HEADER MEMBRANE PROTEIN 27-APR-11 2YH9 TITLE CRYSTAL STRUCTURE OF THE DIMERIC BAME FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL PROTEIN A; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 34-113; COMPND 5 SYNONYM: BAME PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: LIPOPROTEIN SMPA/BAME SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET24D KEYWDS LIPOPROTEIN, 3D DOMAIN SWAP, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.ZETH,R.ALBRECHT REVDAT 2 10-AUG-11 2YH9 1 JRNL REMARK VERSN REVDAT 1 29-JUN-11 2YH9 0 JRNL AUTH R.ALBRECHT,K.ZETH JRNL TITL STRUCTURAL BASIS OF OUTER MEMBRANE PROTEIN JRNL TITL 2 BIOGENESIS IN BACTERIA. JRNL REF J.BIOL.CHEM. V. 286 27792 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21586578 JRNL DOI 10.1074/JBC.M111.238931 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 100.00 REMARK 3 NUMBER OF REFLECTIONS : 21093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.18366 REMARK 3 R VALUE (WORKING SET) : 0.18121 REMARK 3 FREE R VALUE : 0.22859 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1111 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.800 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.846 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1549 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.263 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.317 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1575 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.797 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.65 REMARK 3 B22 (A**2) : -0.61 REMARK 3 B33 (A**2) : -0.07 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.69 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.190 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.828 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1613 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2201 ; 1.831 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 202 ; 5.511 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 73 ;41.539 ;24.795 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 255 ;14.555 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;20.860 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 253 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1231 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1002 ; 1.548 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1637 ; 2.540 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 611 ; 3.709 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 562 ; 5.501 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1613 ; 2.502 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 10 A 60 3 REMARK 3 1 B 10 B 60 3 REMARK 3 1 C 10 C 60 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 203 ; 0.11 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 203 ; 0.18 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 C (A): 203 ; 0.12 ; 0.05 REMARK 3 LOOSE POSITIONAL 1 A (A): 193 ; 0.13 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 193 ; 0.21 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 193 ; 0.14 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 203 ; 0.31 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 203 ; 0.29 ; 0.50 REMARK 3 TIGHT THERMAL 1 C (A**2): 203 ; 0.32 ; 0.50 REMARK 3 LOOSE THERMAL 1 A (A**2): 193 ; 0.31 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 193 ; 0.34 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 193 ; 0.29 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 28 REMARK 3 ORIGIN FOR THE GROUP (A): -18.4530 42.8400 3.8460 REMARK 3 T TENSOR REMARK 3 T11: 0.0189 T22: 0.1653 REMARK 3 T33: 0.0564 T12: -0.0363 REMARK 3 T13: -0.0089 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 2.0115 L22: 1.1589 REMARK 3 L33: 1.8960 L12: -1.2436 REMARK 3 L13: -1.6774 L23: 0.5983 REMARK 3 S TENSOR REMARK 3 S11: -0.0894 S12: 0.3585 S13: -0.1711 REMARK 3 S21: 0.0323 S22: -0.1156 S23: 0.0449 REMARK 3 S31: 0.1056 S32: -0.4179 S33: 0.2050 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0940 34.4940 8.4380 REMARK 3 T TENSOR REMARK 3 T11: 0.0636 T22: 0.0713 REMARK 3 T33: 0.0770 T12: 0.0315 REMARK 3 T13: 0.0047 T23: 0.0389 REMARK 3 L TENSOR REMARK 3 L11: 0.8083 L22: 0.6069 REMARK 3 L33: 1.6628 L12: 0.4706 REMARK 3 L13: -0.9505 L23: -0.6875 REMARK 3 S TENSOR REMARK 3 S11: -0.0971 S12: -0.0800 S13: -0.1559 REMARK 3 S21: -0.0862 S22: -0.0715 S23: -0.0805 REMARK 3 S31: 0.2323 S32: 0.1390 S33: 0.1686 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5710 26.5920 6.6940 REMARK 3 T TENSOR REMARK 3 T11: 0.1460 T22: 0.0260 REMARK 3 T33: 0.1886 T12: 0.0545 REMARK 3 T13: 0.0714 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 3.3036 L22: 11.3828 REMARK 3 L33: 16.6572 L12: 1.7525 REMARK 3 L13: -6.9023 L23: -8.4862 REMARK 3 S TENSOR REMARK 3 S11: -0.2011 S12: -0.0746 S13: -0.0021 REMARK 3 S21: -0.4810 S22: 0.0454 S23: -0.3736 REMARK 3 S31: 0.6106 S32: 0.1242 S33: 0.1557 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 11 REMARK 3 ORIGIN FOR THE GROUP (A): -7.0140 63.1040 -18.9520 REMARK 3 T TENSOR REMARK 3 T11: 0.5581 T22: 0.2286 REMARK 3 T33: 0.0670 T12: -0.2664 REMARK 3 T13: 0.1174 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 1.2885 L22: 6.3591 REMARK 3 L33: 21.5786 L12: 1.0784 REMARK 3 L13: -4.3009 L23: 2.4684 REMARK 3 S TENSOR REMARK 3 S11: -0.4575 S12: 0.5235 S13: -0.0592 REMARK 3 S21: -1.7719 S22: 0.7043 S23: -0.4630 REMARK 3 S31: 0.1490 S32: -1.4969 S33: -0.2468 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 64 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8010 57.8290 5.4860 REMARK 3 T TENSOR REMARK 3 T11: 0.0486 T22: 0.0425 REMARK 3 T33: 0.0530 T12: 0.0069 REMARK 3 T13: -0.0288 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.2456 L22: 0.4367 REMARK 3 L33: 1.4973 L12: 0.0414 REMARK 3 L13: -0.0983 L23: -0.5690 REMARK 3 S TENSOR REMARK 3 S11: 0.0147 S12: -0.0096 S13: 0.0420 REMARK 3 S21: 0.0609 S22: -0.0175 S23: 0.0408 REMARK 3 S31: -0.1218 S32: -0.0305 S33: 0.0029 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 65 B 72 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6840 57.2330 19.4430 REMARK 3 T TENSOR REMARK 3 T11: 0.1619 T22: 0.1845 REMARK 3 T33: 0.0559 T12: 0.0402 REMARK 3 T13: 0.0375 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.2308 L22: 22.7676 REMARK 3 L33: 1.0636 L12: -0.2999 REMARK 3 L13: -0.4168 L23: -1.8675 REMARK 3 S TENSOR REMARK 3 S11: -0.0427 S12: -0.0844 S13: -0.0993 REMARK 3 S21: 0.9078 S22: -0.1281 S23: 0.1735 REMARK 3 S31: -0.0794 S32: 0.1132 S33: 0.1708 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 11 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7500 30.0050 18.0320 REMARK 3 T TENSOR REMARK 3 T11: 0.0917 T22: 0.0675 REMARK 3 T33: 0.2055 T12: 0.0148 REMARK 3 T13: -0.0141 T23: 0.0461 REMARK 3 L TENSOR REMARK 3 L11: 32.7015 L22: 9.7256 REMARK 3 L33: 26.9508 L12: 0.0000 REMARK 3 L13: -7.0482 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.9388 S12: 0.1595 S13: 0.4349 REMARK 3 S21: 0.5899 S22: -0.1237 S23: -0.7403 REMARK 3 S31: -0.6887 S32: 0.4029 S33: -0.8152 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 12 C 32 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8290 37.2770 14.4620 REMARK 3 T TENSOR REMARK 3 T11: 0.0668 T22: 0.0832 REMARK 3 T33: 0.1452 T12: -0.0231 REMARK 3 T13: 0.0346 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.6761 L22: 3.0099 REMARK 3 L33: 0.1187 L12: -2.0913 REMARK 3 L13: 0.3154 L23: -0.5453 REMARK 3 S TENSOR REMARK 3 S11: -0.0897 S12: 0.0347 S13: -0.1655 REMARK 3 S21: 0.0520 S22: 0.0383 S23: -0.0038 REMARK 3 S31: 0.0102 S32: -0.0231 S33: 0.0513 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 33 C 71 REMARK 3 ORIGIN FOR THE GROUP (A): -15.1940 51.1540 4.9040 REMARK 3 T TENSOR REMARK 3 T11: 0.0491 T22: 0.1215 REMARK 3 T33: 0.0703 T12: 0.0104 REMARK 3 T13: -0.0160 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.0054 L22: 1.1162 REMARK 3 L33: 2.0798 L12: 0.9284 REMARK 3 L13: -1.3657 L23: -1.0656 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: 0.1060 S13: 0.0336 REMARK 3 S21: 0.0527 S22: -0.0102 S23: 0.0580 REMARK 3 S31: -0.0096 S32: -0.2458 S33: 0.0109 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2YH9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUN-11. REMARK 100 THE PDBE ID CODE IS EBI-48141. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PSI PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21093 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.80 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.8 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.7 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP, DM, BUCCANEER REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 10% I-PROH, 0.1 M REMARK 280 HEPES PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.83000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.26000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.83000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.26000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -116.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2024 LIES ON A SPECIAL POSITION. REMARK 375 HOH C2019 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 ASN A -2 REMARK 465 TYR A -1 REMARK 465 LEU A 0 REMARK 465 THR A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 ASP A 4 REMARK 465 ALA A 71 REMARK 465 LEU A 72 REMARK 465 SER A 73 REMARK 465 GLY A 74 REMARK 465 ASN A 75 REMARK 465 LEU A 76 REMARK 465 GLU A 77 REMARK 465 HIS A 78 REMARK 465 HIS A 79 REMARK 465 HIS A 80 REMARK 465 HIS A 81 REMARK 465 HIS A 82 REMARK 465 HIS A 83 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 ASN B -2 REMARK 465 TYR B -1 REMARK 465 LEU B 0 REMARK 465 THR B 1 REMARK 465 ALA B 2 REMARK 465 ASN B 3 REMARK 465 ASP B 4 REMARK 465 SER B 73 REMARK 465 GLY B 74 REMARK 465 ASN B 75 REMARK 465 LEU B 76 REMARK 465 GLU B 77 REMARK 465 HIS B 78 REMARK 465 HIS B 79 REMARK 465 HIS B 80 REMARK 465 HIS B 81 REMARK 465 HIS B 82 REMARK 465 HIS B 83 REMARK 465 GLN C -4 REMARK 465 GLY C -3 REMARK 465 ASN C -2 REMARK 465 TYR C -1 REMARK 465 LEU C 0 REMARK 465 THR C 1 REMARK 465 ALA C 2 REMARK 465 ASN C 3 REMARK 465 ASP C 4 REMARK 465 LEU C 72 REMARK 465 SER C 73 REMARK 465 GLY C 74 REMARK 465 ASN C 75 REMARK 465 LEU C 76 REMARK 465 GLU C 77 REMARK 465 HIS C 78 REMARK 465 HIS C 79 REMARK 465 HIS C 80 REMARK 465 HIS C 81 REMARK 465 HIS C 82 REMARK 465 HIS C 83 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 51 O HOH A 2033 2.14 REMARK 500 OD1 ASN B 33 O HOH B 2026 2.03 REMARK 500 O HOH B 2026 O HOH B 2027 1.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 40 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER C 6 160.00 173.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LYS C 7 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 2YH9 A -4 75 UNP P0A937 SMPA_ECOLI 34 113 DBREF 2YH9 B -4 75 UNP P0A937 SMPA_ECOLI 34 113 DBREF 2YH9 C -4 75 UNP P0A937 SMPA_ECOLI 34 113 SEQADV 2YH9 LEU A 76 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 GLU A 77 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 HIS A 78 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 HIS A 79 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 HIS A 80 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 HIS A 81 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 HIS A 82 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 HIS A 83 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 LEU B 76 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 GLU B 77 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 HIS B 78 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 HIS B 79 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 HIS B 80 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 HIS B 81 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 HIS B 82 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 HIS B 83 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 LEU C 76 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 GLU C 77 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 HIS C 78 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 HIS C 79 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 HIS C 80 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 HIS C 81 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 HIS C 82 UNP P0A937 EXPRESSION TAG SEQADV 2YH9 HIS C 83 UNP P0A937 EXPRESSION TAG SEQRES 1 A 88 GLN GLY ASN TYR LEU THR ALA ASN ASP VAL SER LYS ILE SEQRES 2 A 88 ARG VAL GLY MSE THR GLN GLN GLN VAL ALA TYR ALA LEU SEQRES 3 A 88 GLY THR PRO LEU MSE SER ASP PRO PHE GLY THR ASN THR SEQRES 4 A 88 TRP PHE TYR VAL PHE ARG GLN GLN PRO GLY HIS GLU GLY SEQRES 5 A 88 VAL THR GLN GLN THR LEU THR LEU THR PHE ASN SER SER SEQRES 6 A 88 GLY VAL LEU THR ASN ILE ASP ASN LYS PRO ALA LEU SER SEQRES 7 A 88 GLY ASN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 88 GLN GLY ASN TYR LEU THR ALA ASN ASP VAL SER LYS ILE SEQRES 2 B 88 ARG VAL GLY MSE THR GLN GLN GLN VAL ALA TYR ALA LEU SEQRES 3 B 88 GLY THR PRO LEU MSE SER ASP PRO PHE GLY THR ASN THR SEQRES 4 B 88 TRP PHE TYR VAL PHE ARG GLN GLN PRO GLY HIS GLU GLY SEQRES 5 B 88 VAL THR GLN GLN THR LEU THR LEU THR PHE ASN SER SER SEQRES 6 B 88 GLY VAL LEU THR ASN ILE ASP ASN LYS PRO ALA LEU SER SEQRES 7 B 88 GLY ASN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 88 GLN GLY ASN TYR LEU THR ALA ASN ASP VAL SER LYS ILE SEQRES 2 C 88 ARG VAL GLY MSE THR GLN GLN GLN VAL ALA TYR ALA LEU SEQRES 3 C 88 GLY THR PRO LEU MSE SER ASP PRO PHE GLY THR ASN THR SEQRES 4 C 88 TRP PHE TYR VAL PHE ARG GLN GLN PRO GLY HIS GLU GLY SEQRES 5 C 88 VAL THR GLN GLN THR LEU THR LEU THR PHE ASN SER SER SEQRES 6 C 88 GLY VAL LEU THR ASN ILE ASP ASN LYS PRO ALA LEU SER SEQRES 7 C 88 GLY ASN LEU GLU HIS HIS HIS HIS HIS HIS MODRES 2YH9 MSE A 12 MET SELENOMETHIONINE MODRES 2YH9 MSE A 26 MET SELENOMETHIONINE MODRES 2YH9 MSE B 12 MET SELENOMETHIONINE MODRES 2YH9 MSE B 26 MET SELENOMETHIONINE MODRES 2YH9 MSE C 12 MET SELENOMETHIONINE MODRES 2YH9 MSE C 26 MET SELENOMETHIONINE HET MSE A 12 8 HET MSE A 26 8 HET MSE B 12 8 HET MSE B 26 8 HET MSE C 12 8 HET MSE C 26 8 HETNAM MSE SELENOMETHIONINE FORMUL 4 MSE 6(C5 H11 N O2 SE) FORMUL 5 HOH *174(H2 O) HELIX 1 1 THR A 13 GLY A 22 1 10 HELIX 2 2 THR B 13 GLY B 22 1 10 HELIX 3 3 THR C 13 GLY C 22 1 10 SHEET 1 AA 4 MSE A 26 SER A 27 0 SHEET 2 AA 4 THR C 34 VAL C 38 -1 O PHE C 36 N MSE A 26 SHEET 3 AA 4 THR C 52 PHE C 57 -1 O LEU C 53 N TYR C 37 SHEET 4 AA 4 LEU C 63 ASP C 67 -1 N THR C 64 O THR C 56 SHEET 1 AB 4 LEU A 63 LYS A 69 0 SHEET 2 AB 4 THR A 52 PHE A 57 -1 O THR A 52 N LYS A 69 SHEET 3 AB 4 THR A 34 VAL A 38 -1 O TRP A 35 N LEU A 55 SHEET 4 AB 4 MSE C 26 SER C 27 -1 O MSE C 26 N PHE A 36 SHEET 1 BA 3 THR B 34 VAL B 38 0 SHEET 2 BA 3 THR B 52 PHE B 57 -1 O LEU B 53 N TYR B 37 SHEET 3 BA 3 LEU B 63 LYS B 69 -1 N THR B 64 O THR B 56 LINK C GLY A 11 N MSE A 12 1555 1555 1.35 LINK C MSE A 12 N THR A 13 1555 1555 1.33 LINK C LEU A 25 N MSE A 26 1555 1555 1.34 LINK C MSE A 26 N SER A 27 1555 1555 1.34 LINK C GLY B 11 N MSE B 12 1555 1555 1.33 LINK C MSE B 12 N THR B 13 1555 1555 1.33 LINK C LEU B 25 N MSE B 26 1555 1555 1.31 LINK C MSE B 26 N SER B 27 1555 1555 1.34 LINK C GLY C 11 N MSE C 12 1555 1555 1.33 LINK C MSE C 12 N THR C 13 1555 1555 1.33 LINK C LEU C 25 N MSE C 26 1555 1555 1.33 LINK C MSE C 26 N SER C 27 1555 1555 1.32 CISPEP 1 LYS A 69 PRO A 70 0 -8.59 CISPEP 2 LYS B 69 PRO B 70 0 -1.52 CISPEP 3 LYS C 69 PRO C 70 0 2.36 CISPEP 4 PRO C 70 ALA C 71 0 -7.42 CRYST1 69.660 96.520 50.490 90.00 134.06 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014355 0.000000 0.013892 0.00000 SCALE2 0.000000 0.010361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027561 0.00000