1317 -0.4903 -0.0142 -0.1249 -0.4992 0.0054 0.1610 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'CHAIN A AND RESID 9:21' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'CHAIN A AND RESID 22:26' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? 'CHAIN A AND RESID 27:134' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? 'CHAIN A AND RESID 135:142' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? 'CHAIN A AND RESID 143:257' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? 'CHAIN A AND RESID 258:290' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 14 ? ? -159.84 58.97 2 1 ASN A 24 ? ? 75.08 -18.67 3 1 ASN A 113 ? ? 45.07 -117.90 4 1 SER A 139 ? ? 64.50 -158.76 5 1 LEU A 140 ? ? -110.14 76.83 6 1 GLN A 154 ? ? -150.61 54.61 7 1 ALA A 176 ? ? -105.95 -69.87 8 1 SER A 224 ? ? -113.35 72.95 9 1 ASP A 258 ? ? -101.51 -85.04 10 1 ASP A 268 ? ? -147.50 -76.77 11 1 SER A 290 ? ? 74.44 -63.96 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2026 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.13 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ILE 9 ? CG1 ? A ILE 11 CG1 2 1 Y 1 A ILE 9 ? CG2 ? A ILE 11 CG2 3 1 Y 1 A ILE 9 ? CD1 ? A ILE 11 CD1 4 1 Y 1 A ARG 10 ? CG ? A ARG 12 CG 5 1 Y 1 A ARG 10 ? CD ? A ARG 12 CD 6 1 Y 1 A ARG 10 ? NE ? A ARG 12 NE 7 1 Y 1 A ARG 10 ? CZ ? A ARG 12 CZ 8 1 Y 1 A ARG 10 ? NH1 ? A ARG 12 NH1 9 1 Y 1 A ARG 10 ? NH2 ? A ARG 12 NH2 10 1 Y 1 A LYS 11 ? CE ? A LYS 13 CE 11 1 Y 1 A LYS 11 ? NZ ? A LYS 13 NZ 12 1 Y 1 A GLU 12 ? CD ? A GLU 14 CD 13 1 Y 1 A GLU 12 ? OE1 ? A GLU 14 OE1 14 1 Y 1 A GLU 12 ? OE2 ? A GLU 14 OE2 15 1 Y 1 A ASN 14 ? CG ? A ASN 16 CG 16 1 Y 1 A ASN 14 ? OD1 ? A ASN 16 OD1 17 1 Y 1 A ASN 14 ? ND2 ? A ASN 16 ND2 18 1 Y 1 A GLN 22 ? CD ? A GLN 24 CD 19 1 Y 1 A GLN 22 ? OE1 ? A GLN 24 OE1 20 1 Y 1 A GLN 22 ? NE2 ? A GLN 24 NE2 21 1 Y 1 A ASN 24 ? CG ? A ASN 26 CG 22 1 Y 1 A ASN 24 ? OD1 ? A ASN 26 OD1 23 1 Y 1 A ASN 24 ? ND2 ? A ASN 26 ND2 24 1 Y 1 A LYS 39 ? CG ? A LYS 41 CG 25 1 Y 1 A LYS 39 ? CD ? A LYS 41 CD 26 1 Y 1 A LYS 39 ? CE ? A LYS 41 CE 27 1 Y 1 A LYS 39 ? NZ ? A LYS 41 NZ 28 1 Y 1 A ASN 41 ? ND2 ? A ASN 43 ND2 29 1 Y 1 A LYS 43 ? CE ? A LYS 45 CE 30 1 Y 1 A LYS 43 ? NZ ? A LYS 45 NZ 31 1 Y 1 A LYS 66 ? CD ? A LYS 68 CD 32 1 Y 1 A LYS 66 ? CE ? A LYS 68 CE 33 1 Y 1 A LYS 66 ? NZ ? A LYS 68 NZ 34 1 Y 1 A LYS 74 ? CD ? A LYS 76 CD 35 1 Y 1 A LYS 74 ? CE ? A LYS 76 CE 36 1 Y 1 A LYS 74 ? NZ ? A LYS 76 NZ 37 1 Y 1 A LYS 80 ? CG ? A LYS 82 CG 38 1 Y 1 A LYS 80 ? CD ? A LYS 82 CD 39 1 Y 1 A LYS 80 ? CE ? A LYS 82 CE 40 1 Y 1 A LYS 80 ? NZ ? A LYS 82 NZ 41 1 Y 1 A LYS 96 ? CD ? A LYS 98 CD 42 1 Y 1 A LYS 96 ? CE ? A LYS 98 CE 43 1 Y 1 A LYS 96 ? NZ ? A LYS 98 NZ 44 1 Y 1 A LYS 118 ? CD ? A LYS 120 CD 45 1 Y 1 A LYS 118 ? CE ? A LYS 120 CE 46 1 Y 1 A LYS 118 ? NZ ? A LYS 120 NZ 47 1 Y 1 A LYS 137 ? CG ? A LYS 139 CG 48 1 Y 1 A LYS 137 ? CD ? A LYS 139 CD 49 1 Y 1 A LYS 137 ? CE ? A LYS 139 CE 50 1 Y 1 A LYS 137 ? NZ ? A LYS 139 NZ 51 1 Y 1 A LEU 140 ? CG ? A LEU 142 CG 52 1 Y 1 A LEU 140 ? CD1 ? A LEU 142 CD1 53 1 Y 1 A LEU 140 ? CD2 ? A LEU 142 CD2 54 1 Y 1 A ASN 143 ? CG ? A ASN 145 CG 55 1 Y 1 A ASN 143 ? OD1 ? A ASN 145 OD1 56 1 Y 1 A ASN 143 ? ND2 ? A ASN 145 ND2 57 1 Y 1 A ARG 179 ? NE ? A ARG 181 NE 58 1 Y 1 A ARG 179 ? CZ ? A ARG 181 CZ 59 1 Y 1 A ARG 179 ? NH1 ? A ARG 181 NH1 60 1 Y 1 A ARG 179 ? NH2 ? A ARG 181 NH2 61 1 Y 1 A LYS 238 ? CD ? A LYS 240 CD 62 1 Y 1 A LYS 238 ? CE ? A LYS 240 CE 63 1 Y 1 A LYS 238 ? NZ ? A LYS 240 NZ 64 1 Y 1 A LYS 270 ? CD ? A LYS 272 CD 65 1 Y 1 A LYS 270 ? CE ? A LYS 272 CE 66 1 Y 1 A LYS 270 ? NZ ? A LYS 272 NZ 67 1 Y 1 A LYS 276 ? CE ? A LYS 278 CE 68 1 Y 1 A LYS 276 ? NZ ? A LYS 278 NZ 69 1 Y 1 A HIS 291 ? CA ? A HIS 293 CA 70 1 Y 1 A HIS 291 ? C ? A HIS 293 C 71 1 Y 1 A HIS 291 ? O ? A HIS 293 O 72 1 Y 1 A HIS 291 ? CB ? A HIS 293 CB 73 1 Y 1 A HIS 291 ? CG ? A HIS 293 CG 74 1 Y 1 A HIS 291 ? ND1 ? A HIS 293 ND1 75 1 Y 1 A HIS 291 ? CD2 ? A HIS 293 CD2 76 1 Y 1 A HIS 291 ? CE1 ? A HIS 293 CE1 77 1 Y 1 A HIS 291 ? NE2 ? A HIS 293 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A SER 0 ? A SER 2 3 1 Y 1 A ASN 1 ? A ASN 3 4 1 Y 1 A ASP 2 ? A ASP 4 5 1 Y 1 A LEU 3 ? A LEU 5 6 1 Y 1 A GLY 4 ? A GLY 6 7 1 Y 1 A SER 5 ? A SER 7 8 1 Y 1 A LYS 6 ? A LYS 8 9 1 Y 1 A SER 7 ? A SER 9 10 1 Y 1 A GLU 8 ? A GLU 10 11 1 Y 1 A HIS 292 ? A HIS 294 12 1 Y 1 A HIS 293 ? A HIS 295 13 1 Y 1 A HIS 294 ? A HIS 296 14 1 Y 1 A HIS 295 ? A HIS 297 15 1 Y 1 A HIS 296 ? A HIS 298 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 GOL C1 C N N 123 GOL O1 O N N 124 GOL C2 C N N 125 GOL O2 O N N 126 GOL C3 C N N 127 GOL O3 O N N 128 GOL H11 H N N 129 GOL H12 H N N 130 GOL HO1 H N N 131 GOL H2 H N N 132 GOL HO2 H N N 133 GOL H31 H N N 134 GOL H32 H N N 135 GOL HO3 H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 IMD N1 N Y N 183 IMD C2 C Y N 184 IMD N3 N Y N 185 IMD C4 C Y N 186 IMD C5 C Y N 187 IMD HN1 H N N 188 IMD H2 H N N 189 IMD HN3 H N N 190 IMD H4 H N N 191 IMD H5 H N N 192 LEU N N N N 193 LEU CA C N S 194 LEU C C N N 195 LEU O O N N 196 LEU CB C N N 197 LEU CG C N N 198 LEU CD1 C N N 199 LEU CD2 C N N 200 LEU OXT O N N 201 LEU H H N N 202 LEU H2 H N N 203 LEU HA H N N 204 LEU HB2 H N N 205 LEU HB3 H N N 206 LEU HG H N N 207 LEU HD11 H N N 208 LEU HD12 H N N 209 LEU HD13 H N N 210 LEU HD21 H N N 211 LEU HD22 H N N 212 LEU HD23 H N N 213 LEU HXT H N N 214 LYS N N N N 215 LYS CA C N S 216 LYS C C N N 217 LYS O O N N 218 LYS CB C N N 219 LYS CG C N N 220 LYS CD C N N 221 LYS CE C N N 222 LYS NZ N N N 223 LYS OXT O N N 224 LYS H H N N 225 LYS H2 H N N 226 LYS HA H N N 227 LYS HB2 H N N 228 LYS HB3 H N N 229 LYS HG2 H N N 230 LYS HG3 H N N 231 LYS HD2 H N N 232 LYS HD3 H N N 233 LYS HE2 H N N 234 LYS HE3 H N N 235 LYS HZ1 H N N 236 LYS HZ2 H N N 237 LYS HZ3 H N N 238 LYS HXT H N N 239 MET N N N N 240 MET CA C N S 241 MET C C N N 242 MET O O N N 243 MET CB C N N 244 MET CG C N N 245 MET SD S N N 246 MET CE C N N 247 MET OXT O N N 248 MET H H N N 249 MET H2 H N N 250 MET HA H N N 251 MET HB2 H N N 252 MET HB3 H N N 253 MET HG2 H N N 254 MET HG3 H N N 255 MET HE1 H N N 256 MET HE2 H N N 257 MET HE3 H N N 258 MET HXT H N N 259 PHE N N N N 260 PHE CA C N S 261 PHE C C N N 262 PHE O O N N 263 PHE CB C N N 264 PHE CG C Y N 265 PHE CD1 C Y N 266 PHE CD2 C Y N 267 PHE CE1 C Y N 268 PHE CE2 C Y N 269 PHE CZ C Y N 270 PHE OXT O N N 271 PHE H H N N 272 PHE H2 H N N 273 PHE HA H N N 274 PHE HB2 H N N 275 PHE HB3 H N N 276 PHE HD1 H N N 277 PHE HD2 H N N 278 PHE HE1 H N N 279 PHE HE2 H N N 280 PHE HZ H N N 281 PHE HXT H N N 282 PRO N N N N 283 PRO CA C N S 284 PRO C C N N 285 PRO O O N N 286 PRO CB C N N 287 PRO CG C N N 288 PRO CD C N N 289 PRO OXT O N N 290 PRO H H N N 291 PRO HA H N N 292 PRO HB2 H N N 293 PRO HB3 H N N 294 PRO HG2 H N N 295 PRO HG3 H N N 296 PRO HD2 H N N 297 PRO HD3 H N N 298 PRO HXT H N N 299 SER N N N N 300 SER CA C N S 301 SER C C N N 302 SER O O N N 303 SER CB C N N 304 SER OG O N N 305 SER OXT O N N 306 SER H H N N 307 SER H2 H N N 308 SER HA H N N 309 SER HB2 H N N 310 SER HB3 H N N 311 SER HG H N N 312 SER HXT H N N 313 THR N N N N 314 THR CA C N S 315 THR C C N N 316 THR O O N N 317 THR CB C N R 318 THR OG1 O N N 319 THR CG2 C N N 320 THR OXT O N N 321 THR H H N N 322 THR H2 H N N 323 THR HA H N N 324 THR HB H N N 325 THR HG1 H N N 326 THR HG21 H N N 327 THR HG22 H N N 328 THR HG23 H N N 329 THR HXT H N N 330 TRP N N N N 331 TRP CA C N S 332 TRP C C N N 333 TRP O O N N 334 TRP CB C N N 335 TRP CG C Y N 336 TRP CD1 C Y N 337 TRP CD2 C Y N 338 TRP NE1 N Y N 339 TRP CE2 C Y N 340 TRP CE3 C Y N 341 TRP CZ2 C Y N 342 TRP CZ3 C Y N 343 TRP CH2 C Y N 344 TRP OXT O N N 345 TRP H H N N 346 TRP H2 H N N 347 TRP HA H N N 348 TRP HB2 H N N 349 TRP HB3 H N N 350 TRP HD1 H N N 351 TRP HE1 H N N 352 TRP HE3 H N N 353 TRP HZ2 H N N 354 TRP HZ3 H N N 355 TRP HH2 H N N 356 TRP HXT H N N 357 TYR N N N N 358 TYR CA C N S 359 TYR C C N N 360 TYR O O N N 361 TYR CB C N N 362 TYR CG C Y N 363 TYR CD1 C Y N 364 TYR CD2 C Y N 365 TYR CE1 C Y N 366 TYR CE2 C Y N 367 TYR CZ C Y N 368 TYR OH O N N 369 TYR OXT O N N 370 TYR H H N N 371 TYR H2 H N N 372 TYR HA H N N 373 TYR HB2 H N N 374 TYR HB3 H N N 375 TYR HD1 H N N 376 TYR HD2 H N N 377 TYR HE1 H N N 378 TYR HE2 H N N 379 TYR HH H N N 380 TYR HXT H N N 381 VAL N N N N 382 VAL CA C N S 383 VAL C C N N 384 VAL O O N N 385 VAL CB C N N 386 VAL CG1 C N N 387 VAL CG2 C N N 388 VAL OXT O N N 389 VAL H H N N 390 VAL H2 H N N 391 VAL HA H N N 392 VAL HB H N N 393 VAL HG11 H N N 394 VAL HG12 H N N 395 VAL HG13 H N N 396 VAL HG21 H N N 397 VAL HG22 H N N 398 VAL HG23 H N N 399 VAL HXT H N N 400 ZN ZN ZN N N 401 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 GOL C1 O1 sing N N 116 GOL C1 C2 sing N N 117 GOL C1 H11 sing N N 118 GOL C1 H12 sing N N 119 GOL O1 HO1 sing N N 120 GOL C2 O2 sing N N 121 GOL C2 C3 sing N N 122 GOL C2 H2 sing N N 123 GOL O2 HO2 sing N N 124 GOL C3 O3 sing N N 125 GOL C3 H31 sing N N 126 GOL C3 H32 sing N N 127 GOL O3 HO3 sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 IMD N1 C2 sing Y N 173 IMD N1 C5 sing Y N 174 IMD N1 HN1 sing N N 175 IMD C2 N3 doub Y N 176 IMD C2 H2 sing N N 177 IMD N3 C4 sing Y N 178 IMD N3 HN3 sing N N 179 IMD C4 C5 doub Y N 180 IMD C4 H4 sing N N 181 IMD C5 H5 sing N N 182 LEU N CA sing N N 183 LEU N H sing N N 184 LEU N H2 sing N N 185 LEU CA C sing N N 186 LEU CA CB sing N N 187 LEU CA HA sing N N 188 LEU C O doub N N 189 LEU C OXT sing N N 190 LEU CB CG sing N N 191 LEU CB HB2 sing N N 192 LEU CB HB3 sing N N 193 LEU CG CD1 sing N N 194 LEU CG CD2 sing N N 195 LEU CG HG sing N N 196 LEU CD1 HD11 sing N N 197 LEU CD1 HD12 sing N N 198 LEU CD1 HD13 sing N N 199 LEU CD2 HD21 sing N N 200 LEU CD2 HD22 sing N N 201 LEU CD2 HD23 sing N N 202 LEU OXT HXT sing N N 203 LYS N CA sing N N 204 LYS N H sing N N 205 LYS N H2 sing N N 206 LYS CA C sing N N 207 LYS CA CB sing N N 208 LYS CA HA sing N N 209 LYS C O doub N N 210 LYS C OXT sing N N 211 LYS CB CG sing N N 212 LYS CB HB2 sing N N 213 LYS CB HB3 sing N N 214 LYS CG CD sing N N 215 LYS CG HG2 sing N N 216 LYS CG HG3 sing N N 217 LYS CD CE sing N N 218 LYS CD HD2 sing N N 219 LYS CD HD3 sing N N 220 LYS CE NZ sing N N 221 LYS CE HE2 sing N N 222 LYS CE HE3 sing N N 223 LYS NZ HZ1 sing N N 224 LYS NZ HZ2 sing N N 225 LYS NZ HZ3 sing N N 226 LYS OXT HXT sing N N 227 MET N CA sing N N 228 MET N H sing N N 229 MET N H2 sing N N 230 MET CA C sing N N 231 MET CA CB sing N N 232 MET CA HA sing N N 233 MET C O doub N N 234 MET C OXT sing N N 235 MET CB CG sing N N 236 MET CB HB2 sing N N 237 MET CB HB3 sing N N 238 MET CG SD sing N N 239 MET CG HG2 sing N N 240 MET CG HG3 sing N N 241 MET SD CE sing N N 242 MET CE HE1 sing N N 243 MET CE HE2 sing N N 244 MET CE HE3 sing N N 245 MET OXT HXT sing N N 246 PHE N CA sing N N 247 PHE N H sing N N 248 PHE N H2 sing N N 249 PHE CA C sing N N 250 PHE CA CB sing N N 251 PHE CA HA sing N N 252 PHE C O doub N N 253 PHE C OXT sing N N 254 PHE CB CG sing N N 255 PHE CB HB2 sing N N 256 PHE CB HB3 sing N N 257 PHE CG CD1 doub Y N 258 PHE CG CD2 sing Y N 259 PHE CD1 CE1 sing Y N 260 PHE CD1 HD1 sing N N 261 PHE CD2 CE2 doub Y N 262 PHE CD2 HD2 sing N N 263 PHE CE1 CZ doub Y N 264 PHE CE1 HE1 sing N N 265 PHE CE2 CZ sing Y N 266 PHE CE2 HE2 sing N N 267 PHE CZ HZ sing N N 268 PHE OXT HXT sing N N 269 PRO N CA sing N N 270 PRO N CD sing N N 271 PRO N H sing N N 272 PRO CA C sing N N 273 PRO CA CB sing N N 274 PRO CA HA sing N N 275 PRO C O doub N N 276 PRO C OXT sing N N 277 PRO CB CG sing N N 278 PRO CB HB2 sing N N 279 PRO CB HB3 sing N N 280 PRO CG CD sing N N 281 PRO CG HG2 sing N N 282 PRO CG HG3 sing N N 283 PRO CD HD2 sing N N 284 PRO CD HD3 sing N N 285 PRO OXT HXT sing N N 286 SER N CA sing N N 287 SER N H sing N N 288 SER N H2 sing N N 289 SER CA C sing N N 290 SER CA CB sing N N 291 SER CA HA sing N N 292 SER C O doub N N 293 SER C OXT sing N N 294 SER CB OG sing N N 295 SER CB HB2 sing N N 296 SER CB HB3 sing N N 297 SER OG HG sing N N 298 SER OXT HXT sing N N 299 THR N CA sing N N 300 THR N H sing N N 301 THR N H2 sing N N 302 THR CA C sing N N 303 THR CA CB sing N N 304 THR CA HA sing N N 305 THR C O doub N N 306 THR C OXT sing N N 307 THR CB OG1 sing N N 308 THR CB CG2 sing N N 309 THR CB HB sing N N 310 THR OG1 HG1 sing N N 311 THR CG2 HG21 sing N N 312 THR CG2 HG22 sing N N 313 THR CG2 HG23 sing N N 314 THR OXT HXT sing N N 315 TRP N CA sing N N 316 TRP N H sing N N 317 TRP N H2 sing N N 318 TRP CA C sing N N 319 TRP CA CB sing N N 320 TRP CA HA sing N N 321 TRP C O doub N N 322 TRP C OXT sing N N 323 TRP CB CG sing N N 324 TRP CB HB2 sing N N 325 TRP CB HB3 sing N N 326 TRP CG CD1 doub Y N 327 TRP CG CD2 sing Y N 328 TRP CD1 NE1 sing Y N 329 TRP CD1 HD1 sing N N 330 TRP CD2 CE2 doub Y N 331 TRP CD2 CE3 sing Y N 332 TRP NE1 CE2 sing Y N 333 TRP NE1 HE1 sing N N 334 TRP CE2 CZ2 sing Y N 335 TRP CE3 CZ3 doub Y N 336 TRP CE3 HE3 sing N N 337 TRP CZ2 CH2 doub Y N 338 TRP CZ2 HZ2 sing N N 339 TRP CZ3 CH2 sing Y N 340 TRP CZ3 HZ3 sing N N 341 TRP CH2 HH2 sing N N 342 TRP OXT HXT sing N N 343 TYR N CA sing N N 344 TYR N H sing N N 345 TYR N H2 sing N N 346 TYR CA C sing N N 347 TYR CA CB sing N N 348 TYR CA HA sing N N 349 TYR C O doub N N 350 TYR C OXT sing N N 351 TYR CB CG sing N N 352 TYR CB HB2 sing N N 353 TYR CB HB3 sing N N 354 TYR CG CD1 doub Y N 355 TYR CG CD2 sing Y N 356 TYR CD1 CE1 sing Y N 357 TYR CD1 HD1 sing N N 358 TYR CD2 CE2 doub Y N 359 TYR CD2 HD2 sing N N 360 TYR CE1 CZ doub Y N 361 TYR CE1 HE1 sing N N 362 TYR CE2 CZ sing Y N 363 TYR CE2 HE2 sing N N 364 TYR CZ OH sing N N 365 TYR OH HH sing N N 366 TYR OXT HXT sing N N 367 VAL N CA sing N N 368 VAL N H sing N N 369 VAL N H2 sing N N 370 VAL CA C sing N N 371 VAL CA CB sing N N 372 VAL CA HA sing N N 373 VAL C O doub N N 374 VAL C OXT sing N N 375 VAL CB CG1 sing N N 376 VAL CB CG2 sing N N 377 VAL CB HB sing N N 378 VAL CG1 HG11 sing N N 379 VAL CG1 HG12 sing N N 380 VAL CG1 HG13 sing N N 381 VAL CG2 HG21 sing N N 382 VAL CG2 HG22 sing N N 383 VAL CG2 HG23 sing N N 384 VAL OXT HXT sing N N 385 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 IMIDAZOLE IMD 4 GLYCEROL GOL 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1PVL _pdbx_initial_refinement_model.details 'PDB ENTRY 1PVL' #