HEADER LIPID BINDING PROTEIN 27-APR-11 2YH6 TITLE STRUCTURE OF THE N-TERMINAL DOMAIN OF BAMC FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPROTEIN 34; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 101-212; COMPND 5 SYNONYM: BAMC; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: DOMAIN WAS IDENTIFIED BY LIMITED PROTEOLYSIS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 STRAIN: K-12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.ZETH,R.ALBRECHT REVDAT 2 10-AUG-11 2YH6 1 JRNL REMARK VERSN REVDAT 1 25-MAY-11 2YH6 0 JRNL AUTH R.ALBRECHT,K.ZETH JRNL TITL STRUCTURAL BASIS OF OUTER MEMBRANE PROTEIN JRNL TITL 2 BIOGENESIS IN BACTERIA. JRNL REF J.BIOL.CHEM. V. 286 27792 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21586578 JRNL DOI 10.1074/JBC.M111.238931 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.82 REMARK 3 NUMBER OF REFLECTIONS : 56570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.19676 REMARK 3 R VALUE (WORKING SET) : 0.19479 REMARK 3 FREE R VALUE : 0.23430 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 2994 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.550 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.590 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4018 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.232 REMARK 3 BIN FREE R VALUE SET COUNT : 237 REMARK 3 BIN FREE R VALUE : 0.285 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3407 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.031 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37 REMARK 3 B22 (A**2) : -0.29 REMARK 3 B33 (A**2) : 0.58 REMARK 3 B12 (A**2) : -0.14 REMARK 3 B13 (A**2) : 0.10 REMARK 3 B23 (A**2) : 0.10 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.907 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3483 ; 0.028 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4744 ; 2.530 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 437 ; 7.433 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;39.043 ;25.680 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 592 ;16.684 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;23.453 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 542 ; 0.178 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2617 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2165 ; 2.430 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3482 ; 3.570 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1318 ; 5.422 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1256 ; 7.542 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3483 ; 3.037 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 113 2 REMARK 3 1 B 4 B 113 2 REMARK 3 1 C 4 C 113 2 REMARK 3 1 D 4 D 113 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 134 ; 0.14 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 134 ; 0.15 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 C (A): 134 ; 0.15 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 D (A): 134 ; 0.13 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 118 ; 0.30 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 118 ; 0.25 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 118 ; 0.28 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 D (A): 118 ; 0.24 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 134 ; 0.43 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 134 ; 0.44 ; 0.50 REMARK 3 TIGHT THERMAL 1 C (A**2): 134 ; 0.44 ; 0.50 REMARK 3 TIGHT THERMAL 1 D (A**2): 134 ; 0.43 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 118 ; 0.41 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 118 ; 0.37 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 118 ; 0.43 ; 2.00 REMARK 3 MEDIUM THERMAL 1 D (A**2): 118 ; 0.42 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2325 8.3856 8.0486 REMARK 3 T TENSOR REMARK 3 T11: 0.1328 T22: 0.2901 REMARK 3 T33: 0.1245 T12: -0.0641 REMARK 3 T13: 0.0116 T23: -0.0955 REMARK 3 L TENSOR REMARK 3 L11: 7.9865 L22: 12.9444 REMARK 3 L33: 5.6511 L12: -3.2454 REMARK 3 L13: -1.3647 L23: 0.3136 REMARK 3 S TENSOR REMARK 3 S11: 0.2261 S12: -0.6974 S13: 0.6313 REMARK 3 S21: 0.5279 S22: -0.1532 S23: 0.1409 REMARK 3 S31: -0.5093 S32: -0.0994 S33: -0.0729 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2924 6.0804 1.7446 REMARK 3 T TENSOR REMARK 3 T11: 0.0414 T22: 0.2840 REMARK 3 T33: 0.1366 T12: -0.0104 REMARK 3 T13: -0.0156 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 5.0074 L22: 2.3105 REMARK 3 L33: 4.3567 L12: -0.5374 REMARK 3 L13: -2.2777 L23: 0.3628 REMARK 3 S TENSOR REMARK 3 S11: 0.1143 S12: 0.1778 S13: 0.6390 REMARK 3 S21: -0.0739 S22: -0.0436 S23: 0.2117 REMARK 3 S31: -0.1594 S32: -0.5218 S33: -0.0708 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9224 -1.7010 -1.9845 REMARK 3 T TENSOR REMARK 3 T11: 0.0628 T22: 0.1049 REMARK 3 T33: 0.0405 T12: -0.0178 REMARK 3 T13: -0.0054 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.8586 L22: 1.4252 REMARK 3 L33: 1.5672 L12: -0.2821 REMARK 3 L13: -0.6356 L23: 0.1199 REMARK 3 S TENSOR REMARK 3 S11: -0.0170 S12: 0.0117 S13: -0.0205 REMARK 3 S21: -0.0751 S22: -0.0245 S23: -0.0335 REMARK 3 S31: 0.0749 S32: -0.0315 S33: 0.0415 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 77 B 91 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0190 -2.1263 6.3011 REMARK 3 T TENSOR REMARK 3 T11: 0.1058 T22: 0.2438 REMARK 3 T33: 0.1232 T12: -0.0571 REMARK 3 T13: -0.0221 T23: 0.0752 REMARK 3 L TENSOR REMARK 3 L11: 6.3370 L22: 11.1178 REMARK 3 L33: 5.9660 L12: -2.7160 REMARK 3 L13: -1.8081 L23: 0.4329 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: -0.5227 S13: -0.3050 REMARK 3 S21: 0.3493 S22: -0.2405 S23: -0.3295 REMARK 3 S31: 0.6324 S32: 0.0368 S33: 0.1995 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 92 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5326 2.3541 1.2951 REMARK 3 T TENSOR REMARK 3 T11: 0.0190 T22: 0.3556 REMARK 3 T33: 0.0690 T12: -0.0281 REMARK 3 T13: -0.0103 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 6.6260 L22: 3.8213 REMARK 3 L33: 5.0138 L12: -1.1852 REMARK 3 L13: 1.4755 L23: 1.0109 REMARK 3 S TENSOR REMARK 3 S11: 0.1707 S12: 0.3891 S13: -0.0818 REMARK 3 S21: -0.0352 S22: 0.0542 S23: -0.2932 REMARK 3 S31: 0.1872 S32: 0.5209 S33: -0.2249 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 115 B 188 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7682 10.7338 0.6835 REMARK 3 T TENSOR REMARK 3 T11: 0.0768 T22: 0.1398 REMARK 3 T33: 0.0784 T12: -0.0295 REMARK 3 T13: 0.0040 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 2.7452 L22: 2.4206 REMARK 3 L33: 1.3304 L12: -0.5135 REMARK 3 L13: 0.1036 L23: 0.2595 REMARK 3 S TENSOR REMARK 3 S11: 0.0331 S12: 0.0309 S13: 0.1956 REMARK 3 S21: -0.1082 S22: -0.0554 S23: -0.0339 REMARK 3 S31: -0.1093 S32: 0.0639 S33: 0.0223 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 77 C 91 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5468 -20.3555 23.0152 REMARK 3 T TENSOR REMARK 3 T11: 0.3192 T22: 0.0806 REMARK 3 T33: 0.1487 T12: 0.0410 REMARK 3 T13: 0.0669 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 22.9555 L22: 7.0673 REMARK 3 L33: 4.5613 L12: 6.1517 REMARK 3 L13: 3.8051 L23: 1.8879 REMARK 3 S TENSOR REMARK 3 S11: 0.1274 S12: 0.6892 S13: -0.6600 REMARK 3 S21: -0.3671 S22: 0.1193 S23: -0.6825 REMARK 3 S31: -0.3106 S32: 0.4639 S33: -0.2467 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 92 C 114 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9895 -33.8217 27.6709 REMARK 3 T TENSOR REMARK 3 T11: 0.3382 T22: 0.0791 REMARK 3 T33: 0.0335 T12: 0.1318 REMARK 3 T13: -0.0043 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 5.0324 L22: 4.9619 REMARK 3 L33: 5.3600 L12: -2.1410 REMARK 3 L13: 0.2662 L23: 1.6272 REMARK 3 S TENSOR REMARK 3 S11: -0.0468 S12: -0.2414 S13: -0.1869 REMARK 3 S21: 0.2710 S22: 0.3121 S23: 0.0337 REMARK 3 S31: 0.3734 S32: 0.3740 S33: -0.2653 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 115 C 187 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0227 -28.7132 28.2826 REMARK 3 T TENSOR REMARK 3 T11: 0.1450 T22: 0.0679 REMARK 3 T33: 0.0845 T12: 0.0127 REMARK 3 T13: 0.0028 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 2.4458 L22: 1.9369 REMARK 3 L33: 1.2436 L12: -0.6259 REMARK 3 L13: 0.2506 L23: 0.4425 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: -0.1223 S13: -0.1471 REMARK 3 S21: 0.0077 S22: -0.0412 S23: 0.1840 REMARK 3 S31: 0.0768 S32: -0.0860 S33: 0.0399 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 77 D 91 REMARK 3 ORIGIN FOR THE GROUP (A): -4.3051 -16.9329 20.7512 REMARK 3 T TENSOR REMARK 3 T11: 0.3894 T22: 0.1050 REMARK 3 T33: 0.1364 T12: 0.0675 REMARK 3 T13: -0.1039 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 12.0699 L22: 6.0254 REMARK 3 L33: 4.2114 L12: 0.6437 REMARK 3 L13: 2.2020 L23: 0.1241 REMARK 3 S TENSOR REMARK 3 S11: -0.2047 S12: 0.4580 S13: -0.2402 REMARK 3 S21: -0.9804 S22: 0.0526 S23: 0.6314 REMARK 3 S31: 0.0769 S32: -0.3481 S33: 0.1521 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 92 D 114 REMARK 3 ORIGIN FOR THE GROUP (A): -7.6479 -4.6816 27.3225 REMARK 3 T TENSOR REMARK 3 T11: 0.2505 T22: 0.0808 REMARK 3 T33: 0.1128 T12: 0.1162 REMARK 3 T13: -0.0273 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 2.4848 L22: 4.6324 REMARK 3 L33: 4.1880 L12: -1.0905 REMARK 3 L13: 1.0944 L23: -1.3284 REMARK 3 S TENSOR REMARK 3 S11: -0.0527 S12: -0.0972 S13: -0.0788 REMARK 3 S21: 0.0001 S22: 0.0452 S23: 0.5921 REMARK 3 S31: -0.3438 S32: -0.3842 S33: 0.0074 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 115 D 188 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7335 -9.9918 30.8417 REMARK 3 T TENSOR REMARK 3 T11: 0.1074 T22: 0.0560 REMARK 3 T33: 0.0378 T12: 0.0094 REMARK 3 T13: 0.0084 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.7416 L22: 1.4645 REMARK 3 L33: 1.5381 L12: -0.1810 REMARK 3 L13: 0.5063 L23: -0.2612 REMARK 3 S TENSOR REMARK 3 S11: 0.0100 S12: -0.0708 S13: -0.0193 REMARK 3 S21: 0.0097 S22: -0.0510 S23: 0.0023 REMARK 3 S31: -0.0579 S32: 0.0350 S33: 0.0410 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2YH6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-APR-11. REMARK 100 THE PDBE ID CODE IS EBI-48130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56570 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.55 REMARK 200 RESOLUTION RANGE LOW (A) : 40.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.7 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 3.4 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.10 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SHARP, DM, BUCCANEER REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M (NH4)2SO4, 0.1 M CITRIC ACID PH 3.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 87 REMARK 465 ARG A 88 REMARK 465 GLY A 89 REMARK 465 SER A 188 REMARK 465 ARG B 88 REMARK 465 GLY B 89 REMARK 465 ASP B 128 REMARK 465 GLU B 129 REMARK 465 ASP B 130 REMARK 465 ARG C 88 REMARK 465 GLY C 89 REMARK 465 SER C 188 REMARK 465 ARG D 88 REMARK 465 GLY D 89 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 86 CG OD1 ND2 REMARK 470 LEU B 127 CG CD1 CD2 REMARK 470 GLU B 131 CG CD OE1 OE2 REMARK 470 LYS B 142 CG CD CE NZ REMARK 470 GLN B 144 CG CD OE1 NE2 REMARK 470 TYR B 146 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU C 127 CG CD1 CD2 REMARK 470 ASP C 130 CG OD1 OD2 REMARK 470 GLU C 131 CG CD OE1 OE2 REMARK 470 GLU D 131 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY B 77 O HOH A 2007 1.64 REMARK 500 O GLN B 144 O GLN B 147 1.97 REMARK 500 NZ LYS C 162 O HOH C 2021 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 146 O ALA C 165 1665 2.08 REMARK 500 NZ LYS B 187 NZ LYS C 187 1554 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 77 N GLY A 77 CA 0.218 REMARK 500 GLY B 77 C GLY B 77 O -0.109 REMARK 500 SER B 81 CB SER B 81 OG -0.103 REMARK 500 ASP B 111 CB ASP B 111 CG -0.143 REMARK 500 GLY C 77 N GLY C 77 CA 0.106 REMARK 500 GLY C 77 C GLY C 77 O -0.182 REMARK 500 SER C 81 CB SER C 81 OG -0.107 REMARK 500 ASP C 111 CB ASP C 111 CG -0.167 REMARK 500 GLU C 176 CG GLU C 176 CD -0.092 REMARK 500 GLY D 77 N GLY D 77 CA 0.242 REMARK 500 LYS D 103 CD LYS D 103 CE -0.210 REMARK 500 ARG D 126 CB ARG D 126 CG -0.227 REMARK 500 SER D 140 CB SER D 140 OG -0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 77 N - CA - C ANGL. DEV. = 26.4 DEGREES REMARK 500 ASP A 78 N - CA - C ANGL. DEV. = 18.5 DEGREES REMARK 500 ARG A 110 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 111 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 136 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 136 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 172 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 LEU B 83 CA - CB - CG ANGL. DEV. = -23.9 DEGREES REMARK 500 ARG B 110 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG B 136 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 GLN B 144 N - CA - C ANGL. DEV. = -31.0 DEGREES REMARK 500 GLU B 176 OE1 - CD - OE2 ANGL. DEV. = 7.3 DEGREES REMARK 500 MET B 177 CG - SD - CE ANGL. DEV. = -10.2 DEGREES REMARK 500 GLY C 77 N - CA - C ANGL. DEV. = 24.9 DEGREES REMARK 500 ASP C 78 CB - CG - OD1 ANGL. DEV. = 12.0 DEGREES REMARK 500 ASP C 78 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG C 110 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP C 120 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG C 136 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 GLY C 145 N - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 ARG C 172 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 MET C 177 CG - SD - CE ANGL. DEV. = -13.4 DEGREES REMARK 500 GLY D 77 N - CA - C ANGL. DEV. = 27.9 DEGREES REMARK 500 ASP D 78 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 LEU D 83 CA - CB - CG ANGL. DEV. = -23.7 DEGREES REMARK 500 ARG D 110 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG D 126 CB - CA - C ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG D 126 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG D 172 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG D 172 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 78 -89.00 61.99 REMARK 500 THR A 91 70.68 -25.86 REMARK 500 TYR A 146 -79.20 82.90 REMARK 500 GLN A 147 -162.10 -115.96 REMARK 500 ALA A 160 45.32 38.30 REMARK 500 ALA A 165 18.68 -141.96 REMARK 500 THR B 91 70.10 -29.74 REMARK 500 TYR B 146 -40.71 5.30 REMARK 500 GLN B 147 -168.57 -104.75 REMARK 500 ALA B 160 37.59 37.95 REMARK 500 LYS B 187 -145.52 -115.07 REMARK 500 ASP C 78 -32.69 -141.44 REMARK 500 THR C 91 72.65 -31.43 REMARK 500 ASP C 130 9.82 -60.70 REMARK 500 GLU C 131 21.88 -158.42 REMARK 500 ALA C 165 17.81 -145.54 REMARK 500 ASP D 78 -86.07 69.66 REMARK 500 GLU D 85 56.28 -96.84 REMARK 500 THR D 91 70.39 -24.87 REMARK 500 ALA D 165 17.41 -142.51 REMARK 500 ASP D 186 -67.05 -92.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 145 TYR A 146 33.17 REMARK 500 LYS B 187 SER B 188 146.96 REMARK 500 GLY C 77 ASP C 78 -140.89 REMARK 500 GLN C 144 GLY C 145 -149.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP C 111 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP A 78 17.4 L L OUTSIDE RANGE REMARK 500 ASP A 130 24.3 L L OUTSIDE RANGE REMARK 500 GLN B 144 52.3 L L OUTSIDE RANGE REMARK 500 TYR B 146 22.3 L L OUTSIDE RANGE REMARK 500 SER B 188 24.4 L L OUTSIDE RANGE REMARK 500 ASP D 78 17.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1188 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1189 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C1188 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1189 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D1189 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1190 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YH5 RELATED DB: PDB REMARK 900 STRUCTURE OF THE C-TERMINAL DOMAIN OF BAMC REMARK 900 RELATED ID: 2YH3 RELATED DB: PDB REMARK 900 THE STRUCTURE OF BAMB FROM E. COLI REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DOMAIN WAS IDENTIFIED BY LIMITED PROTEOLYSIS. REMARK 999 THEREFORE, THE N- AND C-TERMINUS ARE NOT DEFINED. DBREF 2YH6 A 77 188 UNP P0A903 NLPB_ECOLI 101 212 DBREF 2YH6 B 77 188 UNP P0A903 NLPB_ECOLI 101 212 DBREF 2YH6 C 77 188 UNP P0A903 NLPB_ECOLI 101 212 DBREF 2YH6 D 77 188 UNP P0A903 NLPB_ECOLI 101 212 SEQRES 1 A 112 GLY ASP THR ALA SER LEU LEU VAL GLU ASN GLY ARG GLY SEQRES 2 A 112 ASN THR LEU TRP PRO GLN VAL VAL SER VAL LEU GLN ALA SEQRES 3 A 112 LYS ASN TYR THR ILE THR GLN ARG ASP ASP ALA GLY GLN SEQRES 4 A 112 THR LEU THR THR ASP TRP VAL GLN TRP ASN ARG LEU ASP SEQRES 5 A 112 GLU ASP GLU GLN TYR ARG GLY ARG TYR GLN ILE SER VAL SEQRES 6 A 112 LYS PRO GLN GLY TYR GLN GLN ALA VAL THR VAL LYS LEU SEQRES 7 A 112 LEU ASN LEU GLU GLN ALA GLY LYS PRO VAL ALA ASP ALA SEQRES 8 A 112 ALA SER MET GLN ARG TYR SER THR GLU MET MET ASN VAL SEQRES 9 A 112 ILE SER ALA GLY LEU ASP LYS SER SEQRES 1 B 112 GLY ASP THR ALA SER LEU LEU VAL GLU ASN GLY ARG GLY SEQRES 2 B 112 ASN THR LEU TRP PRO GLN VAL VAL SER VAL LEU GLN ALA SEQRES 3 B 112 LYS ASN TYR THR ILE THR GLN ARG ASP ASP ALA GLY GLN SEQRES 4 B 112 THR LEU THR THR ASP TRP VAL GLN TRP ASN ARG LEU ASP SEQRES 5 B 112 GLU ASP GLU GLN TYR ARG GLY ARG TYR GLN ILE SER VAL SEQRES 6 B 112 LYS PRO GLN GLY TYR GLN GLN ALA VAL THR VAL LYS LEU SEQRES 7 B 112 LEU ASN LEU GLU GLN ALA GLY LYS PRO VAL ALA ASP ALA SEQRES 8 B 112 ALA SER MET GLN ARG TYR SER THR GLU MET MET ASN VAL SEQRES 9 B 112 ILE SER ALA GLY LEU ASP LYS SER SEQRES 1 C 112 GLY ASP THR ALA SER LEU LEU VAL GLU ASN GLY ARG GLY SEQRES 2 C 112 ASN THR LEU TRP PRO GLN VAL VAL SER VAL LEU GLN ALA SEQRES 3 C 112 LYS ASN TYR THR ILE THR GLN ARG ASP ASP ALA GLY GLN SEQRES 4 C 112 THR LEU THR THR ASP TRP VAL GLN TRP ASN ARG LEU ASP SEQRES 5 C 112 GLU ASP GLU GLN TYR ARG GLY ARG TYR GLN ILE SER VAL SEQRES 6 C 112 LYS PRO GLN GLY TYR GLN GLN ALA VAL THR VAL LYS LEU SEQRES 7 C 112 LEU ASN LEU GLU GLN ALA GLY LYS PRO VAL ALA ASP ALA SEQRES 8 C 112 ALA SER MET GLN ARG TYR SER THR GLU MET MET ASN VAL SEQRES 9 C 112 ILE SER ALA GLY LEU ASP LYS SER SEQRES 1 D 112 GLY ASP THR ALA SER LEU LEU VAL GLU ASN GLY ARG GLY SEQRES 2 D 112 ASN THR LEU TRP PRO GLN VAL VAL SER VAL LEU GLN ALA SEQRES 3 D 112 LYS ASN TYR THR ILE THR GLN ARG ASP ASP ALA GLY GLN SEQRES 4 D 112 THR LEU THR THR ASP TRP VAL GLN TRP ASN ARG LEU ASP SEQRES 5 D 112 GLU ASP GLU GLN TYR ARG GLY ARG TYR GLN ILE SER VAL SEQRES 6 D 112 LYS PRO GLN GLY TYR GLN GLN ALA VAL THR VAL LYS LEU SEQRES 7 D 112 LEU ASN LEU GLU GLN ALA GLY LYS PRO VAL ALA ASP ALA SEQRES 8 D 112 ALA SER MET GLN ARG TYR SER THR GLU MET MET ASN VAL SEQRES 9 D 112 ILE SER ALA GLY LEU ASP LYS SER HET SO4 A1188 5 HET SO4 A1189 5 HET SO4 A1190 5 HET SO4 B1189 5 HET SO4 C1188 5 HET SO4 D1189 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 6(O4 S 2-) FORMUL 6 HOH *136(H2 O) HELIX 1 1 THR A 91 LYS A 103 1 13 HELIX 2 2 ASP A 112 GLY A 114 5 3 HELIX 3 3 ASP A 128 GLU A 131 5 4 HELIX 4 4 ASP A 166 LEU A 185 1 20 HELIX 5 5 THR B 91 LYS B 103 1 13 HELIX 6 6 ASP B 112 GLY B 114 5 3 HELIX 7 7 ASP B 166 LYS B 187 1 22 HELIX 8 8 THR C 91 LYS C 103 1 13 HELIX 9 9 ASP C 112 GLY C 114 5 3 HELIX 10 10 ASP C 128 GLU C 131 5 4 HELIX 11 11 ASP C 166 LYS C 187 1 22 HELIX 12 12 THR D 91 LYS D 103 1 13 HELIX 13 13 ASP D 112 GLY D 114 5 3 HELIX 14 14 ASP D 128 GLU D 131 5 4 HELIX 15 15 ASP D 166 LYS D 187 1 22 SHEET 1 AA 5 ILE A 107 ASP A 111 0 SHEET 2 AA 5 THR A 116 THR A 119 -1 O THR A 116 N ASP A 111 SHEET 3 AA 5 TYR A 133 GLN A 144 -1 O TYR A 137 N THR A 119 SHEET 4 AA 5 GLN A 147 GLN A 159 -1 O GLN A 147 N GLN A 144 SHEET 5 AA 5 LYS A 162 VAL A 164 -1 O LYS A 162 N GLN A 159 SHEET 1 AB 4 ILE A 107 ASP A 111 0 SHEET 2 AB 4 THR A 116 THR A 119 -1 O THR A 116 N ASP A 111 SHEET 3 AB 4 TYR A 133 GLN A 144 -1 O TYR A 137 N THR A 119 SHEET 4 AB 4 VAL A 122 TRP A 124 1 O VAL A 122 N GLY A 135 SHEET 1 AC 2 LYS A 162 VAL A 164 0 SHEET 2 AC 2 GLN A 147 GLN A 159 -1 O LEU A 157 N VAL A 164 SHEET 1 AD 8 ILE A 107 ASP A 111 0 SHEET 2 AD 8 THR A 116 THR A 119 -1 O THR A 116 N ASP A 111 SHEET 3 AD 8 TYR A 133 GLN A 144 -1 O TYR A 137 N THR A 119 SHEET 4 AD 8 GLN A 147 GLN A 159 -1 O GLN A 147 N GLN A 144 SHEET 5 AD 8 THR A 79 VAL A 84 -1 O ALA A 80 N VAL A 152 SHEET 6 AD 8 THR B 79 VAL B 84 -1 O THR B 79 N LEU A 83 SHEET 7 AD 8 GLN B 148 GLN B 159 -1 O GLN B 148 N VAL B 84 SHEET 8 AD 8 LYS B 162 PRO B 163 -1 O LYS B 162 N GLN B 159 SHEET 1 AE 9 ILE A 107 ASP A 111 0 SHEET 2 AE 9 THR A 116 THR A 119 -1 O THR A 116 N ASP A 111 SHEET 3 AE 9 TYR A 133 GLN A 144 -1 O TYR A 137 N THR A 119 SHEET 4 AE 9 GLN A 147 GLN A 159 -1 O GLN A 147 N GLN A 144 SHEET 5 AE 9 THR A 79 VAL A 84 -1 O ALA A 80 N VAL A 152 SHEET 6 AE 9 THR B 79 VAL B 84 -1 O THR B 79 N LEU A 83 SHEET 7 AE 9 GLN B 148 GLN B 159 -1 O GLN B 148 N VAL B 84 SHEET 8 AE 9 TYR B 133 VAL B 141 -1 O ARG B 134 N GLU B 158 SHEET 9 AE 9 VAL B 122 TRP B 124 -1 O VAL B 122 N GLY B 135 SHEET 1 BA 5 ILE B 107 ASP B 111 0 SHEET 2 BA 5 THR B 116 THR B 119 -1 O THR B 116 N ASP B 111 SHEET 3 BA 5 TYR B 133 VAL B 141 -1 O TYR B 137 N THR B 119 SHEET 4 BA 5 GLN B 148 GLN B 159 -1 O THR B 151 N SER B 140 SHEET 5 BA 5 LYS B 162 PRO B 163 -1 O LYS B 162 N GLN B 159 SHEET 1 AF10 ILE A 107 ASP A 111 0 SHEET 2 AF10 THR A 116 THR A 119 -1 O THR A 116 N ASP A 111 SHEET 3 AF10 TYR A 133 GLN A 144 -1 O TYR A 137 N THR A 119 SHEET 4 AF10 GLN A 147 GLN A 159 -1 O GLN A 147 N GLN A 144 SHEET 5 AF10 THR A 79 VAL A 84 -1 O ALA A 80 N VAL A 152 SHEET 6 AF10 THR B 79 VAL B 84 -1 O THR B 79 N LEU A 83 SHEET 7 AF10 GLN B 148 GLN B 159 -1 O GLN B 148 N VAL B 84 SHEET 8 AF10 TYR B 133 VAL B 141 -1 O ARG B 134 N GLU B 158 SHEET 9 AF10 THR B 116 THR B 119 -1 O LEU B 117 N ILE B 139 SHEET 10 AF10 ILE B 107 ASP B 111 -1 N THR B 108 O THR B 118 SHEET 1 BB 4 ILE B 107 ASP B 111 0 SHEET 2 BB 4 THR B 116 THR B 119 -1 O THR B 116 N ASP B 111 SHEET 3 BB 4 TYR B 133 VAL B 141 -1 O TYR B 137 N THR B 119 SHEET 4 BB 4 VAL B 122 TRP B 124 -1 O VAL B 122 N GLY B 135 SHEET 1 BC 2 LYS B 162 PRO B 163 0 SHEET 2 BC 2 GLN B 148 GLN B 159 -1 O GLN B 159 N LYS B 162 SHEET 1 BD 8 ILE B 107 ASP B 111 0 SHEET 2 BD 8 THR B 116 THR B 119 -1 O THR B 116 N ASP B 111 SHEET 3 BD 8 TYR B 133 VAL B 141 -1 O TYR B 137 N THR B 119 SHEET 4 BD 8 GLN B 148 GLN B 159 -1 O THR B 151 N SER B 140 SHEET 5 BD 8 THR B 79 VAL B 84 -1 O ALA B 80 N VAL B 152 SHEET 6 BD 8 THR A 79 VAL A 84 -1 O THR A 79 N LEU B 83 SHEET 7 BD 8 GLN A 147 GLN A 159 -1 O GLN A 148 N VAL A 84 SHEET 8 BD 8 LYS A 162 VAL A 164 -1 O LYS A 162 N GLN A 159 SHEET 1 BE 9 ILE B 107 ASP B 111 0 SHEET 2 BE 9 THR B 116 THR B 119 -1 O THR B 116 N ASP B 111 SHEET 3 BE 9 TYR B 133 VAL B 141 -1 O TYR B 137 N THR B 119 SHEET 4 BE 9 GLN B 148 GLN B 159 -1 O THR B 151 N SER B 140 SHEET 5 BE 9 THR B 79 VAL B 84 -1 O ALA B 80 N VAL B 152 SHEET 6 BE 9 THR A 79 VAL A 84 -1 O THR A 79 N LEU B 83 SHEET 7 BE 9 GLN A 147 GLN A 159 -1 O GLN A 148 N VAL A 84 SHEET 8 BE 9 TYR A 133 GLN A 144 -1 O ARG A 134 N GLU A 158 SHEET 9 BE 9 VAL A 122 TRP A 124 1 O VAL A 122 N GLY A 135 SHEET 1 CA 5 ILE C 107 ASP C 111 0 SHEET 2 CA 5 THR C 116 THR C 119 -1 O THR C 116 N ASP C 111 SHEET 3 CA 5 TYR C 133 GLN C 144 -1 O TYR C 137 N THR C 119 SHEET 4 CA 5 GLN C 147 GLN C 159 -1 O GLN C 147 N GLN C 144 SHEET 5 CA 5 LYS C 162 PRO C 163 -1 O LYS C 162 N GLN C 159 SHEET 1 CB 4 ILE C 107 ASP C 111 0 SHEET 2 CB 4 THR C 116 THR C 119 -1 O THR C 116 N ASP C 111 SHEET 3 CB 4 TYR C 133 GLN C 144 -1 O TYR C 137 N THR C 119 SHEET 4 CB 4 VAL C 122 TRP C 124 1 O VAL C 122 N GLY C 135 SHEET 1 CC 2 LYS C 162 PRO C 163 0 SHEET 2 CC 2 GLN C 147 GLN C 159 -1 O GLN C 159 N LYS C 162 SHEET 1 CD 8 ILE C 107 ASP C 111 0 SHEET 2 CD 8 THR C 116 THR C 119 -1 O THR C 116 N ASP C 111 SHEET 3 CD 8 TYR C 133 GLN C 144 -1 O TYR C 137 N THR C 119 SHEET 4 CD 8 GLN C 147 GLN C 159 -1 O GLN C 147 N GLN C 144 SHEET 5 CD 8 THR C 79 VAL C 84 -1 O ALA C 80 N VAL C 152 SHEET 6 CD 8 THR D 79 VAL D 84 -1 O THR D 79 N LEU C 83 SHEET 7 CD 8 GLN D 147 GLN D 159 -1 O GLN D 148 N VAL D 84 SHEET 8 CD 8 LYS D 162 PRO D 163 -1 O LYS D 162 N GLN D 159 SHEET 1 CE 9 ILE C 107 ASP C 111 0 SHEET 2 CE 9 THR C 116 THR C 119 -1 O THR C 116 N ASP C 111 SHEET 3 CE 9 TYR C 133 GLN C 144 -1 O TYR C 137 N THR C 119 SHEET 4 CE 9 GLN C 147 GLN C 159 -1 O GLN C 147 N GLN C 144 SHEET 5 CE 9 THR C 79 VAL C 84 -1 O ALA C 80 N VAL C 152 SHEET 6 CE 9 THR D 79 VAL D 84 -1 O THR D 79 N LEU C 83 SHEET 7 CE 9 GLN D 147 GLN D 159 -1 O GLN D 148 N VAL D 84 SHEET 8 CE 9 TYR D 133 GLN D 144 -1 O ARG D 134 N GLU D 158 SHEET 9 CE 9 VAL D 122 TRP D 124 -1 O VAL D 122 N GLY D 135 SHEET 1 DA 5 ILE D 107 ASP D 111 0 SHEET 2 DA 5 THR D 116 THR D 119 -1 O THR D 116 N ASP D 111 SHEET 3 DA 5 TYR D 133 GLN D 144 -1 O TYR D 137 N THR D 119 SHEET 4 DA 5 GLN D 147 GLN D 159 -1 O GLN D 147 N GLN D 144 SHEET 5 DA 5 LYS D 162 PRO D 163 -1 O LYS D 162 N GLN D 159 SHEET 1 CF10 ILE C 107 ASP C 111 0 SHEET 2 CF10 THR C 116 THR C 119 -1 O THR C 116 N ASP C 111 SHEET 3 CF10 TYR C 133 GLN C 144 -1 O TYR C 137 N THR C 119 SHEET 4 CF10 GLN C 147 GLN C 159 -1 O GLN C 147 N GLN C 144 SHEET 5 CF10 THR C 79 VAL C 84 -1 O ALA C 80 N VAL C 152 SHEET 6 CF10 THR D 79 VAL D 84 -1 O THR D 79 N LEU C 83 SHEET 7 CF10 GLN D 147 GLN D 159 -1 O GLN D 148 N VAL D 84 SHEET 8 CF10 TYR D 133 GLN D 144 -1 O ARG D 134 N GLU D 158 SHEET 9 CF10 THR D 116 THR D 119 -1 O LEU D 117 N ILE D 139 SHEET 10 CF10 ILE D 107 ASP D 111 -1 N THR D 108 O THR D 118 SHEET 1 DB 4 ILE D 107 ASP D 111 0 SHEET 2 DB 4 THR D 116 THR D 119 -1 O THR D 116 N ASP D 111 SHEET 3 DB 4 TYR D 133 GLN D 144 -1 O TYR D 137 N THR D 119 SHEET 4 DB 4 VAL D 122 TRP D 124 -1 O VAL D 122 N GLY D 135 SHEET 1 DC 2 LYS D 162 PRO D 163 0 SHEET 2 DC 2 GLN D 147 GLN D 159 -1 O GLN D 159 N LYS D 162 SHEET 1 DD 8 ILE D 107 ASP D 111 0 SHEET 2 DD 8 THR D 116 THR D 119 -1 O THR D 116 N ASP D 111 SHEET 3 DD 8 TYR D 133 GLN D 144 -1 O TYR D 137 N THR D 119 SHEET 4 DD 8 GLN D 147 GLN D 159 -1 O GLN D 147 N GLN D 144 SHEET 5 DD 8 THR D 79 VAL D 84 -1 O ALA D 80 N VAL D 152 SHEET 6 DD 8 THR C 79 VAL C 84 -1 O THR C 79 N LEU D 83 SHEET 7 DD 8 GLN C 147 GLN C 159 -1 O GLN C 148 N VAL C 84 SHEET 8 DD 8 LYS C 162 PRO C 163 -1 O LYS C 162 N GLN C 159 SHEET 1 DE 9 ILE D 107 ASP D 111 0 SHEET 2 DE 9 THR D 116 THR D 119 -1 O THR D 116 N ASP D 111 SHEET 3 DE 9 TYR D 133 GLN D 144 -1 O TYR D 137 N THR D 119 SHEET 4 DE 9 GLN D 147 GLN D 159 -1 O GLN D 147 N GLN D 144 SHEET 5 DE 9 THR D 79 VAL D 84 -1 O ALA D 80 N VAL D 152 SHEET 6 DE 9 THR C 79 VAL C 84 -1 O THR C 79 N LEU D 83 SHEET 7 DE 9 GLN C 147 GLN C 159 -1 O GLN C 148 N VAL C 84 SHEET 8 DE 9 TYR C 133 GLN C 144 -1 O ARG C 134 N GLU C 158 SHEET 9 DE 9 VAL C 122 TRP C 124 1 O VAL C 122 N GLY C 135 CISPEP 1 GLY B 145 TYR B 146 0 14.02 CISPEP 2 GLY C 145 TYR C 146 0 19.57 SITE 1 AC1 5 ARG A 126 LEU A 127 ASP A 128 ALA C 183 SITE 2 AC1 5 ARG D 172 SITE 1 AC2 5 ARG A 172 ALA B 183 ARG D 126 LEU D 127 SITE 2 AC2 5 ASP D 128 SITE 1 AC3 8 GLN C 101 ILE C 107 ARG C 110 HOH C2008 SITE 2 AC3 8 HOH C2010 GLN D 101 ILE D 107 ARG D 110 SITE 1 AC4 5 THR A 108 GLN A 109 ARG A 136 LYS B 162 SITE 2 AC4 5 HOH B2022 SITE 1 AC5 4 HOH C2029 ARG D 126 TYR D 133 GLN D 159 SITE 1 AC6 2 ASN A 125 ASN D 125 CRYST1 46.577 46.631 60.208 102.70 92.86 118.20 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021470 0.011512 0.004429 0.00000 SCALE2 0.000000 0.024333 0.007003 0.00000 SCALE3 0.000000 0.000000 0.017305 0.00000