data_2YIF # _entry.id 2YIF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YIF pdb_00002yif 10.2210/pdb2yif/pdb PDBE EBI-48276 ? ? WWPDB D_1290048276 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2YIE _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'CRYSTAL STRUCTURE OF A F. NUCLEATUM FMN RIBOSWITCH BOUND TO FMN' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YIF _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-05-12 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vicens, Q.' 1 'Mondragon, E.' 2 'Batey, R.T.' 3 # _citation.id primary _citation.title 'Molecular Sensing by the Aptamer Domain of the Fmn Riboswitch: A General Model for Ligand Binding by Conformational Selection.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 39 _citation.page_first 8586 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21745821 _citation.pdbx_database_id_DOI 10.1093/NAR/GKR565 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vicens, Q.' 1 ? primary 'Mondragon, E.' 2 ? primary 'Batey, R.T.' 3 ? # _cell.entry_id 2YIF _cell.length_a 73.472 _cell.length_b 73.472 _cell.length_c 135.168 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YIF _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'FMN RIBOSWITCH' 17575.324 1 ? YES 'APTAMER DOMAIN, RESIDUES 2495-2544' ? 2 polymer syn 'FMN RIBOSWITCH' 18661.000 1 ? YES 'APTAMER DOMAIN, RESIDUES 2550-2601' ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 12 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 5 water nat water 18.015 26 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes '(GTP)GAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAUCCAU' GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAUCCAU X ? 2 polyribonucleotide no yes '(GTP)GAUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUCG' GGAUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUCG Z ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 A n 1 4 U n 1 5 C n 1 6 U n 1 7 U n 1 8 C n 1 9 G n 1 10 G n 1 11 G n 1 12 G n 1 13 C n 1 14 A n 1 15 G n 1 16 G n 1 17 G n 1 18 U n 1 19 G n 1 20 A n 1 21 A n 1 22 A n 1 23 U n 1 24 U n 1 25 C n 1 26 C n 1 27 C n 1 28 G n 1 29 A n 1 30 C n 1 31 C n 1 32 G n 1 33 G n 1 34 U n 1 35 G n 1 36 G n 1 37 U n 1 38 A n 1 39 U n 1 40 A n 1 41 G n 1 42 U n 1 43 C n 1 44 C n 1 45 A n 1 46 C n 1 47 G n 1 48 A n 1 49 A n 1 50 U n 1 51 C n 1 52 C n 1 53 A n 1 54 U n 2 1 GTP n 2 2 G n 2 3 A n 2 4 U n 2 5 U n 2 6 G n 2 7 A n 2 8 U n 2 9 U n 2 10 U n 2 11 G n 2 12 G n 2 13 U n 2 14 G n 2 15 A n 2 16 A n 2 17 A n 2 18 U n 2 19 U n 2 20 C n 2 21 C n 2 22 A n 2 23 A n 2 24 A n 2 25 A n 2 26 C n 2 27 C n 2 28 G n 2 29 A n 2 30 C n 2 31 A n 2 32 G n 2 33 U n 2 34 A n 2 35 G n 2 36 A n 2 37 G n 2 38 U n 2 39 C n 2 40 U n 2 41 G n 2 42 G n 2 43 A n 2 44 U n 2 45 G n 2 46 A n 2 47 G n 2 48 A n 2 49 G n 2 50 A n 2 51 A n 2 52 G n 2 53 A n 2 54 U n 2 55 U n 2 56 C n 2 57 G n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'FUSOBACTERIUM NUCLEATUM SUBSP. NUCLEATUM' ? 190304 ? 2 1 sample ? ? 'FUSOBACTERIUM NUCLEATUM SUBSP. NUCLEATUM' ? 190304 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 GB AE009951 1 ? ? 20095250 ? 2 GB AE009951 2 ? ? 20095250 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2YIF X 3 ? 52 ? 20095250 2495 ? 2544 ? 3 52 2 2 2YIF Z 2 ? 53 ? 20095250 2550 ? 2601 ? 58 109 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YIF GTP X 1 ? GB 20095250 ? ? 'expression tag' 1 1 1 2YIF G X 2 ? GB 20095250 ? ? 'expression tag' 2 2 1 2YIF U X 50 ? GB 20095250 A 2542 'engineered mutation' 50 3 1 2YIF C X 51 ? GB 20095250 G 2543 'engineered mutation' 51 4 1 2YIF C X 52 ? GB 20095250 U 2544 'engineered mutation' 52 5 1 2YIF A X 53 ? GB 20095250 ? ? 'expression tag' 53 6 1 2YIF U X 54 ? GB 20095250 ? ? 'expression tag' 54 7 2 2YIF GTP Z 1 ? GB 20095250 ? ? 'expression tag' 57 8 2 2YIF G Z 2 ? GB 20095250 C 2550 'engineered mutation' 58 9 2 2YIF A Z 3 ? GB 20095250 U 2551 'engineered mutation' 59 10 2 2YIF U Z 54 ? GB 20095250 ? ? 'expression tag' 110 11 2 2YIF U Z 55 ? GB 20095250 ? ? 'expression tag' 111 12 2 2YIF C Z 56 ? GB 20095250 ? ? 'expression tag' 112 13 2 2YIF G Z 57 ? GB 20095250 ? ? 'expression tag' 113 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 2YIF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.91 _exptl_crystal.density_percent_sol 64.3 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'RNA WAS CRYSTALLIZED FROM 11% PEG-4000, 0.32 M MGCL2, AND 0.01 M TRIS-CL, PH 8.4' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2009-04-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength 0.9795 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2YIF _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.00 _reflns.d_resolution_high 3.30 _reflns.number_obs 6627 _reflns.number_all ? _reflns.percent_possible_obs 98.1 _reflns.pdbx_Rmerge_I_obs 0.09 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22.90 _reflns.B_iso_Wilson_estimate 113.49 _reflns.pdbx_redundancy 5.9 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 3.30 _reflns_shell.d_res_low 3.42 _reflns_shell.percent_possible_all 90.1 _reflns_shell.Rmerge_I_obs 0.48 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.80 _reflns_shell.pdbx_redundancy 4.0 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2YIF _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 6383 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.844 _refine.ls_d_res_high 3.298 _refine.ls_percent_reflns_obs 94.52 _refine.ls_R_factor_obs 0.2087 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2058 _refine.ls_R_factor_R_free 0.2572 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.6 _refine.ls_number_reflns_R_free 356 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 132.3 _refine.aniso_B[1][1] -5.4284 _refine.aniso_B[2][2] -5.4284 _refine.aniso_B[3][3] 9.2468 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.233 _refine.solvent_model_param_bsol 60.00 _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.83 _refine.pdbx_ls_cross_valid_method ? _refine.details 'U54 AND PHOSPHATE GROUPS OF THE GTP IN CHAINS X, Z ARE DISORDERED' _refine.pdbx_starting_model 'PDB ENTRY 3F2Q' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.37 _refine.pdbx_overall_phase_error 26.19 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2374 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 26 _refine_hist.number_atoms_total 2414 _refine_hist.d_res_high 3.298 _refine_hist.d_res_low 29.844 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.002 ? ? 2683 'X-RAY DIFFRACTION' ? f_angle_d 0.517 ? ? 4201 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.898 ? ? 1350 'X-RAY DIFFRACTION' ? f_chiral_restr 0.053 ? ? 540 'X-RAY DIFFRACTION' ? f_plane_restr 0.036 ? ? 114 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 3.2980 4.1534 2799 0.2637 90.00 0.2984 . . 169 . . 'X-RAY DIFFRACTION' . 4.1534 29.8455 3228 0.1887 99.00 0.2442 . . 187 . . # _struct.entry_id 2YIF _struct.title 'Crystal structure of a F. nucleatum FMN riboswitch - Free state' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YIF _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, TRANSLATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 4 ? Q N N 5 ? R N N 5 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? X GTP 1 X G 2 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale2 covale both ? B GTP 1 "O3'" ? ? ? 1_555 B G 2 P ? ? Z GTP 57 Z G 58 1_555 ? ? ? ? ? ? ? 1.607 ? ? metalc1 metalc ? ? A A 14 OP2 ? ? ? 1_555 C MG . MG ? ? X A 14 X MG 1054 1_555 ? ? ? ? ? ? ? 2.604 ? ? metalc2 metalc ? ? A G 28 O6 ? ? ? 1_555 D MG . MG ? ? X G 28 X MG 1055 1_555 ? ? ? ? ? ? ? 2.615 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 Q HOH . O ? ? X MG 1054 X HOH 2003 1_555 ? ? ? ? ? ? ? 1.846 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 Q HOH . O ? ? X MG 1054 X HOH 2004 1_555 ? ? ? ? ? ? ? 1.841 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 Q HOH . O ? ? X MG 1054 X HOH 2005 1_555 ? ? ? ? ? ? ? 1.845 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 Q HOH . O ? ? X MG 1054 X HOH 2006 1_555 ? ? ? ? ? ? ? 1.844 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 Q HOH . O ? ? X MG 1054 X HOH 2007 1_555 ? ? ? ? ? ? ? 1.851 ? ? metalc8 metalc ? ? Q HOH . O ? ? ? 1_555 K MG . MG ? ? X HOH 2001 Z MG 1116 1_555 ? ? ? ? ? ? ? 1.841 ? ? metalc9 metalc ? ? Q HOH . O ? ? ? 1_555 K MG . MG ? ? X HOH 2002 Z MG 1116 1_555 ? ? ? ? ? ? ? 1.843 ? ? metalc10 metalc ? ? B U 33 O4 ? ? ? 1_555 J MG . MG ? ? Z U 89 Z MG 1115 1_555 ? ? ? ? ? ? ? 2.575 ? ? metalc11 metalc ? ? B A 36 OP2 ? ? ? 1_555 J MG . MG ? ? Z A 92 Z MG 1115 1_555 ? ? ? ? ? ? ? 2.437 ? ? metalc12 metalc ? ? J MG . MG ? ? ? 1_555 R HOH . O ? ? Z MG 1115 Z HOH 2006 1_555 ? ? ? ? ? ? ? 1.850 ? ? metalc13 metalc ? ? J MG . MG ? ? ? 1_555 R HOH . O ? ? Z MG 1115 Z HOH 2007 1_555 ? ? ? ? ? ? ? 1.889 ? ? metalc14 metalc ? ? J MG . MG ? ? ? 1_555 R HOH . O ? ? Z MG 1115 Z HOH 2011 1_555 ? ? ? ? ? ? ? 1.854 ? ? metalc15 metalc ? ? J MG . MG ? ? ? 1_555 R HOH . O ? ? Z MG 1115 Z HOH 2012 1_555 ? ? ? ? ? ? ? 1.866 ? ? metalc16 metalc ? ? K MG . MG ? ? ? 1_555 R HOH . O ? ? Z MG 1116 Z HOH 2013 1_555 ? ? ? ? ? ? ? 1.848 ? ? metalc17 metalc ? ? K MG . MG ? ? ? 1_555 R HOH . O ? ? Z MG 1116 Z HOH 2014 1_555 ? ? ? ? ? ? ? 1.846 ? ? metalc18 metalc ? ? K MG . MG ? ? ? 1_555 R HOH . O ? ? Z MG 1116 Z HOH 2015 1_555 ? ? ? ? ? ? ? 1.846 ? ? metalc19 metalc ? ? N MG . MG ? ? ? 1_555 R HOH . O ? ? Z MG 1119 Z HOH 2008 1_555 ? ? ? ? ? ? ? 1.850 ? ? metalc20 metalc ? ? N MG . MG ? ? ? 1_555 R HOH . O ? ? Z MG 1119 Z HOH 2009 1_555 ? ? ? ? ? ? ? 1.837 ? ? metalc21 metalc ? ? N MG . MG ? ? ? 1_555 R HOH . O ? ? Z MG 1119 Z HOH 2010 1_555 ? ? ? ? ? ? ? 1.845 ? ? metalc22 metalc ? ? N MG . MG ? ? ? 1_555 R HOH . O ? ? Z MG 1119 Z HOH 2016 1_555 ? ? ? ? ? ? ? 1.850 ? ? metalc23 metalc ? ? N MG . MG ? ? ? 1_555 R HOH . O ? ? Z MG 1119 Z HOH 2017 1_555 ? ? ? ? ? ? ? 1.842 ? ? metalc24 metalc ? ? N MG . MG ? ? ? 1_555 R HOH . O ? ? Z MG 1119 Z HOH 2018 1_555 ? ? ? ? ? ? ? 1.836 ? ? metalc25 metalc ? ? O MG . MG ? ? ? 1_555 R HOH . O ? ? Z MG 1120 Z HOH 2001 1_555 ? ? ? ? ? ? ? 1.837 ? ? metalc26 metalc ? ? O MG . MG ? ? ? 1_555 R HOH . O ? ? Z MG 1120 Z HOH 2002 1_555 ? ? ? ? ? ? ? 1.849 ? ? metalc27 metalc ? ? O MG . MG ? ? ? 1_555 R HOH . O ? ? Z MG 1120 Z HOH 2003 1_555 ? ? ? ? ? ? ? 1.845 ? ? metalc28 metalc ? ? O MG . MG ? ? ? 1_555 R HOH . O ? ? Z MG 1120 Z HOH 2004 1_555 ? ? ? ? ? ? ? 1.848 ? ? metalc29 metalc ? ? O MG . MG ? ? ? 1_555 R HOH . O ? ? Z MG 1120 Z HOH 2005 1_555 ? ? ? ? ? ? ? 1.836 ? ? metalc30 metalc ? ? O MG . MG ? ? ? 1_555 R HOH . O ? ? Z MG 1120 Z HOH 2019 1_555 ? ? ? ? ? ? ? 1.841 ? ? hydrog1 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 B C 56 N3 ? ? X GTP 1 Z C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A GTP 1 N2 ? ? ? 1_555 B C 56 O2 ? ? X GTP 1 Z C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A GTP 1 O6 ? ? ? 1_555 B C 56 N4 ? ? X GTP 1 Z C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B U 55 O2 ? ? X G 2 Z U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 B U 55 N3 ? ? X G 2 Z U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 54 N3 ? ? X A 3 Z U 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 54 O4 ? ? X A 3 Z U 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 4 N3 ? ? ? 1_555 B A 53 N1 ? ? X U 4 Z A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 4 O4 ? ? ? 1_555 B A 53 N6 ? ? X U 4 Z A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 52 N1 ? ? X C 5 Z G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 52 O6 ? ? X C 5 Z G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 52 N2 ? ? X C 5 Z G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 51 N1 ? ? X U 6 Z A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 51 N6 ? ? X U 6 Z A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 50 N1 ? ? X U 7 Z A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 50 N6 ? ? X U 7 Z A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 51 N1 ? ? X U 7 Z A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 51 N6 ? ? X U 7 Z A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 49 N1 ? ? X C 8 Z G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 49 O6 ? ? X C 8 Z G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 49 N2 ? ? X C 8 Z G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 47 N2 ? ? X G 10 X G 47 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog23 hydrog ? ? A G 10 N7 ? ? ? 1_555 B G 47 N2 ? ? X G 10 Z G 103 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog24 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 31 O2 ? ? X G 11 X C 31 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog25 hydrog ? ? A G 12 N2 ? ? ? 1_555 B G 37 N3 ? ? X G 12 Z G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog26 hydrog ? ? A G 12 N3 ? ? ? 1_555 B G 37 N2 ? ? X G 12 Z G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog27 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 28 N1 ? ? X C 13 X G 28 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog28 hydrog ? ? A A 14 N6 ? ? ? 1_555 A G 28 N3 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog29 hydrog ? ? A A 14 N7 ? ? ? 1_555 A G 28 N2 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog30 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 26 N3 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 26 O2 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 26 N4 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 22 N7 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog40 hydrog ? ? A U 18 O2 ? ? ? 1_555 A A 22 N6 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog41 hydrog ? ? A U 24 N3 ? ? ? 1_555 B U 33 O2 ? ? X U 24 Z U 89 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog42 hydrog ? ? A U 24 O2 ? ? ? 1_555 B U 33 N3 ? ? X U 24 Z U 89 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog43 hydrog ? ? A A 29 N1 ? ? ? 1_555 B U 38 N3 ? ? X A 29 Z U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A A 29 N6 ? ? ? 1_555 B U 38 O4 ? ? X A 29 Z U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 30 N3 ? ? ? 1_555 B G 37 N1 ? ? X C 30 Z G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 30 N4 ? ? ? 1_555 B G 37 O6 ? ? X C 30 Z G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 30 O2 ? ? ? 1_555 B G 37 N2 ? ? X C 30 Z G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 31 N3 ? ? ? 1_555 B G 28 N1 ? ? X C 31 Z G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 31 N4 ? ? ? 1_555 B G 28 O6 ? ? X C 31 Z G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 31 O2 ? ? ? 1_555 B G 28 N2 ? ? X C 31 Z G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 32 N1 ? ? ? 1_555 B C 27 N3 ? ? X G 32 Z C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 32 N2 ? ? ? 1_555 B C 27 O2 ? ? X G 32 Z C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 32 O6 ? ? ? 1_555 B C 27 N4 ? ? X G 32 Z C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 46 N3 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 46 O2 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 46 N4 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 33 N2 ? ? ? 1_555 B A 48 N3 ? ? X G 33 Z A 104 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog58 hydrog ? ? A U 34 N3 ? ? ? 1_555 A A 45 N1 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 34 O4 ? ? ? 1_555 A A 45 N6 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 44 N3 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 44 O2 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 44 N4 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 43 N3 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 43 O2 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 43 N4 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 40 N7 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog67 hydrog ? ? A U 37 O2 ? ? ? 1_555 A A 40 N6 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog68 hydrog ? ? A A 38 N6 ? ? ? 1_555 B G 14 N3 ? ? X A 38 Z G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog69 hydrog ? ? A A 38 N7 ? ? ? 1_555 B G 14 N2 ? ? X A 38 Z G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog70 hydrog ? ? A G 41 N2 ? ? ? 1_555 B A 7 N3 ? ? X G 41 Z A 63 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog71 hydrog ? ? A G 41 N1 ? ? ? 1_555 B C 26 N3 ? ? X G 41 Z C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 41 N2 ? ? ? 1_555 B C 26 O2 ? ? X G 41 Z C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 41 O6 ? ? ? 1_555 B C 26 N4 ? ? X G 41 Z C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A U 42 N3 ? ? ? 1_555 B A 25 N1 ? ? X U 42 Z A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A U 42 O4 ? ? ? 1_555 B A 25 N6 ? ? X U 42 Z A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A A 48 N6 ? ? ? 1_555 B U 5 O2 ? ? X A 48 Z U 61 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog77 hydrog ? ? A A 49 N1 ? ? ? 1_555 B U 4 N3 ? ? X A 49 Z U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A A 49 N6 ? ? ? 1_555 B U 4 O4 ? ? X A 49 Z U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A U 50 N3 ? ? ? 1_555 B A 3 N1 ? ? X U 50 Z A 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A U 50 O4 ? ? ? 1_555 B A 3 N6 ? ? X U 50 Z A 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A C 51 N4 ? ? ? 1_555 B G 2 O6 ? ? X C 51 Z G 58 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog82 hydrog ? ? A C 51 N4 ? ? ? 1_555 B A 3 N1 ? ? X C 51 Z A 59 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog83 hydrog ? ? A C 52 N3 ? ? ? 1_555 B GTP 1 N1 ? ? X C 52 Z GTP 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 52 N4 ? ? ? 1_555 B GTP 1 O6 ? ? X C 52 Z GTP 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A C 52 O2 ? ? ? 1_555 B GTP 1 N2 ? ? X C 52 Z GTP 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 27 O2 ? ? Z G 62 Z C 83 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog87 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 24 N1 ? ? Z U 64 Z A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 24 N6 ? ? Z U 64 Z A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 23 N1 ? ? Z U 65 Z A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 23 N6 ? ? Z U 65 Z A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 22 N1 ? ? Z U 66 Z A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 22 N6 ? ? Z U 66 Z A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B G 11 N1 ? ? ? 1_555 B C 21 N3 ? ? Z G 67 Z C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B G 11 N2 ? ? ? 1_555 B C 21 O2 ? ? Z G 67 Z C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B G 11 O6 ? ? ? 1_555 B C 21 N4 ? ? Z G 67 Z C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 20 N3 ? ? Z G 68 Z C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 20 O2 ? ? Z G 68 Z C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 20 N4 ? ? Z G 68 Z C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B U 13 N3 ? ? ? 1_555 B A 17 N7 ? ? Z U 69 Z A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog100 hydrog ? ? B U 13 O2 ? ? ? 1_555 B A 17 N6 ? ? Z U 69 Z A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog101 hydrog ? ? B A 29 N1 ? ? ? 1_555 B G 42 N1 ? ? Z A 85 Z G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog102 hydrog ? ? B A 29 N6 ? ? ? 1_555 B G 42 O6 ? ? Z A 85 Z G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog103 hydrog ? ? B C 30 N3 ? ? ? 1_555 B G 41 N1 ? ? Z C 86 Z G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B C 30 N4 ? ? ? 1_555 B G 41 O6 ? ? Z C 86 Z G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B C 30 O2 ? ? ? 1_555 B G 41 N2 ? ? Z C 86 Z G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B A 31 N1 ? ? ? 1_555 B U 40 N3 ? ? Z A 87 Z U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B A 31 N6 ? ? ? 1_555 B U 40 O4 ? ? Z A 87 Z U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B G 32 N1 ? ? ? 1_555 B C 39 N3 ? ? Z G 88 Z C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B G 32 N2 ? ? ? 1_555 B C 39 O2 ? ? Z G 88 Z C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B G 32 O6 ? ? ? 1_555 B C 39 N4 ? ? Z G 88 Z C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B U 33 N3 ? ? ? 1_555 B A 36 N7 ? ? Z U 89 Z A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog112 hydrog ? ? B U 33 O2 ? ? ? 1_555 B A 36 N6 ? ? Z U 89 Z A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X MG 1054 ? 6 'BINDING SITE FOR RESIDUE MG X 1054' AC2 Software X MG 1055 ? 1 'BINDING SITE FOR RESIDUE MG X 1055' AC3 Software X MG 1057 ? 1 'BINDING SITE FOR RESIDUE MG X 1057' AC4 Software Z MG 1114 ? 1 'BINDING SITE FOR RESIDUE MG Z 1114' AC5 Software Z MG 1115 ? 6 'BINDING SITE FOR RESIDUE MG Z 1115' AC6 Software Z MG 1116 ? 7 'BINDING SITE FOR RESIDUE MG Z 1116' AC7 Software Z MG 1117 ? 2 'BINDING SITE FOR RESIDUE MG Z 1117' AC8 Software Z MG 1119 ? 7 'BINDING SITE FOR RESIDUE MG Z 1119' AC9 Software Z MG 1120 ? 7 'BINDING SITE FOR RESIDUE MG Z 1120' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 A A 14 ? A X 14 . ? 1_555 ? 2 AC1 6 HOH Q . ? HOH X 2003 . ? 1_555 ? 3 AC1 6 HOH Q . ? HOH X 2004 . ? 1_555 ? 4 AC1 6 HOH Q . ? HOH X 2005 . ? 1_555 ? 5 AC1 6 HOH Q . ? HOH X 2006 . ? 1_555 ? 6 AC1 6 HOH Q . ? HOH X 2007 . ? 1_555 ? 7 AC2 1 G A 28 ? G X 28 . ? 1_555 ? 8 AC3 1 G A 16 ? G X 16 . ? 1_555 ? 9 AC4 1 G B 28 ? G Z 84 . ? 1_555 ? 10 AC5 6 U B 33 ? U Z 89 . ? 1_555 ? 11 AC5 6 A B 36 ? A Z 92 . ? 1_555 ? 12 AC5 6 HOH R . ? HOH Z 2006 . ? 1_555 ? 13 AC5 6 HOH R . ? HOH Z 2007 . ? 1_555 ? 14 AC5 6 HOH R . ? HOH Z 2011 . ? 1_555 ? 15 AC5 6 HOH R . ? HOH Z 2012 . ? 1_555 ? 16 AC6 7 G A 12 ? G X 12 . ? 1_555 ? 17 AC6 7 HOH Q . ? HOH X 2001 . ? 1_555 ? 18 AC6 7 HOH Q . ? HOH X 2002 . ? 1_555 ? 19 AC6 7 C B 39 ? C Z 95 . ? 1_555 ? 20 AC6 7 HOH R . ? HOH Z 2013 . ? 1_555 ? 21 AC6 7 HOH R . ? HOH Z 2014 . ? 1_555 ? 22 AC6 7 HOH R . ? HOH Z 2015 . ? 1_555 ? 23 AC7 2 G B 11 ? G Z 67 . ? 1_555 ? 24 AC7 2 G B 12 ? G Z 68 . ? 1_555 ? 25 AC8 7 G B 35 ? G Z 91 . ? 1_555 ? 26 AC8 7 HOH R . ? HOH Z 2008 . ? 1_555 ? 27 AC8 7 HOH R . ? HOH Z 2009 . ? 1_555 ? 28 AC8 7 HOH R . ? HOH Z 2010 . ? 1_555 ? 29 AC8 7 HOH R . ? HOH Z 2016 . ? 1_555 ? 30 AC8 7 HOH R . ? HOH Z 2017 . ? 1_555 ? 31 AC8 7 HOH R . ? HOH Z 2018 . ? 1_555 ? 32 AC9 7 G B 14 ? G Z 70 . ? 1_555 ? 33 AC9 7 HOH R . ? HOH Z 2001 . ? 1_555 ? 34 AC9 7 HOH R . ? HOH Z 2002 . ? 1_555 ? 35 AC9 7 HOH R . ? HOH Z 2003 . ? 1_555 ? 36 AC9 7 HOH R . ? HOH Z 2004 . ? 1_555 ? 37 AC9 7 HOH R . ? HOH Z 2005 . ? 1_555 ? 38 AC9 7 HOH R . ? HOH Z 2019 . ? 1_555 ? # _database_PDB_matrix.entry_id 2YIF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YIF _atom_sites.fract_transf_matrix[1][1] 0.013611 _atom_sites.fract_transf_matrix[1][2] 0.007858 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015716 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007398 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP X . n A 1 2 G 2 2 2 G G X . n A 1 3 A 3 3 3 A A X . n A 1 4 U 4 4 4 U U X . n A 1 5 C 5 5 5 C C X . n A 1 6 U 6 6 6 U U X . n A 1 7 U 7 7 7 U U X . n A 1 8 C 8 8 8 C C X . n A 1 9 G 9 9 9 G G X . n A 1 10 G 10 10 10 G G X . n A 1 11 G 11 11 11 G G X . n A 1 12 G 12 12 12 G G X . n A 1 13 C 13 13 13 C C X . n A 1 14 A 14 14 14 A A X . n A 1 15 G 15 15 15 G G X . n A 1 16 G 16 16 16 G G X . n A 1 17 G 17 17 17 G G X . n A 1 18 U 18 18 18 U U X . n A 1 19 G 19 19 19 G G X . n A 1 20 A 20 20 20 A A X . n A 1 21 A 21 21 21 A A X . n A 1 22 A 22 22 22 A A X . n A 1 23 U 23 23 23 U U X . n A 1 24 U 24 24 24 U U X . n A 1 25 C 25 25 25 C C X . n A 1 26 C 26 26 26 C C X . n A 1 27 C 27 27 27 C C X . n A 1 28 G 28 28 28 G G X . n A 1 29 A 29 29 29 A A X . n A 1 30 C 30 30 30 C C X . n A 1 31 C 31 31 31 C C X . n A 1 32 G 32 32 32 G G X . n A 1 33 G 33 33 33 G G X . n A 1 34 U 34 34 34 U U X . n A 1 35 G 35 35 35 G G X . n A 1 36 G 36 36 36 G G X . n A 1 37 U 37 37 37 U U X . n A 1 38 A 38 38 38 A A X . n A 1 39 U 39 39 39 U U X . n A 1 40 A 40 40 40 A A X . n A 1 41 G 41 41 41 G G X . n A 1 42 U 42 42 42 U U X . n A 1 43 C 43 43 43 C C X . n A 1 44 C 44 44 44 C C X . n A 1 45 A 45 45 45 A A X . n A 1 46 C 46 46 46 C C X . n A 1 47 G 47 47 47 G G X . n A 1 48 A 48 48 48 A A X . n A 1 49 A 49 49 49 A A X . n A 1 50 U 50 50 50 U U X . n A 1 51 C 51 51 51 C C X . n A 1 52 C 52 52 52 C C X . n A 1 53 A 53 53 53 A A X . n A 1 54 U 54 54 ? ? ? X . n B 2 1 GTP 1 57 57 GTP GTP Z . n B 2 2 G 2 58 58 G G Z . n B 2 3 A 3 59 59 A A Z . n B 2 4 U 4 60 60 U U Z . n B 2 5 U 5 61 61 U U Z . n B 2 6 G 6 62 62 G G Z . n B 2 7 A 7 63 63 A A Z . n B 2 8 U 8 64 64 U U Z . n B 2 9 U 9 65 65 U U Z . n B 2 10 U 10 66 66 U U Z . n B 2 11 G 11 67 67 G G Z . n B 2 12 G 12 68 68 G G Z . n B 2 13 U 13 69 69 U U Z . n B 2 14 G 14 70 70 G G Z . n B 2 15 A 15 71 71 A A Z . n B 2 16 A 16 72 72 A A Z . n B 2 17 A 17 73 73 A A Z . n B 2 18 U 18 74 74 U U Z . n B 2 19 U 19 75 75 U U Z . n B 2 20 C 20 76 76 C C Z . n B 2 21 C 21 77 77 C C Z . n B 2 22 A 22 78 78 A A Z . n B 2 23 A 23 79 79 A A Z . n B 2 24 A 24 80 80 A A Z . n B 2 25 A 25 81 81 A A Z . n B 2 26 C 26 82 82 C C Z . n B 2 27 C 27 83 83 C C Z . n B 2 28 G 28 84 84 G G Z . n B 2 29 A 29 85 85 A A Z . n B 2 30 C 30 86 86 C C Z . n B 2 31 A 31 87 87 A A Z . n B 2 32 G 32 88 88 G G Z . n B 2 33 U 33 89 89 U U Z . n B 2 34 A 34 90 90 A A Z . n B 2 35 G 35 91 91 G G Z . n B 2 36 A 36 92 92 A A Z . n B 2 37 G 37 93 93 G G Z . n B 2 38 U 38 94 94 U U Z . n B 2 39 C 39 95 95 C C Z . n B 2 40 U 40 96 96 U U Z . n B 2 41 G 41 97 97 G G Z . n B 2 42 G 42 98 98 G G Z . n B 2 43 A 43 99 99 A A Z . n B 2 44 U 44 100 100 U U Z . n B 2 45 G 45 101 101 G G Z . n B 2 46 A 46 102 102 A A Z . n B 2 47 G 47 103 103 G G Z . n B 2 48 A 48 104 104 A A Z . n B 2 49 G 49 105 105 G G Z . n B 2 50 A 50 106 106 A A Z . n B 2 51 A 51 107 107 A A Z . n B 2 52 G 52 108 108 G G Z . n B 2 53 A 53 109 109 A A Z . n B 2 54 U 54 110 110 U U Z . n B 2 55 U 55 111 111 U U Z . n B 2 56 C 56 112 112 C C Z . n B 2 57 G 57 113 113 G G Z . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 1054 1054 MG MG X . D 3 MG 1 1055 1055 MG MG X . E 4 K 1 1056 1056 K K X . F 3 MG 1 1057 1057 MG MG X . G 3 MG 1 1058 1058 MG MG X . H 3 MG 1 1059 1059 MG MG X . I 3 MG 1 1114 1114 MG MG Z . J 3 MG 1 1115 1115 MG MG Z . K 3 MG 1 1116 1116 MG MG Z . L 3 MG 1 1117 1117 MG MG Z . M 3 MG 1 1118 1118 MG MG Z . N 3 MG 1 1119 1119 MG MG Z . O 3 MG 1 1120 1120 MG MG Z . P 4 K 1 1121 1121 K K Z . Q 5 HOH 1 2001 2001 HOH HOH X . Q 5 HOH 2 2002 2002 HOH HOH X . Q 5 HOH 3 2003 2003 HOH HOH X . Q 5 HOH 4 2004 2004 HOH HOH X . Q 5 HOH 5 2005 2005 HOH HOH X . Q 5 HOH 6 2006 2006 HOH HOH X . Q 5 HOH 7 2007 2007 HOH HOH X . R 5 HOH 1 2001 2001 HOH HOH Z . R 5 HOH 2 2002 2002 HOH HOH Z . R 5 HOH 3 2003 2003 HOH HOH Z . R 5 HOH 4 2004 2004 HOH HOH Z . R 5 HOH 5 2005 2005 HOH HOH Z . R 5 HOH 6 2006 2006 HOH HOH Z . R 5 HOH 7 2007 2007 HOH HOH Z . R 5 HOH 8 2008 2008 HOH HOH Z . R 5 HOH 9 2009 2009 HOH HOH Z . R 5 HOH 10 2010 2010 HOH HOH Z . R 5 HOH 11 2011 2011 HOH HOH Z . R 5 HOH 12 2012 2012 HOH HOH Z . R 5 HOH 13 2013 2013 HOH HOH Z . R 5 HOH 14 2014 2014 HOH HOH Z . R 5 HOH 15 2015 2015 HOH HOH Z . R 5 HOH 16 2016 2016 HOH HOH Z . R 5 HOH 17 2017 2017 HOH HOH Z . R 5 HOH 18 2018 2018 HOH HOH Z . R 5 HOH 19 2019 2019 HOH HOH Z . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GTP 1 X GTP 1 ? G "GUANOSINE-5'-TRIPHOSPHATE" 2 B GTP 1 Z GTP 57 ? G "GUANOSINE-5'-TRIPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7440 ? 1 MORE -83.0 ? 1 'SSA (A^2)' 16680 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A A 14 ? X A 14 ? 1_555 MG ? C MG . ? X MG 1054 ? 1_555 O ? Q HOH . ? X HOH 2003 ? 1_555 86.2 ? 2 OP2 ? A A 14 ? X A 14 ? 1_555 MG ? C MG . ? X MG 1054 ? 1_555 O ? Q HOH . ? X HOH 2004 ? 1_555 82.2 ? 3 O ? Q HOH . ? X HOH 2003 ? 1_555 MG ? C MG . ? X MG 1054 ? 1_555 O ? Q HOH . ? X HOH 2004 ? 1_555 91.1 ? 4 OP2 ? A A 14 ? X A 14 ? 1_555 MG ? C MG . ? X MG 1054 ? 1_555 O ? Q HOH . ? X HOH 2005 ? 1_555 97.7 ? 5 O ? Q HOH . ? X HOH 2003 ? 1_555 MG ? C MG . ? X MG 1054 ? 1_555 O ? Q HOH . ? X HOH 2005 ? 1_555 88.9 ? 6 O ? Q HOH . ? X HOH 2004 ? 1_555 MG ? C MG . ? X MG 1054 ? 1_555 O ? Q HOH . ? X HOH 2005 ? 1_555 179.9 ? 7 OP2 ? A A 14 ? X A 14 ? 1_555 MG ? C MG . ? X MG 1054 ? 1_555 O ? Q HOH . ? X HOH 2006 ? 1_555 93.7 ? 8 O ? Q HOH . ? X HOH 2003 ? 1_555 MG ? C MG . ? X MG 1054 ? 1_555 O ? Q HOH . ? X HOH 2006 ? 1_555 179.9 ? 9 O ? Q HOH . ? X HOH 2004 ? 1_555 MG ? C MG . ? X MG 1054 ? 1_555 O ? Q HOH . ? X HOH 2006 ? 1_555 88.9 ? 10 O ? Q HOH . ? X HOH 2005 ? 1_555 MG ? C MG . ? X MG 1054 ? 1_555 O ? Q HOH . ? X HOH 2006 ? 1_555 91.1 ? 11 OP2 ? A A 14 ? X A 14 ? 1_555 MG ? C MG . ? X MG 1054 ? 1_555 O ? Q HOH . ? X HOH 2007 ? 1_555 171.0 ? 12 O ? Q HOH . ? X HOH 2003 ? 1_555 MG ? C MG . ? X MG 1054 ? 1_555 O ? Q HOH . ? X HOH 2007 ? 1_555 89.9 ? 13 O ? Q HOH . ? X HOH 2004 ? 1_555 MG ? C MG . ? X MG 1054 ? 1_555 O ? Q HOH . ? X HOH 2007 ? 1_555 89.7 ? 14 O ? Q HOH . ? X HOH 2005 ? 1_555 MG ? C MG . ? X MG 1054 ? 1_555 O ? Q HOH . ? X HOH 2007 ? 1_555 90.4 ? 15 O ? Q HOH . ? X HOH 2006 ? 1_555 MG ? C MG . ? X MG 1054 ? 1_555 O ? Q HOH . ? X HOH 2007 ? 1_555 90.1 ? 16 O ? Q HOH . ? X HOH 2001 ? 1_555 MG ? K MG . ? Z MG 1116 ? 1_555 O ? Q HOH . ? X HOH 2002 ? 1_555 89.5 ? 17 O ? Q HOH . ? X HOH 2001 ? 1_555 MG ? K MG . ? Z MG 1116 ? 1_555 O ? R HOH . ? Z HOH 2013 ? 1_555 90.5 ? 18 O ? Q HOH . ? X HOH 2002 ? 1_555 MG ? K MG . ? Z MG 1116 ? 1_555 O ? R HOH . ? Z HOH 2013 ? 1_555 179.9 ? 19 O ? Q HOH . ? X HOH 2001 ? 1_555 MG ? K MG . ? Z MG 1116 ? 1_555 O ? R HOH . ? Z HOH 2014 ? 1_555 179.9 ? 20 O ? Q HOH . ? X HOH 2002 ? 1_555 MG ? K MG . ? Z MG 1116 ? 1_555 O ? R HOH . ? Z HOH 2014 ? 1_555 90.5 ? 21 O ? R HOH . ? Z HOH 2013 ? 1_555 MG ? K MG . ? Z MG 1116 ? 1_555 O ? R HOH . ? Z HOH 2014 ? 1_555 89.6 ? 22 O ? Q HOH . ? X HOH 2001 ? 1_555 MG ? K MG . ? Z MG 1116 ? 1_555 O ? R HOH . ? Z HOH 2015 ? 1_555 89.7 ? 23 O ? Q HOH . ? X HOH 2002 ? 1_555 MG ? K MG . ? Z MG 1116 ? 1_555 O ? R HOH . ? Z HOH 2015 ? 1_555 89.3 ? 24 O ? R HOH . ? Z HOH 2013 ? 1_555 MG ? K MG . ? Z MG 1116 ? 1_555 O ? R HOH . ? Z HOH 2015 ? 1_555 90.6 ? 25 O ? R HOH . ? Z HOH 2014 ? 1_555 MG ? K MG . ? Z MG 1116 ? 1_555 O ? R HOH . ? Z HOH 2015 ? 1_555 90.4 ? 26 O4 ? B U 33 ? Z U 89 ? 1_555 MG ? J MG . ? Z MG 1115 ? 1_555 OP2 ? B A 36 ? Z A 92 ? 1_555 83.6 ? 27 O4 ? B U 33 ? Z U 89 ? 1_555 MG ? J MG . ? Z MG 1115 ? 1_555 O ? R HOH . ? Z HOH 2006 ? 1_555 67.1 ? 28 OP2 ? B A 36 ? Z A 92 ? 1_555 MG ? J MG . ? Z MG 1115 ? 1_555 O ? R HOH . ? Z HOH 2006 ? 1_555 98.9 ? 29 O4 ? B U 33 ? Z U 89 ? 1_555 MG ? J MG . ? Z MG 1115 ? 1_555 O ? R HOH . ? Z HOH 2007 ? 1_555 88.3 ? 30 OP2 ? B A 36 ? Z A 92 ? 1_555 MG ? J MG . ? Z MG 1115 ? 1_555 O ? R HOH . ? Z HOH 2007 ? 1_555 162.3 ? 31 O ? R HOH . ? Z HOH 2006 ? 1_555 MG ? J MG . ? Z MG 1115 ? 1_555 O ? R HOH . ? Z HOH 2007 ? 1_555 92.5 ? 32 O4 ? B U 33 ? Z U 89 ? 1_555 MG ? J MG . ? Z MG 1115 ? 1_555 O ? R HOH . ? Z HOH 2011 ? 1_555 111.3 ? 33 OP2 ? B A 36 ? Z A 92 ? 1_555 MG ? J MG . ? Z MG 1115 ? 1_555 O ? R HOH . ? Z HOH 2011 ? 1_555 78.9 ? 34 O ? R HOH . ? Z HOH 2006 ? 1_555 MG ? J MG . ? Z MG 1115 ? 1_555 O ? R HOH . ? Z HOH 2011 ? 1_555 177.5 ? 35 O ? R HOH . ? Z HOH 2007 ? 1_555 MG ? J MG . ? Z MG 1115 ? 1_555 O ? R HOH . ? Z HOH 2011 ? 1_555 89.4 ? 36 O4 ? B U 33 ? Z U 89 ? 1_555 MG ? J MG . ? Z MG 1115 ? 1_555 O ? R HOH . ? Z HOH 2012 ? 1_555 156.6 ? 37 OP2 ? B A 36 ? Z A 92 ? 1_555 MG ? J MG . ? Z MG 1115 ? 1_555 O ? R HOH . ? Z HOH 2012 ? 1_555 102.9 ? 38 O ? R HOH . ? Z HOH 2006 ? 1_555 MG ? J MG . ? Z MG 1115 ? 1_555 O ? R HOH . ? Z HOH 2012 ? 1_555 89.6 ? 39 O ? R HOH . ? Z HOH 2007 ? 1_555 MG ? J MG . ? Z MG 1115 ? 1_555 O ? R HOH . ? Z HOH 2012 ? 1_555 90.7 ? 40 O ? R HOH . ? Z HOH 2011 ? 1_555 MG ? J MG . ? Z MG 1115 ? 1_555 O ? R HOH . ? Z HOH 2012 ? 1_555 92.0 ? 41 O ? R HOH . ? Z HOH 2008 ? 1_555 MG ? N MG . ? Z MG 1119 ? 1_555 O ? R HOH . ? Z HOH 2009 ? 1_555 90.6 ? 42 O ? R HOH . ? Z HOH 2008 ? 1_555 MG ? N MG . ? Z MG 1119 ? 1_555 O ? R HOH . ? Z HOH 2010 ? 1_555 90.1 ? 43 O ? R HOH . ? Z HOH 2009 ? 1_555 MG ? N MG . ? Z MG 1119 ? 1_555 O ? R HOH . ? Z HOH 2010 ? 1_555 91.2 ? 44 O ? R HOH . ? Z HOH 2008 ? 1_555 MG ? N MG . ? Z MG 1119 ? 1_555 O ? R HOH . ? Z HOH 2016 ? 1_555 179.9 ? 45 O ? R HOH . ? Z HOH 2009 ? 1_555 MG ? N MG . ? Z MG 1119 ? 1_555 O ? R HOH . ? Z HOH 2016 ? 1_555 89.3 ? 46 O ? R HOH . ? Z HOH 2010 ? 1_555 MG ? N MG . ? Z MG 1119 ? 1_555 O ? R HOH . ? Z HOH 2016 ? 1_555 89.8 ? 47 O ? R HOH . ? Z HOH 2008 ? 1_555 MG ? N MG . ? Z MG 1119 ? 1_555 O ? R HOH . ? Z HOH 2017 ? 1_555 89.4 ? 48 O ? R HOH . ? Z HOH 2009 ? 1_555 MG ? N MG . ? Z MG 1119 ? 1_555 O ? R HOH . ? Z HOH 2017 ? 1_555 179.9 ? 49 O ? R HOH . ? Z HOH 2010 ? 1_555 MG ? N MG . ? Z MG 1119 ? 1_555 O ? R HOH . ? Z HOH 2017 ? 1_555 88.8 ? 50 O ? R HOH . ? Z HOH 2016 ? 1_555 MG ? N MG . ? Z MG 1119 ? 1_555 O ? R HOH . ? Z HOH 2017 ? 1_555 90.7 ? 51 O ? R HOH . ? Z HOH 2008 ? 1_555 MG ? N MG . ? Z MG 1119 ? 1_555 O ? R HOH . ? Z HOH 2018 ? 1_555 90.0 ? 52 O ? R HOH . ? Z HOH 2009 ? 1_555 MG ? N MG . ? Z MG 1119 ? 1_555 O ? R HOH . ? Z HOH 2018 ? 1_555 88.9 ? 53 O ? R HOH . ? Z HOH 2010 ? 1_555 MG ? N MG . ? Z MG 1119 ? 1_555 O ? R HOH . ? Z HOH 2018 ? 1_555 179.9 ? 54 O ? R HOH . ? Z HOH 2016 ? 1_555 MG ? N MG . ? Z MG 1119 ? 1_555 O ? R HOH . ? Z HOH 2018 ? 1_555 90.1 ? 55 O ? R HOH . ? Z HOH 2017 ? 1_555 MG ? N MG . ? Z MG 1119 ? 1_555 O ? R HOH . ? Z HOH 2018 ? 1_555 91.1 ? 56 O ? R HOH . ? Z HOH 2001 ? 1_555 MG ? O MG . ? Z MG 1120 ? 1_555 O ? R HOH . ? Z HOH 2002 ? 1_555 89.2 ? 57 O ? R HOH . ? Z HOH 2001 ? 1_555 MG ? O MG . ? Z MG 1120 ? 1_555 O ? R HOH . ? Z HOH 2003 ? 1_555 90.7 ? 58 O ? R HOH . ? Z HOH 2002 ? 1_555 MG ? O MG . ? Z MG 1120 ? 1_555 O ? R HOH . ? Z HOH 2003 ? 1_555 90.0 ? 59 O ? R HOH . ? Z HOH 2001 ? 1_555 MG ? O MG . ? Z MG 1120 ? 1_555 O ? R HOH . ? Z HOH 2004 ? 1_555 90.8 ? 60 O ? R HOH . ? Z HOH 2002 ? 1_555 MG ? O MG . ? Z MG 1120 ? 1_555 O ? R HOH . ? Z HOH 2004 ? 1_555 180.0 ? 61 O ? R HOH . ? Z HOH 2003 ? 1_555 MG ? O MG . ? Z MG 1120 ? 1_555 O ? R HOH . ? Z HOH 2004 ? 1_555 90.0 ? 62 O ? R HOH . ? Z HOH 2001 ? 1_555 MG ? O MG . ? Z MG 1120 ? 1_555 O ? R HOH . ? Z HOH 2005 ? 1_555 89.3 ? 63 O ? R HOH . ? Z HOH 2002 ? 1_555 MG ? O MG . ? Z MG 1120 ? 1_555 O ? R HOH . ? Z HOH 2005 ? 1_555 90.0 ? 64 O ? R HOH . ? Z HOH 2003 ? 1_555 MG ? O MG . ? Z MG 1120 ? 1_555 O ? R HOH . ? Z HOH 2005 ? 1_555 180.0 ? 65 O ? R HOH . ? Z HOH 2004 ? 1_555 MG ? O MG . ? Z MG 1120 ? 1_555 O ? R HOH . ? Z HOH 2005 ? 1_555 90.0 ? 66 O ? R HOH . ? Z HOH 2001 ? 1_555 MG ? O MG . ? Z MG 1120 ? 1_555 O ? R HOH . ? Z HOH 2019 ? 1_555 180.0 ? 67 O ? R HOH . ? Z HOH 2002 ? 1_555 MG ? O MG . ? Z MG 1120 ? 1_555 O ? R HOH . ? Z HOH 2019 ? 1_555 90.8 ? 68 O ? R HOH . ? Z HOH 2003 ? 1_555 MG ? O MG . ? Z MG 1120 ? 1_555 O ? R HOH . ? Z HOH 2019 ? 1_555 89.3 ? 69 O ? R HOH . ? Z HOH 2004 ? 1_555 MG ? O MG . ? Z MG 1120 ? 1_555 O ? R HOH . ? Z HOH 2019 ? 1_555 89.2 ? 70 O ? R HOH . ? Z HOH 2005 ? 1_555 MG ? O MG . ? Z MG 1120 ? 1_555 O ? R HOH . ? Z HOH 2019 ? 1_555 90.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-08-31 2 'Structure model' 1 1 2011-11-09 3 'Structure model' 1 2 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_sf' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.value' 21 3 'Structure model' '_struct_conn.conn_type_id' 22 3 'Structure model' '_struct_conn.id' 23 3 'Structure model' '_struct_conn.pdbx_dist_value' 24 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 25 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 39 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 40 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 41 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 HKL-2000 'data scaling' . ? 2 CNS phasing . ? 3 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 X GTP 1 ? PG ? A GTP 1 PG 2 1 Y 1 X GTP 1 ? O1G ? A GTP 1 O1G 3 1 Y 1 X GTP 1 ? O2G ? A GTP 1 O2G 4 1 Y 1 X GTP 1 ? O3G ? A GTP 1 O3G 5 1 Y 1 Z GTP 57 ? PG ? B GTP 1 PG 6 1 Y 1 Z GTP 57 ? O1G ? B GTP 1 O1G 7 1 Y 1 Z GTP 57 ? O2G ? B GTP 1 O2G 8 1 Y 1 Z GTP 57 ? O3G ? B GTP 1 O3G # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id X _pdbx_unobs_or_zero_occ_residues.auth_comp_id U _pdbx_unobs_or_zero_occ_residues.auth_seq_id 54 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id U _pdbx_unobs_or_zero_occ_residues.label_seq_id 54 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GTP PG P N N 111 GTP O1G O N N 112 GTP O2G O N N 113 GTP O3G O N N 114 GTP O3B O N N 115 GTP PB P N N 116 GTP O1B O N N 117 GTP O2B O N N 118 GTP O3A O N N 119 GTP PA P N N 120 GTP O1A O N N 121 GTP O2A O N N 122 GTP "O5'" O N N 123 GTP "C5'" C N N 124 GTP "C4'" C N R 125 GTP "O4'" O N N 126 GTP "C3'" C N S 127 GTP "O3'" O N N 128 GTP "C2'" C N R 129 GTP "O2'" O N N 130 GTP "C1'" C N R 131 GTP N9 N Y N 132 GTP C8 C Y N 133 GTP N7 N Y N 134 GTP C5 C Y N 135 GTP C6 C N N 136 GTP O6 O N N 137 GTP N1 N N N 138 GTP C2 C N N 139 GTP N2 N N N 140 GTP N3 N N N 141 GTP C4 C Y N 142 GTP HOG2 H N N 143 GTP HOG3 H N N 144 GTP HOB2 H N N 145 GTP HOA2 H N N 146 GTP "H5'" H N N 147 GTP "H5''" H N N 148 GTP "H4'" H N N 149 GTP "H3'" H N N 150 GTP "HO3'" H N N 151 GTP "H2'" H N N 152 GTP "HO2'" H N N 153 GTP "H1'" H N N 154 GTP H8 H N N 155 GTP HN1 H N N 156 GTP HN21 H N N 157 GTP HN22 H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 K K K N N 162 MG MG MG N N 163 U OP3 O N N 164 U P P N N 165 U OP1 O N N 166 U OP2 O N N 167 U "O5'" O N N 168 U "C5'" C N N 169 U "C4'" C N R 170 U "O4'" O N N 171 U "C3'" C N S 172 U "O3'" O N N 173 U "C2'" C N R 174 U "O2'" O N N 175 U "C1'" C N R 176 U N1 N N N 177 U C2 C N N 178 U O2 O N N 179 U N3 N N N 180 U C4 C N N 181 U O4 O N N 182 U C5 C N N 183 U C6 C N N 184 U HOP3 H N N 185 U HOP2 H N N 186 U "H5'" H N N 187 U "H5''" H N N 188 U "H4'" H N N 189 U "H3'" H N N 190 U "HO3'" H N N 191 U "H2'" H N N 192 U "HO2'" H N N 193 U "H1'" H N N 194 U H3 H N N 195 U H5 H N N 196 U H6 H N N 197 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GTP PG O1G doub N N 116 GTP PG O2G sing N N 117 GTP PG O3G sing N N 118 GTP PG O3B sing N N 119 GTP O2G HOG2 sing N N 120 GTP O3G HOG3 sing N N 121 GTP O3B PB sing N N 122 GTP PB O1B doub N N 123 GTP PB O2B sing N N 124 GTP PB O3A sing N N 125 GTP O2B HOB2 sing N N 126 GTP O3A PA sing N N 127 GTP PA O1A doub N N 128 GTP PA O2A sing N N 129 GTP PA "O5'" sing N N 130 GTP O2A HOA2 sing N N 131 GTP "O5'" "C5'" sing N N 132 GTP "C5'" "C4'" sing N N 133 GTP "C5'" "H5'" sing N N 134 GTP "C5'" "H5''" sing N N 135 GTP "C4'" "O4'" sing N N 136 GTP "C4'" "C3'" sing N N 137 GTP "C4'" "H4'" sing N N 138 GTP "O4'" "C1'" sing N N 139 GTP "C3'" "O3'" sing N N 140 GTP "C3'" "C2'" sing N N 141 GTP "C3'" "H3'" sing N N 142 GTP "O3'" "HO3'" sing N N 143 GTP "C2'" "O2'" sing N N 144 GTP "C2'" "C1'" sing N N 145 GTP "C2'" "H2'" sing N N 146 GTP "O2'" "HO2'" sing N N 147 GTP "C1'" N9 sing N N 148 GTP "C1'" "H1'" sing N N 149 GTP N9 C8 sing Y N 150 GTP N9 C4 sing Y N 151 GTP C8 N7 doub Y N 152 GTP C8 H8 sing N N 153 GTP N7 C5 sing Y N 154 GTP C5 C6 sing N N 155 GTP C5 C4 doub Y N 156 GTP C6 O6 doub N N 157 GTP C6 N1 sing N N 158 GTP N1 C2 sing N N 159 GTP N1 HN1 sing N N 160 GTP C2 N2 sing N N 161 GTP C2 N3 doub N N 162 GTP N2 HN21 sing N N 163 GTP N2 HN22 sing N N 164 GTP N3 C4 sing N N 165 HOH O H1 sing N N 166 HOH O H2 sing N N 167 U OP3 P sing N N 168 U OP3 HOP3 sing N N 169 U P OP1 doub N N 170 U P OP2 sing N N 171 U P "O5'" sing N N 172 U OP2 HOP2 sing N N 173 U "O5'" "C5'" sing N N 174 U "C5'" "C4'" sing N N 175 U "C5'" "H5'" sing N N 176 U "C5'" "H5''" sing N N 177 U "C4'" "O4'" sing N N 178 U "C4'" "C3'" sing N N 179 U "C4'" "H4'" sing N N 180 U "O4'" "C1'" sing N N 181 U "C3'" "O3'" sing N N 182 U "C3'" "C2'" sing N N 183 U "C3'" "H3'" sing N N 184 U "O3'" "HO3'" sing N N 185 U "C2'" "O2'" sing N N 186 U "C2'" "C1'" sing N N 187 U "C2'" "H2'" sing N N 188 U "O2'" "HO2'" sing N N 189 U "C1'" N1 sing N N 190 U "C1'" "H1'" sing N N 191 U N1 C2 sing N N 192 U N1 C6 sing N N 193 U C2 O2 doub N N 194 U C2 N3 sing N N 195 U N3 C4 sing N N 196 U N3 H3 sing N N 197 U C4 O4 doub N N 198 U C4 C5 sing N N 199 U C5 C6 doub N N 200 U C5 H5 sing N N 201 U C6 H6 sing N N 202 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2YIF 'double helix' 2YIF 'a-form double helix' 2YIF 'hairpin loop' 2YIF 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GTP 1 1_555 B C 56 1_555 0.334 -0.207 0.359 -1.213 -11.906 -4.158 1 X_GTP1:C112_Z X 1 ? Z 112 ? 19 1 1 A G 2 1_555 B U 55 1_555 -1.247 0.058 0.681 0.464 -16.737 6.173 2 X_G2:U111_Z X 2 ? Z 111 ? 28 1 1 A A 3 1_555 B U 54 1_555 -0.164 0.552 -1.394 -20.884 -24.730 3.281 3 X_A3:U110_Z X 3 ? Z 110 ? 20 1 1 A U 4 1_555 B A 53 1_555 0.104 -0.144 0.059 -5.735 -9.483 10.694 4 X_U4:A109_Z X 4 ? Z 109 ? 20 1 1 A C 5 1_555 B G 52 1_555 -0.292 0.052 0.362 3.892 -2.836 9.044 5 X_C5:G108_Z X 5 ? Z 108 ? 19 1 1 A U 6 1_555 B A 51 1_555 0.513 0.253 -1.200 19.994 -22.721 1.684 6 X_U6:A107_Z X 6 ? Z 107 ? 20 1 1 A U 7 1_555 B A 50 1_555 -0.606 -0.082 -1.247 14.463 -10.078 4.509 7 X_U7:A106_Z X 7 ? Z 106 ? 20 1 1 A C 8 1_555 B G 49 1_555 0.565 0.166 -0.339 1.914 -23.890 14.063 8 X_C8:G105_Z X 8 ? Z 105 ? 19 1 1 A G 10 1_555 A G 47 1_555 -5.836 0.388 0.553 5.681 -17.713 69.575 9 X_G10:G47_X X 10 ? X 47 ? ? ? 1 A G 33 1_555 A C 46 1_555 -0.838 -0.253 -0.189 -4.763 -20.618 6.045 10 X_G33:C46_X X 33 ? X 46 ? 19 1 1 A U 34 1_555 A A 45 1_555 0.464 0.036 -0.168 -8.049 -17.714 5.752 11 X_U34:A45_X X 34 ? X 45 ? 20 1 1 A G 35 1_555 A C 44 1_555 0.363 0.230 -0.394 -14.608 -20.327 2.803 12 X_G35:C44_X X 35 ? X 44 ? 19 1 1 A G 36 1_555 A C 43 1_555 0.447 0.139 0.336 -11.496 -16.674 -1.008 13 X_G36:C43_X X 36 ? X 43 ? 19 1 1 A U 37 1_555 A A 40 1_555 4.512 -2.433 -0.709 1.255 -7.076 -92.458 14 X_U37:A40_X X 37 ? X 40 ? 24 4 1 A A 22 1_555 A U 18 1_555 -5.140 -2.124 0.741 -0.092 27.011 -94.840 15 X_A22:U18_X X 22 ? X 18 ? 24 4 1 A C 25 1_555 A G 17 1_555 -0.081 0.175 -0.809 30.934 -10.136 -9.360 16 X_C25:G17_X X 25 ? X 17 ? 19 1 1 A C 26 1_555 A G 16 1_555 0.975 -0.108 -0.782 7.141 -19.555 6.430 17 X_C26:G16_X X 26 ? X 16 ? 19 1 1 A C 27 1_555 A G 15 1_555 1.003 -0.270 0.110 -5.622 -1.475 1.247 18 X_C27:G15_X X 27 ? X 15 ? 19 1 1 A G 28 1_555 A A 14 1_555 7.010 -3.699 0.120 0.452 -13.192 -1.731 19 X_G28:A14_X X 28 ? X 14 ? 11 9 1 A A 29 1_555 B U 38 1_555 0.481 0.078 -0.543 -19.622 -7.039 1.006 20 X_A29:U94_Z X 29 ? Z 94 ? 20 1 1 A C 30 1_555 B G 37 1_555 0.664 -0.328 0.694 0.307 -18.890 -4.383 21 X_C30:G93_Z X 30 ? Z 93 ? 19 1 1 A C 31 1_555 B G 28 1_555 0.373 0.115 0.319 -9.233 -35.783 5.361 22 X_C31:G84_Z X 31 ? Z 84 ? 19 1 1 A G 32 1_555 B C 27 1_555 -0.347 -0.022 0.977 13.281 -10.630 -6.517 23 X_G32:C83_Z X 32 ? Z 83 ? 19 1 1 A G 41 1_555 B C 26 1_555 -0.339 -0.017 -0.185 -0.572 -23.859 2.419 24 X_G41:C82_Z X 41 ? Z 82 ? 19 1 1 A U 42 1_555 B A 25 1_555 0.113 0.014 -0.479 9.904 2.373 -9.542 25 X_U42:A81_Z X 42 ? Z 81 ? 20 1 1 B U 8 1_555 B A 24 1_555 -0.531 -0.116 -0.232 -7.479 -1.643 3.575 26 Z_U64:A80_Z Z 64 ? Z 80 ? 20 1 1 B U 9 1_555 B A 23 1_555 -0.219 0.461 0.269 0.706 -3.680 4.233 27 Z_U65:A79_Z Z 65 ? Z 79 ? 20 1 1 B U 10 1_555 B A 22 1_555 0.879 0.134 -0.818 6.749 -25.545 6.027 28 Z_U66:A78_Z Z 66 ? Z 78 ? 20 1 1 B G 11 1_555 B C 21 1_555 0.908 -0.069 0.525 -10.981 -9.134 1.018 29 Z_G67:C77_Z Z 67 ? Z 77 ? 19 1 1 B G 12 1_555 B C 20 1_555 0.042 0.123 0.148 -9.186 -5.170 1.244 30 Z_G68:C76_Z Z 68 ? Z 76 ? 19 1 1 B U 13 1_555 B A 17 1_555 4.544 -1.803 0.455 5.798 10.590 -86.650 31 Z_U69:A73_Z Z 69 ? Z 73 ? 24 4 1 B G 14 1_555 A A 38 1_555 6.977 -4.076 0.132 21.891 32.328 8.258 32 Z_G70:A38_X Z 70 ? X 38 ? 11 9 1 A A 48 1_555 B U 5 1_555 -5.449 -0.870 0.940 27.209 -10.232 10.128 33 X_A48:U61_Z X 48 ? Z 61 ? ? ? 1 A A 49 1_555 B U 4 1_555 0.753 -0.001 0.097 19.165 -30.216 8.477 34 X_A49:U60_Z X 49 ? Z 60 ? 20 1 1 A U 50 1_555 B A 3 1_555 0.031 0.100 -0.463 9.501 -11.961 -0.107 35 X_U50:A59_Z X 50 ? Z 59 ? 20 1 1 A C 51 1_555 B G 2 1_555 0.933 0.171 -1.292 5.361 -1.813 -9.321 36 X_C51:G58_Z X 51 ? Z 58 ? ? 1 1 A C 52 1_555 B GTP 1 1_555 -0.241 0.057 0.958 -13.299 -5.892 -15.414 37 X_C52:GTP57_Z X 52 ? Z 57 ? 19 1 1 B A 29 1_555 B G 42 1_555 -1.251 1.178 -0.828 15.997 -21.357 -13.360 38 Z_A85:G98_Z Z 85 ? Z 98 ? 8 1 1 B C 30 1_555 B G 41 1_555 -0.712 0.098 0.524 4.071 -20.170 5.459 39 Z_C86:G97_Z Z 86 ? Z 97 ? 19 1 1 B A 31 1_555 B U 40 1_555 -0.941 -0.183 0.319 -11.840 -32.427 13.418 40 Z_A87:U96_Z Z 87 ? Z 96 ? 20 1 1 B G 32 1_555 B C 39 1_555 -0.468 0.037 0.399 -6.336 -22.738 1.536 41 Z_G88:C95_Z Z 88 ? Z 95 ? 19 1 1 B U 33 1_555 B A 36 1_555 4.479 -2.587 0.586 14.667 2.013 -85.055 42 Z_U89:A92_Z Z 89 ? Z 92 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GTP 1 1_555 B C 56 1_555 A G 2 1_555 B U 55 1_555 -0.053 -2.681 2.885 -2.703 1.427 28.993 -5.596 -0.404 2.746 2.840 5.379 29.150 1 XX_GTP1G2:U111C112_ZZ X 1 ? Z 112 ? X 2 ? Z 111 ? 1 A G 2 1_555 B U 55 1_555 A A 3 1_555 B U 54 1_555 -0.897 -1.147 3.816 10.244 12.874 36.243 -3.310 2.612 2.913 19.507 -15.522 39.688 2 XX_G2A3:U110U111_ZZ X 2 ? Z 111 ? X 3 ? Z 110 ? 1 A A 3 1_555 B U 54 1_555 A U 4 1_555 B A 53 1_555 0.409 -0.901 2.781 -10.363 7.450 29.132 -2.740 -2.268 2.219 13.994 19.468 31.749 3 XX_A3U4:A109U110_ZZ X 3 ? Z 110 ? X 4 ? Z 109 ? 1 A U 4 1_555 B A 53 1_555 A C 5 1_555 B G 52 1_555 0.359 -2.206 2.791 -4.061 3.015 31.317 -4.489 -1.267 2.508 5.540 7.463 31.713 4 XX_U4C5:G108A109_ZZ X 4 ? Z 109 ? X 5 ? Z 108 ? 1 A C 5 1_555 B G 52 1_555 A U 6 1_555 B A 51 1_555 -0.307 -1.099 2.762 14.597 3.731 32.992 -2.195 2.163 2.295 6.184 -24.195 36.182 5 XX_C5U6:A107G108_ZZ X 5 ? Z 108 ? X 6 ? Z 107 ? 1 A U 6 1_555 B A 51 1_555 A U 7 1_555 B A 50 1_555 -0.028 -0.938 3.334 -0.054 14.900 26.418 -4.661 0.044 2.464 29.782 0.109 30.265 6 XX_U6U7:A106A107_ZZ X 6 ? Z 107 ? X 7 ? Z 106 ? 1 A U 7 1_555 B A 50 1_555 A C 8 1_555 B G 49 1_555 1.204 -1.019 3.684 0.521 13.581 36.510 -3.313 -1.740 3.139 20.812 -0.799 38.876 7 XX_U7C8:G105A106_ZZ X 7 ? Z 106 ? X 8 ? Z 105 ? 1 A G 10 1_555 A G 47 1_555 A G 33 1_555 A C 46 1_555 -0.125 -4.607 -2.036 137.997 -106.121 43.389 -2.362 -0.011 1.763 -54.197 -70.476 174.502 8 XX_G10G33:C46G47_XX X 10 ? X 47 ? X 33 ? X 46 ? 1 A G 33 1_555 A C 46 1_555 A U 34 1_555 A A 45 1_555 -0.481 -1.528 3.192 -2.609 8.751 42.088 -2.893 0.415 2.857 12.015 3.582 43.023 9 XX_G33U34:A45C46_XX X 33 ? X 46 ? X 34 ? X 45 ? 1 A U 34 1_555 A A 45 1_555 A G 35 1_555 A C 44 1_555 -1.206 -1.400 3.344 -3.304 14.752 26.848 -5.358 1.665 2.396 29.032 6.502 30.743 10 XX_U34G35:C44A45_XX X 34 ? X 45 ? X 35 ? X 44 ? 1 A G 35 1_555 A C 44 1_555 A G 36 1_555 A C 43 1_555 0.372 -1.588 3.137 -6.202 6.127 33.926 -3.479 -1.467 2.710 10.290 10.416 34.996 11 XX_G35G36:C43C44_XX X 35 ? X 44 ? X 36 ? X 43 ? 1 A G 36 1_555 A C 43 1_555 A U 37 1_555 A A 40 1_555 -1.289 -1.464 3.079 8.437 -2.142 83.493 -1.048 1.151 2.993 -1.604 -6.320 83.863 12 XX_G36U37:A40C43_XX X 36 ? X 43 ? X 37 ? X 40 ? 1 A A 22 1_555 A U 18 1_555 A C 25 1_555 A G 17 1_555 2.438 -1.724 2.902 3.410 -2.204 77.696 -1.317 -1.854 3.031 -1.755 -2.716 77.785 13 XX_A22C25:G17U18_XX X 22 ? X 18 ? X 25 ? X 17 ? 1 A C 25 1_555 A G 17 1_555 A C 26 1_555 A G 16 1_555 0.761 -1.883 3.824 1.347 14.095 43.403 -3.783 -0.854 3.120 18.482 -1.766 45.548 14 XX_C25C26:G16G17_XX X 25 ? X 17 ? X 26 ? X 16 ? 1 A C 26 1_555 A G 16 1_555 A C 27 1_555 A G 15 1_555 -1.157 -2.397 3.606 -5.882 14.325 25.225 -7.616 1.074 2.172 29.519 12.120 29.534 15 XX_C26C27:G15G16_XX X 26 ? X 16 ? X 27 ? X 15 ? 1 A C 27 1_555 A G 15 1_555 A G 28 1_555 A A 14 1_555 0.049 -1.057 3.157 4.201 3.483 56.487 -1.298 0.172 3.088 3.671 -4.427 56.728 16 XX_C27G28:A14G15_XX X 27 ? X 15 ? X 28 ? X 14 ? 1 A G 28 1_555 A A 14 1_555 A A 29 1_555 B U 38 1_555 2.171 -5.014 4.045 -1.003 9.698 29.792 -11.103 -4.209 2.267 18.257 1.888 31.312 17 XX_G28A29:U94A14_ZX X 28 ? X 14 ? X 29 ? Z 94 ? 1 A A 29 1_555 B U 38 1_555 A C 30 1_555 B G 37 1_555 0.353 -1.626 2.815 -7.067 -4.453 35.907 -2.041 -1.403 2.871 -7.106 11.276 36.834 18 XX_A29C30:G93U94_ZZ X 29 ? Z 94 ? X 30 ? Z 93 ? 1 A C 30 1_555 B G 37 1_555 A C 31 1_555 B G 28 1_555 -0.949 -2.272 3.265 5.634 11.897 23.979 -7.215 3.148 1.705 26.253 -12.433 27.308 19 XX_C30C31:G84G93_ZZ X 30 ? Z 93 ? X 31 ? Z 84 ? 1 A C 31 1_555 B G 28 1_555 A G 32 1_555 B C 27 1_555 -0.332 -0.482 2.747 -7.500 12.681 27.435 -2.907 -0.567 2.317 24.615 14.558 31.073 20 XX_C31G32:C83G84_ZZ X 31 ? Z 84 ? X 32 ? Z 83 ? 1 A G 32 1_555 B C 27 1_555 A G 41 1_555 B C 26 1_555 1.002 -1.854 3.627 6.284 3.984 32.383 -3.983 -0.589 3.508 7.028 -11.085 33.204 21 XX_G32G41:C82C83_ZZ X 32 ? Z 83 ? X 41 ? Z 82 ? 1 A G 41 1_555 B C 26 1_555 A U 42 1_555 B A 25 1_555 -1.208 -1.361 2.967 0.670 4.965 41.304 -2.379 1.764 2.773 7.008 -0.945 41.594 22 XX_G41U42:A81C82_ZZ X 41 ? Z 82 ? X 42 ? Z 81 ? 1 A U 42 1_555 B A 25 1_555 B U 8 1_555 B A 24 1_555 0.090 -3.318 3.861 -3.705 6.813 22.393 -10.416 -1.488 2.697 16.904 9.192 23.681 23 XZ_U42U64:A80A81_ZZ X 42 ? Z 81 ? Z 64 ? Z 80 ? 1 B U 8 1_555 B A 24 1_555 B U 9 1_555 B A 23 1_555 -0.230 -0.897 3.195 -5.733 -5.184 30.810 -0.682 -0.638 3.287 -9.570 10.584 31.743 24 ZZ_U64U65:A79A80_ZZ Z 64 ? Z 80 ? Z 65 ? Z 79 ? 1 B U 9 1_555 B A 23 1_555 B U 10 1_555 B A 22 1_555 0.070 -1.159 2.932 9.844 9.098 33.339 -3.001 1.096 2.465 15.120 -16.360 35.862 25 ZZ_U65U66:A78A79_ZZ Z 65 ? Z 79 ? Z 66 ? Z 78 ? 1 B U 10 1_555 B A 22 1_555 B G 11 1_555 B C 21 1_555 -0.125 -1.305 3.367 -9.820 23.289 33.105 -4.151 -0.796 2.027 35.201 14.842 41.434 26 ZZ_U66G67:C77A78_ZZ Z 66 ? Z 78 ? Z 67 ? Z 77 ? 1 B G 11 1_555 B C 21 1_555 B G 12 1_555 B C 20 1_555 0.308 -1.822 2.992 3.666 3.043 36.476 -3.260 -0.040 2.852 4.836 -5.827 36.775 27 ZZ_G67G68:C76C77_ZZ Z 67 ? Z 77 ? Z 68 ? Z 76 ? 1 B G 12 1_555 B C 20 1_555 B U 13 1_555 B A 17 1_555 -2.738 -2.069 3.105 0.198 2.479 72.196 -1.832 2.329 3.036 2.103 -0.168 72.233 28 ZZ_G68U69:A73C76_ZZ Z 68 ? Z 76 ? Z 69 ? Z 73 ? 1 B U 13 1_555 B A 17 1_555 B G 14 1_555 A A 38 1_555 1.227 -0.464 2.867 3.860 -1.123 -1.980 12.516 38.320 0.094 17.819 61.253 -4.481 29 ZZ_U69G70:A38A73_XZ Z 69 ? Z 73 ? Z 70 ? X 38 ? 1 A A 48 1_555 B U 5 1_555 A A 49 1_555 B U 4 1_555 -0.759 -0.360 3.620 1.430 3.980 58.976 -0.589 0.850 3.573 4.037 -1.450 59.113 30 XX_A48A49:U60U61_ZZ X 48 ? Z 61 ? X 49 ? Z 60 ? 1 A A 49 1_555 B U 4 1_555 A U 50 1_555 B A 3 1_555 -0.827 -1.631 3.430 -0.262 13.275 34.188 -4.354 1.281 2.643 21.597 0.427 36.604 31 XX_A49U50:A59U60_ZZ X 49 ? Z 60 ? X 50 ? Z 59 ? 1 A U 50 1_555 B A 3 1_555 A C 51 1_555 B G 2 1_555 -1.022 -1.356 3.306 5.561 10.883 35.248 -3.468 2.287 2.603 17.341 -8.861 37.243 32 XX_U50C51:G58A59_ZZ X 50 ? Z 59 ? X 51 ? Z 58 ? 1 A C 51 1_555 B G 2 1_555 A C 52 1_555 B GTP 1 1_555 0.004 -2.124 4.087 -6.232 14.912 30.452 -6.178 -1.088 2.732 26.201 10.950 34.385 33 XX_C51C52:GTP57G58_ZZ X 51 ? Z 58 ? X 52 ? Z 57 ? 1 B A 29 1_555 B G 42 1_555 B C 30 1_555 B G 41 1_555 0.883 -1.574 3.474 -12.082 9.953 33.429 -3.785 -2.968 2.469 16.243 19.717 36.818 34 ZZ_A85C86:G97G98_ZZ Z 85 ? Z 98 ? Z 86 ? Z 97 ? 1 B C 30 1_555 B G 41 1_555 B A 31 1_555 B U 40 1_555 0.115 -1.461 3.402 0.444 14.575 34.031 -4.187 -0.125 2.585 23.604 -0.718 36.938 35 ZZ_C86A87:U96G97_ZZ Z 86 ? Z 97 ? Z 87 ? Z 96 ? 1 B A 31 1_555 B U 40 1_555 B G 32 1_555 B C 39 1_555 -0.338 -1.021 3.001 -0.773 8.643 37.902 -2.468 0.425 2.719 13.098 1.172 38.847 36 ZZ_A87G88:C95U96_ZZ Z 87 ? Z 96 ? Z 88 ? Z 95 ? 1 B G 32 1_555 B C 39 1_555 B U 33 1_555 B A 36 1_555 -0.447 -0.850 3.051 2.099 1.762 81.502 -0.692 0.391 3.025 1.349 -1.607 81.540 37 ZZ_G88U89:A92C95_ZZ Z 88 ? Z 95 ? Z 89 ? Z 92 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 'POTASSIUM ION' K 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3F2Q _pdbx_initial_refinement_model.details 'PDB ENTRY 3F2Q' #